Clp amino terminal domain, pathogenicity island component
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G52490 |
| fragaria_vesca | FvH4_6g20090 |
| malus_domestica | MD12G1037900.v1.1 MD14G1036900.v1.1 |
| prunus_persica | Prupe.7G097400_v2.0.a1 |
| pyrus_communis | pycom12g03280 pycom14g03230 |
| rosa_chinensis | RchiOBHm_Chr3g0475541 |
| rosa_laevigata | RLG00000023834 |
| rosa_multiflora | Rmu_sc0000539.1_g000022 |
| rosa_roxburghii | Rroxscaffold_6G00406190 |
| rosa_rugosa | Rorug03G0150400 |
| rosa_samantha | Rh3AG199900 Rh3BG230100 Rh3CG224600 Rh3DG225200 |
| rosa_wichuraiana | Rw3G018130 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1674 |
| AccI | GTMKAC | 1 cut(s) | 1250 |
| AccII | CGCG | 1 cut(s) | 2240 |
| AciI | CCGC | 7 cut(s) | 162, 235, 311, 1338, 1524, 2240, 2297 |
| AclWI | GGATC | 4 cut(s) | 419, 647, 1298, 1705 |
| AcoI | YGGCCR | 2 cut(s) | 91, 1141 |
| AcsI | RAATTY | 4 cut(s) | 694, 824, 1947, 2631 |
| AcuI | CTGAAG | 1 cut(s) | 1794 |
| AfaI | GTAC | 6 cut(s) | 469, 870, 1368, 1436, 1455, 1745 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 81, 602 |
| AhlI | ACTAGT | 1 cut(s) | 1763 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 377, 409, 2361, 2393 |
| Alw21I | GWGCWC | 1 cut(s) | 328 |
| Alw26I | GTCTC | 4 cut(s) | 505, 1151, 2199, 2532 |
| AlwI | GGATC | 4 cut(s) | 419, 647, 1298, 1705 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 47 |
| Ama87I | CYCGRG | 1 cut(s) | 2163 |
| AoxI | GGCC | 4 cut(s) | 91, 148, 1141, 2468 |
| ApoI | RAATTY | 4 cut(s) | 694, 824, 1947, 2631 |
| AseI | ATTAAT | 1 cut(s) | 1577 |
| AspS9I | GGNCC | 1 cut(s) | 2468 |
| AsuHPI | GGTGA | 7 cut(s) | 176, 266, 326, 832, 1166, 1584, 1996 |
| AsuII | TTCGAA | 1 cut(s) | 1079 |
| AvaI | CYCGRG | 1 cut(s) | 2163 |
| BalI | TGGCCA | 2 cut(s) | 93, 1143 |
| BanI | GGYRCC | 1 cut(s) | 1674 |
| BbsI | GAAGAC | 1 cut(s) | 2588 |
| Bbv12I | GWGCWC | 1 cut(s) | 328 |
| BccI | CCATC | 7 cut(s) | 299, 623, 1099, 1152, 1156, 1999, 2015 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 147, 181 |
| BclI | TGATCA | 4 cut(s) | 991, 1029, 1243, 1723 |
| BcoDI | GTCTC | 4 cut(s) | 505, 1151, 2199, 2532 |
| BcuI | ACTAGT | 1 cut(s) | 1763 |
| BfmI | CTRYAG | 2 cut(s) | 648, 2185 |
| BglII | AGATCT | 1 cut(s) | 949 |
| BmcAI | AGTACT | 1 cut(s) | 1455 |
| BmeT110I | CYCGRG | 1 cut(s) | 2163 |
| BmgT120I | GGNCC | 1 cut(s) | 2468 |
| BmiI | GGNNCC | 3 cut(s) | 1427, 1676, 2116 |
| BmrI | ACTGGG | 1 cut(s) | 1725 |
| BmsI | GCATC | 3 cut(s) | 94, 1669, 2374 |
| BmuI | ACTGGG | 1 cut(s) | 1725 |
| BoxI | GACNNNNGTC | 2 cut(s) | 859, 2592 |
| BpiI | GAAGAC | 1 cut(s) | 2588 |
| BpmI | CTGGAG | 1 cut(s) | 1175 |
| Bpu14I | TTCGAA | 1 cut(s) | 1079 |
| BpuEI | CTTGAG | 2 cut(s) | 227, 312 |
| Bsa29I | ATCGAT | 1 cut(s) | 2579 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1135 |
| BsaJI | CCNNGG | 4 cut(s) | 303, 549, 1557, 1922 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 786, 816, 2234, 2264 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 81, 602 |
| Bse1I | ACTGG | 3 cut(s) | 638, 1276, 1731 |
| Bse3DI | GCAATG | 2 cut(s) | 490, 2136 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1135 |
| BseCI | ATCGAT | 1 cut(s) | 2579 |
| BseDI | CCNNGG | 4 cut(s) | 303, 549, 1557, 1922 |
| BseGI | GGATG | 4 cut(s) | 679, 1110, 1144, 1598 |
| BseJI | GATNNNNATC | 1 cut(s) | 1135 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 81, 602 |
| BseMI | GCAATG | 2 cut(s) | 490, 2136 |
| BseMII | CTCAG | 3 cut(s) | 967, 1341, 2169 |
| BseNI | ACTGG | 3 cut(s) | 638, 1276, 1731 |
| BseRI | GAGGAG | 4 cut(s) | 99, 783, 835, 2430 |
| BseYI | CCCAGC | 2 cut(s) | 241, 455 |
| Bsh1236I | CGCG | 1 cut(s) | 2240 |
| BshFI | GGCC | 4 cut(s) | 93, 150, 1143, 2470 |
| BshNI | GGYRCC | 1 cut(s) | 1674 |
| BshVI | ATCGAT | 1 cut(s) | 2579 |
| BsiHKAI | GWGCWC | 1 cut(s) | 328 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2163 |
| BslFI | GGGAC | 1 cut(s) | 1904 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 81, 602 |
| BsmAI | GTCTC | 4 cut(s) | 505, 1151, 2199, 2532 |
| BsmBI | CGTCTC | 1 cut(s) | 2199 |
| BsmFI | GGGAC | 1 cut(s) | 1904 |
| BsmI | GAATGC | 1 cut(s) | 1337 |
| BsnI | GGCC | 4 cut(s) | 93, 150, 1143, 2470 |
| BsoBI | CYCGRG | 1 cut(s) | 2163 |
| Bsp119I | TTCGAA | 1 cut(s) | 1079 |
| Bsp1286I | GDGCHC | 1 cut(s) | 328 |
| Bsp1407I | TGTACA | 2 cut(s) | 1366, 1743 |
| Bsp19I | CCATGG | 1 cut(s) | 1922 |
| BspACI | CCGC | 7 cut(s) | 162, 235, 311, 1338, 1524, 2240, 2297 |
| BspANI | GGCC | 4 cut(s) | 93, 150, 1143, 2470 |
| BspCNI | CTCAG | 3 cut(s) | 966, 1340, 2170 |
| BspDI | ATCGAT | 1 cut(s) | 2579 |
| BspFNI | CGCG | 1 cut(s) | 2240 |
| BspHI | TCATGA | 2 cut(s) | 444, 2473 |
| BspLI | GGNNCC | 3 cut(s) | 1427, 1676, 2116 |
| BspMAI | CTGCAG | 1 cut(s) | 2189 |
| BspPI | GGATC | 4 cut(s) | 419, 647, 1298, 1705 |
| BspT104I | TTCGAA | 1 cut(s) | 1079 |
| BspT107I | GGYRCC | 1 cut(s) | 1674 |
| BsrDI | GCAATG | 2 cut(s) | 490, 2136 |
| BsrGI | TGTACA | 2 cut(s) | 1366, 1743 |
| BsrI | ACTGG | 3 cut(s) | 638, 1276, 1731 |
| BssECI | CCNNGG | 4 cut(s) | 303, 549, 1557, 1922 |
| BssT1I | CCWWGG | 3 cut(s) | 303, 549, 1922 |
| Bst4CI | ACNGT | 3 cut(s) | 1162, 1394, 1434 |
| Bst6I | CTCTTC | 1 cut(s) | 1588 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1386 |
| BstAUI | TGTACA | 2 cut(s) | 1366, 1743 |
| BstBI | TTCGAA | 1 cut(s) | 1079 |
| BstC8I | GCNNGC | 7 cut(s) | 66, 124, 166, 324, 1202, 2295, 2434 |
| BstDEI | CTNAG | 6 cut(s) | 953, 1327, 1457, 2073, 2144, 2178 |
| BstDSI | CCRYGG | 1 cut(s) | 1922 |
| BstF5I | GGATG | 4 cut(s) | 679, 1110, 1144, 1598 |
| BstFNI | CGCG | 1 cut(s) | 2240 |
| BstMAI | GTCTC | 4 cut(s) | 505, 1151, 2199, 2532 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 308, 643, 1332, 1386, 1657 |
| BstNSI | RCATGY | 1 cut(s) | 684 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 859, 2592 |
| BstSFI | CTRYAG | 2 cut(s) | 648, 2185 |
| BstUI | CGCG | 1 cut(s) | 2240 |
| BstV2I | GAAGAC | 1 cut(s) | 2588 |
| BstX2I | RGATCY | 4 cut(s) | 652, 949, 1303, 1697 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 304, 344 |
| BstYI | RGATCY | 4 cut(s) | 652, 949, 1303, 1697 |
| Bsu15I | ATCGAT | 1 cut(s) | 2579 |
| BsuRI | GGCC | 4 cut(s) | 93, 150, 1143, 2470 |
| BsuTUI | ATCGAT | 1 cut(s) | 2579 |
| BtgI | CCRYGG | 1 cut(s) | 1922 |
| BtsCI | GGATG | 4 cut(s) | 679, 1110, 1144, 1598 |
| BtsI | GCAGTG | 4 cut(s) | 387, 1468, 1899, 2253 |
| BtsIMutI | CAGTG | 7 cut(s) | 387, 645, 1218, 1399, 1468, 1899, 2253 |
| Cac8I | GCNNGC | 7 cut(s) | 66, 124, 166, 324, 1202, 2295, 2434 |
| CaiI | CAGNNNCTG | 1 cut(s) | 47 |
| CciI | TCATGA | 2 cut(s) | 444, 2473 |
| Cfr13I | GGNCC | 1 cut(s) | 2468 |
| ClaI | ATCGAT | 1 cut(s) | 2579 |
| CseI | GACGC | 1 cut(s) | 2625 |
| Csp6I | GTAC | 6 cut(s) | 468, 869, 1367, 1435, 1454, 1744 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2341, 2376 |
| CviQI | GTAC | 6 cut(s) | 468, 869, 1367, 1435, 1454, 1744 |
| DdeI | CTNAG | 6 cut(s) | 953, 1327, 1457, 2073, 2144, 2178 |
| EaeI | YGGCCR | 2 cut(s) | 91, 1141 |
| Eam1104I | CTCTTC | 1 cut(s) | 1588 |
| EarI | CTCTTC | 1 cut(s) | 1588 |
| EciI | GGCGGA | 1 cut(s) | 1327 |
| Eco130I | CCWWGG | 3 cut(s) | 303, 549, 1922 |
| Eco147I | AGGCCT | 1 cut(s) | 150 |
| Eco32I | GATATC | 1 cut(s) | 1692 |
| Eco57I | CTGAAG | 1 cut(s) | 1794 |
| Eco88I | CYCGRG | 1 cut(s) | 2163 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2468 |
| EcoRV | GATATC | 1 cut(s) | 1692 |
| EcoT14I | CCWWGG | 3 cut(s) | 303, 549, 1922 |
| ErhI | CCWWGG | 3 cut(s) | 303, 549, 1922 |
| Esp3I | CGTCTC | 1 cut(s) | 2199 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2361, 2393 |
| FaqI | GGGAC | 1 cut(s) | 1904 |
| FauNDI | CATATG | 1 cut(s) | 1621 |
| FbaI | TGATCA | 4 cut(s) | 991, 1029, 1243, 1723 |
| FblI | GTMKAC | 1 cut(s) | 1250 |
| FokI | GGATG | 4 cut(s) | 686, 1117, 1131, 1585 |
| GsaI | CCCAGC | 2 cut(s) | 245, 459 |
| GsuI | CTGGAG | 1 cut(s) | 1175 |
| HaeIII | GGCC | 4 cut(s) | 93, 150, 1143, 2470 |
| HgaI | GACGC | 1 cut(s) | 2625 |
| HincII | GTYRAC | 1 cut(s) | 580 |
| HindII | GTYRAC | 1 cut(s) | 580 |
| HindIII | AAGCTT | 1 cut(s) | 884 |
| HinfI | GANTC | 7 cut(s) | 441, 1210, 1397, 2161, 2171, 2235, 2603 |
| HphI | GGTGA | 7 cut(s) | 176, 266, 326, 832, 1166, 1584, 1996 |
| Hpy166II | GTNNAC | 4 cut(s) | 580, 703, 960, 1251 |
| Hpy188I | TCNGA | 6 cut(s) | 1308, 1330, 1495, 1561, 2464, 2569 |
| Hpy8I | GTNNAC | 4 cut(s) | 580, 703, 960, 1251 |
| HpyCH4III | ACNGT | 3 cut(s) | 1162, 1394, 1434 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 308, 643, 1332, 1386, 1657 |
| HpyF3I | CTNAG | 6 cut(s) | 953, 1327, 1457, 2073, 2144, 2178 |
| Ksp22I | TGATCA | 4 cut(s) | 991, 1029, 1243, 1723 |
| LmnI | GCTCC | 5 cut(s) | 397, 1036, 1340, 1431, 2290 |
| LweI | GCATC | 3 cut(s) | 94, 1669, 2374 |
| MaeIII | GTNAC | 6 cut(s) | 70, 103, 919, 1216, 1483, 2012 |
| MboII | GAAGA | 9 cut(s) | 129, 132, 902, 1575, 2001, 2294, 2378, 2492, 2588 |
| MfeI | CAATTG | 3 cut(s) | 351, 600, 2331 |
| MflI | RGATCY | 4 cut(s) | 652, 949, 1303, 1697 |
| MhlI | GDGCHC | 1 cut(s) | 328 |
| MlsI | TGGCCA | 2 cut(s) | 93, 1143 |
| MluNI | TGGCCA | 2 cut(s) | 93, 1143 |
| MlyI | GAGTC | 3 cut(s) | 450, 1219, 2155 |
| MmeI | TCCRAC | 4 cut(s) | 321, 375, 1453, 1635 |
| Mox20I | TGGCCA | 2 cut(s) | 93, 1143 |
| MscI | TGGCCA | 2 cut(s) | 93, 1143 |
| MseI | TTAA | 5 cut(s) | 266, 1062, 1577, 2078, 2322 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1031, 1080 |
| Msp20I | TGGCCA | 2 cut(s) | 93, 1143 |
| MunI | CAATTG | 3 cut(s) | 351, 600, 2331 |
| Mva1269I | GAATGC | 1 cut(s) | 1337 |
| MvnI | CGCG | 1 cut(s) | 2240 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 308, 643, 1332, 1386, 1657 |
| NcoI | CCATGG | 1 cut(s) | 1922 |
| NdeI | CATATG | 1 cut(s) | 1621 |
| NlaIV | GGNNCC | 3 cut(s) | 1427, 1676, 2116 |
| NmuCI | GTSAC | 2 cut(s) | 919, 1216 |
| NspI | RCATGY | 1 cut(s) | 684 |
| NspV | TTCGAA | 1 cut(s) | 1079 |
| PaeR7I | CTCGAG | 1 cut(s) | 2163 |
| PagI | TCATGA | 2 cut(s) | 444, 2473 |
| PceI | AGGCCT | 1 cut(s) | 150 |
| PctI | GAATGC | 1 cut(s) | 1337 |
| PfeI | GAWTC | 4 cut(s) | 1397, 2171, 2235, 2603 |
| PleI | GAGTC | 3 cut(s) | 449, 1218, 2155 |
| PpsI | GAGTC | 3 cut(s) | 449, 1218, 2155 |
| PshAI | GACNNNNGTC | 2 cut(s) | 859, 2592 |
| PshBI | ATTAAT | 1 cut(s) | 1577 |
| PspFI | CCCAGC | 2 cut(s) | 241, 455 |
| PspN4I | GGNNCC | 3 cut(s) | 1427, 1676, 2116 |
| PspPI | GGNCC | 1 cut(s) | 2468 |
| PspXI | VCTCGAGB | 1 cut(s) | 2163 |
| PstI | CTGCAG | 1 cut(s) | 2189 |
| PstNI | CAGNNNCTG | 1 cut(s) | 47 |
| PsuI | RGATCY | 4 cut(s) | 652, 949, 1303, 1697 |
| RsaI | GTAC | 6 cut(s) | 469, 870, 1368, 1436, 1455, 1745 |
| RsaNI | GTAC | 6 cut(s) | 468, 869, 1367, 1435, 1454, 1744 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1031, 1080 |
| SaqAI | TTAA | 5 cut(s) | 266, 1062, 1577, 2078, 2322 |
| Sau96I | GGNCC | 1 cut(s) | 2468 |
| ScaI | AGTACT | 1 cut(s) | 1455 |
| SchI | GAGTC | 3 cut(s) | 450, 1219, 2155 |
| SduI | GDGCHC | 1 cut(s) | 328 |
| SfaNI | GCATC | 3 cut(s) | 94, 1669, 2374 |
| SfcI | CTRYAG | 2 cut(s) | 648, 2185 |
| Sfr274I | CTCGAG | 1 cut(s) | 2163 |
| SfuI | TTCGAA | 1 cut(s) | 1079 |
| SlaI | CTCGAG | 1 cut(s) | 2163 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1031, 1080 |
| SmlI | CTYRAG | 3 cut(s) | 206, 327, 2163 |
| SmoI | CTYRAG | 3 cut(s) | 206, 327, 2163 |
| SpeI | ACTAGT | 1 cut(s) | 1763 |
| SseBI | AGGCCT | 1 cut(s) | 150 |
| SsiI | CCGC | 7 cut(s) | 162, 235, 311, 1338, 1524, 2240, 2297 |
| StuI | AGGCCT | 1 cut(s) | 150 |
| StyI | CCWWGG | 3 cut(s) | 303, 549, 1922 |
| TaaI | ACNGT | 3 cut(s) | 1162, 1394, 1434 |
| TatI | WGTACW | 5 cut(s) | 868, 1366, 1434, 1453, 1743 |
| TauI | GCSGC | 1 cut(s) | 314 |
| TfiI | GAWTC | 4 cut(s) | 1397, 2171, 2235, 2603 |
| Tru1I | TTAA | 5 cut(s) | 266, 1062, 1577, 2078, 2322 |
| Tru9I | TTAA | 5 cut(s) | 266, 1062, 1577, 2078, 2322 |
| TscAI | CASTG | 7 cut(s) | 387, 645, 1225, 1399, 1468, 1906, 2253 |
| TseFI | GTSAC | 2 cut(s) | 919, 1216 |
| Tsp45I | GTSAC | 2 cut(s) | 919, 1216 |
| TspDTI | ATGAA | 5 cut(s) | 817, 1608, 1773, 2493, 2535 |
| TspGWI | ACGGA | 2 cut(s) | 1179, 2359 |
| TspRI | CASTG | 7 cut(s) | 387, 645, 1225, 1399, 1468, 1906, 2253 |
| VspI | ATTAAT | 1 cut(s) | 1577 |
| XapI | RAATTY | 4 cut(s) | 694, 824, 1947, 2631 |
| XbaI | TCTAGA | 1 cut(s) | 863 |
| XceI | RCATGY | 1 cut(s) | 684 |
| XhoI | CTCGAG | 1 cut(s) | 2163 |
| XmiI | GTMKAC | 1 cut(s) | 1250 |
| ZrmI | AGTACT | 1 cut(s) | 1455 |