Clp amino terminal domain, pathogenicity island component
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G52490 |
| fragaria_vesca | FvH4_6g20090 |
| malus_domestica | MD12G1037900.v1.1 MD14G1036900.v1.1 |
| prunus_persica | Prupe.7G097400_v2.0.a1 |
| pyrus_communis | pycom12g03280 pycom14g03230 |
| rosa_chinensis | RchiOBHm_Chr3g0475541 |
| rosa_laevigata | RLG00000023834 |
| rosa_multiflora | Rmu_sc0000539.1_g000022 |
| rosa_roxburghii | Rroxscaffold_6G00406190 |
| rosa_rugosa | Rorug03G0150400 |
| rosa_samantha | Rh3AG199900 Rh3BG230100 Rh3CG224600 Rh3DG225200 |
| rosa_wichuraiana | Rw3G018130 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1312 |
| AccB1I | GGYRCC | 1 cut(s) | 1659 |
| AciI | CCGC | 6 cut(s) | 162, 235, 311, 1323, 1509, 2285 |
| AclWI | GGATC | 4 cut(s) | 419, 1283, 1690, 1823 |
| AcoI | YGGCCR | 2 cut(s) | 91, 1126 |
| AcsI | RAATTY | 4 cut(s) | 679, 809, 1935, 2619 |
| AcuI | CTGAAG | 2 cut(s) | 1779, 2386 |
| AfaI | GTAC | 7 cut(s) | 469, 823, 855, 1353, 1421, 1440, 1730 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 81, 265, 266, 602 |
| AhlI | ACTAGT | 1 cut(s) | 1748 |
| AjnI | CCWGG | 1 cut(s) | 570 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 377, 409, 2349, 2381 |
| Alw21I | GWGCWC | 1 cut(s) | 328 |
| Alw26I | GTCTC | 4 cut(s) | 505, 1136, 2187, 2520 |
| AlwI | GGATC | 4 cut(s) | 419, 1283, 1690, 1823 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 47 |
| Ama87I | CYCGRG | 2 cut(s) | 2151, 2407 |
| AoxI | GGCC | 3 cut(s) | 91, 1126, 2456 |
| ApoI | RAATTY | 4 cut(s) | 679, 809, 1935, 2619 |
| AseI | ATTAAT | 1 cut(s) | 1562 |
| AspLEI | GCGC | 1 cut(s) | 1313 |
| AspS9I | GGNCC | 1 cut(s) | 2456 |
| AsuHPI | GGTGA | 7 cut(s) | 176, 266, 326, 817, 1151, 1195, 1569 |
| AsuII | TTCGAA | 1 cut(s) | 1064 |
| AvaI | CYCGRG | 2 cut(s) | 2151, 2407 |
| BalI | TGGCCA | 2 cut(s) | 93, 1128 |
| BanI | GGYRCC | 1 cut(s) | 1659 |
| BanII | GRGCYC | 1 cut(s) | 272 |
| BbsI | GAAGAC | 1 cut(s) | 2576 |
| Bbv12I | GWGCWC | 1 cut(s) | 328 |
| BccI | CCATC | 8 cut(s) | 299, 422, 623, 1084, 1137, 1141, 1987, 2003 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 147, 181 |
| BciT130I | CCWGG | 1 cut(s) | 572 |
| BclI | TGATCA | 5 cut(s) | 976, 1014, 1228, 1456, 1708 |
| BcoDI | GTCTC | 4 cut(s) | 505, 1136, 2187, 2520 |
| BcuI | ACTAGT | 1 cut(s) | 1748 |
| BfmI | CTRYAG | 2 cut(s) | 648, 2173 |
| BglII | AGATCT | 1 cut(s) | 934 |
| BmcAI | AGTACT | 1 cut(s) | 1440 |
| Bme1390I | CCNGG | 1 cut(s) | 572 |
| BmeT110I | CYCGRG | 2 cut(s) | 2151, 2407 |
| BmgT120I | GGNCC | 1 cut(s) | 2456 |
| BmiI | GGNNCC | 3 cut(s) | 1412, 1661, 2104 |
| BmrFI | CCNGG | 1 cut(s) | 572 |
| BmrI | ACTGGG | 1 cut(s) | 1710 |
| BmsI | GCATC | 3 cut(s) | 94, 1654, 2362 |
| BmuI | ACTGGG | 1 cut(s) | 1710 |
| BoxI | GACNNNNGTC | 2 cut(s) | 844, 2580 |
| BpiI | GAAGAC | 1 cut(s) | 2576 |
| BpmI | CTGGAG | 1 cut(s) | 1160 |
| Bpu14I | TTCGAA | 1 cut(s) | 1064 |
| BpuEI | CTTGAG | 3 cut(s) | 227, 312, 1162 |
| Bsa29I | ATCGAT | 1 cut(s) | 2567 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1120 |
| BsaJI | CCNNGG | 4 cut(s) | 303, 549, 1542, 1910 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 771, 801 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 81, 265, 266, 602 |
| Bse1I | ACTGG | 3 cut(s) | 638, 1261, 1716 |
| Bse3DI | GCAATG | 2 cut(s) | 490, 2124 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1120 |
| BseBI | CCWGG | 1 cut(s) | 572 |
| BseCI | ATCGAT | 1 cut(s) | 2567 |
| BseDI | CCNNGG | 4 cut(s) | 303, 549, 1542, 1910 |
| BseGI | GGATG | 4 cut(s) | 664, 1095, 1129, 1583 |
| BseJI | GATNNNNATC | 1 cut(s) | 1120 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 81, 265, 266, 602 |
| BseMI | GCAATG | 2 cut(s) | 490, 2124 |
| BseMII | CTCAG | 2 cut(s) | 952, 2157 |
| BseNI | ACTGG | 3 cut(s) | 638, 1261, 1716 |
| BseRI | GAGGAG | 4 cut(s) | 99, 768, 820, 2418 |
| BseYI | CCCAGC | 2 cut(s) | 241, 455 |
| BshFI | GGCC | 3 cut(s) | 93, 1128, 2458 |
| BshNI | GGYRCC | 1 cut(s) | 1659 |
| BshVI | ATCGAT | 1 cut(s) | 2567 |
| BsiHKAI | GWGCWC | 1 cut(s) | 328 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2151, 2407 |
| BslFI | GGGAC | 1 cut(s) | 1892 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 81, 265, 266, 602 |
| BsmAI | GTCTC | 4 cut(s) | 505, 1136, 2187, 2520 |
| BsmBI | CGTCTC | 1 cut(s) | 2187 |
| BsmFI | GGGAC | 1 cut(s) | 1892 |
| BsmI | GAATGC | 2 cut(s) | 1322, 2564 |
| BsnI | GGCC | 3 cut(s) | 93, 1128, 2458 |
| BsoBI | CYCGRG | 2 cut(s) | 2151, 2407 |
| Bsp119I | TTCGAA | 1 cut(s) | 1064 |
| Bsp1286I | GDGCHC | 2 cut(s) | 272, 328 |
| Bsp1407I | TGTACA | 2 cut(s) | 1351, 1728 |
| Bsp19I | CCATGG | 1 cut(s) | 1910 |
| BspACI | CCGC | 6 cut(s) | 162, 235, 311, 1323, 1509, 2285 |
| BspANI | GGCC | 3 cut(s) | 93, 1128, 2458 |
| BspCNI | CTCAG | 2 cut(s) | 951, 2158 |
| BspDI | ATCGAT | 1 cut(s) | 2567 |
| BspHI | TCATGA | 2 cut(s) | 444, 2461 |
| BspLI | GGNNCC | 3 cut(s) | 1412, 1661, 2104 |
| BspMAI | CTGCAG | 1 cut(s) | 2177 |
| BspPI | GGATC | 4 cut(s) | 419, 1283, 1690, 1823 |
| BspT104I | TTCGAA | 1 cut(s) | 1064 |
| BspT107I | GGYRCC | 1 cut(s) | 1659 |
| BsrDI | GCAATG | 2 cut(s) | 490, 2124 |
| BsrGI | TGTACA | 2 cut(s) | 1351, 1728 |
| BsrI | ACTGG | 3 cut(s) | 638, 1261, 1716 |
| BssECI | CCNNGG | 4 cut(s) | 303, 549, 1542, 1910 |
| BssT1I | CCWWGG | 3 cut(s) | 303, 549, 1910 |
| Bst2UI | CCWGG | 1 cut(s) | 572 |
| Bst4CI | ACNGT | 3 cut(s) | 1147, 1379, 1419 |
| Bst6I | CTCTTC | 1 cut(s) | 1573 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1371 |
| BstAUI | TGTACA | 2 cut(s) | 1351, 1728 |
| BstBI | TTCGAA | 1 cut(s) | 1064 |
| BstC8I | GCNNGC | 8 cut(s) | 66, 124, 166, 324, 1187, 2283, 2297, 2422 |
| BstDEI | CTNAG | 7 cut(s) | 376, 418, 938, 1442, 2061, 2132, 2166 |
| BstDSI | CCRYGG | 1 cut(s) | 1910 |
| BstF5I | GGATG | 4 cut(s) | 664, 1095, 1129, 1583 |
| BstHHI | GCGC | 1 cut(s) | 1313 |
| BstMAI | GTCTC | 4 cut(s) | 505, 1136, 2187, 2520 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 308, 643, 1317, 1371, 1642, 2397 |
| BstNI | CCWGG | 1 cut(s) | 572 |
| BstNSI | RCATGY | 1 cut(s) | 669 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 844, 2580 |
| BstSCI | CCNGG | 1 cut(s) | 570 |
| BstSFI | CTRYAG | 2 cut(s) | 648, 2173 |
| BstV2I | GAAGAC | 1 cut(s) | 2576 |
| BstX2I | RGATCY | 3 cut(s) | 934, 1288, 1682 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 304, 344 |
| BstYI | RGATCY | 3 cut(s) | 934, 1288, 1682 |
| Bsu15I | ATCGAT | 1 cut(s) | 2567 |
| BsuRI | GGCC | 3 cut(s) | 93, 1128, 2458 |
| BsuTUI | ATCGAT | 1 cut(s) | 2567 |
| BtgI | CCRYGG | 1 cut(s) | 1910 |
| BtsCI | GGATG | 4 cut(s) | 664, 1095, 1129, 1583 |
| BtsI | GCAGTG | 3 cut(s) | 1453, 1887, 2241 |
| BtsIMutI | CAGTG | 5 cut(s) | 645, 1384, 1453, 1887, 2241 |
| Cac8I | GCNNGC | 8 cut(s) | 66, 124, 166, 324, 1187, 2283, 2297, 2422 |
| CaiI | CAGNNNCTG | 1 cut(s) | 47 |
| CciI | TCATGA | 2 cut(s) | 444, 2461 |
| CfoI | GCGC | 1 cut(s) | 1313 |
| Cfr13I | GGNCC | 1 cut(s) | 2456 |
| ClaI | ATCGAT | 1 cut(s) | 2567 |
| Csp6I | GTAC | 7 cut(s) | 468, 822, 854, 1352, 1420, 1439, 1729 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2329, 2364 |
| CviQI | GTAC | 7 cut(s) | 468, 822, 854, 1352, 1420, 1439, 1729 |
| DdeI | CTNAG | 7 cut(s) | 376, 418, 938, 1442, 2061, 2132, 2166 |
| EaeI | YGGCCR | 2 cut(s) | 91, 1126 |
| Eam1104I | CTCTTC | 1 cut(s) | 1573 |
| EarI | CTCTTC | 1 cut(s) | 1573 |
| EciI | GGCGGA | 1 cut(s) | 1312 |
| Eco130I | CCWWGG | 3 cut(s) | 303, 549, 1910 |
| Eco24I | GRGCYC | 1 cut(s) | 272 |
| Eco32I | GATATC | 1 cut(s) | 1677 |
| Eco57I | CTGAAG | 2 cut(s) | 1779, 2386 |
| Eco88I | CYCGRG | 2 cut(s) | 2151, 2407 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2456 |
| EcoRII | CCWGG | 1 cut(s) | 570 |
| EcoRV | GATATC | 1 cut(s) | 1677 |
| EcoT14I | CCWWGG | 3 cut(s) | 303, 549, 1910 |
| EcoT38I | GRGCYC | 1 cut(s) | 272 |
| ErhI | CCWWGG | 3 cut(s) | 303, 549, 1910 |
| Esp3I | CGTCTC | 1 cut(s) | 2187 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2349, 2381 |
| FaqI | GGGAC | 1 cut(s) | 1892 |
| FauNDI | CATATG | 1 cut(s) | 1606 |
| FbaI | TGATCA | 5 cut(s) | 976, 1014, 1228, 1456, 1708 |
| FokI | GGATG | 4 cut(s) | 671, 1102, 1116, 1570 |
| FriOI | GRGCYC | 1 cut(s) | 272 |
| FspI | TGCGCA | 1 cut(s) | 1312 |
| GlaI | GCGC | 1 cut(s) | 1312 |
| GsaI | CCCAGC | 2 cut(s) | 245, 459 |
| GsuI | CTGGAG | 1 cut(s) | 1160 |
| HaeIII | GGCC | 3 cut(s) | 93, 1128, 2458 |
| HhaI | GCGC | 1 cut(s) | 1313 |
| Hin6I | GCGC | 1 cut(s) | 1311 |
| HinP1I | GCGC | 1 cut(s) | 1311 |
| HincII | GTYRAC | 1 cut(s) | 580 |
| HindII | GTYRAC | 1 cut(s) | 580 |
| HindIII | AAGCTT | 2 cut(s) | 869, 2398 |
| HinfI | GANTC | 7 cut(s) | 441, 1195, 1382, 2149, 2159, 2223, 2591 |
| HphI | GGTGA | 7 cut(s) | 176, 266, 326, 817, 1151, 1195, 1569 |
| Hpy166II | GTNNAC | 4 cut(s) | 580, 688, 945, 1236 |
| Hpy188I | TCNGA | 7 cut(s) | 1293, 1461, 1480, 1546, 1815, 2452, 2557 |
| Hpy8I | GTNNAC | 4 cut(s) | 580, 688, 945, 1236 |
| HpyCH4III | ACNGT | 3 cut(s) | 1147, 1379, 1419 |
| HpyCH4IV | ACGT | 2 cut(s) | 117, 2605 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 308, 643, 1317, 1371, 1642, 2397 |
| HpyF3I | CTNAG | 7 cut(s) | 376, 418, 938, 1442, 2061, 2132, 2166 |
| HpySE526I | ACGT | 2 cut(s) | 117, 2605 |
| HspAI | GCGC | 1 cut(s) | 1311 |
| Ksp22I | TGATCA | 5 cut(s) | 976, 1014, 1228, 1456, 1708 |
| LmnI | GCTCC | 6 cut(s) | 397, 1021, 1325, 1416, 1855, 2278 |
| LweI | GCATC | 3 cut(s) | 94, 1654, 2362 |
| MaeII | ACGT | 2 cut(s) | 117, 2605 |
| MaeIII | GTNAC | 6 cut(s) | 70, 103, 904, 1201, 1468, 2000 |
| MboII | GAAGA | 9 cut(s) | 129, 132, 887, 1560, 1989, 2282, 2366, 2480, 2576 |
| MfeI | CAATTG | 3 cut(s) | 351, 600, 2319 |
| MflI | RGATCY | 3 cut(s) | 934, 1288, 1682 |
| MhlI | GDGCHC | 2 cut(s) | 272, 328 |
| MlsI | TGGCCA | 2 cut(s) | 93, 1128 |
| MluNI | TGGCCA | 2 cut(s) | 93, 1128 |
| MlyI | GAGTC | 3 cut(s) | 450, 1204, 2143 |
| MmeI | TCCRAC | 4 cut(s) | 321, 375, 1438, 1620 |
| Mox20I | TGGCCA | 2 cut(s) | 93, 1128 |
| MscI | TGGCCA | 2 cut(s) | 93, 1128 |
| MseI | TTAA | 4 cut(s) | 1047, 1562, 2066, 2310 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1016, 1065 |
| Msp20I | TGGCCA | 2 cut(s) | 93, 1128 |
| MspR9I | CCNGG | 1 cut(s) | 572 |
| MunI | CAATTG | 3 cut(s) | 351, 600, 2319 |
| Mva1269I | GAATGC | 2 cut(s) | 1322, 2564 |
| MvaI | CCWGG | 1 cut(s) | 572 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 308, 643, 1317, 1371, 1642, 2397 |
| NcoI | CCATGG | 1 cut(s) | 1910 |
| NdeI | CATATG | 1 cut(s) | 1606 |
| NlaIV | GGNNCC | 3 cut(s) | 1412, 1661, 2104 |
| NmuCI | GTSAC | 2 cut(s) | 904, 1201 |
| NsbI | TGCGCA | 1 cut(s) | 1312 |
| NspI | RCATGY | 1 cut(s) | 669 |
| NspV | TTCGAA | 1 cut(s) | 1064 |
| PaeR7I | CTCGAG | 2 cut(s) | 2151, 2407 |
| PagI | TCATGA | 2 cut(s) | 444, 2461 |
| PctI | GAATGC | 2 cut(s) | 1322, 2564 |
| PfeI | GAWTC | 4 cut(s) | 1382, 2159, 2223, 2591 |
| PleI | GAGTC | 3 cut(s) | 449, 1203, 2143 |
| PpsI | GAGTC | 3 cut(s) | 449, 1203, 2143 |
| PshAI | GACNNNNGTC | 2 cut(s) | 844, 2580 |
| PshBI | ATTAAT | 1 cut(s) | 1562 |
| Psp6I | CCWGG | 1 cut(s) | 570 |
| PspFI | CCCAGC | 2 cut(s) | 241, 455 |
| PspGI | CCWGG | 1 cut(s) | 570 |
| PspN4I | GGNNCC | 3 cut(s) | 1412, 1661, 2104 |
| PspPI | GGNCC | 1 cut(s) | 2456 |
| PspXI | VCTCGAGB | 1 cut(s) | 2151 |
| PstI | CTGCAG | 1 cut(s) | 2177 |
| PstNI | CAGNNNCTG | 1 cut(s) | 47 |
| PsuI | RGATCY | 3 cut(s) | 934, 1288, 1682 |
| RsaI | GTAC | 7 cut(s) | 469, 823, 855, 1353, 1421, 1440, 1730 |
| RsaNI | GTAC | 7 cut(s) | 468, 822, 854, 1352, 1420, 1439, 1729 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1016, 1065 |
| SaqAI | TTAA | 4 cut(s) | 1047, 1562, 2066, 2310 |
| Sau96I | GGNCC | 1 cut(s) | 2456 |
| ScaI | AGTACT | 1 cut(s) | 1440 |
| SchI | GAGTC | 3 cut(s) | 450, 1204, 2143 |
| ScrFI | CCNGG | 1 cut(s) | 572 |
| SduI | GDGCHC | 2 cut(s) | 272, 328 |
| SfaNI | GCATC | 3 cut(s) | 94, 1654, 2362 |
| SfcI | CTRYAG | 2 cut(s) | 648, 2173 |
| Sfr274I | CTCGAG | 2 cut(s) | 2151, 2407 |
| SfuI | TTCGAA | 1 cut(s) | 1064 |
| SlaI | CTCGAG | 2 cut(s) | 2151, 2407 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1016, 1065 |
| SmlI | CTYRAG | 5 cut(s) | 206, 327, 1177, 2151, 2407 |
| SmoI | CTYRAG | 5 cut(s) | 206, 327, 1177, 2151, 2407 |
| SpeI | ACTAGT | 1 cut(s) | 1748 |
| SsiI | CCGC | 6 cut(s) | 162, 235, 311, 1323, 1509, 2285 |
| StyD4I | CCNGG | 1 cut(s) | 570 |
| StyI | CCWWGG | 3 cut(s) | 303, 549, 1910 |
| TaaI | ACNGT | 3 cut(s) | 1147, 1379, 1419 |
| TaiI | ACGT | 2 cut(s) | 120, 2608 |
| TatI | WGTACW | 5 cut(s) | 853, 1351, 1419, 1438, 1728 |
| TauI | GCSGC | 1 cut(s) | 314 |
| TfiI | GAWTC | 4 cut(s) | 1382, 2159, 2223, 2591 |
| Tru1I | TTAA | 4 cut(s) | 1047, 1562, 2066, 2310 |
| Tru9I | TTAA | 4 cut(s) | 1047, 1562, 2066, 2310 |
| TscAI | CASTG | 5 cut(s) | 645, 1384, 1453, 1894, 2241 |
| TseFI | GTSAC | 2 cut(s) | 904, 1201 |
| Tsp45I | GTSAC | 2 cut(s) | 904, 1201 |
| TspDTI | ATGAA | 5 cut(s) | 802, 1593, 1758, 2481, 2523 |
| TspGWI | ACGGA | 1 cut(s) | 2347 |
| TspRI | CASTG | 5 cut(s) | 645, 1384, 1453, 1894, 2241 |
| VspI | ATTAAT | 1 cut(s) | 1562 |
| XapI | RAATTY | 4 cut(s) | 679, 809, 1935, 2619 |
| XbaI | TCTAGA | 1 cut(s) | 848 |
| XceI | RCATGY | 1 cut(s) | 669 |
| XhoI | CTCGAG | 2 cut(s) | 2151, 2407 |
| ZrmI | AGTACT | 1 cut(s) | 1440 |