Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0004819

Physical Location & Seq

Genomic Coordinates Reverse (-)

28035259 .. 28039928

Gene Structure 4670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00405580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1905 bp

ATGAACCACGGCGGTTACGTCCAGTACTCGGATACTACTCAACAGCAACAGTCACCGTCGGCAGCGACTAACCAGCTTGTCTTCCTCAACTCTGCTGGGGCCAATCCACTCGCTCAAGGCTCCACTCTCCCCCACGCGCCGCCCTCCCACACCCAGCAATTTGTCGGCATACCACTCCCGACCGTGTCCTCTCAGGACCCCAGTAACTCGCAGTCCATGCATCCCCACCACGACATGGCTGCTCTCCACGCCTTCATGCCTCGCATTCAGACTCAGTACGCGCTCTGGAACTCAATCGACCCTTCCGCGCGTGAAACGCCACGCGCCCAGCAGGGCCTGTCACTGAGTCTGTCGTCCCAGCAGCCTGGGTTCGGGTCCTTCCGTGGCGCTGACCGGGAAGTGCCGACTGGTGAGGATATTCGGGTTTCGAGCGGGTCCAACTCTTCGGCTTCGGGTGTGACTAATGGGGTTTCGGGTATGCAGAGCGTGTTGCTGAGCTCCAAGTACTTGAAGGCTGCACAGGAGCTTCTTGATGAGGTTGTGAACGTGGGAAATGGGATGAGGTCTGACTTGCCTAAGAAGGGTAATGGGAACCAGAGTAAGGCCATGGCCGAGTCTTCTATGGCGGCCCCCGGAGATGGTTCGATTGGCGGTGATCAAGATAGTGGGAAGCGTGCTGTAGAGCTAAGCACTGCAGAGAGGCAGGAAATTCAGATGAAGAAGGGAAAGCTCATTAGCATGCTTGATGAGGTGCTTGAAAGATGCAATAACAAACCAAATTCGAGCCGCCAACAAGAGCTTAGGCGAAGAGGATTGCAGTGGGGGAAGATTGAAGGTTCAAGGCTCAAATATGTTGACCACCAGCTCAGGCAGCAAAGAGCTCTCCAACAGTTGGGCATGATCCAGCACAATGCTTGGAGACCGCAAAGAGGATTGCCCGAAAGATCTGTTTCTGTTCTTCGCGCTTGGCTTTTCGAACATTTTCTGCACCCCTATCCAAAGGATTCAGACAAGCATATGCTTGCAAAACAAACAGGGCTTACTAGGAGCCAGGTTTCAAATTGGTTTATAAATGCTCGAGTTCGTCTGTGGAAGCCAATGGTGGAAGAAATGTACTTGGAGGAAATCAAGGAGAATGAGCTCAATGGATCATCTGAGAAGATGAGCAAGAGCAATGAGGATTCGGCATCAAAGTCCACACCTCCACAGGAGAGAAGTCCTGCTACTGATCAGAACCAAACCAATAGTACTTTCAATTCCAAACAAGAGACTTCCACAAATCATATTGCTGCTCCTCCATCAATGTCAATGTCAATGTCCTCAGCTTCAACATCTCCCACAAACATTGTTCGGAACCAGTCCGGATTCAGCCTCATCGGGTCATCAGAATTGGATGGCATCACACAAGGTAGTCCAAAGAAGCCAAGGAGCACTGAATTAATGCATTCCCCAAATAGTATGATGAACCATATGGATGTCAAGCCTCAAGAGGTGAGCAATGAGCAAGTTTCTATGAAATTTGGGGATGAGAGGCAGAGCAGAGATGGCTACTCATTCATGGGAGGACAGACCAATTTTATTGGGAATTTCGGGCAATACCCAATTGGTGAAATTGGGAGGTTCGATGCAGACCAATTCACACCACGGTTCTCAGGCAATGGTGTCTCTCTCACTCTTGGTCTTCCTCATTGTGAAAACCTCTCCTTGTCTGGTGCCCATCACCAAACTTTTCTCCCAAACCAAAACATTCAATTGGGGAGAAGAGTTGATCACATTGGAGAACCAAATGATCAGTTTGGTACCATGAACACTTCAGCTCCTCACTCTTCTGCCGGATTCGAAAGCATCGACATTCAGAATCGAAAGAGGTTCGTAGCACAATTGTTGCCAGACTTTGTGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009553 GO:0009559 GO:0009561 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009628 GO:0009639 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009987 GO:0010033 GO:0010197 GO:0010201 GO:0010218 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046982 GO:0046983 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

634

Amino Acids

69.66

Weight (kDa)

7.37

Isoelectric Point (pI)

53.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POX	PF07526	163 - 256	5.7e-19	Associated with HOX
Homeobox_KN	PF05920	323 - 362	1.7e-19	Homeobox KN domain
Homeodomain	PF00046	330 - 362	1e-06	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35940 AT2G35940 AT2G35940
fragaria_vesca	FvH4_6g20350 FvH4_6g20350 FvH4_6g20350 FvH4_6g20350 FvH4_6g20350 FvH4_6g20350 FvH4_6g20350 FvH4_6g20350 FvH4_6g20350
malus_domestica	MD12G1040700.v1.1 MD14G1039700.v1.1
prunus_persica	Prupe.7G094300_v2.0.a1
pyrus_communis	pycom12g03480 pycom14g03390 pycom14g03400
rosa_chinensis	RchiOBHm_Chr3g0475961
rosa_laevigata	RLG00000023795
rosa_multiflora	Rmu_sc0000585.1_g000030
rosa_roxburghii	Rroxscaffold_6G00405580
rosa_rugosa	Rorug03G0152500 Rorug03G0152600 Rorug03G0152700 Rorug03G0152700
rosa_samantha	Rh3AG203400 Rh3BG233000 Rh3CG228700 Rh3DG228900
rosa_wichuraiana	Rw3G018490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1070
Acc65I	GGTACC	1 cut(s)	1799
AccB1I	GGYRCC	2 cut(s)	1712, 1799
AccB7I	CCANNNNNTGG	2 cut(s)	235, 892
AccBSI	CCGCTC	1 cut(s)	432
AccII	CGCG	6 cut(s)	137, 281, 308, 310, 324, 963
AccIII	TCCGGA	1 cut(s)	1361
AciI	CCGC	8 cut(s)	12, 140, 306, 432, 626, 651, 787, 923
AclWI	GGATC	2 cut(s)	895, 1156
AcoI	YGGCCR	1 cut(s)	609
AcsI	RAATTY	4 cut(s)	708, 778, 1517, 1585
AcuI	CTGAAG	1 cut(s)	1797
AfaI	GTAC	6 cut(s)	26, 278, 506, 1115, 1249, 1801
AfiI	CCNNNNNNNGG	8 cut(s)	28, 235, 371, 581, 601, 638, 892, 929
AgsI	TTSAA	8 cut(s)	511, 758, 833, 840, 1059, 1255, 1329, 1751
AjnI	CCWGG	2 cut(s)	364, 1050
AjuI	GAANNNNNNNTTGG	2 cut(s)	1235, 1267
Alw21I	GWGCWC	4 cut(s)	500, 883, 1143, 1433
Alw26I	GTCTC	3 cut(s)	913, 1262, 1669
AlwI	GGATC	2 cut(s)	895, 1156
AlwNI	CAGNNNCTG	1 cut(s)	337
Ama87I	CYCGRG	1 cut(s)	1077
Aor13HI	TCCGGA	1 cut(s)	1361
AoxI	GGCC	6 cut(s)	99, 334, 603, 609, 627, 1899
ApeKI	GCWGC	6 cut(s)	62, 239, 361, 515, 871, 1289
ApoI	RAATTY	4 cut(s)	708, 778, 1517, 1585
AseI	ATTAAT	1 cut(s)	1439
Asp700I	GAANNNNTTC	1 cut(s)	981
Asp718I	GGTACC	1 cut(s)	1799
AspLEI	GCGC	6 cut(s)	139, 283, 310, 326, 389, 965
AspS9I	GGNCC	6 cut(s)	99, 196, 334, 375, 435, 628
AsuC2I	CCSGG	2 cut(s)	395, 633
AsuHPI	GGTGA	6 cut(s)	45, 422, 665, 1504, 1619, 1712
AsuII	TTCGAA	2 cut(s)	975, 1839
AvaI	CYCGRG	1 cut(s)	1077
AvaII	GGWCC	3 cut(s)	196, 375, 435
BaeGI	GKGCMC	1 cut(s)	1717
BanI	GGYRCC	2 cut(s)	1712, 1799
BanII	GRGCYC	3 cut(s)	500, 883, 1143
BarI	GAAGNNNNNNTAC	2 cut(s)	1207, 1239
BbsI	GAAGAC	3 cut(s)	73, 609, 1673
Bbv12I	GWGCWC	4 cut(s)	500, 883, 1143, 1433
BbvCI	CCTCAGC	1 cut(s)	1321
BbvI	GCAGC	6 cut(s)	74, 226, 373, 502, 883, 1276
BccI	CCATC	5 cut(s)	632, 1306, 1388, 1538, 1725
BceAI	ACGGC	1 cut(s)	25
BcgI	CGANNNNNNTGC	2 cut(s)	221, 255
BciT130I	CCWGG	2 cut(s)	366, 1052
BciVI	GTATCC	1 cut(s)	25
BclI	TGATCA	4 cut(s)	655, 1228, 1768, 1789
BcnI	CCSGG	2 cut(s)	395, 633
BcoDI	GTCTC	3 cut(s)	913, 1262, 1669
BfaI	CTAG	1 cut(s)	1044
BfmI	CTRYAG	2 cut(s)	678, 693
BfoI	RGCGCY	1 cut(s)	390
BfuI	GTATCC	1 cut(s)	25
BglII	AGATCT	1 cut(s)	944
BisI	GCNGC	9 cut(s)	63, 140, 240, 362, 516, 627, 787, 872, 1290
BlpI	GCTNAGC	2 cut(s)	494, 686
BlsI	GCNGC	9 cut(s)	64, 141, 241, 363, 517, 628, 788, 873, 1291
BmcAI	AGTACT	3 cut(s)	26, 506, 1249
Bme1390I	CCNGG	4 cut(s)	366, 395, 633, 1052
Bme18I	GGWCC	3 cut(s)	196, 375, 435
BmeT110I	CYCGRG	1 cut(s)	1077
BmgT120I	GGNCC	6 cut(s)	99, 196, 334, 375, 435, 628
BmrFI	CCNGG	4 cut(s)	366, 395, 633, 1052
BmrI	ACTGGG	1 cut(s)	195
BmsI	GCATC	6 cut(s)	229, 752, 1196, 1407, 1615, 1854
BmuI	ACTGGG	1 cut(s)	195
BpiI	GAAGAC	3 cut(s)	73, 609, 1673
Bpu10I	CCTNAGC	3 cut(s)	800, 866, 1321
Bpu1102I	GCTNAGC	2 cut(s)	494, 686
Bpu14I	TTCGAA	2 cut(s)	975, 1839
BpuEI	CTTGAG	2 cut(s)	99, 1470
BpuMI	CCSGG	2 cut(s)	395, 633
BsaI	GGTCTC	1 cut(s)	913
BsaJI	CCNNGG	7 cut(s)	7, 365, 382, 606, 631, 1424, 1643
BsaWI	WCCGGW	1 cut(s)	1361
BsaXI	ACNNNNNCTCC	2 cut(s)	1801, 1831
Bsc4I	CCNNNNNNNGG	8 cut(s)	28, 235, 371, 581, 601, 638, 892, 929
Bse1I	ACTGG	4 cut(s)	22, 201, 412, 1357
Bse3DI	GCAATG	3 cut(s)	1180, 1504, 1663
BseAI	TCCGGA	1 cut(s)	1361
BseBI	CCWGG	2 cut(s)	366, 1052
BseDI	CCNNGG	7 cut(s)	7, 365, 382, 606, 631, 1424, 1643
BseGI	GGATG	5 cut(s)	220, 564, 1399, 1480, 1531
BseLI	CCNNNNNNNGG	8 cut(s)	28, 235, 371, 581, 601, 638, 892, 929
BseMI	GCAATG	3 cut(s)	1180, 1504, 1663
BseMII	CTCAG	8 cut(s)	206, 287, 335, 485, 880, 1146, 1335, 1665
BseNI	ACTGG	4 cut(s)	22, 201, 412, 1357
BseRI	GAGGAG	2 cut(s)	1284, 1809
BseSI	GKGCMC	1 cut(s)	1717
BseXI	GCAGC	6 cut(s)	74, 226, 373, 502, 883, 1276
BseYI	CCCAGC	4 cut(s)	95, 153, 327, 357
BsgI	GTGCAG	2 cut(s)	501, 971
Bsh1236I	CGCG	6 cut(s)	137, 281, 308, 310, 324, 963
Bsh1285I	CGRYCG	1 cut(s)	183
BshFI	GGCC	6 cut(s)	101, 336, 605, 611, 629, 1901
BshNI	GGYRCC	2 cut(s)	1712, 1799
BsiEI	CGRYCG	1 cut(s)	183
BsiHKAI	GWGCWC	4 cut(s)	500, 883, 1143, 1433
BsiHKCI	CYCGRG	1 cut(s)	1077
BsiSI	CCGG	4 cut(s)	394, 633, 1362, 1833
BslFI	GGGAC	1 cut(s)	340
BslI	CCNNNNNNNGG	8 cut(s)	28, 235, 371, 581, 601, 638, 892, 929
BsmAI	GTCTC	3 cut(s)	913, 1262, 1669
BsmFI	GGGAC	1 cut(s)	340
BsmI	GAATGC	2 cut(s)	264, 1444
BsnI	GGCC	6 cut(s)	101, 336, 605, 611, 629, 1901
Bso31I	GGTCTC	1 cut(s)	913
BsoBI	CYCGRG	1 cut(s)	1077
Bsp119I	TTCGAA	2 cut(s)	975, 1839
Bsp1286I	GDGCHC	5 cut(s)	500, 883, 1143, 1433, 1717
Bsp13I	TCCGGA	1 cut(s)	1361
Bsp143I	GATC	7 cut(s)	655, 900, 944, 1148, 1228, 1768, 1789
Bsp1720I	GCTNAGC	2 cut(s)	494, 686
Bsp19I	CCATGG	1 cut(s)	606
BspACI	CCGC	8 cut(s)	12, 140, 306, 432, 626, 651, 787, 923
BspANI	GGCC	6 cut(s)	101, 336, 605, 611, 629, 1901
BspCNI	CTCAG	8 cut(s)	205, 286, 336, 486, 879, 1147, 1334, 1664
BspEI	TCCGGA	1 cut(s)	1361
BspFNI	CGCG	6 cut(s)	137, 281, 308, 310, 324, 963
BspMAI	CTGCAG	1 cut(s)	697
BspPI	GGATC	2 cut(s)	895, 1156
BspT104I	TTCGAA	2 cut(s)	975, 1839
BspT107I	GGYRCC	2 cut(s)	1712, 1799
BspTNI	GGTCTC	1 cut(s)	913
BsrBI	CCGCTC	1 cut(s)	432
BsrDI	GCAATG	3 cut(s)	1180, 1504, 1663
BsrI	ACTGG	4 cut(s)	22, 201, 412, 1357
BssECI	CCNNGG	7 cut(s)	7, 365, 382, 606, 631, 1424, 1643
BssMI	GATC	7 cut(s)	655, 900, 944, 1148, 1228, 1768, 1789
BssT1I	CCWWGG	2 cut(s)	606, 1424
Bst2UI	CCWGG	2 cut(s)	366, 1052
Bst4CI	ACNGT	5 cut(s)	51, 57, 184, 891, 1647
Bst6I	CTCTTC	4 cut(s)	448, 802, 1756, 1831
BstAPI	GCANNNNNTGC	1 cut(s)	217
BstBI	TTCGAA	2 cut(s)	975, 1839
BstC8I	GCNNGC	3 cut(s)	675, 740, 1023
BstDSI	CCRYGG	4 cut(s)	7, 382, 606, 1643
BstF5I	GGATG	5 cut(s)	220, 564, 1399, 1480, 1531
BstFNI	CGCG	6 cut(s)	137, 281, 308, 310, 324, 963
BstH2I	RGCGCY	1 cut(s)	390
BstHHI	GCGC	6 cut(s)	139, 283, 310, 326, 389, 965
BstKTI	GATC	7 cut(s)	658, 903, 947, 1151, 1231, 1771, 1792
BstMAI	GTCTC	3 cut(s)	913, 1262, 1669
BstMBI	GATC	7 cut(s)	655, 900, 944, 1148, 1228, 1768, 1789
BstMCI	CGRYCG	1 cut(s)	183
BstMWI	GCNNNNNNNGC	5 cut(s)	217, 248, 316, 871, 1545
BstNI	CCWGG	2 cut(s)	366, 1052
BstNSI	RCATGY	1 cut(s)	742
BstSCI	CCNGG	4 cut(s)	364, 393, 631, 1050
BstSFI	CTRYAG	2 cut(s)	678, 693
BstSLI	GKGCMC	1 cut(s)	1717
BstUI	CGCG	6 cut(s)	137, 281, 308, 310, 324, 963
BstV1I	GCAGC	6 cut(s)	74, 226, 373, 502, 883, 1276
BstV2I	GAAGAC	3 cut(s)	73, 609, 1673
BstX2I	RGATCY	1 cut(s)	944
BstXI	CCANNNNNNTGG	1 cut(s)	365
BstYI	RGATCY	1 cut(s)	944
BsuI	GTATCC	1 cut(s)	25
BsuRI	GGCC	6 cut(s)	101, 336, 605, 611, 629, 1901
BtgI	CCRYGG	4 cut(s)	7, 382, 606, 1643
BtsCI	GGATG	5 cut(s)	220, 564, 1399, 1480, 1531
BtsI	GCAGTG	2 cut(s)	690, 824
BtsIMutI	CAGTG	4 cut(s)	341, 690, 824, 1431
Cac8I	GCNNGC	3 cut(s)	675, 740, 1023
CaiI	CAGNNNCTG	1 cut(s)	337
CfoI	GCGC	6 cut(s)	139, 283, 310, 326, 389, 965
Cfr13I	GGNCC	6 cut(s)	99, 196, 334, 375, 435, 628
Csp6I	GTAC	6 cut(s)	25, 277, 505, 1114, 1248, 1800
CspCI	CAANNNNNGTGG	2 cut(s)	1327, 1362
CviAII	CATG	8 cut(s)	217, 235, 256, 607, 739, 898, 1558, 1804
CviQI	GTAC	6 cut(s)	25, 277, 505, 1114, 1248, 1800
DpnI	GATC	7 cut(s)	657, 902, 946, 1150, 1230, 1770, 1791
DpnII	GATC	7 cut(s)	655, 900, 944, 1148, 1228, 1768, 1789
EaeI	YGGCCR	1 cut(s)	609
Eam1104I	CTCTTC	4 cut(s)	448, 802, 1756, 1831
EarI	CTCTTC	4 cut(s)	448, 802, 1756, 1831
Ecl136II	GAGCTC	3 cut(s)	498, 881, 1141
Eco130I	CCWWGG	2 cut(s)	606, 1424
Eco24I	GRGCYC	3 cut(s)	500, 883, 1143
Eco31I	GGTCTC	1 cut(s)	913
Eco47I	GGWCC	3 cut(s)	196, 375, 435
Eco53kI	GAGCTC	3 cut(s)	498, 881, 1141
Eco57I	CTGAAG	1 cut(s)	1797
Eco88I	CYCGRG	1 cut(s)	1077
EcoICRI	GAGCTC	3 cut(s)	498, 881, 1141
EcoO109I	RGGNCCY	3 cut(s)	196, 334, 375
EcoRII	CCWGG	2 cut(s)	364, 1050
EcoT14I	CCWWGG	2 cut(s)	606, 1424
EcoT22I	ATGCAT	2 cut(s)	222, 1446
EcoT38I	GRGCYC	3 cut(s)	500, 883, 1143
ErhI	CCWWGG	2 cut(s)	606, 1424
FaeI	CATG	8 cut(s)	220, 238, 259, 610, 742, 901, 1561, 1807
FaqI	GGGAC	1 cut(s)	340
FatI	CATG	8 cut(s)	216, 234, 255, 606, 738, 897, 1557, 1803
FauI	CCCGC	1 cut(s)	425
FauNDI	CATATG	2 cut(s)	1017, 1470
FbaI	TGATCA	4 cut(s)	655, 1228, 1768, 1789
Fnu4HI	GCNGC	9 cut(s)	63, 140, 240, 362, 516, 627, 787, 872, 1290
FokI	GGATG	5 cut(s)	207, 571, 1406, 1487, 1538
FriOI	GRGCYC	3 cut(s)	500, 883, 1143
Fsp4HI	GCNGC	9 cut(s)	63, 140, 240, 362, 516, 627, 787, 872, 1290
FspBI	CTAG	1 cut(s)	1044
GlaI	GCGC	6 cut(s)	138, 282, 309, 325, 388, 964
GluI	GCNGC	9 cut(s)	63, 140, 240, 362, 516, 627, 787, 872, 1290
GsaI	CCCAGC	4 cut(s)	99, 157, 331, 361
HaeII	RGCGCY	1 cut(s)	390
HaeIII	GGCC	6 cut(s)	101, 336, 605, 611, 629, 1901
HapII	CCGG	4 cut(s)	394, 633, 1362, 1833
HhaI	GCGC	6 cut(s)	139, 283, 310, 326, 389, 965
Hin1II	CATG	8 cut(s)	220, 238, 259, 610, 742, 901, 1561, 1807
Hin6I	GCGC	6 cut(s)	137, 281, 308, 324, 387, 963
HinP1I	GCGC	6 cut(s)	137, 281, 308, 324, 387, 963
HincII	GTYRAC	1 cut(s)	856
HindII	GTYRAC	1 cut(s)	856
HinfI	GANTC	8 cut(s)	271, 346, 614, 1004, 1181, 1365, 1836, 1858
HpaII	CCGG	4 cut(s)	394, 633, 1362, 1833
HphI	GGTGA	6 cut(s)	45, 422, 665, 1504, 1619, 1712
Hpy166II	GTNNAC	3 cut(s)	544, 856, 1197
Hpy188III	TCNNGA	7 cut(s)	178, 194, 286, 530, 659, 1362, 1487
Hpy8I	GTNNAC	3 cut(s)	544, 856, 1197
Hpy99I	CGWCG	1 cut(s)	61
HpyAV	CCTTC	7 cut(s)	262, 312, 388, 505, 574, 715, 827
HpyCH4III	ACNGT	5 cut(s)	51, 57, 184, 891, 1647
HpyCH4IV	ACGT	2 cut(s)	18, 546
HpyF10VI	GCNNNNNNNGC	5 cut(s)	217, 248, 316, 871, 1545
HpySE526I	ACGT	2 cut(s)	18, 546
Hsp92II	CATG	8 cut(s)	220, 238, 259, 610, 742, 901, 1561, 1807
HspAI	GCGC	6 cut(s)	137, 281, 308, 324, 387, 963
Kpn2I	TCCGGA	1 cut(s)	1361
KpnI	GGTACC	1 cut(s)	1803
Ksp22I	TGATCA	4 cut(s)	655, 1228, 1768, 1789
Kzo9I	GATC	7 cut(s)	655, 900, 944, 1148, 1228, 1768, 1789
LmnI	GCTCC	7 cut(s)	125, 503, 523, 1047, 1297, 1428, 1822
Lsp1109I	GCAGC	6 cut(s)	74, 226, 373, 502, 883, 1276
LweI	GCATC	6 cut(s)	229, 752, 1196, 1407, 1615, 1854
MaeI	CTAG	1 cut(s)	1044
MaeII	ACGT	2 cut(s)	18, 546
MaeIII	GTNAC	5 cut(s)	14, 51, 203, 339, 457
MalI	GATC	7 cut(s)	657, 902, 946, 1150, 1230, 1770, 1791
MbiI	CCGCTC	1 cut(s)	432
MboI	GATC	7 cut(s)	655, 900, 944, 1148, 1228, 1768, 1789
MfeI	CAATTG	3 cut(s)	1602, 1751, 1880
MflI	RGATCY	1 cut(s)	944
MhlI	GDGCHC	5 cut(s)	500, 883, 1143, 1433, 1717
MlyI	GAGTC	3 cut(s)	265, 355, 623
MmeI	TCCRAC	2 cut(s)	462, 910
Mph1103I	ATGCAT	2 cut(s)	222, 1446
MroI	TCCGGA	1 cut(s)	1361
MroXI	GAANNNNTTC	1 cut(s)	981
MseI	TTAA	1 cut(s)	1439
MslI	CAYNNNNRTG	2 cut(s)	737, 1473
MspI	CCGG	4 cut(s)	394, 633, 1362, 1833
MspR9I	CCNGG	4 cut(s)	366, 395, 633, 1052
MunI	CAATTG	3 cut(s)	1602, 1751, 1880
Mva1269I	GAATGC	2 cut(s)	264, 1444
MvaI	CCWGG	2 cut(s)	366, 1052
MvnI	CGCG	6 cut(s)	137, 281, 308, 310, 324, 963
MwoI	GCNNNNNNNGC	5 cut(s)	217, 248, 316, 871, 1545
NciI	CCSGG	2 cut(s)	395, 633
NcoI	CCATGG	1 cut(s)	606
NdeI	CATATG	2 cut(s)	1017, 1470
NdeII	GATC	7 cut(s)	655, 900, 944, 1148, 1228, 1768, 1789
NlaIII	CATG	8 cut(s)	220, 238, 259, 610, 742, 901, 1561, 1807
NmeAIII	GCCGAG	1 cut(s)	637
NmuCI	GTSAC	3 cut(s)	51, 339, 457
NsiI	ATGCAT	2 cut(s)	222, 1446
NspI	RCATGY	1 cut(s)	742
NspV	TTCGAA	2 cut(s)	975, 1839
PaeI	GCATGC	1 cut(s)	742
PaeR7I	CTCGAG	1 cut(s)	1077
PcsI	WCGNNNNNNNCGW	2 cut(s)	15, 1845
PctI	GAATGC	2 cut(s)	264, 1444
PdmI	GAANNNNTTC	1 cut(s)	981
PfeI	GAWTC	5 cut(s)	1004, 1181, 1365, 1836, 1858
PflFI	GACNNNGTC	1 cut(s)	184
PflMI	CCANNNNNTGG	2 cut(s)	235, 892
PkrI	GCNGC	9 cut(s)	64, 141, 241, 363, 517, 628, 788, 873, 1291
PleI	GAGTC	3 cut(s)	265, 354, 622
PpsI	GAGTC	3 cut(s)	265, 354, 622
PpuMI	RGGWCCY	2 cut(s)	196, 375
PshBI	ATTAAT	1 cut(s)	1439
PsiI	TTATAA	1 cut(s)	1070
Psp124BI	GAGCTC	3 cut(s)	500, 883, 1143
Psp5II	RGGWCCY	2 cut(s)	196, 375
Psp6I	CCWGG	2 cut(s)	364, 1050
PspFI	CCCAGC	4 cut(s)	95, 153, 327, 357
PspGI	CCWGG	2 cut(s)	364, 1050
PspPI	GGNCC	6 cut(s)	99, 196, 334, 375, 435, 628
PspPPI	RGGWCCY	2 cut(s)	196, 375
PspXI	VCTCGAGB	1 cut(s)	1077
PstI	CTGCAG	1 cut(s)	697
PstNI	CAGNNNCTG	1 cut(s)	337
PsuI	RGATCY	1 cut(s)	944
PsyI	GACNNNGTC	1 cut(s)	184
RsaI	GTAC	6 cut(s)	26, 278, 506, 1115, 1249, 1801
RsaNI	GTAC	6 cut(s)	25, 277, 505, 1114, 1248, 1800
RseI	CAYNNNNRTG	2 cut(s)	737, 1473
SacI	GAGCTC	3 cut(s)	500, 883, 1143
SaqAI	TTAA	1 cut(s)	1439
SatI	GCNGC	9 cut(s)	63, 140, 240, 362, 516, 627, 787, 872, 1290
Sau3AI	GATC	7 cut(s)	655, 900, 944, 1148, 1228, 1768, 1789
Sau96I	GGNCC	6 cut(s)	99, 196, 334, 375, 435, 628
ScaI	AGTACT	3 cut(s)	26, 506, 1249
SchI	GAGTC	3 cut(s)	265, 355, 623
ScrFI	CCNGG	4 cut(s)	366, 395, 633, 1052
SduI	GDGCHC	5 cut(s)	500, 883, 1143, 1433, 1717
SfaNI	GCATC	6 cut(s)	229, 752, 1196, 1407, 1615, 1854
SfcI	CTRYAG	2 cut(s)	678, 693
Sfr274I	CTCGAG	1 cut(s)	1077
SfuI	TTCGAA	2 cut(s)	975, 1839
SinI	GGWCC	3 cut(s)	196, 375, 435
SlaI	CTCGAG	1 cut(s)	1077
SmiMI	CAYNNNNRTG	2 cut(s)	737, 1473
SmlI	CTYRAG	3 cut(s)	114, 1077, 1485
SmoI	CTYRAG	3 cut(s)	114, 1077, 1485
SphI	GCATGC	1 cut(s)	742
SsiI	CCGC	8 cut(s)	12, 140, 306, 432, 626, 651, 787, 923
SspMI	CTAG	1 cut(s)	1044
SstI	GAGCTC	3 cut(s)	500, 883, 1143
StyD4I	CCNGG	4 cut(s)	364, 393, 631, 1050
StyI	CCWWGG	2 cut(s)	606, 1424
TaaI	ACNGT	5 cut(s)	51, 57, 184, 891, 1647
TaiI	ACGT	2 cut(s)	21, 549
TatI	WGTACW	4 cut(s)	24, 504, 1113, 1247
TauI	GCSGC	3 cut(s)	142, 629, 789
TfiI	GAWTC	5 cut(s)	1004, 1181, 1365, 1836, 1858
Tru1I	TTAA	1 cut(s)	1439
Tru9I	TTAA	1 cut(s)	1439
TscAI	CASTG	4 cut(s)	348, 697, 824, 1438
TseFI	GTSAC	3 cut(s)	51, 339, 457
TseI	GCWGC	6 cut(s)	62, 239, 361, 515, 871, 1289
Tsp45I	GTSAC	3 cut(s)	51, 339, 457
TspDTI	ATGAA	7 cut(s)	17, 244, 731, 1478, 1529, 1546, 1820
TspGWI	ACGGA	1 cut(s)	371
TspRI	CASTG	4 cut(s)	348, 697, 824, 1438
Tth111I	GACNNNGTC	1 cut(s)	184
Van91I	CCANNNNNTGG	2 cut(s)	235, 892
VpaK11BI	GGWCC	3 cut(s)	196, 375, 435
VspI	ATTAAT	1 cut(s)	1439
XapI	RAATTY	4 cut(s)	708, 778, 1517, 1585
XceI	RCATGY	1 cut(s)	742
XhoI	CTCGAG	1 cut(s)	1077
XmnI	GAANNNNTTC	1 cut(s)	981
XspI	CTAG	1 cut(s)	1044
ZrmI	AGTACT	3 cut(s)	26, 506, 1249
Zsp2I	ATGCAT	2 cut(s)	222, 1446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.