Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0004819

Physical Location & Seq

Genomic Coordinates Forward (+)

2795902 .. 2796501

Gene Structure 600 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g03400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGTCGATTTCCACACCCTCAACATCTCCCACAAATATGGTCCGGAACCAGTCCGGATTCACTCTCATTGGGTCATCAGAACTCGATGGGATTACACAAGGCAGTCCAAAGAAGCCTAGGAGCACCGAAATTATGCACTCCTCAAACAGTACTGTCCCATGTATGAATATGGAGTCCCAAGAGGTGAGCAATGAGCAAGTTTCTATGAAATTCGGGGACGAGAGGCAGGGGAGAGATGGCTACTCTTTCATGGGAGGGCAGACTAATTTCATCGGAAATTTTGGGCAATACCCGATTGGCGAAATTGGCAGGTTTGATGCAGACCAATTTACACCAAGGTTCTCAGGCAATGGTGTCTCTCTCACTCTAGGTCTTCCTCACTGTGAAAACCTCTCCTTATCCGGAGCTCACCACCATCAAACTTTTCTCCCAAACCAAAACATTCAGCTGGGGAGAAGAGTAGACATTGGTGAAACAAATGATCGATTTGGCGCCATAAACACTTCAGCTCCTCACTCATCTGCTGCTGCATTCGAAAACATCGACATTCAGAACCGAAAGAGGTTCGTAGCCCAATTGTTACCGGACTTTGTGGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009553 GO:0009559 GO:0009561 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009628 GO:0009639 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009987 GO:0010033 GO:0010197 GO:0010201 GO:0010218 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046982 GO:0046983 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

200

Amino Acids

21.7

Weight (kDa)

5.83

Isoelectric Point (pI)

40.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35940 AT2G35940 AT2G35940
fragaria_vesca	FvH4_6g20350 FvH4_6g20350 FvH4_6g20350 FvH4_6g20350 FvH4_6g20350 FvH4_6g20350 FvH4_6g20350 FvH4_6g20350 FvH4_6g20350
malus_domestica	MD12G1040700.v1.1 MD14G1039700.v1.1
prunus_persica	Prupe.7G094300_v2.0.a1
pyrus_communis	pycom12g03480 pycom14g03390 pycom14g03400
rosa_chinensis	RchiOBHm_Chr3g0475961
rosa_laevigata	RLG00000023795
rosa_multiflora	Rmu_sc0000585.1_g000030
rosa_roxburghii	Rroxscaffold_6G00405580
rosa_rugosa	Rorug03G0152500 Rorug03G0152600 Rorug03G0152700 Rorug03G0152700
rosa_samantha	Rh3AG203400 Rh3BG233000 Rh3CG228700 Rh3DG228900
rosa_wichuraiana	Rw3G018490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	300
AccB1I	GGYRCC	1 cut(s)	491
AccI	GTMKAC	1 cut(s)	462
AccIII	TCCGGA	3 cut(s)	42, 53, 401
AcsI	RAATTY	2 cut(s)	209, 277
AcuI	CTGAAG	1 cut(s)	489
AcyI	GRCGYC	1 cut(s)	492
AfaI	GTAC	1 cut(s)	151
AluBI	AGCT	3 cut(s)	407, 448, 509
AluI	AGCT	3 cut(s)	407, 448, 509
Alw21I	GWGCWC	2 cut(s)	125, 409
Alw26I	GTCTC	1 cut(s)	361
Aor13HI	TCCGGA	3 cut(s)	42, 53, 401
ApeKI	GCWGC	2 cut(s)	524, 527
ApoI	RAATTY	2 cut(s)	209, 277
AspA2I	CCTAGG	1 cut(s)	116
AspLEI	GCGC	1 cut(s)	494
AspS9I	GGNCC	1 cut(s)	40
AsuHPI	GGTGA	3 cut(s)	196, 401, 482
AsuII	TTCGAA	1 cut(s)	534
AvaII	GGWCC	1 cut(s)	40
AvrII	CCTAGG	1 cut(s)	116
BanI	GGYRCC	1 cut(s)	491
BanII	GRGCYC	1 cut(s)	409
BbsI	GAAGAC	1 cut(s)	365
Bbv12I	GWGCWC	2 cut(s)	125, 409
BbvI	GCAGC	2 cut(s)	511, 514
BccI	CCATC	3 cut(s)	80, 230, 423
BcoDI	GTCTC	1 cut(s)	361
BfaI	CTAG	2 cut(s)	117, 368
BfoI	RGCGCY	1 cut(s)	495
BfuAI	ACCTGC	1 cut(s)	300
BisI	GCNGC	2 cut(s)	525, 528
BlnI	CCTAGG	1 cut(s)	116
BlsI	GCNGC	2 cut(s)	526, 529
BmcAI	AGTACT	1 cut(s)	151
Bme18I	GGWCC	1 cut(s)	40
BmgT120I	GGNCC	1 cut(s)	40
BmiI	GGNNCC	2 cut(s)	47, 493
BmsI	GCATC	1 cut(s)	307
BpiI	GAAGAC	1 cut(s)	365
Bpu14I	TTCGAA	1 cut(s)	534
Bsa29I	ATCGAT	1 cut(s)	484
BsaHI	GRCGYC	1 cut(s)	492
BsaJI	CCNNGG	2 cut(s)	116, 335
BsaWI	WCCGGW	4 cut(s)	42, 53, 401, 583
BsaXI	ACNNNNNCTCC	2 cut(s)	493, 523
Bse1I	ACTGG	1 cut(s)	49
Bse3DI	GCAATG	2 cut(s)	196, 355
BseAI	TCCGGA	3 cut(s)	42, 53, 401
BseCI	ATCGAT	1 cut(s)	484
BseDI	CCNNGG	2 cut(s)	116, 335
BseMI	GCAATG	2 cut(s)	196, 355
BseMII	CTCAG	1 cut(s)	357
BseNI	ACTGG	1 cut(s)	49
BseRI	GAGGAG	2 cut(s)	130, 501
BseXI	GCAGC	2 cut(s)	511, 514
BseYI	CCCAGC	1 cut(s)	448
BshNI	GGYRCC	1 cut(s)	491
BshVI	ATCGAT	1 cut(s)	484
BsiHKAI	GWGCWC	2 cut(s)	125, 409
BsiSI	CCGG	4 cut(s)	43, 54, 402, 584
BslFI	GGGAC	3 cut(s)	140, 160, 230
BsmAI	GTCTC	1 cut(s)	361
BsmFI	GGGAC	3 cut(s)	140, 160, 230
BsmI	GAATGC	1 cut(s)	530
Bsp119I	TTCGAA	1 cut(s)	534
Bsp1286I	GDGCHC	2 cut(s)	125, 409
Bsp13I	TCCGGA	3 cut(s)	42, 53, 401
Bsp143I	GATC	1 cut(s)	481
BspCNI	CTCAG	1 cut(s)	356
BspDI	ATCGAT	1 cut(s)	484
BspEI	TCCGGA	3 cut(s)	42, 53, 401
BspLI	GGNNCC	2 cut(s)	47, 493
BspMI	ACCTGC	1 cut(s)	300
BspT104I	TTCGAA	1 cut(s)	534
BspT107I	GGYRCC	1 cut(s)	491
BsrDI	GCAATG	2 cut(s)	196, 355
BsrI	ACTGG	1 cut(s)	49
BssECI	CCNNGG	2 cut(s)	116, 335
BssMI	GATC	1 cut(s)	481
BssNI	GRCGYC	1 cut(s)	492
BssT1I	CCWWGG	2 cut(s)	116, 335
Bst4CI	ACNGT	3 cut(s)	149, 154, 383
Bst6I	CTCTTC	1 cut(s)	451
BstACI	GRCGYC	1 cut(s)	492
BstBI	TTCGAA	1 cut(s)	534
BstDEI	CTNAG	1 cut(s)	343
BstH2I	RGCGCY	1 cut(s)	495
BstHHI	GCGC	1 cut(s)	494
BstKTI	GATC	1 cut(s)	484
BstMAI	GTCTC	1 cut(s)	361
BstMBI	GATC	1 cut(s)	481
BstMWI	GCNNNNNNNGC	1 cut(s)	306
BstV1I	GCAGC	2 cut(s)	511, 514
BstV2I	GAAGAC	1 cut(s)	365
BstXI	CCANNNNNNTGG	1 cut(s)	37
Bsu15I	ATCGAT	1 cut(s)	484
BsuTUI	ATCGAT	1 cut(s)	484
BtsIMutI	CAGTG	1 cut(s)	379
BveI	ACCTGC	1 cut(s)	300
CfoI	GCGC	1 cut(s)	494
Cfr13I	GGNCC	1 cut(s)	40
ClaI	ATCGAT	1 cut(s)	484
Csp6I	GTAC	1 cut(s)	150
CviAII	CATG	2 cut(s)	159, 250
CviJI	RGCY	6 cut(s)	115, 240, 407, 448, 509, 572
CviKI_1	RGCY	6 cut(s)	115, 240, 407, 448, 509, 572
CviQI	GTAC	1 cut(s)	150
DdeI	CTNAG	1 cut(s)	343
DinI	GGCGCC	1 cut(s)	493
DpnI	GATC	1 cut(s)	483
DpnII	GATC	1 cut(s)	481
Eam1104I	CTCTTC	1 cut(s)	451
EarI	CTCTTC	1 cut(s)	451
Ecl136II	GAGCTC	1 cut(s)	407
Eco130I	CCWWGG	2 cut(s)	116, 335
Eco24I	GRGCYC	1 cut(s)	409
Eco47I	GGWCC	1 cut(s)	40
Eco53kI	GAGCTC	1 cut(s)	407
Eco57I	CTGAAG	1 cut(s)	489
EcoICRI	GAGCTC	1 cut(s)	407
EcoT14I	CCWWGG	2 cut(s)	116, 335
EcoT38I	GRGCYC	1 cut(s)	409
EgeI	GGCGCC	1 cut(s)	493
EheI	GGCGCC	1 cut(s)	493
ErhI	CCWWGG	2 cut(s)	116, 335
FaeI	CATG	2 cut(s)	162, 253
FaiI	YATR	8 cut(s)	38, 134, 160, 164, 170, 206, 251, 497
FaqI	GGGAC	3 cut(s)	140, 160, 230
FatI	CATG	2 cut(s)	158, 249
FblI	GTMKAC	1 cut(s)	462
Fnu4HI	GCNGC	2 cut(s)	525, 528
FriOI	GRGCYC	1 cut(s)	409
Fsp4HI	GCNGC	2 cut(s)	525, 528
FspBI	CTAG	2 cut(s)	117, 368
GlaI	GCGC	1 cut(s)	493
GluI	GCNGC	2 cut(s)	525, 528
GsaI	CCCAGC	1 cut(s)	452
HaeII	RGCGCY	1 cut(s)	495
HapII	CCGG	4 cut(s)	43, 54, 402, 584
HhaI	GCGC	1 cut(s)	494
Hin1I	GRCGYC	1 cut(s)	492
Hin1II	CATG	2 cut(s)	162, 253
Hin6I	GCGC	1 cut(s)	492
HinP1I	GCGC	1 cut(s)	492
HinfI	GANTC	2 cut(s)	57, 173
HpaII	CCGG	4 cut(s)	43, 54, 402, 584
HphI	GGTGA	3 cut(s)	196, 401, 482
Hpy166II	GTNNAC	1 cut(s)	463
Hpy188I	TCNGA	3 cut(s)	79, 275, 552
Hpy188III	TCNNGA	3 cut(s)	43, 54, 402
Hpy8I	GTNNAC	1 cut(s)	463
HpyCH4III	ACNGT	3 cut(s)	149, 154, 383
HpyCH4V	TGCA	3 cut(s)	136, 320, 530
HpyF10VI	GCNNNNNNNGC	1 cut(s)	306
HpyF3I	CTNAG	1 cut(s)	343
Hsp92I	GRCGYC	1 cut(s)	492
Hsp92II	CATG	2 cut(s)	162, 253
HspAI	GCGC	1 cut(s)	492
KasI	GGCGCC	1 cut(s)	491
Kpn2I	TCCGGA	3 cut(s)	42, 53, 401
Kzo9I	GATC	1 cut(s)	481
LmnI	GCTCC	3 cut(s)	120, 404, 514
LpnPI	CCDG	8 cut(s)	56, 62, 67, 212, 295, 330, 415, 434
Lsp1109I	GCAGC	2 cut(s)	511, 514
LweI	GCATC	1 cut(s)	307
MaeI	CTAG	2 cut(s)	117, 368
MaeIII	GTNAC	1 cut(s)	579
MalI	GATC	1 cut(s)	483
MboI	GATC	1 cut(s)	481
MboII	GAAGA	2 cut(s)	365, 468
MfeI	CAATTG	1 cut(s)	575
MhlI	GDGCHC	2 cut(s)	125, 409
MluCI	AATT	7 cut(s)	129, 209, 265, 277, 303, 326, 575
Mly113I	GGCGCC	1 cut(s)	492
MlyI	GAGTC	1 cut(s)	182
MnlI	CCTC	9 cut(s)	28, 151, 175, 216, 248, 387, 401, 522, 555
MroI	TCCGGA	3 cut(s)	42, 53, 401
MslI	CAYNNNNRTG	1 cut(s)	35
MspA1I	CMGCKG	1 cut(s)	448
MspI	CCGG	4 cut(s)	43, 54, 402, 584
MunI	CAATTG	1 cut(s)	575
Mva1269I	GAATGC	1 cut(s)	530
MwoI	GCNNNNNNNGC	1 cut(s)	306
NarI	GGCGCC	1 cut(s)	492
NdeII	GATC	1 cut(s)	481
NlaIII	CATG	2 cut(s)	162, 253
NlaIV	GGNNCC	2 cut(s)	47, 493
NspV	TTCGAA	1 cut(s)	534
PcsI	WCGNNNNNNNCGW	1 cut(s)	540
PctI	GAATGC	1 cut(s)	530
PfeI	GAWTC	1 cut(s)	57
PkrI	GCNGC	2 cut(s)	526, 529
PleI	GAGTC	1 cut(s)	181
PluTI	GGCGCC	1 cut(s)	495
PpsI	GAGTC	1 cut(s)	181
Psp124BI	GAGCTC	1 cut(s)	409
PspFI	CCCAGC	1 cut(s)	448
PspN4I	GGNNCC	2 cut(s)	47, 493
PspPI	GGNCC	1 cut(s)	40
PvuII	CAGCTG	1 cut(s)	448
RsaI	GTAC	1 cut(s)	151
RsaNI	GTAC	1 cut(s)	150
RseI	CAYNNNNRTG	1 cut(s)	35
SacI	GAGCTC	1 cut(s)	409
SatI	GCNGC	2 cut(s)	525, 528
Sau3AI	GATC	1 cut(s)	481
Sau96I	GGNCC	1 cut(s)	40
ScaI	AGTACT	1 cut(s)	151
SchI	GAGTC	1 cut(s)	182
SduI	GDGCHC	2 cut(s)	125, 409
SetI	ASST	9 cut(s)	186, 314, 341, 373, 393, 409, 450, 511, 566
SfaNI	GCATC	1 cut(s)	307
SfoI	GGCGCC	1 cut(s)	493
SfuI	TTCGAA	1 cut(s)	534
SinI	GGWCC	1 cut(s)	40
SmiMI	CAYNNNNRTG	1 cut(s)	35
Sse9I	AATT	7 cut(s)	129, 209, 265, 277, 303, 326, 575
SspDI	GGCGCC	1 cut(s)	491
SspMI	CTAG	2 cut(s)	117, 368
SstI	GAGCTC	1 cut(s)	409
StyI	CCWWGG	2 cut(s)	116, 335
TaaI	ACNGT	3 cut(s)	149, 154, 383
TaqI	TCGA	5 cut(s)	5, 84, 484, 534, 543
TasI	AATT	7 cut(s)	129, 209, 265, 277, 303, 326, 575
TatI	WGTACW	1 cut(s)	149
TfiI	GAWTC	1 cut(s)	57
TscAI	CASTG	1 cut(s)	386
TseI	GCWGC	2 cut(s)	524, 527
TspDTI	ATGAA	4 cut(s)	179, 221, 238, 259
TspRI	CASTG	1 cut(s)	386
VpaK11BI	GGWCC	1 cut(s)	40
XapI	RAATTY	2 cut(s)	209, 277
XmaJI	CCTAGG	1 cut(s)	116
XmiI	GTMKAC	1 cut(s)	462
XspI	CTAG	2 cut(s)	117, 368
ZrmI	AGTACT	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.