Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0004819

Physical Location & Seq

Genomic Coordinates Forward (+)

4475380 .. 4480213

Gene Structure 4834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1040700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2112 bp

ATGGCGACCTACTTTCATCACCACCGCGGCAACTCATCGGAAATCCAAGCCTCCTCCGACAGTGCCTTACAAACACTCGTTCTCATGAATCCCTCTTATGTCCCTTACTCCGACACTCCACCACCACCACAGCAACAACAACAGCCTCAAACCCCACCCGCCGCCACCAACCTTGTTTTTCTCAACTCAGCCGCCAATTCCCTCACTCACCACCCCTCAACTCTCTCCCACGCGCCGCCCTCTCACCACCAGCAATTTGTCGGCATCCCGCTAGCGCAAGACCCCAACAGCAACAGCTCCCAATCCATGCACCACCCCCATCATGACATCTCCACACTGCATGCCTTCATGCCTAGAATTCAGACTCAGTACGCGCTTTGGAACTCAATTGACCCGACCGCGGCCGCGCGTGACACCCCACGCGCTCAGCAGGGCCTGTCTTTGAGTCTCTCCTCTCAGCAGCCGGGTTGGTCGTTCCAGGGGGGCGCCACCGAGAGGGAGGTCCCGTCAGGGGAAGACATTCGGGTTTCCAGCGGGTCAAATTCGTCGGCTTCTGGTGTGACGAATGGGGTTTCGGGTATGCAGAGCGTGCTGCTAAGCTCCAAGTACTTGAAGGCGGCGCAGGAGCTGCTCGATGAGGTTGTGAACGTTGGGAATGGGATGAGGACTGAGCTGCCAAAGAAGGGTAATGGGCAGCAGAGTAAAGCGGCGGCTGAGTCGGCCGCCGGGGACTGTTCAGTAGGCGGTGAAGGGAGTGGAAAGCGTGCGTCTGAGTTGAGCACTGCTGAGAGGCAGGAAATTCAGATGAAGAAGGGAAAGCTAATCAACATGCTTGATGAGGTTGACCAAAGGTACAGGCAATACCACCGACAGATGCAAATGGTAATTTCATCATTCGAGCAAGCAGCTGGAATTGGCTCAGCAAGAACATACACTGCTCTGGCACTGCAAACAATATCAAAGCAATTCAGGTGCCTGAAGGACGCCATAACGAACCAAATTCGATCCGCAAACAAGAGCTTGGGAGAAGAAGATAGCGTTGGAGGCAAGATTGAAGGCTCAAGGCTCAAATATGTTGACCATCAGCTGAGGCAGCAAAGGGCTCTCCAACAATTGGGAATGATCCAGCACAATGCTTGGAGACCACAAAGAGGATTGCCCGAAAGATCTGTTTCCGTTCTTCGCGCTTGGCTCTTCGAACACTTCCTCCACCCATATCCGAAGGATTCAGACAAGCACATGCTTGCAAAACAGACTGGACTTACTAGGAGTCAGGTTTCCAATTGGTTTATAAACGCTCGGGTCCGGCTGTGGAAGCCAATGGTGGAGGAAATGTACATGGAGGAAGTGAAGGAGCAAGAGCAGAATGGATCATCTGAGAAAATGAGCAAGAGCAATGGGGACTCAGCATCAAAGTCCACAGCTCCACAAGACACTGAGAACCAAACAACAAGCACTTTCAACTTCAAACAAGAGAATTCGGTGAATCACAATCTCGCTGCTCATCCATCAATTTCGATTTCCCAAGCCTCAACATCGCCCACAAACATGGTTCGGAACCAGTCCGGATTCACTCTCATTGGGTCATCAGAACTCGATGGGATTACACAAGGTAGTCCAAAGAAGCCTAGGAGCACCGAAATTATGCACTCCTCAAATGGTAGTGTCCCGCGTATGAATATTGAGGCCCAAGAGGTGAACAATGAGCAAGTTTCTATGAAATTCGGGGACGAGAGGCAGGGCAGAGATGGCTACTCTTTCATGGGAGGGCAGACTAATTTCATCGGAAATTTTGGGCAATACCCGATTGGGGAAATTGGCAGGTTTGATGCAGACCAATTCGCACCAAGGTTCTCGGGCAACGGTGTCTCTCTCACTCTAGGTCTTCCTCACTGCGAAAACCTCTCCATGTCCGGAGCTCACCGCCATCAAACTTTTCTCCCAAACCAAAACATTCAGCTGGGGAGAAGAGTAGACACTGGTGAAACAAATGATCAGTTTGGTGCCATAAACACTTCAGCTTCTCACTCTTCCGCTGCTGCATTCGAAAACATCGACATTCAGAACCGAAAGAGGTTCGTAGCCCAATTGTTACCAGACTTTGTGGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009553 GO:0009559 GO:0009561 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009628 GO:0009639 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009987 GO:0010033 GO:0010197 GO:0010201 GO:0010218 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046982 GO:0046983 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

704

Amino Acids

77.17

Weight (kDa)

7.16

Isoelectric Point (pI)

46.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POX	PF07526	197 - 331	8.4e-50	Associated with HOX
Homeobox_KN	PF05920	397 - 436	1.9e-19	Homeobox KN domain
Homeodomain	PF00046	404 - 436	1.2e-06	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35940 AT2G35940 AT2G35940
fragaria_vesca	FvH4_6g20350 FvH4_6g20350 FvH4_6g20350 FvH4_6g20350 FvH4_6g20350 FvH4_6g20350 FvH4_6g20350 FvH4_6g20350 FvH4_6g20350
malus_domestica	MD12G1040700.v1.1 MD14G1039700.v1.1
prunus_persica	Prupe.7G094300_v2.0.a1
pyrus_communis	pycom12g03480 pycom14g03390 pycom14g03400
rosa_chinensis	RchiOBHm_Chr3g0475961
rosa_laevigata	RLG00000023795
rosa_multiflora	Rmu_sc0000585.1_g000030
rosa_roxburghii	Rroxscaffold_6G00405580
rosa_rugosa	Rorug03G0152500 Rorug03G0152600 Rorug03G0152700 Rorug03G0152700
rosa_samantha	Rh3AG203400 Rh3BG233000 Rh3CG228700 Rh3DG228900
rosa_wichuraiana	Rw3G018490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1292
Acc36I	ACCTGC	1 cut(s)	1812
AccB1I	GGYRCC	3 cut(s)	485, 972, 2003
AccB7I	CCANNNNNTGG	1 cut(s)	1114
AccI	GTMKAC	1 cut(s)	1974
AccII	CGCG	9 cut(s)	27, 233, 374, 401, 407, 409, 423, 1185, 1672
AccIII	TCCGGA	2 cut(s)	1565, 1913
AclI	AACGTT	1 cut(s)	648
AclWI	GGATC	3 cut(s)	999, 1117, 1378
AcoI	YGGCCR	2 cut(s)	402, 720
AcsI	RAATTY	7 cut(s)	357, 541, 798, 999, 1477, 1721, 1789
AcuI	CTGAAG	2 cut(s)	998, 2001
AcyI	GRCGYC	2 cut(s)	486, 984
AfaI	GTAC	4 cut(s)	371, 608, 854, 1337
AfiI	CCNNNNNNNGG	7 cut(s)	400, 495, 511, 683, 1114, 1151, 1810
AgsI	TTSAA	4 cut(s)	613, 1055, 1462, 1468
AjnI	CCWGG	1 cut(s)	477
AjuI	GAANNNNNNNTTGG	2 cut(s)	1023, 1055
AloI	GAACNNNNNNTCC	2 cut(s)	1191, 1223
Alw21I	GWGCWC	3 cut(s)	782, 1637, 1921
Alw26I	GTCTC	3 cut(s)	452, 1135, 1873
AlwI	GGATC	3 cut(s)	999, 1117, 1378
AlwNI	CAGNNNCTG	2 cut(s)	436, 628
Ama87I	CYCGRG	2 cut(s)	1299, 1855
Aor13HI	TCCGGA	2 cut(s)	1565, 1913
AoxI	GGCC	4 cut(s)	402, 433, 720, 1686
ApoI	RAATTY	7 cut(s)	357, 541, 798, 999, 1477, 1721, 1789
Asp700I	GAANNNNTTC	1 cut(s)	519
AspA2I	CCTAGG	1 cut(s)	1628
AspLEI	GCGC	8 cut(s)	235, 277, 376, 409, 425, 488, 622, 1187
AspS9I	GGNCC	4 cut(s)	433, 502, 1303, 1687
AsuC2I	CCSGG	2 cut(s)	465, 727
AsuHPI	GGTGA	8 cut(s)	11, 200, 236, 758, 1495, 1708, 1913, 1994
AsuII	TTCGAA	2 cut(s)	1197, 2046
AsuNHI	GCTAGC	1 cut(s)	271
AvaI	CYCGRG	2 cut(s)	1299, 1855
AvaII	GGWCC	2 cut(s)	502, 1303
AvrII	CCTAGG	1 cut(s)	1628
BanI	GGYRCC	3 cut(s)	485, 972, 2003
BanII	GRGCYC	2 cut(s)	1105, 1921
BbsI	GAAGAC	2 cut(s)	522, 1877
Bbv12I	GWGCWC	3 cut(s)	782, 1637, 1921
BbvCI	CCTCAGC	1 cut(s)	1088
BccI	CCATC	6 cut(s)	327, 1089, 1516, 1592, 1742, 1935
BciT130I	CCWGG	1 cut(s)	479
BclI	TGATCA	1 cut(s)	1993
BcnI	CCSGG	2 cut(s)	465, 727
BcoDI	GTCTC	3 cut(s)	452, 1135, 1873
BfaI	CTAG	5 cut(s)	272, 354, 1266, 1629, 1880
BfoI	RGCGCY	1 cut(s)	489
BfuAI	ACCTGC	1 cut(s)	1812
BglII	AGATCT	1 cut(s)	1166
BlnI	CCTAGG	1 cut(s)	1628
BlpI	GCTNAGC	3 cut(s)	426, 596, 919
BmcAI	AGTACT	1 cut(s)	608
Bme1390I	CCNGG	3 cut(s)	465, 479, 727
Bme18I	GGWCC	2 cut(s)	502, 1303
BmeT110I	CYCGRG	2 cut(s)	1299, 1855
BmgT120I	GGNCC	4 cut(s)	433, 502, 1303, 1687
BmiI	GGNNCC	6 cut(s)	487, 504, 974, 1304, 1559, 2005
BmrFI	CCNGG	3 cut(s)	465, 479, 727
BmsI	GCATC	4 cut(s)	273, 864, 1418, 1819
BmtI	GCTAGC	1 cut(s)	275
BpiI	GAAGAC	2 cut(s)	522, 1877
Bpu10I	CCTNAGC	1 cut(s)	1088
Bpu1102I	GCTNAGC	3 cut(s)	426, 596, 919
Bpu14I	TTCGAA	2 cut(s)	1197, 2046
BpuEI	CTTGAG	1 cut(s)	1045
BpuMI	CCSGG	2 cut(s)	465, 727
BsaHI	GRCGYC	2 cut(s)	486, 984
BsaI	GGTCTC	1 cut(s)	1135
BsaJI	CCNNGG	6 cut(s)	25, 399, 478, 726, 1628, 1847
BsaWI	WCCGGW	2 cut(s)	1565, 1913
BsaXI	ACNNNNNCTCC	6 cut(s)	491, 521, 1191, 1221, 1319, 1349
Bsc4I	CCNNNNNNNGG	7 cut(s)	400, 495, 511, 683, 1114, 1151, 1810
Bse1I	ACTGG	3 cut(s)	1261, 1561, 1984
Bse3DI	GCAATG	1 cut(s)	1402
BseAI	TCCGGA	2 cut(s)	1565, 1913
BseBI	CCWGG	1 cut(s)	479
BseDI	CCNNGG	6 cut(s)	25, 399, 478, 726, 1628, 1847
BseGI	GGATG	3 cut(s)	264, 666, 1504
BseLI	CCNNNNNNNGG	7 cut(s)	400, 495, 511, 683, 1114, 1151, 1810
BseMI	GCAATG	1 cut(s)	1402
BseNI	ACTGG	3 cut(s)	1261, 1561, 1984
BseRI	GAGGAG	3 cut(s)	43, 442, 1642
BseX3I	CGGCCG	2 cut(s)	402, 720
BseYI	CCCAGC	1 cut(s)	1960
Bsh1236I	CGCG	9 cut(s)	27, 233, 374, 401, 407, 409, 423, 1185, 1672
Bsh1285I	CGRYCG	3 cut(s)	399, 405, 723
BshFI	GGCC	4 cut(s)	404, 435, 722, 1688
BshNI	GGYRCC	3 cut(s)	485, 972, 2003
BsiEI	CGRYCG	3 cut(s)	399, 405, 723
BsiHKAI	GWGCWC	3 cut(s)	782, 1637, 1921
BsiHKCI	CYCGRG	2 cut(s)	1299, 1855
BsiSI	CCGG	5 cut(s)	464, 726, 1306, 1566, 1914
BslFI	GGGAC	6 cut(s)	86, 488, 743, 1415, 1652, 1742
BslI	CCNNNNNNNGG	7 cut(s)	400, 495, 511, 683, 1114, 1151, 1810
BsmAI	GTCTC	3 cut(s)	452, 1135, 1873
BsmFI	GGGAC	6 cut(s)	86, 488, 743, 1415, 1652, 1742
BsmI	GAATGC	1 cut(s)	2042
BsnI	GGCC	4 cut(s)	404, 435, 722, 1688
Bso31I	GGTCTC	1 cut(s)	1135
BsoBI	CYCGRG	2 cut(s)	1299, 1855
Bsp119I	TTCGAA	2 cut(s)	1197, 2046
Bsp1286I	GDGCHC	4 cut(s)	782, 1105, 1637, 1921
Bsp13I	TCCGGA	2 cut(s)	1565, 1913
Bsp1407I	TGTACA	1 cut(s)	1335
Bsp143I	GATC	5 cut(s)	1004, 1122, 1166, 1370, 1993
Bsp1720I	GCTNAGC	3 cut(s)	426, 596, 919
BspANI	GGCC	4 cut(s)	404, 435, 722, 1688
BspEI	TCCGGA	2 cut(s)	1565, 1913
BspFNI	CGCG	9 cut(s)	27, 233, 374, 401, 407, 409, 423, 1185, 1672
BspHI	TCATGA	2 cut(s)	84, 322
BspLI	GGNNCC	6 cut(s)	487, 504, 974, 1304, 1559, 2005
BspMI	ACCTGC	1 cut(s)	1812
BspOI	GCTAGC	1 cut(s)	275
BspPI	GGATC	3 cut(s)	999, 1117, 1378
BspQI	GCTCTTC	1 cut(s)	1199
BspT104I	TTCGAA	2 cut(s)	1197, 2046
BspT107I	GGYRCC	3 cut(s)	485, 972, 2003
BspTNI	GGTCTC	1 cut(s)	1135
BsrDI	GCAATG	1 cut(s)	1402
BsrGI	TGTACA	1 cut(s)	1335
BsrI	ACTGG	3 cut(s)	1261, 1561, 1984
BssECI	CCNNGG	6 cut(s)	25, 399, 478, 726, 1628, 1847
BssMI	GATC	5 cut(s)	1004, 1122, 1166, 1370, 1993
BssNI	GRCGYC	2 cut(s)	486, 984
BssT1I	CCWWGG	2 cut(s)	1628, 1847
Bst2UI	CCWGG	1 cut(s)	479
Bst4CI	ACNGT	3 cut(s)	62, 734, 1865
Bst6I	CTCTTC	3 cut(s)	1199, 1963, 2035
BstACI	GRCGYC	2 cut(s)	486, 984
BstAPI	GCANNNNNTGC	2 cut(s)	589, 628
BstAUI	TGTACA	1 cut(s)	1335
BstBI	TTCGAA	2 cut(s)	1197, 2046
BstC8I	GCNNGC	6 cut(s)	273, 342, 590, 765, 903, 1245
BstDSI	CCRYGG	2 cut(s)	25, 399
BstF5I	GGATG	3 cut(s)	264, 666, 1504
BstFNI	CGCG	9 cut(s)	27, 233, 374, 401, 407, 409, 423, 1185, 1672
BstH2I	RGCGCY	1 cut(s)	489
BstHHI	GCGC	8 cut(s)	235, 277, 376, 409, 425, 488, 622, 1187
BstKTI	GATC	5 cut(s)	1007, 1125, 1169, 1373, 1996
BstMAI	GTCTC	3 cut(s)	452, 1135, 1873
BstMBI	GATC	5 cut(s)	1004, 1122, 1166, 1370, 1993
BstMCI	CGRYCG	3 cut(s)	399, 405, 723
BstMWI	GCNNNNNNNGC	7 cut(s)	589, 628, 719, 1044, 1093, 1315, 1749
BstNI	CCWGG	1 cut(s)	479
BstNSI	RCATGY	3 cut(s)	344, 832, 1243
BstSCI	CCNGG	3 cut(s)	463, 477, 725
BstUI	CGCG	9 cut(s)	27, 233, 374, 401, 407, 409, 423, 1185, 1672
BstV2I	GAAGAC	2 cut(s)	522, 1877
BstX2I	RGATCY	1 cut(s)	1166
BstXI	CCANNNNNNTGG	1 cut(s)	1549
BstYI	RGATCY	1 cut(s)	1166
BstZI	CGGCCG	2 cut(s)	402, 720
BsuRI	GGCC	4 cut(s)	404, 435, 722, 1688
BtgI	CCRYGG	2 cut(s)	25, 399
BtgZI	GCGATG	1 cut(s)	1521
BtsCI	GGATG	3 cut(s)	264, 666, 1504
BtsI	GCAGTG	5 cut(s)	335, 780, 933, 944, 1891
BtsIMutI	CAGTG	8 cut(s)	67, 335, 780, 933, 944, 1434, 1891, 1977
BveI	ACCTGC	1 cut(s)	1812
Cac8I	GCNNGC	6 cut(s)	273, 342, 590, 765, 903, 1245
CaiI	CAGNNNCTG	2 cut(s)	436, 628
CciI	TCATGA	2 cut(s)	84, 322
CciNI	GCGGCCGC	1 cut(s)	402
CfoI	GCGC	8 cut(s)	235, 277, 376, 409, 425, 488, 622, 1187
Cfr13I	GGNCC	4 cut(s)	433, 502, 1303, 1687
Cfr42I	CCGCGG	2 cut(s)	28, 402
CseI	GACGC	2 cut(s)	756, 992
Csp6I	GTAC	4 cut(s)	370, 607, 853, 1336
CspCI	CAANNNNNGTGG	2 cut(s)	154, 189
CviQI	GTAC	4 cut(s)	370, 607, 853, 1336
DinI	GGCGCC	1 cut(s)	487
DpnI	GATC	5 cut(s)	1006, 1124, 1168, 1372, 1995
DpnII	GATC	5 cut(s)	1004, 1122, 1166, 1370, 1993
EaeI	YGGCCR	2 cut(s)	402, 720
EagI	CGGCCG	2 cut(s)	402, 720
Eam1104I	CTCTTC	3 cut(s)	1199, 1963, 2035
EarI	CTCTTC	3 cut(s)	1199, 1963, 2035
Ecl136II	GAGCTC	1 cut(s)	1919
EclXI	CGGCCG	2 cut(s)	402, 720
Eco130I	CCWWGG	2 cut(s)	1628, 1847
Eco24I	GRGCYC	2 cut(s)	1105, 1921
Eco31I	GGTCTC	1 cut(s)	1135
Eco47I	GGWCC	2 cut(s)	502, 1303
Eco52I	CGGCCG	2 cut(s)	402, 720
Eco53kI	GAGCTC	1 cut(s)	1919
Eco57I	CTGAAG	2 cut(s)	998, 2001
Eco88I	CYCGRG	2 cut(s)	1299, 1855
EcoICRI	GAGCTC	1 cut(s)	1919
EcoO109I	RGGNCCY	2 cut(s)	433, 502
EcoRI	GAATTC	2 cut(s)	357, 1477
EcoRII	CCWGG	1 cut(s)	477
EcoT14I	CCWWGG	2 cut(s)	1628, 1847
EcoT38I	GRGCYC	2 cut(s)	1105, 1921
EgeI	GGCGCC	1 cut(s)	487
EheI	GGCGCC	1 cut(s)	487
ErhI	CCWWGG	2 cut(s)	1628, 1847
FaqI	GGGAC	6 cut(s)	86, 488, 743, 1415, 1652, 1742
FauI	CCCGC	4 cut(s)	166, 276, 527, 1677
FbaI	TGATCA	1 cut(s)	1993
FblI	GTMKAC	1 cut(s)	1974
FokI	GGATG	3 cut(s)	251, 673, 1491
FriOI	GRGCYC	2 cut(s)	1105, 1921
FspBI	CTAG	5 cut(s)	272, 354, 1266, 1629, 1880
GlaI	GCGC	8 cut(s)	234, 276, 375, 408, 424, 487, 621, 1186
GsaI	CCCAGC	1 cut(s)	1964
HaeII	RGCGCY	1 cut(s)	489
HaeIII	GGCC	4 cut(s)	404, 435, 722, 1688
HapII	CCGG	5 cut(s)	464, 726, 1306, 1566, 1914
HgaI	GACGC	2 cut(s)	756, 992
HhaI	GCGC	8 cut(s)	235, 277, 376, 409, 425, 488, 622, 1187
Hin1I	GRCGYC	2 cut(s)	486, 984
Hin6I	GCGC	8 cut(s)	233, 275, 374, 407, 423, 486, 620, 1185
HinP1I	GCGC	8 cut(s)	233, 275, 374, 407, 423, 486, 620, 1185
HincII	GTYRAC	2 cut(s)	844, 1078
HindII	GTYRAC	2 cut(s)	844, 1078
HinfI	GANTC	9 cut(s)	88, 364, 445, 716, 1226, 1270, 1403, 1486, 1569
HpaII	CCGG	5 cut(s)	464, 726, 1306, 1566, 1914
HphI	GGTGA	8 cut(s)	11, 200, 236, 758, 1495, 1708, 1913, 1994
Hpy166II	GTNNAC	6 cut(s)	646, 844, 1078, 1419, 1699, 1975
Hpy188III	TCNNGA	4 cut(s)	85, 323, 1566, 1914
Hpy8I	GTNNAC	6 cut(s)	646, 844, 1078, 1419, 1699, 1975
Hpy99I	CGWCG	1 cut(s)	550
HpyAV	CCTTC	9 cut(s)	355, 607, 676, 743, 805, 973, 1049, 1216, 1345
HpyCH4III	ACNGT	3 cut(s)	62, 734, 1865
HpyCH4IV	ACGT	1 cut(s)	648
HpyCH4V	TGCA	9 cut(s)	310, 340, 583, 877, 949, 1247, 1648, 1832, 2042
HpyF10VI	GCNNNNNNNGC	7 cut(s)	589, 628, 719, 1044, 1093, 1315, 1749
HpySE526I	ACGT	1 cut(s)	648
Hsp92I	GRCGYC	2 cut(s)	486, 984
HspAI	GCGC	8 cut(s)	233, 275, 374, 407, 423, 486, 620, 1185
KasI	GGCGCC	1 cut(s)	485
Kpn2I	TCCGGA	2 cut(s)	1565, 1913
Ksp22I	TGATCA	1 cut(s)	1993
KspI	CCGCGG	2 cut(s)	28, 402
Kzo9I	GATC	5 cut(s)	1004, 1122, 1166, 1370, 1993
LguI	GCTCTTC	1 cut(s)	1199
LmnI	GCTCC	7 cut(s)	302, 605, 625, 1354, 1429, 1632, 1916
LweI	GCATC	4 cut(s)	273, 864, 1418, 1819
MaeI	CTAG	5 cut(s)	272, 354, 1266, 1629, 1880
MaeII	ACGT	1 cut(s)	648
MaeIII	GTNAC	3 cut(s)	410, 559, 2091
MalI	GATC	5 cut(s)	1006, 1124, 1168, 1372, 1995
MboI	GATC	5 cut(s)	1004, 1122, 1166, 1370, 1993
MboII	GAAGA	9 cut(s)	527, 820, 1040, 1043, 1172, 1186, 1877, 1980, 2022
MfeI	CAATTG	4 cut(s)	387, 1112, 1282, 2087
MflI	RGATCY	1 cut(s)	1166
MhlI	GDGCHC	4 cut(s)	782, 1105, 1637, 1921
Mly113I	GGCGCC	1 cut(s)	486
MlyI	GAGTC	5 cut(s)	358, 454, 725, 1279, 1397
MmeI	TCCRAC	4 cut(s)	81, 135, 1021, 1132
MroI	TCCGGA	2 cut(s)	1565, 1913
MroXI	GAANNNNTTC	1 cut(s)	519
MslI	CAYNNNNRTG	1 cut(s)	1547
MspA1I	CMGCKG	7 cut(s)	27, 401, 534, 908, 1087, 1960, 2036
MspI	CCGG	5 cut(s)	464, 726, 1306, 1566, 1914
MspR9I	CCNGG	3 cut(s)	465, 479, 727
MunI	CAATTG	4 cut(s)	387, 1112, 1282, 2087
Mva1269I	GAATGC	1 cut(s)	2042
MvaI	CCWGG	1 cut(s)	479
MvnI	CGCG	9 cut(s)	27, 233, 374, 401, 407, 409, 423, 1185, 1672
MwoI	GCNNNNNNNGC	7 cut(s)	589, 628, 719, 1044, 1093, 1315, 1749
NarI	GGCGCC	1 cut(s)	486
NciI	CCSGG	2 cut(s)	465, 727
NdeII	GATC	5 cut(s)	1004, 1122, 1166, 1370, 1993
NheI	GCTAGC	1 cut(s)	271
NlaIV	GGNNCC	6 cut(s)	487, 504, 974, 1304, 1559, 2005
NmuCI	GTSAC	2 cut(s)	410, 559
NotI	GCGGCCGC	1 cut(s)	402
NspI	RCATGY	3 cut(s)	344, 832, 1243
NspV	TTCGAA	2 cut(s)	1197, 2046
PaeI	GCATGC	1 cut(s)	344
PagI	TCATGA	2 cut(s)	84, 322
PciSI	GCTCTTC	1 cut(s)	1199
PcsI	WCGNNNNNNNCGW	1 cut(s)	2052
PctI	GAATGC	1 cut(s)	2042
PdmI	GAANNNNTTC	1 cut(s)	519
PfeI	GAWTC	4 cut(s)	88, 1226, 1486, 1569
PflMI	CCANNNNNTGG	1 cut(s)	1114
PleI	GAGTC	5 cut(s)	358, 453, 724, 1278, 1397
PluTI	GGCGCC	1 cut(s)	489
PpsI	GAGTC	5 cut(s)	358, 453, 724, 1278, 1397
PpuMI	RGGWCCY	1 cut(s)	502
PsiI	TTATAA	1 cut(s)	1292
Psp124BI	GAGCTC	1 cut(s)	1921
Psp1406I	AACGTT	1 cut(s)	648
Psp5II	RGGWCCY	1 cut(s)	502
Psp6I	CCWGG	1 cut(s)	477
PspFI	CCCAGC	1 cut(s)	1960
PspGI	CCWGG	1 cut(s)	477
PspN4I	GGNNCC	6 cut(s)	487, 504, 974, 1304, 1559, 2005
PspPI	GGNCC	4 cut(s)	433, 502, 1303, 1687
PspPPI	RGGWCCY	1 cut(s)	502
PstNI	CAGNNNCTG	2 cut(s)	436, 628
PsuI	RGATCY	1 cut(s)	1166
PvuII	CAGCTG	3 cut(s)	908, 1087, 1960
RsaI	GTAC	4 cut(s)	371, 608, 854, 1337
RsaNI	GTAC	4 cut(s)	370, 607, 853, 1336
RseI	CAYNNNNRTG	1 cut(s)	1547
SacI	GAGCTC	1 cut(s)	1921
SacII	CCGCGG	2 cut(s)	28, 402
SapI	GCTCTTC	1 cut(s)	1199
Sau3AI	GATC	5 cut(s)	1004, 1122, 1166, 1370, 1993
Sau96I	GGNCC	4 cut(s)	433, 502, 1303, 1687
ScaI	AGTACT	1 cut(s)	608
SchI	GAGTC	5 cut(s)	358, 454, 725, 1279, 1397
ScrFI	CCNGG	3 cut(s)	465, 479, 727
SduI	GDGCHC	4 cut(s)	782, 1105, 1637, 1921
SfaNI	GCATC	4 cut(s)	273, 864, 1418, 1819
SfoI	GGCGCC	1 cut(s)	487
Sfr303I	CCGCGG	2 cut(s)	28, 402
SfuI	TTCGAA	2 cut(s)	1197, 2046
SgrBI	CCGCGG	2 cut(s)	28, 402
SinI	GGWCC	2 cut(s)	502, 1303
SmiMI	CAYNNNNRTG	1 cut(s)	1547
SmlI	CTYRAG	1 cut(s)	1060
SmoI	CTYRAG	1 cut(s)	1060
SphI	GCATGC	1 cut(s)	344
SspDI	GGCGCC	1 cut(s)	485
SspI	AATATT	1 cut(s)	1681
SspMI	CTAG	5 cut(s)	272, 354, 1266, 1629, 1880
SstI	GAGCTC	1 cut(s)	1921
StyD4I	CCNGG	3 cut(s)	463, 477, 725
StyI	CCWWGG	2 cut(s)	1628, 1847
TaaI	ACNGT	3 cut(s)	62, 734, 1865
TaiI	ACGT	1 cut(s)	651
TaqI	TCGA	8 cut(s)	633, 897, 1003, 1197, 1517, 1596, 2046, 2055
TatI	WGTACW	2 cut(s)	606, 1335
TfiI	GAWTC	4 cut(s)	88, 1226, 1486, 1569
TscAI	CASTG	8 cut(s)	67, 342, 787, 940, 951, 1441, 1898, 1984
TseFI	GTSAC	2 cut(s)	410, 559
Tsp45I	GTSAC	2 cut(s)	410, 559
TspDTI	ATGAA	9 cut(s)	5, 101, 337, 821, 879, 1691, 1733, 1750, 1771
TspGWI	ACGGA	1 cut(s)	1165
TspRI	CASTG	8 cut(s)	67, 342, 787, 940, 951, 1441, 1898, 1984
Van91I	CCANNNNNTGG	1 cut(s)	1114
VpaK11BI	GGWCC	2 cut(s)	502, 1303
XapI	RAATTY	7 cut(s)	357, 541, 798, 999, 1477, 1721, 1789
XceI	RCATGY	3 cut(s)	344, 832, 1243
XmaJI	CCTAGG	1 cut(s)	1628
XmiI	GTMKAC	1 cut(s)	1974
XmnI	GAANNNNTTC	1 cut(s)	519
XspI	CTAG	5 cut(s)	272, 354, 1266, 1629, 1880
ZrmI	AGTACT	1 cut(s)	608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.