Clp amino terminal domain, pathogenicity island component
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G52490 |
| fragaria_vesca | FvH4_6g20090 |
| malus_domestica | MD12G1037900.v1.1 MD14G1036900.v1.1 |
| prunus_persica | Prupe.7G097400_v2.0.a1 |
| pyrus_communis | pycom12g03280 pycom14g03230 |
| rosa_chinensis | RchiOBHm_Chr3g0475541 |
| rosa_laevigata | RLG00000023834 |
| rosa_multiflora | Rmu_sc0000539.1_g000022 |
| rosa_roxburghii | Rroxscaffold_6G00406190 |
| rosa_rugosa | Rorug03G0150400 |
| rosa_samantha | Rh3AG199900 Rh3BG230100 Rh3CG224600 Rh3DG225200 |
| rosa_wichuraiana | Rw3G018130 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1674 |
| AccI | GTMKAC | 1 cut(s) | 1247 |
| AciI | CCGC | 7 cut(s) | 162, 235, 1335, 1521, 1654, 2240, 2297 |
| AclWI | GGATC | 2 cut(s) | 419, 1705 |
| AcoI | YGGCCR | 2 cut(s) | 91, 1138 |
| AcsI | RAATTY | 4 cut(s) | 694, 821, 1360, 2631 |
| AcuI | CTGAAG | 3 cut(s) | 1058, 1794, 2398 |
| AfaI | GTAC | 4 cut(s) | 469, 1433, 1462, 1745 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 81, 241, 265, 266, 602 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2248 |
| AhlI | ACTAGT | 1 cut(s) | 1763 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 377, 409, 2361, 2393 |
| Alw21I | GWGCWC | 2 cut(s) | 328, 1872 |
| Alw26I | GTCTC | 5 cut(s) | 505, 1062, 1148, 1195, 2532 |
| AlwI | GGATC | 2 cut(s) | 419, 1705 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 47 |
| Ama87I | CYCGRG | 2 cut(s) | 2163, 2419 |
| AoxI | GGCC | 3 cut(s) | 91, 148, 1138 |
| ApoI | RAATTY | 4 cut(s) | 694, 821, 1360, 2631 |
| AseI | ATTAAT | 1 cut(s) | 1574 |
| AspLEI | GCGC | 3 cut(s) | 1904, 2143, 2619 |
| AsuC2I | CCSGG | 1 cut(s) | 242 |
| AsuHPI | GGTGA | 5 cut(s) | 176, 266, 326, 829, 1996 |
| AvaI | CYCGRG | 2 cut(s) | 2163, 2419 |
| AxyI | CCTNAGG | 1 cut(s) | 1189 |
| BalI | TGGCCA | 2 cut(s) | 93, 1140 |
| BanI | GGYRCC | 1 cut(s) | 1674 |
| BanII | GRGCYC | 2 cut(s) | 272, 1872 |
| BbsI | GAAGAC | 2 cut(s) | 2244, 2588 |
| Bbv12I | GWGCWC | 2 cut(s) | 328, 1872 |
| BbvCI | CCTCAGC | 1 cut(s) | 753 |
| BccI | CCATC | 7 cut(s) | 299, 422, 769, 1149, 1153, 1999, 2015 |
| BceAI | ACGGC | 1 cut(s) | 482 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 147, 181, 2209, 2219, 2243, 2253 |
| BclI | TGATCA | 4 cut(s) | 988, 1026, 1240, 1723 |
| BcnI | CCSGG | 1 cut(s) | 242 |
| BcoDI | GTCTC | 5 cut(s) | 505, 1062, 1148, 1195, 2532 |
| BcuI | ACTAGT | 1 cut(s) | 1763 |
| BglII | AGATCT | 1 cut(s) | 946 |
| BlpI | GCTNAGC | 2 cut(s) | 2100, 2144 |
| Bme1390I | CCNGG | 1 cut(s) | 242 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2248 |
| BmeT110I | CYCGRG | 2 cut(s) | 2163, 2419 |
| BmiI | GGNNCC | 2 cut(s) | 1424, 1676 |
| BmrFI | CCNGG | 1 cut(s) | 242 |
| BmsI | GCATC | 3 cut(s) | 94, 1669, 2374 |
| BoxI | GACNNNNGTC | 2 cut(s) | 856, 2592 |
| BpiI | GAAGAC | 2 cut(s) | 2244, 2588 |
| BpmI | CTGGAG | 1 cut(s) | 1172 |
| Bpu10I | CCTNAGC | 1 cut(s) | 753 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 2100, 2144 |
| BpuEI | CTTGAG | 3 cut(s) | 227, 312, 935 |
| BpuMI | CCSGG | 1 cut(s) | 242 |
| Bsa29I | ATCGAT | 1 cut(s) | 2579 |
| BsaI | GGTCTC | 1 cut(s) | 1062 |
| BsaJI | CCNNGG | 3 cut(s) | 303, 549, 1922 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 81, 241, 265, 266, 602 |
| Bse1I | ACTGG | 2 cut(s) | 638, 1273 |
| Bse21I | CCTNAGG | 1 cut(s) | 1189 |
| Bse3DI | GCAATG | 3 cut(s) | 490, 1069, 2136 |
| BseCI | ATCGAT | 1 cut(s) | 2579 |
| BseDI | CCNNGG | 3 cut(s) | 303, 549, 1922 |
| BseGI | GGATG | 3 cut(s) | 679, 1141, 1171 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 81, 241, 265, 266, 602 |
| BseMI | GCAATG | 3 cut(s) | 490, 1069, 2136 |
| BseMII | CTCAG | 8 cut(s) | 744, 1190, 1196, 1203, 1338, 1548, 1744, 2169 |
| BseNI | ACTGG | 2 cut(s) | 638, 1273 |
| BseRI | GAGGAG | 4 cut(s) | 99, 783, 832, 2430 |
| BseYI | CCCAGC | 1 cut(s) | 455 |
| BshFI | GGCC | 3 cut(s) | 93, 150, 1140 |
| BshNI | GGYRCC | 1 cut(s) | 1674 |
| BshVI | ATCGAT | 1 cut(s) | 2579 |
| BsiHKAI | GWGCWC | 2 cut(s) | 328, 1872 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2163, 2419 |
| BsiSI | CCGG | 1 cut(s) | 242 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 81, 241, 265, 266, 602 |
| BsmAI | GTCTC | 5 cut(s) | 505, 1062, 1148, 1195, 2532 |
| BsmBI | CGTCTC | 1 cut(s) | 505 |
| BsmI | GAATGC | 1 cut(s) | 1334 |
| BsnI | GGCC | 3 cut(s) | 93, 150, 1140 |
| Bso31I | GGTCTC | 1 cut(s) | 1062 |
| BsoBI | CYCGRG | 2 cut(s) | 2163, 2419 |
| Bsp1286I | GDGCHC | 3 cut(s) | 272, 328, 1872 |
| Bsp1407I | TGTACA | 1 cut(s) | 1743 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 2100, 2144 |
| Bsp19I | CCATGG | 1 cut(s) | 1922 |
| BspACI | CCGC | 7 cut(s) | 162, 235, 1335, 1521, 1654, 2240, 2297 |
| BspANI | GGCC | 3 cut(s) | 93, 150, 1140 |
| BspCNI | CTCAG | 8 cut(s) | 745, 1191, 1197, 1202, 1337, 1549, 1743, 2170 |
| BspDI | ATCGAT | 1 cut(s) | 2579 |
| BspHI | TCATGA | 1 cut(s) | 444 |
| BspLI | GGNNCC | 2 cut(s) | 1424, 1676 |
| BspPI | GGATC | 2 cut(s) | 419, 1705 |
| BspT107I | GGYRCC | 1 cut(s) | 1674 |
| BspTNI | GGTCTC | 1 cut(s) | 1062 |
| BsrDI | GCAATG | 3 cut(s) | 490, 1069, 2136 |
| BsrGI | TGTACA | 1 cut(s) | 1743 |
| BsrI | ACTGG | 2 cut(s) | 638, 1273 |
| BssECI | CCNNGG | 3 cut(s) | 303, 549, 1922 |
| BssT1I | CCWWGG | 3 cut(s) | 303, 549, 1922 |
| Bst4CI | ACNGT | 3 cut(s) | 1159, 1391, 1431 |
| Bst6I | CTCTTC | 2 cut(s) | 1585, 1600 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1383 |
| BstAUI | TGTACA | 1 cut(s) | 1743 |
| BstDSI | CCRYGG | 1 cut(s) | 1922 |
| BstF5I | GGATG | 3 cut(s) | 679, 1141, 1171 |
| BstHHI | GCGC | 3 cut(s) | 1904, 2143, 2619 |
| BstMAI | GTCTC | 5 cut(s) | 505, 1062, 1148, 1195, 2532 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 308, 643, 1329, 1383, 2409 |
| BstNSI | RCATGY | 1 cut(s) | 684 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 856, 2592 |
| BstSCI | CCNGG | 1 cut(s) | 240 |
| BstV2I | GAAGAC | 2 cut(s) | 2244, 2588 |
| BstX2I | RGATCY | 2 cut(s) | 946, 1697 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 304, 344 |
| BstYI | RGATCY | 2 cut(s) | 946, 1697 |
| Bsu15I | ATCGAT | 1 cut(s) | 2579 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1189 |
| BsuRI | GGCC | 3 cut(s) | 93, 150, 1140 |
| BsuTUI | ATCGAT | 1 cut(s) | 2579 |
| BtgI | CCRYGG | 1 cut(s) | 1922 |
| BtsCI | GGATG | 3 cut(s) | 679, 1141, 1171 |
| BtsIMutI | CAGTG | 3 cut(s) | 645, 1215, 1396 |
| CaiI | CAGNNNCTG | 1 cut(s) | 47 |
| CciI | TCATGA | 1 cut(s) | 444 |
| CfoI | GCGC | 3 cut(s) | 1904, 2143, 2619 |
| ClaI | ATCGAT | 1 cut(s) | 2579 |
| CseI | GACGC | 1 cut(s) | 2252 |
| Csp6I | GTAC | 4 cut(s) | 468, 1432, 1461, 1744 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2341, 2376 |
| CviQI | GTAC | 4 cut(s) | 468, 1432, 1461, 1744 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2248 |
| EaeI | YGGCCR | 2 cut(s) | 91, 1138 |
| Eam1104I | CTCTTC | 2 cut(s) | 1585, 1600 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2248 |
| EarI | CTCTTC | 2 cut(s) | 1585, 1600 |
| EciI | GGCGGA | 1 cut(s) | 1324 |
| Ecl136II | GAGCTC | 1 cut(s) | 1870 |
| Eco130I | CCWWGG | 3 cut(s) | 303, 549, 1922 |
| Eco147I | AGGCCT | 1 cut(s) | 150 |
| Eco24I | GRGCYC | 2 cut(s) | 272, 1872 |
| Eco31I | GGTCTC | 1 cut(s) | 1062 |
| Eco32I | GATATC | 1 cut(s) | 1692 |
| Eco53kI | GAGCTC | 1 cut(s) | 1870 |
| Eco57I | CTGAAG | 3 cut(s) | 1058, 1794, 2398 |
| Eco81I | CCTNAGG | 1 cut(s) | 1189 |
| Eco88I | CYCGRG | 2 cut(s) | 2163, 2419 |
| EcoICRI | GAGCTC | 1 cut(s) | 1870 |
| EcoRV | GATATC | 1 cut(s) | 1692 |
| EcoT14I | CCWWGG | 3 cut(s) | 303, 549, 1922 |
| EcoT38I | GRGCYC | 2 cut(s) | 272, 1872 |
| ErhI | CCWWGG | 3 cut(s) | 303, 549, 1922 |
| Esp3I | CGTCTC | 1 cut(s) | 505 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2361, 2393 |
| FauNDI | CATATG | 1 cut(s) | 1618 |
| FbaI | TGATCA | 4 cut(s) | 988, 1026, 1240, 1723 |
| FblI | GTMKAC | 1 cut(s) | 1247 |
| FokI | GGATG | 3 cut(s) | 686, 1128, 1158 |
| FriOI | GRGCYC | 2 cut(s) | 272, 1872 |
| GlaI | GCGC | 3 cut(s) | 1903, 2142, 2618 |
| GsaI | CCCAGC | 1 cut(s) | 459 |
| GsuI | CTGGAG | 1 cut(s) | 1172 |
| HaeIII | GGCC | 3 cut(s) | 93, 150, 1140 |
| HapII | CCGG | 1 cut(s) | 242 |
| HgaI | GACGC | 1 cut(s) | 2252 |
| HhaI | GCGC | 3 cut(s) | 1904, 2143, 2619 |
| Hin6I | GCGC | 3 cut(s) | 1902, 2141, 2617 |
| HinP1I | GCGC | 3 cut(s) | 1902, 2141, 2617 |
| HincII | GTYRAC | 1 cut(s) | 580 |
| HindII | GTYRAC | 1 cut(s) | 580 |
| HindIII | AAGCTT | 3 cut(s) | 881, 2102, 2410 |
| HinfI | GANTC | 6 cut(s) | 441, 1207, 1394, 2161, 2171, 2603 |
| HpaII | CCGG | 1 cut(s) | 242 |
| HphI | GGTGA | 5 cut(s) | 176, 266, 326, 829, 1996 |
| Hpy166II | GTNNAC | 4 cut(s) | 580, 703, 957, 1248 |
| Hpy188I | TCNGA | 9 cut(s) | 827, 1077, 1305, 1327, 1473, 1492, 1558, 2464, 2569 |
| Hpy8I | GTNNAC | 4 cut(s) | 580, 703, 957, 1248 |
| HpyCH4III | ACNGT | 3 cut(s) | 1159, 1391, 1431 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 308, 643, 1329, 1383, 2409 |
| HspAI | GCGC | 3 cut(s) | 1902, 2141, 2617 |
| Ksp22I | TGATCA | 4 cut(s) | 988, 1026, 1240, 1723 |
| LmnI | GCTCC | 6 cut(s) | 397, 1033, 1337, 1428, 1867, 2290 |
| LweI | GCATC | 3 cut(s) | 94, 1669, 2374 |
| MaeIII | GTNAC | 6 cut(s) | 70, 103, 916, 1213, 1480, 2012 |
| MfeI | CAATTG | 3 cut(s) | 351, 600, 2331 |
| MflI | RGATCY | 2 cut(s) | 946, 1697 |
| MhlI | GDGCHC | 3 cut(s) | 272, 328, 1872 |
| MlsI | TGGCCA | 2 cut(s) | 93, 1140 |
| MluNI | TGGCCA | 2 cut(s) | 93, 1140 |
| MlyI | GAGTC | 3 cut(s) | 450, 1216, 2155 |
| MmeI | TCCRAC | 5 cut(s) | 321, 375, 922, 1450, 1632 |
| Mox20I | TGGCCA | 2 cut(s) | 93, 1140 |
| MscI | TGGCCA | 2 cut(s) | 93, 1140 |
| MseI | TTAA | 5 cut(s) | 59, 894, 1574, 2078, 2322 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1028 |
| Msp20I | TGGCCA | 2 cut(s) | 93, 1140 |
| MspI | CCGG | 1 cut(s) | 242 |
| MspR9I | CCNGG | 1 cut(s) | 242 |
| MunI | CAATTG | 3 cut(s) | 351, 600, 2331 |
| Mva1269I | GAATGC | 1 cut(s) | 1334 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 308, 643, 1329, 1383, 2409 |
| NciI | CCSGG | 1 cut(s) | 242 |
| NcoI | CCATGG | 1 cut(s) | 1922 |
| NdeI | CATATG | 1 cut(s) | 1618 |
| NlaIV | GGNNCC | 2 cut(s) | 1424, 1676 |
| NmuCI | GTSAC | 3 cut(s) | 916, 1213, 1480 |
| NspI | RCATGY | 1 cut(s) | 684 |
| PaeR7I | CTCGAG | 2 cut(s) | 2163, 2419 |
| PagI | TCATGA | 1 cut(s) | 444 |
| PceI | AGGCCT | 1 cut(s) | 150 |
| PctI | GAATGC | 1 cut(s) | 1334 |
| PfeI | GAWTC | 3 cut(s) | 1394, 2171, 2603 |
| PflFI | GACNNNGTC | 1 cut(s) | 1206 |
| PleI | GAGTC | 3 cut(s) | 449, 1215, 2155 |
| PpsI | GAGTC | 3 cut(s) | 449, 1215, 2155 |
| PshAI | GACNNNNGTC | 2 cut(s) | 856, 2592 |
| PshBI | ATTAAT | 1 cut(s) | 1574 |
| Psp124BI | GAGCTC | 1 cut(s) | 1872 |
| PspFI | CCCAGC | 1 cut(s) | 455 |
| PspN4I | GGNNCC | 2 cut(s) | 1424, 1676 |
| PspXI | VCTCGAGB | 1 cut(s) | 2163 |
| PstNI | CAGNNNCTG | 1 cut(s) | 47 |
| PsuI | RGATCY | 2 cut(s) | 946, 1697 |
| PsyI | GACNNNGTC | 1 cut(s) | 1206 |
| RsaI | GTAC | 4 cut(s) | 469, 1433, 1462, 1745 |
| RsaNI | GTAC | 4 cut(s) | 468, 1432, 1461, 1744 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1028 |
| SacI | GAGCTC | 1 cut(s) | 1872 |
| SaqAI | TTAA | 5 cut(s) | 59, 894, 1574, 2078, 2322 |
| SchI | GAGTC | 3 cut(s) | 450, 1216, 2155 |
| ScrFI | CCNGG | 1 cut(s) | 242 |
| SduI | GDGCHC | 3 cut(s) | 272, 328, 1872 |
| SfaNI | GCATC | 3 cut(s) | 94, 1669, 2374 |
| Sfr274I | CTCGAG | 2 cut(s) | 2163, 2419 |
| SlaI | CTCGAG | 2 cut(s) | 2163, 2419 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1028 |
| SmlI | CTYRAG | 5 cut(s) | 206, 327, 950, 2163, 2419 |
| SmoI | CTYRAG | 5 cut(s) | 206, 327, 950, 2163, 2419 |
| SpeI | ACTAGT | 1 cut(s) | 1763 |
| SseBI | AGGCCT | 1 cut(s) | 150 |
| SsiI | CCGC | 7 cut(s) | 162, 235, 1335, 1521, 1654, 2240, 2297 |
| SstI | GAGCTC | 1 cut(s) | 1872 |
| StuI | AGGCCT | 1 cut(s) | 150 |
| StyD4I | CCNGG | 1 cut(s) | 240 |
| StyI | CCWWGG | 3 cut(s) | 303, 549, 1922 |
| TaaI | ACNGT | 3 cut(s) | 1159, 1391, 1431 |
| TatI | WGTACW | 3 cut(s) | 1431, 1460, 1743 |
| TfiI | GAWTC | 3 cut(s) | 1394, 2171, 2603 |
| Tru1I | TTAA | 5 cut(s) | 59, 894, 1574, 2078, 2322 |
| Tru9I | TTAA | 5 cut(s) | 59, 894, 1574, 2078, 2322 |
| TscAI | CASTG | 3 cut(s) | 645, 1222, 1396 |
| TseFI | GTSAC | 3 cut(s) | 916, 1213, 1480 |
| Tsp45I | GTSAC | 3 cut(s) | 916, 1213, 1480 |
| TspDTI | ATGAA | 4 cut(s) | 1160, 1605, 1773, 2490 |
| TspRI | CASTG | 3 cut(s) | 645, 1222, 1396 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1206 |
| VspI | ATTAAT | 1 cut(s) | 1574 |
| XapI | RAATTY | 4 cut(s) | 694, 821, 1360, 2631 |
| XbaI | TCTAGA | 1 cut(s) | 860 |
| XceI | RCATGY | 1 cut(s) | 684 |
| XhoI | CTCGAG | 2 cut(s) | 2163, 2419 |
| XmiI | GTMKAC | 1 cut(s) | 1247 |