Clp amino terminal domain, pathogenicity island component
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G52490 |
| fragaria_vesca | FvH4_6g20090 |
| malus_domestica | MD12G1037900.v1.1 MD14G1036900.v1.1 |
| prunus_persica | Prupe.7G097400_v2.0.a1 |
| pyrus_communis | pycom12g03280 pycom14g03230 |
| rosa_chinensis | RchiOBHm_Chr3g0475541 |
| rosa_laevigata | RLG00000023834 |
| rosa_multiflora | Rmu_sc0000539.1_g000022 |
| rosa_roxburghii | Rroxscaffold_6G00406190 |
| rosa_rugosa | Rorug03G0150400 |
| rosa_samantha | Rh3AG199900 Rh3BG230100 Rh3CG224600 Rh3DG225200 |
| rosa_wichuraiana | Rw3G018130 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1324 |
| AccB1I | GGYRCC | 1 cut(s) | 1671 |
| AccI | GTMKAC | 1 cut(s) | 1247 |
| AciI | CCGC | 4 cut(s) | 162, 1521, 2237, 2294 |
| AclWI | GGATC | 1 cut(s) | 1702 |
| AcoI | YGGCCR | 2 cut(s) | 91, 1138 |
| AcsI | RAATTY | 3 cut(s) | 694, 821, 1360 |
| AcuI | CTGAAG | 3 cut(s) | 1058, 1791, 2395 |
| AfaI | GTAC | 4 cut(s) | 472, 1433, 1462, 1742 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 81, 265, 266, 602 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2245 |
| AhlI | ACTAGT | 1 cut(s) | 1760 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 377, 409, 2358, 2390 |
| Alw21I | GWGCWC | 2 cut(s) | 328, 1869 |
| Alw26I | GTCTC | 4 cut(s) | 508, 1062, 1148, 1195 |
| AlwI | GGATC | 1 cut(s) | 1702 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 47 |
| Ama87I | CYCGRG | 2 cut(s) | 206, 2160 |
| AoxI | GGCC | 4 cut(s) | 91, 148, 972, 1138 |
| ApoI | RAATTY | 3 cut(s) | 694, 821, 1360 |
| AseI | ATTAAT | 1 cut(s) | 1574 |
| AspLEI | GCGC | 3 cut(s) | 1325, 1901, 2140 |
| AspS9I | GGNCC | 1 cut(s) | 972 |
| AsuC2I | CCSGG | 1 cut(s) | 242 |
| AsuHPI | GGTGA | 5 cut(s) | 176, 266, 326, 829, 1993 |
| AvaI | CYCGRG | 2 cut(s) | 206, 2160 |
| BalI | TGGCCA | 2 cut(s) | 93, 1140 |
| BanI | GGYRCC | 1 cut(s) | 1671 |
| BanII | GRGCYC | 2 cut(s) | 272, 1869 |
| Bbv12I | GWGCWC | 2 cut(s) | 328, 1869 |
| BccI | CCATC | 8 cut(s) | 299, 422, 769, 1096, 1149, 1153, 1996, 2012 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 147, 181, 187, 221 |
| BclI | TGATCA | 4 cut(s) | 988, 1026, 1468, 1720 |
| BcnI | CCSGG | 1 cut(s) | 242 |
| BcoDI | GTCTC | 4 cut(s) | 508, 1062, 1148, 1195 |
| BcuI | ACTAGT | 1 cut(s) | 1760 |
| BfmI | CTRYAG | 1 cut(s) | 2182 |
| BglII | AGATCT | 1 cut(s) | 946 |
| BlpI | GCTNAGC | 1 cut(s) | 2141 |
| BmcAI | AGTACT | 1 cut(s) | 1462 |
| Bme1390I | CCNGG | 1 cut(s) | 242 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2245 |
| BmeT110I | CYCGRG | 2 cut(s) | 206, 2160 |
| BmgT120I | GGNCC | 1 cut(s) | 972 |
| BmiI | GGNNCC | 2 cut(s) | 1424, 1673 |
| BmrFI | CCNGG | 1 cut(s) | 242 |
| BmsI | GCATC | 3 cut(s) | 94, 1666, 2371 |
| BoxI | GACNNNNGTC | 1 cut(s) | 856 |
| BpmI | CTGGAG | 1 cut(s) | 1172 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2141 |
| BpuEI | CTTGAG | 3 cut(s) | 312, 935, 1390 |
| BpuMI | CCSGG | 1 cut(s) | 242 |
| Bsa29I | ATCGAT | 2 cut(s) | 427, 2421 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1132 |
| BsaI | GGTCTC | 1 cut(s) | 1062 |
| BsaJI | CCNNGG | 3 cut(s) | 303, 552, 1919 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 81, 265, 266, 602 |
| Bse1I | ACTGG | 3 cut(s) | 638, 975, 1273 |
| Bse3DI | GCAATG | 4 cut(s) | 493, 1069, 1908, 2133 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1132 |
| BseCI | ATCGAT | 2 cut(s) | 427, 2421 |
| BseDI | CCNNGG | 3 cut(s) | 303, 552, 1919 |
| BseGI | GGATG | 4 cut(s) | 679, 1107, 1141, 1171 |
| BseJI | GATNNNNATC | 1 cut(s) | 1132 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 81, 265, 266, 602 |
| BseMI | GCAATG | 4 cut(s) | 493, 1069, 1908, 2133 |
| BseMII | CTCAG | 5 cut(s) | 1190, 1196, 1548, 1741, 2166 |
| BseNI | ACTGG | 3 cut(s) | 638, 975, 1273 |
| BseRI | GAGGAG | 3 cut(s) | 99, 783, 2429 |
| BseYI | CCCAGC | 1 cut(s) | 458 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2421 |
| BshFI | GGCC | 4 cut(s) | 93, 150, 974, 1140 |
| BshNI | GGYRCC | 1 cut(s) | 1671 |
| BshVI | ATCGAT | 2 cut(s) | 427, 2421 |
| BsiEI | CGRYCG | 1 cut(s) | 2421 |
| BsiHKAI | GWGCWC | 2 cut(s) | 328, 1869 |
| BsiHKCI | CYCGRG | 2 cut(s) | 206, 2160 |
| BsiSI | CCGG | 1 cut(s) | 242 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 81, 265, 266, 602 |
| BsmAI | GTCTC | 4 cut(s) | 508, 1062, 1148, 1195 |
| BsmI | GAATGC | 1 cut(s) | 1334 |
| BsnI | GGCC | 4 cut(s) | 93, 150, 974, 1140 |
| Bso31I | GGTCTC | 1 cut(s) | 1062 |
| BsoBI | CYCGRG | 2 cut(s) | 206, 2160 |
| Bsp1286I | GDGCHC | 3 cut(s) | 272, 328, 1869 |
| Bsp1407I | TGTACA | 1 cut(s) | 1740 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2141 |
| Bsp19I | CCATGG | 1 cut(s) | 1919 |
| BspACI | CCGC | 4 cut(s) | 162, 1521, 2237, 2294 |
| BspANI | GGCC | 4 cut(s) | 93, 150, 974, 1140 |
| BspCNI | CTCAG | 5 cut(s) | 1191, 1197, 1549, 1740, 2167 |
| BspDI | ATCGAT | 2 cut(s) | 427, 2421 |
| BspHI | TCATGA | 1 cut(s) | 447 |
| BspLI | GGNNCC | 2 cut(s) | 1424, 1673 |
| BspMAI | CTGCAG | 1 cut(s) | 2186 |
| BspPI | GGATC | 1 cut(s) | 1702 |
| BspT107I | GGYRCC | 1 cut(s) | 1671 |
| BspTNI | GGTCTC | 1 cut(s) | 1062 |
| BsrDI | GCAATG | 4 cut(s) | 493, 1069, 1908, 2133 |
| BsrGI | TGTACA | 1 cut(s) | 1740 |
| BsrI | ACTGG | 3 cut(s) | 638, 975, 1273 |
| BssECI | CCNNGG | 3 cut(s) | 303, 552, 1919 |
| BssT1I | CCWWGG | 3 cut(s) | 303, 552, 1919 |
| Bst4CI | ACNGT | 3 cut(s) | 1159, 1391, 1431 |
| Bst6I | CTCTTC | 3 cut(s) | 847, 1585, 1600 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1383 |
| BstAUI | TGTACA | 1 cut(s) | 1740 |
| BstC8I | GCNNGC | 9 cut(s) | 20, 66, 124, 166, 324, 635, 1951, 2292, 2433 |
| BstDSI | CCRYGG | 1 cut(s) | 1919 |
| BstF5I | GGATG | 4 cut(s) | 679, 1107, 1141, 1171 |
| BstHHI | GCGC | 3 cut(s) | 1325, 1901, 2140 |
| BstMAI | GTCTC | 4 cut(s) | 508, 1062, 1148, 1195 |
| BstMCI | CGRYCG | 1 cut(s) | 2421 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 308, 643, 1329, 1383, 2406 |
| BstNSI | RCATGY | 1 cut(s) | 684 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 856 |
| BstSCI | CCNGG | 1 cut(s) | 240 |
| BstSFI | CTRYAG | 1 cut(s) | 2182 |
| BstX2I | RGATCY | 2 cut(s) | 946, 1694 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 304, 344 |
| BstYI | RGATCY | 2 cut(s) | 946, 1694 |
| Bsu15I | ATCGAT | 2 cut(s) | 427, 2421 |
| BsuRI | GGCC | 4 cut(s) | 93, 150, 974, 1140 |
| BsuTUI | ATCGAT | 2 cut(s) | 427, 2421 |
| BtgI | CCRYGG | 1 cut(s) | 1919 |
| BtsCI | GGATG | 4 cut(s) | 679, 1107, 1141, 1171 |
| BtsIMutI | CAGTG | 3 cut(s) | 645, 1215, 1396 |
| Cac8I | GCNNGC | 9 cut(s) | 20, 66, 124, 166, 324, 635, 1951, 2292, 2433 |
| CaiI | CAGNNNCTG | 1 cut(s) | 47 |
| CciI | TCATGA | 1 cut(s) | 447 |
| CfoI | GCGC | 3 cut(s) | 1325, 1901, 2140 |
| Cfr13I | GGNCC | 1 cut(s) | 972 |
| ClaI | ATCGAT | 2 cut(s) | 427, 2421 |
| CseI | GACGC | 1 cut(s) | 2249 |
| Csp6I | GTAC | 4 cut(s) | 471, 1432, 1461, 1741 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2338, 2373 |
| CviQI | GTAC | 4 cut(s) | 471, 1432, 1461, 1741 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2245 |
| EaeI | YGGCCR | 2 cut(s) | 91, 1138 |
| Eam1104I | CTCTTC | 3 cut(s) | 847, 1585, 1600 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2245 |
| EarI | CTCTTC | 3 cut(s) | 847, 1585, 1600 |
| Ecl136II | GAGCTC | 1 cut(s) | 1867 |
| Eco130I | CCWWGG | 3 cut(s) | 303, 552, 1919 |
| Eco147I | AGGCCT | 1 cut(s) | 150 |
| Eco24I | GRGCYC | 2 cut(s) | 272, 1869 |
| Eco31I | GGTCTC | 1 cut(s) | 1062 |
| Eco32I | GATATC | 1 cut(s) | 1689 |
| Eco53kI | GAGCTC | 1 cut(s) | 1867 |
| Eco57I | CTGAAG | 3 cut(s) | 1058, 1791, 2395 |
| Eco88I | CYCGRG | 2 cut(s) | 206, 2160 |
| EcoICRI | GAGCTC | 1 cut(s) | 1867 |
| EcoRV | GATATC | 1 cut(s) | 1689 |
| EcoT14I | CCWWGG | 3 cut(s) | 303, 552, 1919 |
| EcoT38I | GRGCYC | 2 cut(s) | 272, 1869 |
| ErhI | CCWWGG | 3 cut(s) | 303, 552, 1919 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2358, 2390 |
| FauNDI | CATATG | 1 cut(s) | 1618 |
| FbaI | TGATCA | 4 cut(s) | 988, 1026, 1468, 1720 |
| FblI | GTMKAC | 1 cut(s) | 1247 |
| FokI | GGATG | 4 cut(s) | 686, 1114, 1128, 1158 |
| FriOI | GRGCYC | 2 cut(s) | 272, 1869 |
| FspI | TGCGCA | 1 cut(s) | 1324 |
| GlaI | GCGC | 3 cut(s) | 1324, 1900, 2139 |
| GsaI | CCCAGC | 1 cut(s) | 462 |
| GsuI | CTGGAG | 1 cut(s) | 1172 |
| HaeIII | GGCC | 4 cut(s) | 93, 150, 974, 1140 |
| HapII | CCGG | 1 cut(s) | 242 |
| HgaI | GACGC | 1 cut(s) | 2249 |
| HhaI | GCGC | 3 cut(s) | 1325, 1901, 2140 |
| Hin6I | GCGC | 3 cut(s) | 1323, 1899, 2138 |
| HinP1I | GCGC | 3 cut(s) | 1323, 1899, 2138 |
| HincII | GTYRAC | 1 cut(s) | 580 |
| HindII | GTYRAC | 1 cut(s) | 580 |
| HindIII | AAGCTT | 2 cut(s) | 881, 2407 |
| HinfI | GANTC | 5 cut(s) | 444, 1207, 1394, 2158, 2168 |
| HpaII | CCGG | 1 cut(s) | 242 |
| HphI | GGTGA | 5 cut(s) | 176, 266, 326, 829, 1993 |
| Hpy166II | GTNNAC | 4 cut(s) | 580, 703, 957, 1248 |
| Hpy188I | TCNGA | 7 cut(s) | 827, 1077, 1305, 1473, 1492, 1558, 2463 |
| Hpy8I | GTNNAC | 4 cut(s) | 580, 703, 957, 1248 |
| HpyCH4III | ACNGT | 3 cut(s) | 1159, 1391, 1431 |
| HpyCH4IV | ACGT | 1 cut(s) | 2036 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 308, 643, 1329, 1383, 2406 |
| HpySE526I | ACGT | 1 cut(s) | 2036 |
| HspAI | GCGC | 3 cut(s) | 1323, 1899, 2138 |
| Ksp22I | TGATCA | 4 cut(s) | 988, 1026, 1468, 1720 |
| LmnI | GCTCC | 5 cut(s) | 397, 1033, 1428, 1864, 2287 |
| LweI | GCATC | 3 cut(s) | 94, 1666, 2371 |
| MaeII | ACGT | 1 cut(s) | 2036 |
| MaeIII | GTNAC | 6 cut(s) | 70, 103, 916, 1213, 1480, 2009 |
| MfeI | CAATTG | 3 cut(s) | 351, 600, 2328 |
| MflI | RGATCY | 2 cut(s) | 946, 1694 |
| MhlI | GDGCHC | 3 cut(s) | 272, 328, 1869 |
| MlsI | TGGCCA | 2 cut(s) | 93, 1140 |
| MluNI | TGGCCA | 2 cut(s) | 93, 1140 |
| MlyI | GAGTC | 3 cut(s) | 453, 1216, 2152 |
| MmeI | TCCRAC | 5 cut(s) | 321, 375, 922, 1450, 1632 |
| Mox20I | TGGCCA | 2 cut(s) | 93, 1140 |
| MscI | TGGCCA | 2 cut(s) | 93, 1140 |
| MseI | TTAA | 5 cut(s) | 59, 1574, 2075, 2253, 2319 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1028 |
| Msp20I | TGGCCA | 2 cut(s) | 93, 1140 |
| MspI | CCGG | 1 cut(s) | 242 |
| MspR9I | CCNGG | 1 cut(s) | 242 |
| MunI | CAATTG | 3 cut(s) | 351, 600, 2328 |
| Mva1269I | GAATGC | 1 cut(s) | 1334 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 308, 643, 1329, 1383, 2406 |
| NciI | CCSGG | 1 cut(s) | 242 |
| NcoI | CCATGG | 1 cut(s) | 1919 |
| NdeI | CATATG | 1 cut(s) | 1618 |
| NlaIV | GGNNCC | 2 cut(s) | 1424, 1673 |
| NmuCI | GTSAC | 3 cut(s) | 916, 1213, 1480 |
| NsbI | TGCGCA | 1 cut(s) | 1324 |
| NspI | RCATGY | 1 cut(s) | 684 |
| PaeR7I | CTCGAG | 2 cut(s) | 206, 2160 |
| PagI | TCATGA | 1 cut(s) | 447 |
| PceI | AGGCCT | 1 cut(s) | 150 |
| PctI | GAATGC | 1 cut(s) | 1334 |
| PfeI | GAWTC | 2 cut(s) | 1394, 2168 |
| PflFI | GACNNNGTC | 1 cut(s) | 1206 |
| Ple19I | CGATCG | 1 cut(s) | 2421 |
| PleI | GAGTC | 3 cut(s) | 452, 1215, 2152 |
| PpsI | GAGTC | 3 cut(s) | 452, 1215, 2152 |
| PshAI | GACNNNNGTC | 1 cut(s) | 856 |
| PshBI | ATTAAT | 1 cut(s) | 1574 |
| Psp124BI | GAGCTC | 1 cut(s) | 1869 |
| PspFI | CCCAGC | 1 cut(s) | 458 |
| PspN4I | GGNNCC | 2 cut(s) | 1424, 1673 |
| PspPI | GGNCC | 1 cut(s) | 972 |
| PspXI | VCTCGAGB | 2 cut(s) | 206, 2160 |
| PstI | CTGCAG | 1 cut(s) | 2186 |
| PstNI | CAGNNNCTG | 1 cut(s) | 47 |
| PsuI | RGATCY | 2 cut(s) | 946, 1694 |
| PsyI | GACNNNGTC | 1 cut(s) | 1206 |
| PvuI | CGATCG | 1 cut(s) | 2421 |
| RsaI | GTAC | 4 cut(s) | 472, 1433, 1462, 1742 |
| RsaNI | GTAC | 4 cut(s) | 471, 1432, 1461, 1741 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1028 |
| SacI | GAGCTC | 1 cut(s) | 1869 |
| SaqAI | TTAA | 5 cut(s) | 59, 1574, 2075, 2253, 2319 |
| Sau96I | GGNCC | 1 cut(s) | 972 |
| ScaI | AGTACT | 1 cut(s) | 1462 |
| SchI | GAGTC | 3 cut(s) | 453, 1216, 2152 |
| ScrFI | CCNGG | 1 cut(s) | 242 |
| SduI | GDGCHC | 3 cut(s) | 272, 328, 1869 |
| SfaNI | GCATC | 3 cut(s) | 94, 1666, 2371 |
| SfcI | CTRYAG | 1 cut(s) | 2182 |
| Sfr274I | CTCGAG | 2 cut(s) | 206, 2160 |
| SlaI | CTCGAG | 2 cut(s) | 206, 2160 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1028 |
| SmlI | CTYRAG | 5 cut(s) | 206, 327, 950, 1405, 2160 |
| SmoI | CTYRAG | 5 cut(s) | 206, 327, 950, 1405, 2160 |
| SpeI | ACTAGT | 1 cut(s) | 1760 |
| SseBI | AGGCCT | 1 cut(s) | 150 |
| SsiI | CCGC | 4 cut(s) | 162, 1521, 2237, 2294 |
| SstI | GAGCTC | 1 cut(s) | 1869 |
| StuI | AGGCCT | 1 cut(s) | 150 |
| StyD4I | CCNGG | 1 cut(s) | 240 |
| StyI | CCWWGG | 3 cut(s) | 303, 552, 1919 |
| TaaI | ACNGT | 3 cut(s) | 1159, 1391, 1431 |
| TaiI | ACGT | 1 cut(s) | 2039 |
| TaqI | TCGA | 9 cut(s) | 207, 427, 1357, 2156, 2161, 2171, 2198, 2417, 2421 |
| TatI | WGTACW | 3 cut(s) | 1431, 1460, 1740 |
| TfiI | GAWTC | 2 cut(s) | 1394, 2168 |
| Tru1I | TTAA | 5 cut(s) | 59, 1574, 2075, 2253, 2319 |
| Tru9I | TTAA | 5 cut(s) | 59, 1574, 2075, 2253, 2319 |
| TscAI | CASTG | 3 cut(s) | 645, 1222, 1396 |
| TseFI | GTSAC | 3 cut(s) | 916, 1213, 1480 |
| Tsp45I | GTSAC | 3 cut(s) | 916, 1213, 1480 |
| TspDTI | ATGAA | 4 cut(s) | 1160, 1605, 1770, 2343 |
| TspRI | CASTG | 3 cut(s) | 645, 1222, 1396 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1206 |
| VspI | ATTAAT | 1 cut(s) | 1574 |
| XapI | RAATTY | 3 cut(s) | 694, 821, 1360 |
| XbaI | TCTAGA | 1 cut(s) | 860 |
| XceI | RCATGY | 1 cut(s) | 684 |
| XhoI | CTCGAG | 2 cut(s) | 206, 2160 |
| XmiI | GTMKAC | 1 cut(s) | 1247 |
| ZrmI | AGTACT | 1 cut(s) | 1462 |