Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0014448

Physical Location & Seq

Genomic Coordinates Reverse (-)

28641375 .. 28644890

Gene Structure 3516 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00406190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2550 bp

ATGAGAACAGGAGGTTGCACGCTTCAACAGGGTCTAACTACAGAGGCTGCGAACATAGTAAAGCTAGCACTAACCCTAGCAAGGCACCGAGGCCATGCCCAAGTCACTCCTCTCCATGTTGCAAACACCATGCTCTCTTCTTCAACCGGCCTATTGCGAACTGCTTGCCTTCAATCACACTCTCACCCACTTCAATGCAAAGCACTTGAGCTTTGCTTCAATGTTGCCCTCAACCGCCTCCCGGCCTCCAATTCCAGCCCCATGTTGGGTGGCGGTCACCACCCACAAAACCCTTCCATCTCCAACGCCTTGGTCGCTGCTTTCAAGCGCGCGCAGGCTCACCAACGCCGCGGTTCCATTGAGAACCAGCAGCAGCCCCTTCTAGCAGTGAAGATAGAGCTGGAGCAACTCATAATTTCAATCTTAGATGATCCAAGTGTAAGTAGAGTCATGAGAGAAGCTGGGTTTTCTAGTACCCAGGTCAAAAGCAATGTAGAACAAGCTGTCTCCATGGAAATATGTAACTCCCAAACTACTACTACTCCTTGTGTAAGTAGTAGTAAGTCCAAGGAGAGTAATCTCCAGTTGATTCCTTTGTCAGTGGTACCTAATCTAGATCCAGTTAGGAATGAGGATGTGACAAGTGTTATAGAGAATTTGGTGAAGAAAAGAAGGAAGAGTATTGTGATTGTGGGTGAGTGTCTTTCTAGTGTTGAGGGCGTAGTGAGGGGAGTGATGGAGAAGGTTGATAAGGGAGATCAACATGTTGTCGTTGATGAGGGTTTCAGTTTGAGAGAGGTGAAATTTGTAACACTTTCTCTCTCCTCTTTTGGACATATTTCTAGAGTAGAGGTTGAACAGAAACTTGGAGAACTCAAGAGCCTAGTAAGGAGCTGTGTGGGGAAAGGAATAATTTTGTATCTGGGAGATCTCAAGTGGATTACTGAGTATAGGACTAGTAGTAGTTCAAGTCATGATCAGCAGGGAATTAGGGGGTATTATTGTCCTGTGGAGCACATGATCATGGAGCTTGGGAACCTGGTTTGTGGGATTAATGGTGAGACTAATGGTGGGAGCGTTTGGCTTGTGGGGATTGCTACTTTTCAAACTTACATGAGATGCAAATCTGGCCATCCATCACTTGAGACTGTTTGGGGTATTCATCCTCTAACAATTCCCTCAACCAGCCTGCGCTTGAGTCTTGTCACAGCTGAAAGTACTCGTATAATTTACAGTGAGCTGCACAGTGAGTCTACAAGCAAGATAGCTGAAGGTGGAGATCAGAAGCAGCTCACTTGCTGTGACGAATGCTCAAACAAGTTCGAAGAAGAAGCTCAAAGGTTACGAAGCAGTAGCATTTGTAACAGTGAATCCACCACTTCAAACCTTCCTGCATGGCTCCAACAGTACAAGAATGAGAACAAAGGACTAAACACAACTACTAATATTCATCAGAACTCTGTCTCAGTTTCAGAACTTTGCAAAAAGTGGAACTCCATTTGCAAAGCAATGAACCACCAACAGCATTCCAATAATTCTTCTGAGCTCAAGACTCTTACAATATTCTCTTCTCTCTCACCCTCTTCCTCCACTTCCGGTTTTTCATATGAGCAACAACAATACCCTACTTTGCACCACCATCATTCTTGGAGGGACCAACATTTCTGGATATCCGAAGCTCGTGACAAGGCTGTCGAACCCAATTTGACAATGTACTCATCAAATCCTAATTCCACTCCTAATTCGGCTTCATCCAGTGATGTCATGGAAACAGACTATGTTCCGAGGTTCAAGGAGATCAATGGCGAGAACCTGAAAACCCTATGCAATGCATTGGAGACAAAAGTGCCGTGGCAGAAGGATGTAATTCCTGACATAGCCTCTACAATCTTGAAATGCAGGTCCGGAATGGTCAGAAGAAAAGGGAGTAAGGTGGGAACTAATTTCAGCCACGAGGCAAAAGAGGAAACATGGTTGTTCTTTCAAGGTCTTGATATGGAAGCTAAGGAAAAAGTTGGAAGGGAATTAGCTCGTCTTGTTTTCGGGTCTCAAACCAACCTCATTTCCATTGCACTAAGCAGTTTCTCGTCGACTCGGGCAGACTCAACCGAGGATTGCAGAAGCAAAAGACCACGAGACGAACAAAGTTGCAGTTATGTGGAAAGATTCGCTGAGGCGGTGGCGTTTAATCCACATAGGGTGTTTTTAGTTGAAGATGTAGAGCAAGCGGACTATTGCTCTCAAATGGGGTTTAAGAGAGCGATCGAAAGAGGGAGAATAACAAATTCGAGTGGAGAAGAAGTTGGCCTTGGAGATGCCATCATTATTTTGAGCTGCGAAAGCTTTAGTTCGAGATCAAGAGCTTGCTCTCCCCCTATAAAGCAAAAATCATCAGAAGACGAAGATCATAAGGATTCAAGTCCTCGTGAGTCTTTGGATTTGAACATTTCGTTTGATAATGACGATGTTGATGGTGATCAGTCAATTGATGACATTGGTCTTCTTGAATCGGTTGATAGAAGGATCATTTTCAAAATTCAAGAACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006417 GO:0006950 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009941 GO:0009987 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031967 GO:0031975 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043335 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0080090 GO:1901700 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko04213 map04213

Pfam Domains

Protein Families

Clp_N

Protein Analysis

849

Amino Acids

93.97

Weight (kDa)

6.26

Isoelectric Point (pI)

48.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Clp_N	PF02861	12 - 116	2.3e-06	Clp repeat (R) N-terminal domain
NBD_SMAX1	PF23569	210 - 403	4.2e-65	SMAX1 nucleotide binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0014448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52490
fragaria_vesca	FvH4_6g20090
malus_domestica	MD12G1037900.v1.1 MD14G1036900.v1.1
prunus_persica	Prupe.7G097400_v2.0.a1
pyrus_communis	pycom12g03280 pycom14g03230
rosa_chinensis	RchiOBHm_Chr3g0475541
rosa_laevigata	RLG00000023834
rosa_multiflora	Rmu_sc0000539.1_g000022
rosa_roxburghii	Rroxscaffold_6G00406190
rosa_rugosa	Rorug03G0150400
rosa_samantha	Rh3AG199900 Rh3BG230100 Rh3CG224600 Rh3DG225200
rosa_wichuraiana	Rw3G018130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1691
Acc36I	ACCTGC	1 cut(s)	1890
Acc65I	GGTACC	1 cut(s)	604
AccB1I	GGYRCC	2 cut(s)	84, 604
AccI	GTMKAC	2 cut(s)	1253, 2090
AccII	CGCG	3 cut(s)	330, 332, 351
AccIII	TCCGGA	1 cut(s)	1904
AciI	CCGC	6 cut(s)	235, 273, 349, 351, 2177, 2228
AclWI	GGATC	3 cut(s)	425, 611, 2531
AcoI	YGGCCR	1 cut(s)	1129
AcsI	RAATTY	4 cut(s)	655, 803, 2284, 2535
AcuI	CTGAAG	1 cut(s)	1290
AfaI	GTAC	5 cut(s)	475, 606, 1219, 1409, 1715
AfiI	CCNNNNNNNGG	4 cut(s)	81, 241, 265, 266
AflIII	ACRYGT	1 cut(s)	763
AhlI	ACTAGT	1 cut(s)	956
AjnI	CCWGG	2 cut(s)	477, 1038
AjuI	GAANNNNNNNTTGG	4 cut(s)	849, 881, 2292, 2324
Alw21I	GWGCWC	2 cut(s)	1017, 1548
Alw26I	GTCTC	7 cut(s)	511, 1055, 1139, 1468, 1832, 2052, 2130
AlwI	GGATC	3 cut(s)	425, 611, 2531
AlwNI	CAGNNNCTG	1 cut(s)	47
Ama87I	CYCGRG	1 cut(s)	2094
Aor13HI	TCCGGA	1 cut(s)	1904
AoxI	GGCC	5 cut(s)	91, 148, 243, 1129, 2305
ApeKI	GCWGC	7 cut(s)	47, 317, 370, 373, 1240, 1288, 2334
ApoI	RAATTY	4 cut(s)	655, 803, 2284, 2535
AseI	ATTAAT	1 cut(s)	1053
Asp718I	GGTACC	1 cut(s)	604
AspLEI	GCGC	4 cut(s)	330, 332, 334, 1194
AspS9I	GGNCC	2 cut(s)	1654, 1902
AsuC2I	CCSGG	1 cut(s)	242
AsuHPI	GGTGA	9 cut(s)	176, 269, 332, 673, 707, 811, 1070, 1569, 2486
AsuII	TTCGAA	1 cut(s)	1323
AsuNHI	GCTAGC	1 cut(s)	64
AvaI	CYCGRG	1 cut(s)	2094
AvaII	GGWCC	2 cut(s)	1654, 1902
BalI	TGGCCA	1 cut(s)	1131
BanI	GGYRCC	2 cut(s)	84, 604
BanII	GRGCYC	1 cut(s)	1548
BauI	CACGAG	4 cut(s)	1680, 1952, 2133, 2424
BbsI	GAAGAC	2 cut(s)	2403, 2492
Bbv12I	GWGCWC	2 cut(s)	1017, 1548
BbvCI	CCTCAGC	1 cut(s)	2172
BbvI	GCAGC	7 cut(s)	34, 304, 382, 385, 1227, 1300, 2321
BccI	CCATC	7 cut(s)	305, 730, 1140, 1144, 1647, 2327, 2465
BceAI	ACGGC	1 cut(s)	1834
BcgI	CGANNNNNNTGC	2 cut(s)	147, 181
BciT130I	CCWGG	2 cut(s)	479, 1040
BclI	TGATCA	3 cut(s)	976, 1020, 2476
BcnI	CCSGG	1 cut(s)	242
BcoDI	GTCTC	7 cut(s)	511, 1055, 1139, 1468, 1832, 2052, 2130
BcuI	ACTAGT	1 cut(s)	956
BfaI	CTAG	9 cut(s)	65, 77, 383, 471, 614, 708, 843, 884, 957
BfmI	CTRYAG	1 cut(s)	39
BfuAI	ACCTGC	1 cut(s)	1890
BglII	AGATCT	1 cut(s)	928
BisI	GCNGC	8 cut(s)	48, 318, 349, 371, 374, 1241, 1289, 2335
BlsI	GCNGC	8 cut(s)	49, 319, 350, 372, 375, 1242, 1290, 2336
BmcAI	AGTACT	1 cut(s)	1219
Bme1390I	CCNGG	3 cut(s)	242, 479, 1040
Bme18I	GGWCC	2 cut(s)	1654, 1902
BmeT110I	CYCGRG	1 cut(s)	2094
BmgT120I	GGNCC	2 cut(s)	1654, 1902
BmiI	GGNNCC	6 cut(s)	86, 355, 606, 1037, 1400, 1655
BmrFI	CCNGG	3 cut(s)	242, 479, 1040
BmsI	GCATC	2 cut(s)	1109, 2305
BmtI	GCTAGC	1 cut(s)	68
BoxI	GACNNNNGTC	1 cut(s)	2496
BpiI	GAAGAC	2 cut(s)	2403, 2492
BpmI	CTGGAG	2 cut(s)	422, 566
Bpu10I	CCTNAGC	2 cut(s)	2004, 2172
Bpu14I	TTCGAA	1 cut(s)	1323
BpuEI	CTTGAG	6 cut(s)	227, 860, 917, 1163, 1216, 1532
BpuMI	CCSGG	1 cut(s)	242
BsaBI	GATNNNNATC	2 cut(s)	1123, 2475
BsaI	GGTCTC	1 cut(s)	2052
BsaWI	WCCGGW	2 cut(s)	1595, 1904
BsaXI	ACNNNNNCTCC	4 cut(s)	526, 556, 2286, 2316
Bsc4I	CCNNNNNNNGG	4 cut(s)	81, 241, 265, 266
Bse118I	RCCGGY	1 cut(s)	146
Bse1I	ACTGG	3 cut(s)	583, 620, 1755
Bse3DI	GCAATG	4 cut(s)	496, 1515, 1834, 2067
Bse8I	GATNNNNATC	2 cut(s)	1123, 2475
BseAI	TCCGGA	1 cut(s)	1904
BseBI	CCWGG	2 cut(s)	479, 1040
BseGI	GGATG	5 cut(s)	640, 1132, 1162, 1751, 1867
BseJI	GATNNNNATC	2 cut(s)	1123, 2475
BseLI	CCNNNNNNNGG	4 cut(s)	81, 241, 265, 266
BseMI	GCAATG	4 cut(s)	496, 1515, 1834, 2067
BseMII	CTCAG	4 cut(s)	936, 1479, 1533, 2163
BseNI	ACTGG	3 cut(s)	583, 620, 1755
BsePI	GCGCGC	2 cut(s)	328, 330
BseRI	GAGGAG	2 cut(s)	99, 814
BseXI	GCAGC	7 cut(s)	34, 304, 382, 385, 1227, 1300, 2321
BseYI	CCCAGC	1 cut(s)	461
BsgI	GTGCAG	1 cut(s)	1226
Bsh1236I	CGCG	3 cut(s)	330, 332, 351
Bsh1285I	CGRYCG	1 cut(s)	2265
BshFI	GGCC	5 cut(s)	93, 150, 245, 1131, 2307
BshNI	GGYRCC	2 cut(s)	84, 604
BsiEI	CGRYCG	1 cut(s)	2265
BsiHKAI	GWGCWC	2 cut(s)	1017, 1548
BsiHKCI	CYCGRG	1 cut(s)	2094
BsiSI	CCGG	4 cut(s)	147, 242, 1596, 1905
BslFI	GGGAC	1 cut(s)	1667
BslI	CCNNNNNNNGG	4 cut(s)	81, 241, 265, 266
BsmAI	GTCTC	7 cut(s)	511, 1055, 1139, 1468, 1832, 2052, 2130
BsmBI	CGTCTC	1 cut(s)	2130
BsmFI	GGGAC	1 cut(s)	1667
BsmI	GAATGC	2 cut(s)	1313, 1525
BsnI	GGCC	5 cut(s)	93, 150, 245, 1131, 2307
Bso31I	GGTCTC	1 cut(s)	2052
BsoBI	CYCGRG	1 cut(s)	2094
Bsp119I	TTCGAA	1 cut(s)	1323
Bsp1286I	GDGCHC	2 cut(s)	1017, 1548
Bsp13I	TCCGGA	1 cut(s)	1904
Bsp19I	CCATGG	1 cut(s)	510
BspACI	CCGC	6 cut(s)	235, 273, 349, 351, 2177, 2228
BspANI	GGCC	5 cut(s)	93, 150, 245, 1131, 2307
BspCNI	CTCAG	4 cut(s)	937, 1478, 1534, 2164
BspEI	TCCGGA	1 cut(s)	1904
BspFNI	CGCG	3 cut(s)	330, 332, 351
BspHI	TCATGA	2 cut(s)	450, 973
BspLI	GGNNCC	6 cut(s)	86, 355, 606, 1037, 1400, 1655
BspMI	ACCTGC	1 cut(s)	1890
BspOI	GCTAGC	1 cut(s)	68
BspPI	GGATC	3 cut(s)	425, 611, 2531
BspT104I	TTCGAA	1 cut(s)	1323
BspT107I	GGYRCC	2 cut(s)	84, 604
BspTNI	GGTCTC	1 cut(s)	2052
BsrDI	GCAATG	4 cut(s)	496, 1515, 1834, 2067
BsrFI	RCCGGY	1 cut(s)	146
BsrI	ACTGG	3 cut(s)	583, 620, 1755
BssAI	RCCGGY	1 cut(s)	146
BssHII	GCGCGC	2 cut(s)	328, 330
BssSI	CACGAG	4 cut(s)	1680, 1952, 2133, 2424
BssT1I	CCWWGG	4 cut(s)	309, 510, 567, 2308
Bst2BI	CACGAG	4 cut(s)	1680, 1952, 2133, 2424
Bst2UI	CCWGG	2 cut(s)	479, 1040
Bst4CI	ACNGT	6 cut(s)	1150, 1235, 1247, 1367, 1407, 2547
Bst6I	CTCTTC	4 cut(s)	142, 671, 1573, 1588
BstBI	TTCGAA	1 cut(s)	1323
BstC8I	GCNNGC	9 cut(s)	20, 66, 166, 330, 332, 336, 1190, 2226, 2365
BstDEI	CTNAG	7 cut(s)	424, 945, 1465, 1542, 2004, 2075, 2172
BstDSI	CCRYGG	3 cut(s)	349, 510, 1850
BstEII	GGTNACC	1 cut(s)	275
BstF5I	GGATG	5 cut(s)	640, 1132, 1162, 1751, 1867
BstFNI	CGCG	3 cut(s)	330, 332, 351
BstHHI	GCGC	4 cut(s)	330, 332, 334, 1194
BstMAI	GTCTC	7 cut(s)	511, 1055, 1139, 1468, 1832, 2052, 2130
BstMCI	CGRYCG	1 cut(s)	2265
BstMWI	GCNNNNNNNGC	3 cut(s)	314, 1128, 2340
BstNI	CCWGG	2 cut(s)	479, 1040
BstNSI	RCATGY	1 cut(s)	767
BstPAI	GACNNNNGTC	1 cut(s)	2496
BstPI	GGTNACC	1 cut(s)	275
BstSCI	CCNGG	3 cut(s)	240, 477, 1038
BstSFI	CTRYAG	1 cut(s)	39
BstUI	CGCG	3 cut(s)	330, 332, 351
BstV1I	GCAGC	7 cut(s)	34, 304, 382, 385, 1227, 1300, 2321
BstV2I	GAAGAC	2 cut(s)	2403, 2492
BstX2I	RGATCY	2 cut(s)	616, 928
BstXI	CCANNNNNNTGG	1 cut(s)	310
BstYI	RGATCY	2 cut(s)	616, 928
BsuRI	GGCC	5 cut(s)	93, 150, 245, 1131, 2307
BtgI	CCRYGG	3 cut(s)	349, 510, 1850
BtsCI	GGATG	5 cut(s)	640, 1132, 1162, 1751, 1867
BtsI	GCAGTG	1 cut(s)	393
BtsIMutI	CAGTG	6 cut(s)	393, 606, 1240, 1252, 1372, 1762
BveI	ACCTGC	1 cut(s)	1890
Cac8I	GCNNGC	9 cut(s)	20, 66, 166, 330, 332, 336, 1190, 2226, 2365
CaiI	CAGNNNCTG	1 cut(s)	47
CciI	TCATGA	2 cut(s)	450, 973
CfoI	GCGC	4 cut(s)	330, 332, 334, 1194
Cfr10I	RCCGGY	1 cut(s)	146
Cfr13I	GGNCC	2 cut(s)	1654, 1902
Cfr42I	CCGCGG	1 cut(s)	352
CsiI	ACCWGGT	1 cut(s)	1038
Csp6I	GTAC	5 cut(s)	474, 605, 1218, 1408, 1714
CviQI	GTAC	5 cut(s)	474, 605, 1218, 1408, 1714
DdeI	CTNAG	7 cut(s)	424, 945, 1465, 1542, 2004, 2075, 2172
DrdI	GACNNNNNNGTC	1 cut(s)	1691
DseDI	GACNNNNNNGTC	1 cut(s)	1691
EaeI	YGGCCR	1 cut(s)	1129
Eam1104I	CTCTTC	4 cut(s)	142, 671, 1573, 1588
EarI	CTCTTC	4 cut(s)	142, 671, 1573, 1588
Ecl136II	GAGCTC	1 cut(s)	1546
Eco130I	CCWWGG	4 cut(s)	309, 510, 567, 2308
Eco24I	GRGCYC	1 cut(s)	1548
Eco31I	GGTCTC	1 cut(s)	2052
Eco32I	GATATC	1 cut(s)	1671
Eco47I	GGWCC	2 cut(s)	1654, 1902
Eco53kI	GAGCTC	1 cut(s)	1546
Eco57I	CTGAAG	1 cut(s)	1290
Eco88I	CYCGRG	1 cut(s)	2094
Eco91I	GGTNACC	1 cut(s)	275
EcoICRI	GAGCTC	1 cut(s)	1546
EcoO65I	GGTNACC	1 cut(s)	275
EcoRII	CCWGG	2 cut(s)	477, 1038
EcoRV	GATATC	1 cut(s)	1671
EcoT14I	CCWWGG	4 cut(s)	309, 510, 567, 2308
EcoT22I	ATGCAT	1 cut(s)	1834
EcoT38I	GRGCYC	1 cut(s)	1548
ErhI	CCWWGG	4 cut(s)	309, 510, 567, 2308
Esp3I	CGTCTC	1 cut(s)	2130
FalI	AAGNNNNNCTT	2 cut(s)	2292, 2324
FaqI	GGGAC	1 cut(s)	1667
FauNDI	CATATG	1 cut(s)	1606
FbaI	TGATCA	3 cut(s)	976, 1020, 2476
FblI	GTMKAC	2 cut(s)	1253, 2090
Fnu4HI	GCNGC	8 cut(s)	48, 318, 349, 371, 374, 1241, 1289, 2335
FokI	GGATG	5 cut(s)	647, 1119, 1149, 1738, 1874
FriOI	GRGCYC	1 cut(s)	1548
Fsp4HI	GCNGC	8 cut(s)	48, 318, 349, 371, 374, 1241, 1289, 2335
FspBI	CTAG	9 cut(s)	65, 77, 383, 471, 614, 708, 843, 884, 957
GlaI	GCGC	4 cut(s)	329, 331, 333, 1193
GluI	GCNGC	8 cut(s)	48, 318, 349, 371, 374, 1241, 1289, 2335
GsaI	CCCAGC	1 cut(s)	465
GsuI	CTGGAG	2 cut(s)	422, 566
HaeIII	GGCC	5 cut(s)	93, 150, 245, 1131, 2307
HapII	CCGG	4 cut(s)	147, 242, 1596, 1905
HhaI	GCGC	4 cut(s)	330, 332, 334, 1194
Hin6I	GCGC	4 cut(s)	328, 330, 332, 1192
HinP1I	GCGC	4 cut(s)	328, 330, 332, 1192
HincII	GTYRAC	1 cut(s)	2091
HindII	GTYRAC	1 cut(s)	2091
HindIII	AAGCTT	1 cut(s)	2341
HpaII	CCGG	4 cut(s)	147, 242, 1596, 1905
HphI	GGTGA	9 cut(s)	176, 269, 332, 673, 707, 811, 1070, 1569, 2486
Hpy166II	GTNNAC	2 cut(s)	1254, 2091
Hpy188I	TCNGA	8 cut(s)	1284, 1455, 1474, 1543, 1675, 1785, 1916, 2395
Hpy8I	GTNNAC	2 cut(s)	1254, 2091
Hpy99I	CGWCG	1 cut(s)	2092
HpyCH4III	ACNGT	6 cut(s)	1150, 1235, 1247, 1367, 1407, 2547
HpyF10VI	GCNNNNNNNGC	3 cut(s)	314, 1128, 2340
HpyF3I	CTNAG	7 cut(s)	424, 945, 1465, 1542, 2004, 2075, 2172
HspAI	GCGC	4 cut(s)	328, 330, 332, 1192
Kpn2I	TCCGGA	1 cut(s)	1904
KpnI	GGTACC	1 cut(s)	608
Ksp22I	TGATCA	3 cut(s)	976, 1020, 2476
KspI	CCGCGG	1 cut(s)	352
LmnI	GCTCC	6 cut(s)	403, 891, 1012, 1027, 1074, 1404
Lsp1109I	GCAGC	7 cut(s)	34, 304, 382, 385, 1227, 1300, 2321
LweI	GCATC	2 cut(s)	1109, 2305
MabI	ACCWGGT	1 cut(s)	1038
MaeI	CTAG	9 cut(s)	65, 77, 383, 471, 614, 708, 843, 884, 957
MfeI	CAATTG	1 cut(s)	2484
MflI	RGATCY	2 cut(s)	616, 928
MhlI	GDGCHC	2 cut(s)	1017, 1548
MlsI	TGGCCA	1 cut(s)	1131
MluNI	TGGCCA	1 cut(s)	1131
MlyI	GAGTC	7 cut(s)	456, 1207, 1259, 1546, 2086, 2096, 2438
MmeI	TCCRAC	3 cut(s)	327, 1426, 1996
Mox20I	TGGCCA	1 cut(s)	1131
Mph1103I	ATGCAT	1 cut(s)	1834
MroI	TCCGGA	1 cut(s)	1904
MscI	TGGCCA	1 cut(s)	1131
MseI	TTAA	3 cut(s)	1053, 2187, 2253
MslI	CAYNNNNRTG	2 cut(s)	193, 1022
Msp20I	TGGCCA	1 cut(s)	1131
MspA1I	CMGCKG	2 cut(s)	351, 1211
MspI	CCGG	4 cut(s)	147, 242, 1596, 1905
MspR9I	CCNGG	3 cut(s)	242, 479, 1040
MunI	CAATTG	1 cut(s)	2484
Mva1269I	GAATGC	2 cut(s)	1313, 1525
MvaI	CCWGG	2 cut(s)	479, 1040
MvnI	CGCG	3 cut(s)	330, 332, 351
MwoI	GCNNNNNNNGC	3 cut(s)	314, 1128, 2340
NciI	CCSGG	1 cut(s)	242
NcoI	CCATGG	1 cut(s)	510
NdeI	CATATG	1 cut(s)	1606
NheI	GCTAGC	1 cut(s)	64
NlaIV	GGNNCC	6 cut(s)	86, 355, 606, 1037, 1400, 1655
NmuCI	GTSAC	6 cut(s)	103, 275, 637, 1204, 1301, 1682
NsiI	ATGCAT	1 cut(s)	1834
NspI	RCATGY	1 cut(s)	767
NspV	TTCGAA	1 cut(s)	1323
PagI	TCATGA	2 cut(s)	450, 973
PauI	GCGCGC	2 cut(s)	328, 330
PciI	ACATGT	1 cut(s)	763
PctI	GAATGC	2 cut(s)	1313, 1525
PfeI	GAWTC	5 cut(s)	589, 1370, 2166, 2414, 2507
PkrI	GCNGC	8 cut(s)	49, 319, 350, 372, 375, 1242, 1290, 2336
Ple19I	CGATCG	1 cut(s)	2265
PleI	GAGTC	7 cut(s)	455, 1206, 1258, 1546, 2086, 2096, 2437
PpsI	GAGTC	7 cut(s)	455, 1206, 1258, 1546, 2086, 2096, 2437
PscI	ACATGT	1 cut(s)	763
PshAI	GACNNNNGTC	1 cut(s)	2496
PshBI	ATTAAT	1 cut(s)	1053
Psp124BI	GAGCTC	1 cut(s)	1548
Psp6I	CCWGG	2 cut(s)	477, 1038
PspEI	GGTNACC	1 cut(s)	275
PspFI	CCCAGC	1 cut(s)	461
PspGI	CCWGG	2 cut(s)	477, 1038
PspN4I	GGNNCC	6 cut(s)	86, 355, 606, 1037, 1400, 1655
PspPI	GGNCC	2 cut(s)	1654, 1902
PstNI	CAGNNNCTG	1 cut(s)	47
PsuI	RGATCY	2 cut(s)	616, 928
PteI	GCGCGC	2 cut(s)	328, 330
PvuI	CGATCG	1 cut(s)	2265
PvuII	CAGCTG	1 cut(s)	1211
RsaI	GTAC	5 cut(s)	475, 606, 1219, 1409, 1715
RsaNI	GTAC	5 cut(s)	474, 605, 1218, 1408, 1714
RseI	CAYNNNNRTG	2 cut(s)	193, 1022
SacI	GAGCTC	1 cut(s)	1548
SacII	CCGCGG	1 cut(s)	352
SalI	GTCGAC	1 cut(s)	2089
SaqAI	TTAA	3 cut(s)	1053, 2187, 2253
SatI	GCNGC	8 cut(s)	48, 318, 349, 371, 374, 1241, 1289, 2335
Sau96I	GGNCC	2 cut(s)	1654, 1902
ScaI	AGTACT	1 cut(s)	1219
SchI	GAGTC	7 cut(s)	456, 1207, 1259, 1546, 2086, 2096, 2438
ScrFI	CCNGG	3 cut(s)	242, 479, 1040
SduI	GDGCHC	2 cut(s)	1017, 1548
SexAI	ACCWGGT	1 cut(s)	1038
SfaNI	GCATC	2 cut(s)	1109, 2305
SfcI	CTRYAG	1 cut(s)	39
Sfr303I	CCGCGG	1 cut(s)	352
SfuI	TTCGAA	1 cut(s)	1323
SgrBI	CCGCGG	1 cut(s)	352
SinI	GGWCC	2 cut(s)	1654, 1902
SmiMI	CAYNNNNRTG	2 cut(s)	193, 1022
SmlI	CTYRAG	6 cut(s)	206, 875, 932, 1142, 1195, 1547
SmoI	CTYRAG	6 cut(s)	206, 875, 932, 1142, 1195, 1547
SpeI	ACTAGT	1 cut(s)	956
SsiI	CCGC	6 cut(s)	235, 273, 349, 351, 2177, 2228
SspI	AATATT	2 cut(s)	1447, 1563
SspMI	CTAG	9 cut(s)	65, 77, 383, 471, 614, 708, 843, 884, 957
SstI	GAGCTC	1 cut(s)	1548
StyD4I	CCNGG	3 cut(s)	240, 477, 1038
StyI	CCWWGG	4 cut(s)	309, 510, 567, 2308
TaaI	ACNGT	6 cut(s)	1150, 1235, 1247, 1367, 1407, 2547
TaqI	TCGA	6 cut(s)	1323, 1695, 2090, 2265, 2288, 2351
TatI	WGTACW	3 cut(s)	1217, 1407, 1713
TauI	GCSGC	1 cut(s)	351
TfiI	GAWTC	5 cut(s)	589, 1370, 2166, 2414, 2507
Tru1I	TTAA	3 cut(s)	1053, 2187, 2253
Tru9I	TTAA	3 cut(s)	1053, 2187, 2253
TscAI	CASTG	6 cut(s)	393, 606, 1240, 1252, 1372, 1762
TseFI	GTSAC	6 cut(s)	103, 275, 637, 1204, 1301, 1682
TseI	GCWGC	7 cut(s)	47, 317, 370, 373, 1240, 1288, 2334
Tsp45I	GTSAC	6 cut(s)	103, 275, 637, 1204, 1301, 1682
TspDTI	ATGAA	5 cut(s)	1151, 1439, 1526, 1593, 1740
TspRI	CASTG	6 cut(s)	393, 606, 1240, 1252, 1372, 1762
VpaK11BI	GGWCC	2 cut(s)	1654, 1902
VspI	ATTAAT	1 cut(s)	1053
XapI	RAATTY	4 cut(s)	655, 803, 2284, 2535
XbaI	TCTAGA	2 cut(s)	613, 842
XceI	RCATGY	1 cut(s)	767
XcmI	CCANNNNNNNNNTGG	2 cut(s)	262, 1762
XmiI	GTMKAC	2 cut(s)	1253, 2090
XspI	CTAG	9 cut(s)	65, 77, 383, 471, 614, 708, 843, 884, 957
ZrmI	AGTACT	1 cut(s)	1219
Zsp2I	ATGCAT	1 cut(s)	1834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.