Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0004819

Physical Location & Seq

Genomic Coordinates Reverse (-)

28345173 .. 28347893

Gene Structure 2721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023795

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2118 bp

ATGGCGACGTACTTTCATGGTAACTCGGAAATCCAACCCCCCGACGGCGGCTTGCAGACTCTGGTTCTCATGAACCACGGCGGTTACGTACAGTACTCGGATACTACTCAACAGCAACAGTCACCGTCGGCAGCGACTAACCAGCTTGTCTTCCTCAACTCTGCTGGGGCCAATCCACTCGCTCAGGGCTCCACTCTCCCCCACGCGCCGCCCTCCCACACCCAGCAATTTGTCGGCATACCGCTCCCGACCGTGTCCTCTCAGGACCCCAGTAACTCGCAGTCCATGCATCCCCACCACGACATGGCTGCTCTCCACGCCTTCATGCCTCGCATTCAGACTCAGTACGCGCTCTGGAACTCAATCGACCCTTCCGCGCGTGAAACCCCACGCGCTCAGCAGGGCCTGTCACTGAGTCTGTCGTCCCAGCAGCCCGGGTTCGGGTCCTTCCGTGGCGCTGATCGGGAAGTCCCGACTGGTGAGGATATTCGGGTTTCGAGCGGGTCCAACTCTTCGGCTTCGGGTGTGACTAATGGGGTTTCGGGTATGCAGAGCGTGTTGCTGAGCTCCAAGTACTTGAAGGCTGCACAGGAGCTTCTTGATGAGGTTGTGAACGTTGGAAATGGGATGAGGTCTGACTTGCCTAAGAAGGGTAATGGGAACCAGAGTAAGGCCATGGCCGAGTCTTCTATGGCTGCCGCCGGAGATGGTTCGATCGGCGGTGATCAAGATAGTGGGAAGCGTGCTGTAGAGCTAAGCACTGCAGAGAGGCAGGAAATTCAGATGAAGAAGGGAAAGCTCATCAGCATGCTTGATGAGGTGGATCAAAGGTACAGACAGTACCATCGCCAGATGCAAATGGTAATTTCGTCGTTCGAGCAAGCATCCGGGCTTGGTTCAGCAAGAACGTACACTGCTCTTGCACTTCAAACAATCTCAAAGCAGTTCAGGTGCTTGAAAGATGCAATAACAAACCAAATTCGAGCCGCCAACAAGAGCTTAGGCGAAGAGGATTGCAGTGGGGGGAAGATTGAAGGTTCAAGGCTCAAATATGTTGACCACCAGCTCAGGCAGCAAAGAGCTCTCCAACAGTTGGGAATGATCCAGCACAATGCTTGGAGACCCCAAAGAGGATTGCCCGAAAGATCTGTTTCTGTTCTTCGCGCTTGGCTTTTTGAACATTTTCTGCACCCCTATCCAAAGGATTCAGACAAGCATATGCTTGCAAAACAAACAGGGCTTACTAGGAGCCAGGTTTCAAATTGGTTCATAAATGCTCGAGTTCGTCTGTGGAAGCCAATGGTGGAAGAAATGTACTTGGAGGAAATCAAGGAGAATGAGCTCAATGGATCATCTGAGAAGATGAGCAAGAGCAATGAGGATTCTGCATCAAAGTCCACACCTCCGCAAGAGAGAAGTCCCGCTACTGATCAGAACCAAACCAATAGTACTTTCAATTCCAAACAAGAGACTTCCACAAATCATATTGCTGCTCCTCCATCAATGTCAATGTCAATGTCAATGTCAATGTCCTCAGCTTCAACATCTCCCACAAACATTGTTCGGAACCAGTCCGGATTCAGCCTCATCGGGTCATCAGAATTGGATGGCATCACACAAGGTAGTCCAAAGAAGCCAAGGAGCACTGAATTAATGCATTCCCCAAATAGTATGATGAACCATATGGATGTCAAGCCTCAAGAGGTGAGCAATGAGCAAGTTTCTATGAAATTTGGGGATGAGAGGCAGAGCAGAGATGGCTACTCATTCATGGGAGGACAGACCAATTTTATTGGGAATTTCGGGCAATACCCAATTGGTGAAATTGGGAGGTTCGATGCAGACCAATTCACACCACGGTTCTCAGGCAATGGTGTCTCTCTCACTCTTGGTCTTCCTCATTGTGAAAACCTCTCCTTGTCTGGTGCCCATCACCAAACTTTTCTCCCAAACCAAAACATTCAATTGGGGAGAAGAGTTGATCACATTGGAGAACCAAATGATCAGTTTGGTACCATGAACACTTCAGCTCCTCACTCTTCTGCCGGATTCGAAAGCATCGACATTCAGAATCGAAAGAGGTTCGTAGCACAATTGTTGCCAGACTTTGTGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009553 GO:0009559 GO:0009561 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009628 GO:0009639 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009987 GO:0010033 GO:0010197 GO:0010201 GO:0010218 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046982 GO:0046983 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

706

Amino Acids

77.25

Weight (kDa)

6.75

Isoelectric Point (pI)

49.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POX	PF07526	186 - 324	6.1e-50	Associated with HOX
Homeobox_KN	PF05920	390 - 429	1.9e-19	Homeobox KN domain
Homeodomain	PF00046	397 - 429	1.2e-06	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35940 AT2G35940 AT2G35940
fragaria_vesca	FvH4_6g20350 FvH4_6g20350 FvH4_6g20350 FvH4_6g20350 FvH4_6g20350 FvH4_6g20350 FvH4_6g20350 FvH4_6g20350 FvH4_6g20350
malus_domestica	MD12G1040700.v1.1 MD14G1039700.v1.1
prunus_persica	Prupe.7G094300_v2.0.a1
pyrus_communis	pycom12g03480 pycom14g03390 pycom14g03400
rosa_chinensis	RchiOBHm_Chr3g0475961
rosa_laevigata	RLG00000023795
rosa_multiflora	Rmu_sc0000585.1_g000030
rosa_roxburghii	Rroxscaffold_6G00405580
rosa_rugosa	Rorug03G0152500 Rorug03G0152600 Rorug03G0152700 Rorug03G0152700
rosa_samantha	Rh3AG203400 Rh3BG233000 Rh3CG228700 Rh3DG228900
rosa_wichuraiana	Rw3G018490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	2012
AccB1I	GGYRCC	2 cut(s)	1925, 2012
AccB7I	CCANNNNNTGG	2 cut(s)	304, 1093
AccBSI	CCGCTC	2 cut(s)	244, 501
AccII	CGCG	6 cut(s)	206, 350, 377, 379, 393, 1164
AccIII	TCCGGA	1 cut(s)	1574
AclI	AACGTT	1 cut(s)	615
AclWI	GGATC	3 cut(s)	831, 1096, 1357
AcoI	YGGCCR	1 cut(s)	678
AcsI	RAATTY	4 cut(s)	777, 978, 1730, 1798
AcuI	CTGAAG	1 cut(s)	2010
AfiI	CCNNNNNNNGG	9 cut(s)	44, 47, 304, 440, 441, 650, 670, 1093, 1130
AjnI	CCWGG	1 cut(s)	1251
AjuI	GAANNNNNNNTTGG	2 cut(s)	1436, 1468
Alw21I	GWGCWC	4 cut(s)	569, 1084, 1344, 1646
Alw26I	GTCTC	3 cut(s)	1114, 1463, 1882
AlwI	GGATC	3 cut(s)	831, 1096, 1357
AlwNI	CAGNNNCTG	2 cut(s)	61, 406
Ama87I	CYCGRG	2 cut(s)	434, 1278
Aor13HI	TCCGGA	1 cut(s)	1574
AoxI	GGCC	5 cut(s)	168, 403, 672, 678, 2112
ApeKI	GCWGC	7 cut(s)	131, 308, 430, 584, 695, 1072, 1490
ApoI	RAATTY	4 cut(s)	777, 978, 1730, 1798
AseI	ATTAAT	1 cut(s)	1652
Asp700I	GAANNNNTTC	1 cut(s)	1182
Asp718I	GGTACC	1 cut(s)	2012
AspLEI	GCGC	6 cut(s)	208, 352, 379, 395, 458, 1166
AspS9I	GGNCC	5 cut(s)	168, 265, 403, 444, 504
AsuC2I	CCSGG	3 cut(s)	435, 436, 889
AsuHPI	GGTGA	6 cut(s)	114, 491, 734, 1717, 1832, 1925
AsuII	TTCGAA	1 cut(s)	2052
AvaI	CYCGRG	2 cut(s)	434, 1278
AvaII	GGWCC	3 cut(s)	265, 444, 504
BaeGI	GKGCMC	1 cut(s)	1930
BanI	GGYRCC	2 cut(s)	1925, 2012
BanII	GRGCYC	4 cut(s)	191, 569, 1084, 1344
BarI	GAAGNNNNNNTAC	2 cut(s)	1408, 1440
BbsI	GAAGAC	3 cut(s)	142, 678, 1886
Bbv12I	GWGCWC	4 cut(s)	569, 1084, 1344, 1646
BbvCI	CCTCAGC	1 cut(s)	1534
BbvI	GCAGC	7 cut(s)	143, 295, 442, 571, 682, 1084, 1477
BccI	CCATC	6 cut(s)	701, 852, 1507, 1601, 1751, 1938
BceAI	ACGGC	2 cut(s)	61, 94
BcgI	CGANNNNNNTGC	2 cut(s)	290, 324
BciT130I	CCWGG	1 cut(s)	1253
BciVI	GTATCC	1 cut(s)	94
BclI	TGATCA	4 cut(s)	724, 1429, 1981, 2002
BcnI	CCSGG	3 cut(s)	435, 436, 889
BcoDI	GTCTC	3 cut(s)	1114, 1463, 1882
BfaI	CTAG	1 cut(s)	1245
BfmI	CTRYAG	2 cut(s)	747, 762
BfoI	RGCGCY	1 cut(s)	459
BfuI	GTATCC	1 cut(s)	94
BglII	AGATCT	1 cut(s)	1145
BlpI	GCTNAGC	3 cut(s)	396, 563, 755
BmcAI	AGTACT	3 cut(s)	95, 575, 1450
Bme1390I	CCNGG	4 cut(s)	435, 436, 889, 1253
Bme18I	GGWCC	3 cut(s)	265, 444, 504
BmeT110I	CYCGRG	2 cut(s)	434, 1278
BmgT120I	GGNCC	5 cut(s)	168, 265, 403, 444, 504
BmrFI	CCNGG	4 cut(s)	435, 436, 889, 1253
BmrI	ACTGGG	1 cut(s)	264
BmsI	GCATC	8 cut(s)	298, 843, 893, 952, 1397, 1620, 1828, 2067
BmuI	ACTGGG	1 cut(s)	264
BpiI	GAAGAC	3 cut(s)	142, 678, 1886
Bpu10I	CCTNAGC	4 cut(s)	183, 1000, 1067, 1534
Bpu1102I	GCTNAGC	3 cut(s)	396, 563, 755
Bpu14I	TTCGAA	1 cut(s)	2052
BpuEI	CTTGAG	1 cut(s)	1683
BpuMI	CCSGG	3 cut(s)	435, 436, 889
BsaAI	YACGTR	1 cut(s)	88
BsaI	GGTCTC	1 cut(s)	1114
BsaJI	CCNNGG	6 cut(s)	76, 434, 451, 675, 1637, 1856
BsaWI	WCCGGW	1 cut(s)	1574
BsaXI	ACNNNNNCTCC	2 cut(s)	2014, 2044
Bsc4I	CCNNNNNNNGG	9 cut(s)	44, 47, 304, 440, 441, 650, 670, 1093, 1130
Bse1I	ACTGG	3 cut(s)	270, 481, 1570
Bse3DI	GCAATG	3 cut(s)	1381, 1717, 1876
BseAI	TCCGGA	1 cut(s)	1574
BseBI	CCWGG	1 cut(s)	1253
BseDI	CCNNGG	6 cut(s)	76, 434, 451, 675, 1637, 1856
BseGI	GGATG	6 cut(s)	289, 633, 884, 1612, 1693, 1744
BseLI	CCNNNNNNNGG	9 cut(s)	44, 47, 304, 440, 441, 650, 670, 1093, 1130
BseMI	GCAATG	3 cut(s)	1381, 1717, 1876
BseNI	ACTGG	3 cut(s)	270, 481, 1570
BseRI	GAGGAG	2 cut(s)	1485, 2022
BseSI	GKGCMC	1 cut(s)	1930
BseXI	GCAGC	7 cut(s)	143, 295, 442, 571, 682, 1084, 1477
BseYI	CCCAGC	3 cut(s)	164, 222, 426
BsgI	GTGCAG	2 cut(s)	570, 1172
Bsh1236I	CGCG	6 cut(s)	206, 350, 377, 379, 393, 1164
Bsh1285I	CGRYCG	2 cut(s)	252, 717
BshFI	GGCC	5 cut(s)	170, 405, 674, 680, 2114
BshNI	GGYRCC	2 cut(s)	1925, 2012
BsiEI	CGRYCG	2 cut(s)	252, 717
BsiHKAI	GWGCWC	4 cut(s)	569, 1084, 1344, 1646
BsiHKCI	CYCGRG	2 cut(s)	434, 1278
BsiSI	CCGG	5 cut(s)	435, 702, 888, 1575, 2046
BslFI	GGGAC	3 cut(s)	409, 455, 1404
BslI	CCNNNNNNNGG	9 cut(s)	44, 47, 304, 440, 441, 650, 670, 1093, 1130
BsmAI	GTCTC	3 cut(s)	1114, 1463, 1882
BsmFI	GGGAC	3 cut(s)	409, 455, 1404
BsmI	GAATGC	2 cut(s)	333, 1657
BsnI	GGCC	5 cut(s)	170, 405, 674, 680, 2114
Bso31I	GGTCTC	1 cut(s)	1114
BsoBI	CYCGRG	2 cut(s)	434, 1278
Bsp119I	TTCGAA	1 cut(s)	2052
Bsp1286I	GDGCHC	6 cut(s)	191, 569, 1084, 1344, 1646, 1930
Bsp13I	TCCGGA	1 cut(s)	1574
Bsp1720I	GCTNAGC	3 cut(s)	396, 563, 755
Bsp19I	CCATGG	1 cut(s)	675
BspANI	GGCC	5 cut(s)	170, 405, 674, 680, 2114
BspEI	TCCGGA	1 cut(s)	1574
BspFNI	CGCG	6 cut(s)	206, 350, 377, 379, 393, 1164
BspHI	TCATGA	1 cut(s)	69
BspMAI	CTGCAG	1 cut(s)	766
BspPI	GGATC	3 cut(s)	831, 1096, 1357
BspT104I	TTCGAA	1 cut(s)	2052
BspT107I	GGYRCC	2 cut(s)	1925, 2012
BspTNI	GGTCTC	1 cut(s)	1114
BsrBI	CCGCTC	2 cut(s)	244, 501
BsrDI	GCAATG	3 cut(s)	1381, 1717, 1876
BsrI	ACTGG	3 cut(s)	270, 481, 1570
BssECI	CCNNGG	6 cut(s)	76, 434, 451, 675, 1637, 1856
BssT1I	CCWWGG	2 cut(s)	675, 1637
Bst2UI	CCWGG	1 cut(s)	1253
Bst4CI	ACNGT	7 cut(s)	93, 120, 126, 253, 840, 1092, 1860
Bst6I	CTCTTC	4 cut(s)	517, 1002, 1969, 2044
BstAPI	GCANNNNNTGC	1 cut(s)	286
BstBAI	YACGTR	1 cut(s)	88
BstBI	TTCGAA	1 cut(s)	2052
BstC8I	GCNNGC	5 cut(s)	53, 744, 809, 882, 1224
BstDSI	CCRYGG	4 cut(s)	76, 451, 675, 1856
BstF5I	GGATG	6 cut(s)	289, 633, 884, 1612, 1693, 1744
BstFNI	CGCG	6 cut(s)	206, 350, 377, 379, 393, 1164
BstH2I	RGCGCY	1 cut(s)	459
BstHHI	GCGC	6 cut(s)	208, 352, 379, 395, 458, 1166
BstMAI	GTCTC	3 cut(s)	1114, 1463, 1882
BstMCI	CGRYCG	2 cut(s)	252, 717
BstMWI	GCNNNNNNNGC	4 cut(s)	286, 317, 1072, 1758
BstNI	CCWGG	1 cut(s)	1253
BstNSI	RCATGY	1 cut(s)	811
BstSCI	CCNGG	4 cut(s)	433, 434, 887, 1251
BstSFI	CTRYAG	2 cut(s)	747, 762
BstSLI	GKGCMC	1 cut(s)	1930
BstSNI	TACGTA	1 cut(s)	88
BstUI	CGCG	6 cut(s)	206, 350, 377, 379, 393, 1164
BstV1I	GCAGC	7 cut(s)	143, 295, 442, 571, 682, 1084, 1477
BstV2I	GAAGAC	3 cut(s)	142, 678, 1886
BstX2I	RGATCY	1 cut(s)	1145
BstYI	RGATCY	1 cut(s)	1145
BsuI	GTATCC	1 cut(s)	94
BsuRI	GGCC	5 cut(s)	170, 405, 674, 680, 2114
BtgI	CCRYGG	4 cut(s)	76, 451, 675, 1856
BtgZI	GCGATG	1 cut(s)	830
BtsCI	GGATG	6 cut(s)	289, 633, 884, 1612, 1693, 1744
BtsI	GCAGTG	3 cut(s)	759, 912, 1024
BtsIMutI	CAGTG	5 cut(s)	410, 759, 912, 1024, 1644
Cac8I	GCNNGC	5 cut(s)	53, 744, 809, 882, 1224
CaiI	CAGNNNCTG	2 cut(s)	61, 406
CciI	TCATGA	1 cut(s)	69
CfoI	GCGC	6 cut(s)	208, 352, 379, 395, 458, 1166
Cfr13I	GGNCC	5 cut(s)	168, 265, 403, 444, 504
Cfr9I	CCCGGG	1 cut(s)	434
CspCI	CAANNNNNGTGG	2 cut(s)	1540, 1575
CviAII	CATG	9 cut(s)	17, 70, 286, 304, 325, 676, 808, 1771, 2017
EaeI	YGGCCR	1 cut(s)	678
Eam1104I	CTCTTC	4 cut(s)	517, 1002, 1969, 2044
EarI	CTCTTC	4 cut(s)	517, 1002, 1969, 2044
Ecl136II	GAGCTC	3 cut(s)	567, 1082, 1342
Eco105I	TACGTA	1 cut(s)	88
Eco130I	CCWWGG	2 cut(s)	675, 1637
Eco24I	GRGCYC	4 cut(s)	191, 569, 1084, 1344
Eco31I	GGTCTC	1 cut(s)	1114
Eco47I	GGWCC	3 cut(s)	265, 444, 504
Eco53kI	GAGCTC	3 cut(s)	567, 1082, 1342
Eco57I	CTGAAG	1 cut(s)	2010
Eco88I	CYCGRG	2 cut(s)	434, 1278
EcoICRI	GAGCTC	3 cut(s)	567, 1082, 1342
EcoO109I	RGGNCCY	3 cut(s)	265, 403, 444
EcoRII	CCWGG	1 cut(s)	1251
EcoT14I	CCWWGG	2 cut(s)	675, 1637
EcoT22I	ATGCAT	2 cut(s)	291, 1659
EcoT38I	GRGCYC	4 cut(s)	191, 569, 1084, 1344
ErhI	CCWWGG	2 cut(s)	675, 1637
FaeI	CATG	9 cut(s)	20, 73, 289, 307, 328, 679, 811, 1774, 2020
FaqI	GGGAC	3 cut(s)	409, 455, 1404
FatI	CATG	9 cut(s)	16, 69, 285, 303, 324, 675, 807, 1770, 2016
FauI	CCCGC	2 cut(s)	494, 1429
FauNDI	CATATG	2 cut(s)	1218, 1683
FbaI	TGATCA	4 cut(s)	724, 1429, 1981, 2002
FokI	GGATG	6 cut(s)	276, 640, 871, 1619, 1700, 1751
FriOI	GRGCYC	4 cut(s)	191, 569, 1084, 1344
FspBI	CTAG	1 cut(s)	1245
GlaI	GCGC	6 cut(s)	207, 351, 378, 394, 457, 1165
GsaI	CCCAGC	3 cut(s)	168, 226, 430
HaeII	RGCGCY	1 cut(s)	459
HaeIII	GGCC	5 cut(s)	170, 405, 674, 680, 2114
HapII	CCGG	5 cut(s)	435, 702, 888, 1575, 2046
HhaI	GCGC	6 cut(s)	208, 352, 379, 395, 458, 1166
Hin1II	CATG	9 cut(s)	20, 73, 289, 307, 328, 679, 811, 1774, 2020
Hin6I	GCGC	6 cut(s)	206, 350, 377, 393, 456, 1164
HinP1I	GCGC	6 cut(s)	206, 350, 377, 393, 456, 1164
HincII	GTYRAC	1 cut(s)	1057
HindII	GTYRAC	1 cut(s)	1057
HinfI	GANTC	9 cut(s)	58, 340, 415, 683, 1205, 1382, 1578, 2049, 2071
HpaII	CCGG	5 cut(s)	435, 702, 888, 1575, 2046
HphI	GGTGA	6 cut(s)	114, 491, 734, 1717, 1832, 1925
Hpy166II	GTNNAC	4 cut(s)	613, 912, 1057, 1398
Hpy8I	GTNNAC	4 cut(s)	613, 912, 1057, 1398
Hpy99I	CGWCG	4 cut(s)	10, 47, 130, 874
HpyAV	CCTTC	7 cut(s)	331, 381, 457, 574, 643, 784, 1028
HpyCH4III	ACNGT	7 cut(s)	93, 120, 126, 253, 840, 1092, 1860
HpyCH4IV	ACGT	4 cut(s)	8, 87, 615, 908
HpyF10VI	GCNNNNNNNGC	4 cut(s)	286, 317, 1072, 1758
HpySE526I	ACGT	4 cut(s)	8, 87, 615, 908
Hsp92II	CATG	9 cut(s)	20, 73, 289, 307, 328, 679, 811, 1774, 2020
HspAI	GCGC	6 cut(s)	206, 350, 377, 393, 456, 1164
Kpn2I	TCCGGA	1 cut(s)	1574
KpnI	GGTACC	1 cut(s)	2016
Ksp22I	TGATCA	4 cut(s)	724, 1429, 1981, 2002
LmnI	GCTCC	8 cut(s)	194, 249, 572, 592, 1248, 1498, 1641, 2035
Lsp1109I	GCAGC	7 cut(s)	143, 295, 442, 571, 682, 1084, 1477
LweI	GCATC	8 cut(s)	298, 843, 893, 952, 1397, 1620, 1828, 2067
MaeI	CTAG	1 cut(s)	1245
MaeII	ACGT	4 cut(s)	8, 87, 615, 908
MaeIII	GTNAC	6 cut(s)	20, 83, 120, 272, 408, 526
MbiI	CCGCTC	2 cut(s)	244, 501
MfeI	CAATTG	3 cut(s)	1815, 1964, 2093
MflI	RGATCY	1 cut(s)	1145
MhlI	GDGCHC	6 cut(s)	191, 569, 1084, 1344, 1646, 1930
MlyI	GAGTC	4 cut(s)	52, 334, 424, 692
MmeI	TCCRAC	4 cut(s)	58, 531, 598, 1111
Mph1103I	ATGCAT	2 cut(s)	291, 1659
MroI	TCCGGA	1 cut(s)	1574
MroXI	GAANNNNTTC	1 cut(s)	1182
MseI	TTAA	1 cut(s)	1652
MslI	CAYNNNNRTG	2 cut(s)	806, 1686
MspI	CCGG	5 cut(s)	435, 702, 888, 1575, 2046
MspR9I	CCNGG	4 cut(s)	435, 436, 889, 1253
MunI	CAATTG	3 cut(s)	1815, 1964, 2093
Mva1269I	GAATGC	2 cut(s)	333, 1657
MvaI	CCWGG	1 cut(s)	1253
MvnI	CGCG	6 cut(s)	206, 350, 377, 379, 393, 1164
MwoI	GCNNNNNNNGC	4 cut(s)	286, 317, 1072, 1758
NciI	CCSGG	3 cut(s)	435, 436, 889
NcoI	CCATGG	1 cut(s)	675
NdeI	CATATG	2 cut(s)	1218, 1683
NlaIII	CATG	9 cut(s)	20, 73, 289, 307, 328, 679, 811, 1774, 2020
NmeAIII	GCCGAG	1 cut(s)	706
NmuCI	GTSAC	3 cut(s)	120, 408, 526
NsiI	ATGCAT	2 cut(s)	291, 1659
NspI	RCATGY	1 cut(s)	811
NspV	TTCGAA	1 cut(s)	2052
PaeI	GCATGC	1 cut(s)	811
PaeR7I	CTCGAG	1 cut(s)	1278
PagI	TCATGA	1 cut(s)	69
PcsI	WCGNNNNNNNCGW	2 cut(s)	84, 2058
PctI	GAATGC	2 cut(s)	333, 1657
PdmI	GAANNNNTTC	1 cut(s)	1182
PfeI	GAWTC	5 cut(s)	1205, 1382, 1578, 2049, 2071
PflFI	GACNNNGTC	1 cut(s)	253
PflMI	CCANNNNNTGG	2 cut(s)	304, 1093
Ple19I	CGATCG	1 cut(s)	717
PleI	GAGTC	4 cut(s)	52, 334, 423, 691
PpsI	GAGTC	4 cut(s)	52, 334, 423, 691
Ppu21I	YACGTR	1 cut(s)	88
PpuMI	RGGWCCY	2 cut(s)	265, 444
PshBI	ATTAAT	1 cut(s)	1652
Psp124BI	GAGCTC	3 cut(s)	569, 1084, 1344
Psp1406I	AACGTT	1 cut(s)	615
Psp5II	RGGWCCY	2 cut(s)	265, 444
Psp6I	CCWGG	1 cut(s)	1251
PspFI	CCCAGC	3 cut(s)	164, 222, 426
PspGI	CCWGG	1 cut(s)	1251
PspPI	GGNCC	5 cut(s)	168, 265, 403, 444, 504
PspPPI	RGGWCCY	2 cut(s)	265, 444
PspXI	VCTCGAGB	1 cut(s)	1278
PstI	CTGCAG	1 cut(s)	766
PstNI	CAGNNNCTG	2 cut(s)	61, 406
PsuI	RGATCY	1 cut(s)	1145
PsyI	GACNNNGTC	1 cut(s)	253
PvuI	CGATCG	1 cut(s)	717
RseI	CAYNNNNRTG	2 cut(s)	806, 1686
SacI	GAGCTC	3 cut(s)	569, 1084, 1344
SaqAI	TTAA	1 cut(s)	1652
Sau96I	GGNCC	5 cut(s)	168, 265, 403, 444, 504
ScaI	AGTACT	3 cut(s)	95, 575, 1450
SchI	GAGTC	4 cut(s)	52, 334, 424, 692
ScrFI	CCNGG	4 cut(s)	435, 436, 889, 1253
SduI	GDGCHC	6 cut(s)	191, 569, 1084, 1344, 1646, 1930
SfaNI	GCATC	8 cut(s)	298, 843, 893, 952, 1397, 1620, 1828, 2067
SfcI	CTRYAG	2 cut(s)	747, 762
Sfr274I	CTCGAG	1 cut(s)	1278
SfuI	TTCGAA	1 cut(s)	2052
SinI	GGWCC	3 cut(s)	265, 444, 504
SlaI	CTCGAG	1 cut(s)	1278
SmaI	CCCGGG	1 cut(s)	436
SmiMI	CAYNNNNRTG	2 cut(s)	806, 1686
SmlI	CTYRAG	2 cut(s)	1278, 1698
SmoI	CTYRAG	2 cut(s)	1278, 1698
SnaBI	TACGTA	1 cut(s)	88
SphI	GCATGC	1 cut(s)	811
SspMI	CTAG	1 cut(s)	1245
SstI	GAGCTC	3 cut(s)	569, 1084, 1344
StyD4I	CCNGG	4 cut(s)	433, 434, 887, 1251
StyI	CCWWGG	2 cut(s)	675, 1637
TaaI	ACNGT	7 cut(s)	93, 120, 126, 253, 840, 1092, 1860
TaiI	ACGT	4 cut(s)	11, 90, 618, 911
TatI	WGTACW	4 cut(s)	93, 573, 1314, 1448
TauI	GCSGC	4 cut(s)	51, 211, 701, 989
TfiI	GAWTC	5 cut(s)	1205, 1382, 1578, 2049, 2071
Tru1I	TTAA	1 cut(s)	1652
Tru9I	TTAA	1 cut(s)	1652
TscAI	CASTG	5 cut(s)	417, 766, 919, 1024, 1651
TseFI	GTSAC	3 cut(s)	120, 408, 526
TseI	GCWGC	7 cut(s)	131, 308, 430, 584, 695, 1072, 1490
Tsp45I	GTSAC	3 cut(s)	120, 408, 526
TspDTI	ATGAA	9 cut(s)	5, 86, 313, 800, 1258, 1691, 1742, 1759, 2033
TspGWI	ACGGA	1 cut(s)	440
TspMI	CCCGGG	1 cut(s)	434
TspRI	CASTG	5 cut(s)	417, 766, 919, 1024, 1651
Tth111I	GACNNNGTC	1 cut(s)	253
Van91I	CCANNNNNTGG	2 cut(s)	304, 1093
VpaK11BI	GGWCC	3 cut(s)	265, 444, 504
VspI	ATTAAT	1 cut(s)	1652
XapI	RAATTY	4 cut(s)	777, 978, 1730, 1798
XceI	RCATGY	1 cut(s)	811
XhoI	CTCGAG	1 cut(s)	1278
XmaI	CCCGGG	1 cut(s)	434
XmnI	GAANNNNTTC	1 cut(s)	1182
XspI	CTAG	1 cut(s)	1245
ZrmI	AGTACT	3 cut(s)	95, 575, 1450
Zsp2I	ATGCAT	2 cut(s)	291, 1659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.