Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004819

Physical Location & Seq

Genomic Coordinates Forward (+)

12501834 .. 12509038

Gene Structure 7205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0152500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2517 bp

ATGTTGTTGTCCTTCTTGAGTAAGCGCTCGTTGGAGGCTGATTCCAGGGACGCCTATGGGTTTGCTTTGAGACCTCAATATGTACAAACATATAAAGAATACGCTCATATCTACAAGGAGGAGGAAGATGAACGATCAGATAAATGGAAGAACTTCCTTGAACATATAGAAAAATCTTCTCAGTCGTGCTCTCTTGAAAAGGCACATACAGAGGAATTGCCAGCTGAAGCTACAGAGCAGAAGGCATATAGAGAGGAACTTCAAGCTGAACCTACTGAGCAGAAAGCAGAGATAGTTTCTGAGAGCGATGAGGAAGGGAATGACAAAAGTAGTCTGAAATCTATTTCTGAAGATTCATCAGAAAGAGATCCCAAAAAGGAGGCTCAACTTCCAAAAGAAACAGGAAAAAGTAAGGTCCAAACATGGACCTTCATTAGGTCATCCCTTAGTTCCATTGAAAATATGATGAGCATTCGTGTTAGGAAACAAAAGAATATGAAAGATGAGCATATAGTTGTGGATAAAGACCATCTTCCATCAATAGAAGAAGTTCCTTCACAAGATGCTTTTGAGGATGGTCAAGAGGAAGACATTTATCTTGATGCCTCCAATGGAGCAACTTCTGTAAGTAACAGGGAATCTGATGGATTGAAAGCTTCTGGGGAAGATGAGGTTGTGGATGGTGGTGTCTGTAACAGTGTGCAAGCTGATCAGACAAAAGAGGATGTGGCTAATGGGATCCATCCAGAACCTCTCTTTCCTTGGAGCCAGGAACTGGAGTCCCTTGTTCATGGAGGAGTTCCAAGAGATCTCAGGGGAGAGGTATGGCAAGCTTTTGTAGGTGTGAAGGCTCGTCGGGTGGAGAAATATTATTATGACCTCCTGGCTGAAGAAACAAATACTGGCGAAAGCATGGATAATGATAATTCATGTGGTGCTTTCAGAAAATGGAGAAAGCAGATTGAGAAGGACATACCACGTACCTTTCCAGGACATCCTGCATTAGATGAGAATGGTCGGAATTCGTTGAGGCGTTTGCTTTTGGCTTATGCTCGTCATAACCCCTCTGTTGGGTACTGCCAGGCAATGAATTTCTTTGCAGGGTTATTGCTACTTCTGATGCCTGAGGAAAATGCTTTTTGGACTTTGGTGGGTATCATCGACGACTATTTTGATGGCTACTATACTGAAGAAATGATAGAATCTCAGGTGGACCAGCTTGTTTTTGAGGAACTAGTGCGAGAAAAGTTTCCAAAATTGGTGAATCATCTGGATTTCTTGGGAGTCCAGGTGGGATGGATCATTGGACCCTGGTTTCTTTCCATTTTTGTAAATATGATTCCTTGGGAAAGCGTTATTCGAGTTTGGGACGTGCTTCTGTTTGAAGGAAATCGTGTTATGCTATTTCGAACAGCACTTGCTTTATTGGAGTTATATGGTCCTGCTATAGTCACCACTAAAGATGCAGGGGATGCTATTGTTTTGTTTCAGTCCCTTGTTGGCTCCACATTTGATAGCAGCCAGCTAGTTTTGACTGCATGCATGGGATTTTTAGCTATAACTGAAACTAGATTGAAAGAATTGAGAGATAAGCACCGGCCAACTGTATTAGAAGTAGTTGAGGAAAGAGCTAGGGCTAAGAAATGGAAGGATTCAAAAGGGCTATCAGCTAAGCTGTACAGTTTTAAGCATGATCCTACTATAACAGAAGAAAAAAGTACTACTGAAGAAGAAAGCGCCAATGGAAATGTATCTCAATCGAAATCTGATTCCTGTAATCTAGATGAAATGCTTAATGGCCTATCTCTTTCTTCAGAACTAGATTCCTTATCGGATCCTCAGGACCAGGTGGATTGGTTGAAGGTTGAGTTATGCAGGGTGCTGGAGGAGAAAAGATCTTCTGTACTCAGATCCGAGGAGTTGGAGACGGCACTTATGGAGATTGTCAGGCATGATAATCGACGAGAATTAAGTGCAAAGGTTGAGCAGTTGGAGCACGAGGTGGCTGAGCTACATCAAGCCCTTGAGGACAAGACAGAGCAAGAAGCTGCAATGCTTAAGGTATTGATGTTGGTAGAGCAAGAACAAAAGGTAACTGAAGAAGCCAGAATAAGTGCCGAGCAAGAGGCAATAACACAGAAACATGCACTTTATGTGCTTCAGGAAAAATATGACAAAGCTATGTCTTCACTTACTGAAATGGAAAAGAGGGTAAAAGTGGCAGAATCAATGCTGGAGGCTACATTGCAATATGAATCTGGCCAAGCTAAAGCTTTATCTCCACGGTCCTTGCCAGGCTCAACGCAGGGAAATCCCACAAGGAAGATACCTCTTCTGTCATTTGGACTTGGTTGGCGTGACAGGATAAAGAGATCCAATGACAGTAAATCAACCAATGAACAAAGTGACCCACCAATTCCACAAGAGGAAACCACTCCCACTCCACAAGAGAAAACTTCTCCCACTCCACAGGAAAAAACTGGTGAGGAAGTGCAGGAACATGTAGAGGGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009553 GO:0009559 GO:0009561 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009628 GO:0009639 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009987 GO:0010033 GO:0010197 GO:0010201 GO:0010218 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046982 GO:0046983 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

838

Amino Acids

95.17

Weight (kDa)

4.83

Isoelectric Point (pI)

54.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	270 - 481	1.1e-54	Rab-GTPase-TBC domain
RabGap-TBC_2	PF23436	342 - 496	1.3e-24	RabGAP TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35940 AT2G35940 AT2G35940
fragaria_vesca	FvH4_6g20350 FvH4_6g20350 FvH4_6g20350 FvH4_6g20350 FvH4_6g20350 FvH4_6g20350 FvH4_6g20350 FvH4_6g20350 FvH4_6g20350
malus_domestica	MD12G1040700.v1.1 MD14G1039700.v1.1
prunus_persica	Prupe.7G094300_v2.0.a1
pyrus_communis	pycom12g03480 pycom14g03390 pycom14g03400
rosa_chinensis	RchiOBHm_Chr3g0475961
rosa_laevigata	RLG00000023795
rosa_multiflora	Rmu_sc0000585.1_g000030
rosa_roxburghii	Rroxscaffold_6G00405580
rosa_rugosa	Rorug03G0152500 Rorug03G0152600 Rorug03G0152700 Rorug03G0152700
rosa_samantha	Rh3AG203400 Rh3BG233000 Rh3CG228700 Rh3DG228900
rosa_wichuraiana	Rw3G018490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	775
AclWI	GGATC	9 cut(s)	362, 733, 746, 1307, 1688, 1829, 1842, 1905, 2367
AcoI	YGGCCR	2 cut(s)	1598, 2260
AcsI	RAATTY	2 cut(s)	1021, 1090
AcuI	CTGAAG	8 cut(s)	246, 369, 909, 1209, 1746, 1797, 2118, 2144
AcyI	GRCGYC	1 cut(s)	51
AdeI	CACNNNGTG	1 cut(s)	2002
AfaI	GTAC	6 cut(s)	84, 982, 1076, 1679, 1720, 1905
AfeI	AGCGCT	1 cut(s)	26
AfiI	CCNNNNNNNGG	4 cut(s)	435, 775, 1070, 1071
AflII	CTTAAG	1 cut(s)	2057
AflIII	ACRYGT	1 cut(s)	2500
AgsI	TTSAA	9 cut(s)	161, 197, 263, 458, 652, 1385, 1576, 1656, 1861
AhlI	ACTAGT	1 cut(s)	1234
AjiI	CACGTC	1 cut(s)	1372
AjnI	CCWGG	9 cut(s)	44, 768, 882, 988, 1080, 1287, 1310, 1845, 2293
Alw21I	GWGCWC	2 cut(s)	191, 1998
Alw26I	GTCTC	2 cut(s)	64, 1919
AlwI	GGATC	9 cut(s)	362, 733, 746, 1307, 1688, 1829, 1842, 1905, 2367
AlwNI	CAGNNNCTG	1 cut(s)	775
Aor51HI	AGCGCT	1 cut(s)	26
AoxI	GGCC	3 cut(s)	1598, 1798, 2260
ApeKI	GCWGC	2 cut(s)	1518, 2048
ApoI	RAATTY	2 cut(s)	1021, 1090
ArsI	GACNNNNNNTTYG	2 cut(s)	1154, 1186
Asp700I	GAANNNNTTC	3 cut(s)	152, 549, 1248
AspLEI	GCGC	2 cut(s)	27, 1739
AspS9I	GGNCC	7 cut(s)	415, 426, 1213, 1307, 1439, 1843, 2286
AsuHPI	GGTGA	3 cut(s)	1273, 1444, 2495
AsuII	TTCGAA	1 cut(s)	1408
AvaII	GGWCC	7 cut(s)	415, 426, 1213, 1307, 1439, 1843, 2286
AxyI	CCTNAGG	2 cut(s)	1125, 1839
BalI	TGGCCA	1 cut(s)	2262
BamHI	GGATCC	2 cut(s)	738, 1834
BauI	CACGAG	1 cut(s)	1997
BbsI	GAAGAC	2 cut(s)	594, 2178
Bbv12I	GWGCWC	2 cut(s)	191, 1998
BbvI	GCAGC	2 cut(s)	1530, 2035
BccI	CCATC	8 cut(s)	537, 544, 569, 638, 674, 750, 1169, 1290
BceAI	ACGGC	1 cut(s)	1944
BcgI	CGANNNNNNTGC	2 cut(s)	1940, 1974
BciT130I	CCWGG	9 cut(s)	46, 770, 884, 990, 1082, 1289, 1312, 1847, 2295
BclI	TGATCA	1 cut(s)	709
BcoDI	GTCTC	2 cut(s)	64, 1919
BcuI	ACTAGT	1 cut(s)	1234
BfaI	CTAG	6 cut(s)	1235, 1526, 1569, 1632, 1781, 1820
BfmI	CTRYAG	2 cut(s)	231, 1446
BfoI	RGCGCY	2 cut(s)	28, 1740
BfrI	CTTAAG	1 cut(s)	2057
BglII	AGATCT	2 cut(s)	808, 1895
BisI	GCNGC	2 cut(s)	1519, 2049
BlpI	GCTNAGC	2 cut(s)	1671, 2007
BlsI	GCNGC	2 cut(s)	1520, 2050
BmcAI	AGTACT	1 cut(s)	1720
Bme1390I	CCNGG	9 cut(s)	46, 770, 884, 990, 1082, 1289, 1312, 1847, 2295
Bme18I	GGWCC	7 cut(s)	415, 426, 1213, 1307, 1439, 1843, 2286
BmgBI	CACGTC	1 cut(s)	1372
BmgT120I	GGNCC	7 cut(s)	415, 426, 1213, 1307, 1439, 1843, 2286
BmiI	GGNNCC	5 cut(s)	740, 767, 1309, 1504, 1836
BmrFI	CCNGG	9 cut(s)	46, 770, 884, 990, 1082, 1289, 1312, 1847, 2295
BmsI	GCATC	5 cut(s)	553, 592, 1110, 1453, 1462
BpiI	GAAGAC	2 cut(s)	594, 2178
BpmI	CTGGAG	3 cut(s)	797, 1904, 2255
Bpu1102I	GCTNAGC	2 cut(s)	1671, 2007
Bpu14I	TTCGAA	1 cut(s)	1408
BpuEI	CTTGAG	2 cut(s)	37, 2045
BsaAI	YACGTR	1 cut(s)	980
BsaHI	GRCGYC	1 cut(s)	51
BsaI	GGTCTC	1 cut(s)	64
BsaJI	CCNNGG	6 cut(s)	45, 761, 1310, 1343, 1914, 2282
BsaXI	ACNNNNNCTCC	4 cut(s)	1275, 1305, 2425, 2455
Bsc4I	CCNNNNNNNGG	4 cut(s)	435, 775, 1070, 1071
Bse118I	RCCGGY	1 cut(s)	1596
Bse1I	ACTGG	3 cut(s)	780, 907, 2485
Bse21I	CCTNAGG	2 cut(s)	1125, 1839
Bse3DI	GCAATG	3 cut(s)	1092, 2058, 2243
BseBI	CCWGG	9 cut(s)	46, 770, 884, 990, 1082, 1289, 1312, 1847, 2295
BseDI	CCNNGG	6 cut(s)	45, 761, 1310, 1343, 1914, 2282
BseGI	GGATG	8 cut(s)	440, 580, 685, 730, 742, 994, 1301, 1477
BseLI	CCNNNNNNNGG	4 cut(s)	435, 775, 1070, 1071
BseMI	GCAATG	3 cut(s)	1092, 2058, 2243
BseMII	CTCAG	9 cut(s)	194, 267, 291, 826, 1116, 1220, 1853, 1921, 1998
BseNI	ACTGG	3 cut(s)	780, 907, 2485
BseRI	GAGGAG	4 cut(s)	134, 810, 1901, 1931
BseXI	GCAGC	2 cut(s)	1530, 2035
BsgI	GTGCAG	1 cut(s)	2513
BshFI	GGCC	3 cut(s)	1600, 1800, 2262
BsiHKAI	GWGCWC	2 cut(s)	191, 1998
BsiSI	CCGG	1 cut(s)	1597
BslFI	GGGAC	4 cut(s)	62, 766, 1382, 1477
BslI	CCNNNNNNNGG	4 cut(s)	435, 775, 1070, 1071
BsmAI	GTCTC	2 cut(s)	64, 1919
BsmBI	CGTCTC	1 cut(s)	1919
BsmFI	GGGAC	4 cut(s)	62, 766, 1382, 1477
BsmI	GAATGC	1 cut(s)	471
BsnI	GGCC	3 cut(s)	1600, 1800, 2262
Bso31I	GGTCTC	1 cut(s)	64
Bsp119I	TTCGAA	1 cut(s)	1408
Bsp1286I	GDGCHC	2 cut(s)	191, 1998
Bsp1407I	TGTACA	2 cut(s)	82, 1677
Bsp1720I	GCTNAGC	2 cut(s)	1671, 2007
BspANI	GGCC	3 cut(s)	1600, 1800, 2262
BspCNI	CTCAG	9 cut(s)	193, 268, 292, 825, 1117, 1219, 1852, 1920, 1999
BspLI	GGNNCC	5 cut(s)	740, 767, 1309, 1504, 1836
BspPI	GGATC	9 cut(s)	362, 733, 746, 1307, 1688, 1829, 1842, 1905, 2367
BspT104I	TTCGAA	1 cut(s)	1408
BspTI	CTTAAG	1 cut(s)	2057
BspTNI	GGTCTC	1 cut(s)	64
BsrDI	GCAATG	3 cut(s)	1092, 2058, 2243
BsrFI	RCCGGY	1 cut(s)	1596
BsrGI	TGTACA	2 cut(s)	82, 1677
BsrI	ACTGG	3 cut(s)	780, 907, 2485
BssAI	RCCGGY	1 cut(s)	1596
BssECI	CCNNGG	6 cut(s)	45, 761, 1310, 1343, 1914, 2282
BssNI	GRCGYC	1 cut(s)	51
BssSI	CACGAG	1 cut(s)	1997
BssT1I	CCWWGG	2 cut(s)	761, 1343
Bst2BI	CACGAG	1 cut(s)	1997
Bst2UI	CCWGG	9 cut(s)	46, 770, 884, 990, 1082, 1289, 1312, 1847, 2295
Bst4CI	ACNGT	5 cut(s)	698, 1606, 1682, 2286, 2384
Bst6I	CTCTTC	1 cut(s)	2337
BstACI	GRCGYC	1 cut(s)	51
BstAFI	CTTAAG	1 cut(s)	2057
BstAPI	GCANNNNNTGC	1 cut(s)	1472
BstAUI	TGTACA	2 cut(s)	82, 1677
BstBAI	YACGTR	1 cut(s)	980
BstBI	TTCGAA	1 cut(s)	1408
BstC8I	GCNNGC	5 cut(s)	222, 705, 831, 1523, 1540
BstDSI	CCRYGG	1 cut(s)	2282
BstENI	CCTNNNNNAGG	1 cut(s)	433
BstF5I	GGATG	8 cut(s)	440, 580, 685, 730, 742, 994, 1301, 1477
BstH2I	RGCGCY	2 cut(s)	28, 1740
BstHHI	GCGC	2 cut(s)	27, 1739
BstMAI	GTCTC	2 cut(s)	64, 1919
BstMWI	GCNNNNNNNGC	2 cut(s)	1472, 1993
BstNI	CCWGG	9 cut(s)	46, 770, 884, 990, 1082, 1289, 1312, 1847, 2295
BstNSI	RCATGY	3 cut(s)	1542, 2147, 2504
BstSCI	CCNGG	9 cut(s)	44, 768, 882, 988, 1080, 1287, 1310, 1845, 2293
BstSFI	CTRYAG	2 cut(s)	231, 1446
BstV1I	GCAGC	2 cut(s)	1530, 2035
BstV2I	GAAGAC	2 cut(s)	594, 2178
BstX2I	RGATCY	7 cut(s)	367, 738, 808, 1834, 1895, 1910, 2372
BstYI	RGATCY	7 cut(s)	367, 738, 808, 1834, 1895, 1910, 2372
Bsu36I	CCTNAGG	2 cut(s)	1125, 1839
BsuRI	GGCC	3 cut(s)	1600, 1800, 2262
BtgI	CCRYGG	1 cut(s)	2282
BtgZI	GCGATG	1 cut(s)	321
BtrI	CACGTC	1 cut(s)	1372
BtsCI	GGATG	8 cut(s)	440, 580, 685, 730, 742, 994, 1301, 1477
BtsIMutI	CAGTG	1 cut(s)	703
Cac8I	GCNNGC	5 cut(s)	222, 705, 831, 1523, 1540
CaiI	CAGNNNCTG	1 cut(s)	775
CfoI	GCGC	2 cut(s)	27, 1739
Cfr10I	RCCGGY	1 cut(s)	1596
Cfr13I	GGNCC	7 cut(s)	415, 426, 1213, 1307, 1439, 1843, 2286
CseI	GACGC	1 cut(s)	59
CsiI	ACCWGGT	1 cut(s)	1845
Csp6I	GTAC	6 cut(s)	83, 981, 1075, 1678, 1719, 1904
CspCI	CAANNNNNGTGG	2 cut(s)	2271, 2306
CviQI	GTAC	6 cut(s)	83, 981, 1075, 1678, 1719, 1904
DraIII	CACNNNGTG	1 cut(s)	2002
EaeI	YGGCCR	2 cut(s)	1598, 2260
Eam1104I	CTCTTC	1 cut(s)	2337
EarI	CTCTTC	1 cut(s)	2337
Eco130I	CCWWGG	2 cut(s)	761, 1343
Eco31I	GGTCTC	1 cut(s)	64
Eco47I	GGWCC	7 cut(s)	415, 426, 1213, 1307, 1439, 1843, 2286
Eco47III	AGCGCT	1 cut(s)	26
Eco57I	CTGAAG	8 cut(s)	246, 369, 909, 1209, 1746, 1797, 2118, 2144
Eco81I	CCTNAGG	2 cut(s)	1125, 1839
EcoNI	CCTNNNNNAGG	1 cut(s)	433
EcoRI	GAATTC	1 cut(s)	1021
EcoRII	CCWGG	9 cut(s)	44, 768, 882, 988, 1080, 1287, 1310, 1845, 2293
EcoT14I	CCWWGG	2 cut(s)	761, 1343
EcoT22I	ATGCAT	1 cut(s)	1544
ErhI	CCWWGG	2 cut(s)	761, 1343
Esp3I	CGTCTC	1 cut(s)	1919
FalI	AAGNNNNNCTT	2 cut(s)	516, 548
FaqI	GGGAC	4 cut(s)	62, 766, 1382, 1477
FbaI	TGATCA	1 cut(s)	709
Fnu4HI	GCNGC	2 cut(s)	1519, 2049
FokI	GGATG	8 cut(s)	427, 587, 692, 729, 737, 981, 1308, 1484
Fsp4HI	GCNGC	2 cut(s)	1519, 2049
FspBI	CTAG	6 cut(s)	1235, 1526, 1569, 1632, 1781, 1820
GlaI	GCGC	2 cut(s)	26, 1738
GluI	GCNGC	2 cut(s)	1519, 2049
GsuI	CTGGAG	3 cut(s)	797, 1904, 2255
HaeII	RGCGCY	2 cut(s)	28, 1740
HaeIII	GGCC	3 cut(s)	1600, 1800, 2262
HapII	CCGG	1 cut(s)	1597
HgaI	GACGC	1 cut(s)	59
HhaI	GCGC	2 cut(s)	27, 1739
Hin1I	GRCGYC	1 cut(s)	51
Hin6I	GCGC	2 cut(s)	25, 1737
HinP1I	GCGC	2 cut(s)	25, 1737
HindIII	AAGCTT	3 cut(s)	654, 831, 2271
HpaII	CCGG	1 cut(s)	1597
HphI	GGTGA	3 cut(s)	1273, 1444, 2495
Hpy166II	GTNNAC	1 cut(s)	1213
Hpy188III	TCNNGA	9 cut(s)	16, 194, 581, 599, 746, 1271, 1781, 1841, 2162
Hpy8I	GTNNAC	1 cut(s)	1213
Hpy99I	CGWCG	3 cut(s)	858, 1166, 1965
HpyCH4III	ACNGT	5 cut(s)	698, 1606, 1682, 2286, 2384
HpyCH4IV	ACGT	2 cut(s)	979, 1371
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1472, 1993
HpySE526I	ACGT	2 cut(s)	979, 1371
Hsp92I	GRCGYC	1 cut(s)	51
HspAI	GCGC	2 cut(s)	25, 1737
Ksp22I	TGATCA	1 cut(s)	709
LmnI	GCTCC	4 cut(s)	614, 765, 1508, 1993
Lsp1109I	GCAGC	2 cut(s)	1530, 2035
LweI	GCATC	5 cut(s)	553, 592, 1110, 1453, 1462
MabI	ACCWGGT	1 cut(s)	1845
MaeI	CTAG	6 cut(s)	1235, 1526, 1569, 1632, 1781, 1820
MaeII	ACGT	2 cut(s)	979, 1371
MaeIII	GTNAC	6 cut(s)	629, 692, 1450, 2092, 2357, 2405
MflI	RGATCY	7 cut(s)	367, 738, 808, 1834, 1895, 1910, 2372
MhlI	GDGCHC	2 cut(s)	191, 1998
MlsI	TGGCCA	1 cut(s)	2262
MluCI	AATT	8 cut(s)	215, 925, 1021, 1090, 1256, 1580, 1967, 2415
MluNI	TGGCCA	1 cut(s)	2262
MlyI	GAGTC	2 cut(s)	788, 1293
MmeI	TCCRAC	4 cut(s)	12, 998, 1902, 1971
Mox20I	TGGCCA	1 cut(s)	2262
Mph1103I	ATGCAT	1 cut(s)	1544
MroXI	GAANNNNTTC	3 cut(s)	152, 549, 1248
MscI	TGGCCA	1 cut(s)	2262
MseI	TTAA	4 cut(s)	1686, 1794, 1970, 2058
Msp20I	TGGCCA	1 cut(s)	2262
MspA1I	CMGCKG	1 cut(s)	224
MspCI	CTTAAG	1 cut(s)	2057
MspI	CCGG	1 cut(s)	1597
MspR9I	CCNGG	9 cut(s)	46, 770, 884, 990, 1082, 1289, 1312, 1847, 2295
Mva1269I	GAATGC	1 cut(s)	471
MvaI	CCWGG	9 cut(s)	46, 770, 884, 990, 1082, 1289, 1312, 1847, 2295
MwoI	GCNNNNNNNGC	2 cut(s)	1472, 1993
NlaIV	GGNNCC	5 cut(s)	740, 767, 1309, 1504, 1836
NmeAIII	GCCGAG	1 cut(s)	2143
NmuCI	GTSAC	3 cut(s)	1450, 2357, 2405
NsiI	ATGCAT	1 cut(s)	1544
NspI	RCATGY	3 cut(s)	1542, 2147, 2504
NspV	TTCGAA	1 cut(s)	1408
PaeI	GCATGC	1 cut(s)	1542
PciI	ACATGT	1 cut(s)	2500
PctI	GAATGC	1 cut(s)	471
PdmI	GAANNNNTTC	3 cut(s)	152, 549, 1248
PflMI	CCANNNNNTGG	1 cut(s)	775
PfoI	TCCNGGA	1 cut(s)	988
PkrI	GCNGC	2 cut(s)	1520, 2050
PleI	GAGTC	2 cut(s)	787, 1292
PpsI	GAGTC	2 cut(s)	787, 1292
Ppu21I	YACGTR	1 cut(s)	980
PscI	ACATGT	1 cut(s)	2500
Psp6I	CCWGG	9 cut(s)	44, 768, 882, 988, 1080, 1287, 1310, 1845, 2293
PspGI	CCWGG	9 cut(s)	44, 768, 882, 988, 1080, 1287, 1310, 1845, 2293
PspN4I	GGNNCC	5 cut(s)	740, 767, 1309, 1504, 1836
PspPI	GGNCC	7 cut(s)	415, 426, 1213, 1307, 1439, 1843, 2286
PstNI	CAGNNNCTG	1 cut(s)	775
PsuI	RGATCY	7 cut(s)	367, 738, 808, 1834, 1895, 1910, 2372
PvuII	CAGCTG	1 cut(s)	224
RsaI	GTAC	6 cut(s)	84, 982, 1076, 1679, 1720, 1905
RsaNI	GTAC	6 cut(s)	83, 981, 1075, 1678, 1719, 1904
SaqAI	TTAA	4 cut(s)	1686, 1794, 1970, 2058
SatI	GCNGC	2 cut(s)	1519, 2049
Sau96I	GGNCC	7 cut(s)	415, 426, 1213, 1307, 1439, 1843, 2286
ScaI	AGTACT	1 cut(s)	1720
SchI	GAGTC	2 cut(s)	788, 1293
ScrFI	CCNGG	9 cut(s)	46, 770, 884, 990, 1082, 1289, 1312, 1847, 2295
SduI	GDGCHC	2 cut(s)	191, 1998
SexAI	ACCWGGT	1 cut(s)	1845
SfaNI	GCATC	5 cut(s)	553, 592, 1110, 1453, 1462
SfcI	CTRYAG	2 cut(s)	231, 1446
SfuI	TTCGAA	1 cut(s)	1408
SinI	GGWCC	7 cut(s)	415, 426, 1213, 1307, 1439, 1843, 2286
SmlI	CTYRAG	3 cut(s)	16, 2024, 2057
SmoI	CTYRAG	3 cut(s)	16, 2024, 2057
SpeI	ACTAGT	1 cut(s)	1234
SphI	GCATGC	1 cut(s)	1542
Sse9I	AATT	8 cut(s)	215, 925, 1021, 1090, 1256, 1580, 1967, 2415
SspI	AATATT	1 cut(s)	869
SspMI	CTAG	6 cut(s)	1235, 1526, 1569, 1632, 1781, 1820
StyD4I	CCNGG	9 cut(s)	44, 768, 882, 988, 1080, 1287, 1310, 1845, 2293
StyI	CCWWGG	2 cut(s)	761, 1343
TaaI	ACNGT	5 cut(s)	698, 1606, 1682, 2286, 2384
TaiI	ACGT	2 cut(s)	982, 1374
TaqI	TCGA	5 cut(s)	1161, 1360, 1408, 1760, 1960
TasI	AATT	8 cut(s)	215, 925, 1021, 1090, 1256, 1580, 1967, 2415
TatI	WGTACW	4 cut(s)	82, 1677, 1718, 1903
Tru1I	TTAA	4 cut(s)	1686, 1794, 1970, 2058
Tru9I	TTAA	4 cut(s)	1686, 1794, 1970, 2058
TscAI	CASTG	1 cut(s)	703
TseFI	GTSAC	3 cut(s)	1450, 2357, 2405
TseI	GCWGC	2 cut(s)	1518, 2048
Tsp45I	GTSAC	3 cut(s)	1450, 2357, 2405
TspRI	CASTG	1 cut(s)	703
Van91I	CCANNNNNTGG	1 cut(s)	775
Vha464I	CTTAAG	1 cut(s)	2057
VpaK11BI	GGWCC	7 cut(s)	415, 426, 1213, 1307, 1439, 1843, 2286
XagI	CCTNNNNNAGG	1 cut(s)	433
XapI	RAATTY	2 cut(s)	1021, 1090
XbaI	TCTAGA	1 cut(s)	1780
XceI	RCATGY	3 cut(s)	1542, 2147, 2504
XmnI	GAANNNNTTC	3 cut(s)	152, 549, 1248
XspI	CTAG	6 cut(s)	1235, 1526, 1569, 1632, 1781, 1820
ZrmI	AGTACT	1 cut(s)	1720
Zsp2I	ATGCAT	1 cut(s)	1544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.