Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0004819

Physical Location & Seq

Genomic Coordinates Forward (+)

20638366 .. 20641043

Gene Structure 2678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G018490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2040 bp

ATGGCGACGTACTTTCATGGTAACTCGGAAATCCAACCCCCCGACGGCGGCTTGCAGACTCTGGTTCTCATGAACCACGGCGGTTACGTCCAGTACTCGGATTCTACTCAACAGCAACAGTCACCGTCGGCAGCCACTAACCAGCTTGTCTTCCTCAACTCTGCTGGGGCCAACCCACTCGCTCAAGGCTCCACTCTCCCCCACGCGCCGCCCTCCCACACCCAGCAATTTGTCGGCATACCGCTCCCGACCGTGTCCTCTCAGGACCCCAGTAACTCGCAGTCCATGCATCCCCACCACGACATGGCTGCTCTCCACGCCTTCATGCCTCGCATTCAGACTCAGTACGCGCTCTGGAACTCAATCGACCCTTCCGCGCGTGAAACCCCACGCGCCCAGCAGGGTCTGTCCCTGAGTCTGTCGTCCCAGCAGCCCGGGTTCGGGTCCTTCCGTGGCGCTGATCGGGAAGTCCCGACTGGTGAGGATATCCGGGTTTCGAGCGGTTCCAACTCTTCGCTTCGGAGCGTGTTGCTGAGCTCCAAGTACTTGAAGGCTGCACAGGAGCTTCTTGATGAGGTTGTGAACGTGGGAAATGGGATGAGGTCCGACTTGCCTAAGAAGGGTAATGGGAACCAGAGTAAGGCCATGGCCGAGTCTTCCATGGCGGCCGCCGGAGATGGTTCGATCGGCGGTGATCAAGATAGTGGGAAGCGTGCTATGAAGAAGGGAAAGCTCATCAGCATGCTTGATGAGGTGGATCAAAGGTACAGACAGTACCATCGCCAGATGCAAATGGTAATTTCGTCGTTCGAGCAAGCATCCGGGATTGGTTCAGCAAGAACATACACTGCTCTTGCACTTCAAACAATCTCAAAGCAGTTCAGGTGCTTGAAAGATGCAATAACAAACCAAATTCGAGCCGCCAACAAGAGCTTAGGCGAAGAGGATTGCAGTGGGGGGAAGATTGAAGGTTCAAGGCTCAAATATGTTGACCACCAGCTCAGGCAGCAAAGAGCTCTCCAACAGTTGGGAATGATCCAGCACAATGCTTGGAGACCCCAAAGAGGATTGCCCGAAAGATCTGTTTCTGTTCTTCGCGCTTGGCTTTTCGAACATTTTCTGCACCCCTATCCAAAGGATTCAGACAAGCACATGCTTGCAAAACAAACAGGGCTTACTAGGAGCCAGGTTTCAAATTGGTTTATAAATGCTCGAGTTCGTCTGTGGAAGCCAATGGTGGAAGAAATGTACTTGGAGGAAATCAAGGAGAATGAGCTCAATGGATCATCTGAGAAGATGAGCAAGAGCAATGAGGATTCTGCATCAAAGTCCACACCTCCACAAGAGAGAAGTCCTGCTACTGATCAGAACCAAACCAATGGTACTTTCAATTCCAAACAAGAGACTTCCACAAATCATATTGCTGCTCCTCCATCAATGTCAATGTCAATGTCCTCAGCTTCAACATCTCCCACAAACATTGTTCGGAACCAGTCCGGATTCAGCCTCATCGGGTCATCAGAATTGGATGGCATCACACAAGGTAGTCCAAAGAAGCCAAGGAGCACTGAATTAATGCATTCCCCAAATAGTATGATGAACCATATGGATGTCAAGCCTCAAGAGGTGAGCAATGAGCAAGTTTCTATGAAATTTGGGGATGAGAGGCAGAGCAGAGATGGCTACTCATTCATGGGAGGACAGACCAATTTTATTGGGAATTTCGGGCAATACCCAATTGGTGAAATTGGGAGGTTCGATGCAGACCAATTCACACCACGGTTCTCAGGCAATGGTGTCTCTCTCACTCTCGGTCTTCCTCATTGTGAAAACCTCTCCTTGTCTGGTGCCCATCACCAAACTTTTCTCCCAAACCAAAACATTCAATTGGGGAGAAGAGTTGATCACATTGGAGAACCAAATGATCAGTTTGGTACCATGAACAGTTCAGCTCCTCACTCTTCTGCCGGATTTGAAAGCATCGACATTCAGAATCGAAAGAGGTTCGTAGCACAATTGTTGCCAGACTTTGTGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009553 GO:0009559 GO:0009561 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009628 GO:0009639 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009987 GO:0010033 GO:0010197 GO:0010201 GO:0010218 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046982 GO:0046983 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

679

Amino Acids

74.55

Weight (kDa)

7.39

Isoelectric Point (pI)

50.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POX	PF07526	176 - 302	8.9e-43	Associated with HOX
Homeobox_KN	PF05920	368 - 407	1.8e-19	Homeobox KN domain
Homeodomain	PF00046	375 - 407	1.1e-06	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35940 AT2G35940 AT2G35940
fragaria_vesca	FvH4_6g20350 FvH4_6g20350 FvH4_6g20350 FvH4_6g20350 FvH4_6g20350 FvH4_6g20350 FvH4_6g20350 FvH4_6g20350 FvH4_6g20350
malus_domestica	MD12G1040700.v1.1 MD14G1039700.v1.1
prunus_persica	Prupe.7G094300_v2.0.a1
pyrus_communis	pycom12g03480 pycom14g03390 pycom14g03400
rosa_chinensis	RchiOBHm_Chr3g0475961
rosa_laevigata	RLG00000023795
rosa_multiflora	Rmu_sc0000585.1_g000030
rosa_roxburghii	Rroxscaffold_6G00405580
rosa_rugosa	Rorug03G0152500 Rorug03G0152600 Rorug03G0152700 Rorug03G0152700
rosa_samantha	Rh3AG203400 Rh3BG233000 Rh3CG228700 Rh3DG228900
rosa_wichuraiana	Rw3G018490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1205
Acc65I	GGTACC	1 cut(s)	1934
AccB1I	GGYRCC	2 cut(s)	1847, 1934
AccB7I	CCANNNNNTGG	2 cut(s)	304, 1027
AccBSI	CCGCTC	2 cut(s)	244, 501
AccII	CGCG	6 cut(s)	206, 350, 377, 379, 393, 1098
AccIII	TCCGGA	1 cut(s)	1496
AclWI	GGATC	3 cut(s)	765, 1030, 1291
AcoI	YGGCCR	2 cut(s)	648, 666
AcsI	RAATTY	3 cut(s)	912, 1652, 1720
AfaI	GTAC	9 cut(s)	11, 95, 347, 545, 767, 776, 1250, 1384, 1936
AjnI	CCWGG	1 cut(s)	1185
AjuI	GAANNNNNNNTTGG	2 cut(s)	1370, 1402
Alw21I	GWGCWC	4 cut(s)	539, 1018, 1278, 1568
Alw26I	GTCTC	3 cut(s)	1048, 1397, 1804
AlwI	GGATC	3 cut(s)	765, 1030, 1291
AlwNI	CAGNNNCTG	2 cut(s)	61, 406
Ama87I	CYCGRG	2 cut(s)	434, 1212
Aor13HI	TCCGGA	1 cut(s)	1496
AoxI	GGCC	5 cut(s)	168, 642, 648, 666, 2034
ApeKI	GCWGC	6 cut(s)	131, 308, 430, 554, 1006, 1424
ApoI	RAATTY	3 cut(s)	912, 1652, 1720
AseI	ATTAAT	1 cut(s)	1574
Asp700I	GAANNNNTTC	1 cut(s)	1116
Asp718I	GGTACC	1 cut(s)	1934
AspLEI	GCGC	6 cut(s)	208, 352, 379, 395, 458, 1100
AspS9I	GGNCC	4 cut(s)	168, 265, 444, 603
AsuC2I	CCSGG	4 cut(s)	435, 436, 491, 823
AsuHPI	GGTGA	6 cut(s)	114, 491, 704, 1639, 1754, 1847
AsuII	TTCGAA	1 cut(s)	1110
AvaI	CYCGRG	2 cut(s)	434, 1212
AvaII	GGWCC	3 cut(s)	265, 444, 603
BaeGI	GKGCMC	1 cut(s)	1852
BanI	GGYRCC	2 cut(s)	1847, 1934
BanII	GRGCYC	3 cut(s)	539, 1018, 1278
BarI	GAAGNNNNNNTAC	2 cut(s)	1342, 1374
BbsI	GAAGAC	3 cut(s)	142, 648, 1808
Bbv12I	GWGCWC	4 cut(s)	539, 1018, 1278, 1568
BbvCI	CCTCAGC	1 cut(s)	1456
BbvI	GCAGC	6 cut(s)	143, 295, 442, 541, 1018, 1411
BccI	CCATC	6 cut(s)	671, 786, 1441, 1523, 1673, 1860
BceAI	ACGGC	2 cut(s)	61, 94
BcgI	CGANNNNNNTGC	2 cut(s)	290, 324
BciT130I	CCWGG	1 cut(s)	1187
BclI	TGATCA	4 cut(s)	694, 1363, 1903, 1924
BcnI	CCSGG	4 cut(s)	435, 436, 491, 823
BcoDI	GTCTC	3 cut(s)	1048, 1397, 1804
BfaI	CTAG	1 cut(s)	1179
BfoI	RGCGCY	1 cut(s)	459
BglII	AGATCT	1 cut(s)	1079
BlpI	GCTNAGC	1 cut(s)	533
BmcAI	AGTACT	2 cut(s)	95, 545
Bme1390I	CCNGG	5 cut(s)	435, 436, 491, 823, 1187
Bme18I	GGWCC	3 cut(s)	265, 444, 603
BmeT110I	CYCGRG	2 cut(s)	434, 1212
BmgT120I	GGNCC	4 cut(s)	168, 265, 444, 603
BmrFI	CCNGG	5 cut(s)	435, 436, 491, 823, 1187
BmrI	ACTGGG	1 cut(s)	264
BmsI	GCATC	8 cut(s)	298, 777, 827, 886, 1331, 1542, 1750, 1989
BmuI	ACTGGG	1 cut(s)	264
BpiI	GAAGAC	3 cut(s)	142, 648, 1808
Bpu10I	CCTNAGC	3 cut(s)	934, 1001, 1456
Bpu1102I	GCTNAGC	1 cut(s)	533
Bpu14I	TTCGAA	1 cut(s)	1110
BpuEI	CTTGAG	2 cut(s)	168, 1605
BpuMI	CCSGG	4 cut(s)	435, 436, 491, 823
BsaI	GGTCTC	1 cut(s)	1048
BsaJI	CCNNGG	7 cut(s)	76, 434, 451, 645, 660, 1559, 1778
BsaWI	WCCGGW	1 cut(s)	1496
Bse1I	ACTGG	4 cut(s)	91, 270, 481, 1492
Bse3DI	GCAATG	3 cut(s)	1315, 1639, 1798
BseAI	TCCGGA	1 cut(s)	1496
BseBI	CCWGG	1 cut(s)	1187
BseDI	CCNNGG	7 cut(s)	76, 434, 451, 645, 660, 1559, 1778
BseGI	GGATG	6 cut(s)	289, 603, 818, 1534, 1615, 1666
BseMI	GCAATG	3 cut(s)	1315, 1639, 1798
BseMII	CTCAG	8 cut(s)	275, 356, 404, 524, 1015, 1281, 1470, 1800
BseNI	ACTGG	4 cut(s)	91, 270, 481, 1492
BseRI	GAGGAG	2 cut(s)	1419, 1944
BseSI	GKGCMC	1 cut(s)	1852
BseX3I	CGGCCG	1 cut(s)	666
BseXI	GCAGC	6 cut(s)	143, 295, 442, 541, 1018, 1411
BseYI	CCCAGC	4 cut(s)	164, 222, 396, 426
BsgI	GTGCAG	2 cut(s)	540, 1106
Bsh1236I	CGCG	6 cut(s)	206, 350, 377, 379, 393, 1098
Bsh1285I	CGRYCG	3 cut(s)	252, 669, 687
BshFI	GGCC	5 cut(s)	170, 644, 650, 668, 2036
BshNI	GGYRCC	2 cut(s)	1847, 1934
BsiEI	CGRYCG	3 cut(s)	252, 669, 687
BsiHKAI	GWGCWC	4 cut(s)	539, 1018, 1278, 1568
BsiHKCI	CYCGRG	2 cut(s)	434, 1212
BsiSI	CCGG	6 cut(s)	435, 490, 672, 822, 1497, 1968
BslFI	GGGAC	3 cut(s)	394, 409, 455
BsmAI	GTCTC	3 cut(s)	1048, 1397, 1804
BsmFI	GGGAC	3 cut(s)	394, 409, 455
BsmI	GAATGC	2 cut(s)	333, 1579
BsnI	GGCC	5 cut(s)	170, 644, 650, 668, 2036
Bso31I	GGTCTC	1 cut(s)	1048
BsoBI	CYCGRG	2 cut(s)	434, 1212
Bsp119I	TTCGAA	1 cut(s)	1110
Bsp1286I	GDGCHC	5 cut(s)	539, 1018, 1278, 1568, 1852
Bsp13I	TCCGGA	1 cut(s)	1496
Bsp1720I	GCTNAGC	1 cut(s)	533
Bsp19I	CCATGG	2 cut(s)	645, 660
BspANI	GGCC	5 cut(s)	170, 644, 650, 668, 2036
BspCNI	CTCAG	8 cut(s)	274, 355, 405, 525, 1014, 1282, 1469, 1799
BspEI	TCCGGA	1 cut(s)	1496
BspFNI	CGCG	6 cut(s)	206, 350, 377, 379, 393, 1098
BspHI	TCATGA	1 cut(s)	69
BspPI	GGATC	3 cut(s)	765, 1030, 1291
BspT104I	TTCGAA	1 cut(s)	1110
BspT107I	GGYRCC	2 cut(s)	1847, 1934
BspTNI	GGTCTC	1 cut(s)	1048
BsrBI	CCGCTC	2 cut(s)	244, 501
BsrDI	GCAATG	3 cut(s)	1315, 1639, 1798
BsrI	ACTGG	4 cut(s)	91, 270, 481, 1492
BssECI	CCNNGG	7 cut(s)	76, 434, 451, 645, 660, 1559, 1778
BssT1I	CCWWGG	3 cut(s)	645, 660, 1559
Bst2UI	CCWGG	1 cut(s)	1187
Bst4CI	ACNGT	7 cut(s)	120, 126, 253, 774, 1026, 1782, 1946
Bst6I	CTCTTC	4 cut(s)	517, 936, 1891, 1966
BstAPI	GCANNNNNTGC	1 cut(s)	286
BstBI	TTCGAA	1 cut(s)	1110
BstC8I	GCNNGC	5 cut(s)	53, 714, 743, 816, 1158
BstDSI	CCRYGG	5 cut(s)	76, 451, 645, 660, 1778
BstF5I	GGATG	6 cut(s)	289, 603, 818, 1534, 1615, 1666
BstFNI	CGCG	6 cut(s)	206, 350, 377, 379, 393, 1098
BstH2I	RGCGCY	1 cut(s)	459
BstHHI	GCGC	6 cut(s)	208, 352, 379, 395, 458, 1100
BstMAI	GTCTC	3 cut(s)	1048, 1397, 1804
BstMCI	CGRYCG	3 cut(s)	252, 669, 687
BstMWI	GCNNNNNNNGC	4 cut(s)	286, 317, 1006, 1680
BstNI	CCWGG	1 cut(s)	1187
BstNSI	RCATGY	2 cut(s)	745, 1156
BstSCI	CCNGG	5 cut(s)	433, 434, 489, 821, 1185
BstSLI	GKGCMC	1 cut(s)	1852
BstUI	CGCG	6 cut(s)	206, 350, 377, 379, 393, 1098
BstV1I	GCAGC	6 cut(s)	143, 295, 442, 541, 1018, 1411
BstV2I	GAAGAC	3 cut(s)	142, 648, 1808
BstX2I	RGATCY	1 cut(s)	1079
BstXI	CCANNNNNNTGG	1 cut(s)	1379
BstYI	RGATCY	1 cut(s)	1079
BstZI	CGGCCG	1 cut(s)	666
BsuRI	GGCC	5 cut(s)	170, 644, 650, 668, 2036
BtgI	CCRYGG	5 cut(s)	76, 451, 645, 660, 1778
BtgZI	GCGATG	1 cut(s)	764
BtsCI	GGATG	6 cut(s)	289, 603, 818, 1534, 1615, 1666
BtsI	GCAGTG	2 cut(s)	846, 958
BtsIMutI	CAGTG	3 cut(s)	846, 958, 1566
Cac8I	GCNNGC	5 cut(s)	53, 714, 743, 816, 1158
CaiI	CAGNNNCTG	2 cut(s)	61, 406
CciI	TCATGA	1 cut(s)	69
CciNI	GCGGCCGC	1 cut(s)	666
CfoI	GCGC	6 cut(s)	208, 352, 379, 395, 458, 1100
Cfr13I	GGNCC	4 cut(s)	168, 265, 444, 603
Cfr9I	CCCGGG	1 cut(s)	434
Csp6I	GTAC	9 cut(s)	10, 94, 346, 544, 766, 775, 1249, 1383, 1935
CspCI	CAANNNNNGTGG	2 cut(s)	1462, 1497
CviQI	GTAC	9 cut(s)	10, 94, 346, 544, 766, 775, 1249, 1383, 1935
EaeI	YGGCCR	2 cut(s)	648, 666
EagI	CGGCCG	1 cut(s)	666
Eam1104I	CTCTTC	4 cut(s)	517, 936, 1891, 1966
EarI	CTCTTC	4 cut(s)	517, 936, 1891, 1966
Ecl136II	GAGCTC	3 cut(s)	537, 1016, 1276
EclXI	CGGCCG	1 cut(s)	666
Eco130I	CCWWGG	3 cut(s)	645, 660, 1559
Eco24I	GRGCYC	3 cut(s)	539, 1018, 1278
Eco31I	GGTCTC	1 cut(s)	1048
Eco32I	GATATC	1 cut(s)	487
Eco47I	GGWCC	3 cut(s)	265, 444, 603
Eco52I	CGGCCG	1 cut(s)	666
Eco53kI	GAGCTC	3 cut(s)	537, 1016, 1276
Eco88I	CYCGRG	2 cut(s)	434, 1212
EcoICRI	GAGCTC	3 cut(s)	537, 1016, 1276
EcoO109I	RGGNCCY	2 cut(s)	265, 444
EcoRII	CCWGG	1 cut(s)	1185
EcoRV	GATATC	1 cut(s)	487
EcoT14I	CCWWGG	3 cut(s)	645, 660, 1559
EcoT22I	ATGCAT	2 cut(s)	291, 1581
EcoT38I	GRGCYC	3 cut(s)	539, 1018, 1278
ErhI	CCWWGG	3 cut(s)	645, 660, 1559
FaqI	GGGAC	3 cut(s)	394, 409, 455
FauNDI	CATATG	1 cut(s)	1605
FbaI	TGATCA	4 cut(s)	694, 1363, 1903, 1924
FokI	GGATG	6 cut(s)	276, 610, 805, 1541, 1622, 1673
FriOI	GRGCYC	3 cut(s)	539, 1018, 1278
FspBI	CTAG	1 cut(s)	1179
GlaI	GCGC	6 cut(s)	207, 351, 378, 394, 457, 1099
GsaI	CCCAGC	4 cut(s)	168, 226, 400, 430
HaeII	RGCGCY	1 cut(s)	459
HaeIII	GGCC	5 cut(s)	170, 644, 650, 668, 2036
HapII	CCGG	6 cut(s)	435, 490, 672, 822, 1497, 1968
HhaI	GCGC	6 cut(s)	208, 352, 379, 395, 458, 1100
Hin6I	GCGC	6 cut(s)	206, 350, 377, 393, 456, 1098
HinP1I	GCGC	6 cut(s)	206, 350, 377, 393, 456, 1098
HincII	GTYRAC	1 cut(s)	991
HindII	GTYRAC	1 cut(s)	991
HinfI	GANTC	9 cut(s)	58, 101, 340, 415, 653, 1139, 1316, 1500, 1993
HpaII	CCGG	6 cut(s)	435, 490, 672, 822, 1497, 1968
HphI	GGTGA	6 cut(s)	114, 491, 704, 1639, 1754, 1847
Hpy166II	GTNNAC	3 cut(s)	583, 991, 1332
Hpy8I	GTNNAC	3 cut(s)	583, 991, 1332
Hpy99I	CGWCG	4 cut(s)	10, 47, 130, 808
HpyAV	CCTTC	7 cut(s)	331, 381, 457, 544, 613, 718, 962
HpyCH4III	ACNGT	7 cut(s)	120, 126, 253, 774, 1026, 1782, 1946
HpyCH4IV	ACGT	3 cut(s)	8, 87, 585
HpyF10VI	GCNNNNNNNGC	4 cut(s)	286, 317, 1006, 1680
HpySE526I	ACGT	3 cut(s)	8, 87, 585
HspAI	GCGC	6 cut(s)	206, 350, 377, 393, 456, 1098
Kpn2I	TCCGGA	1 cut(s)	1496
KpnI	GGTACC	1 cut(s)	1938
Ksp22I	TGATCA	4 cut(s)	694, 1363, 1903, 1924
LmnI	GCTCC	9 cut(s)	194, 249, 522, 542, 562, 1182, 1432, 1563, 1957
Lsp1109I	GCAGC	6 cut(s)	143, 295, 442, 541, 1018, 1411
LweI	GCATC	8 cut(s)	298, 777, 827, 886, 1331, 1542, 1750, 1989
MaeI	CTAG	1 cut(s)	1179
MaeII	ACGT	3 cut(s)	8, 87, 585
MaeIII	GTNAC	4 cut(s)	20, 83, 120, 272
MbiI	CCGCTC	2 cut(s)	244, 501
MfeI	CAATTG	3 cut(s)	1737, 1886, 2015
MflI	RGATCY	1 cut(s)	1079
MhlI	GDGCHC	5 cut(s)	539, 1018, 1278, 1568, 1852
MlyI	GAGTC	4 cut(s)	52, 334, 424, 662
MmeI	TCCRAC	4 cut(s)	58, 531, 630, 1045
Mph1103I	ATGCAT	2 cut(s)	291, 1581
MroI	TCCGGA	1 cut(s)	1496
MroXI	GAANNNNTTC	1 cut(s)	1116
MseI	TTAA	1 cut(s)	1574
MslI	CAYNNNNRTG	2 cut(s)	740, 1608
MspI	CCGG	6 cut(s)	435, 490, 672, 822, 1497, 1968
MspR9I	CCNGG	5 cut(s)	435, 436, 491, 823, 1187
MunI	CAATTG	3 cut(s)	1737, 1886, 2015
Mva1269I	GAATGC	2 cut(s)	333, 1579
MvaI	CCWGG	1 cut(s)	1187
MvnI	CGCG	6 cut(s)	206, 350, 377, 379, 393, 1098
MwoI	GCNNNNNNNGC	4 cut(s)	286, 317, 1006, 1680
NciI	CCSGG	4 cut(s)	435, 436, 491, 823
NcoI	CCATGG	2 cut(s)	645, 660
NdeI	CATATG	1 cut(s)	1605
NmeAIII	GCCGAG	1 cut(s)	676
NmuCI	GTSAC	1 cut(s)	120
NotI	GCGGCCGC	1 cut(s)	666
NsiI	ATGCAT	2 cut(s)	291, 1581
NspI	RCATGY	2 cut(s)	745, 1156
NspV	TTCGAA	1 cut(s)	1110
PaeI	GCATGC	1 cut(s)	745
PaeR7I	CTCGAG	1 cut(s)	1212
PagI	TCATGA	1 cut(s)	69
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PctI	GAATGC	2 cut(s)	333, 1579
PdmI	GAANNNNTTC	1 cut(s)	1116
PfeI	GAWTC	5 cut(s)	101, 1139, 1316, 1500, 1993
PflFI	GACNNNGTC	1 cut(s)	253
PflMI	CCANNNNNTGG	2 cut(s)	304, 1027
PfoI	TCCNGGA	1 cut(s)	821
Ple19I	CGATCG	1 cut(s)	687
PleI	GAGTC	4 cut(s)	52, 334, 423, 661
PpsI	GAGTC	4 cut(s)	52, 334, 423, 661
PpuMI	RGGWCCY	2 cut(s)	265, 444
PshBI	ATTAAT	1 cut(s)	1574
PsiI	TTATAA	1 cut(s)	1205
Psp124BI	GAGCTC	3 cut(s)	539, 1018, 1278
Psp5II	RGGWCCY	2 cut(s)	265, 444
Psp6I	CCWGG	1 cut(s)	1185
PspFI	CCCAGC	4 cut(s)	164, 222, 396, 426
PspGI	CCWGG	1 cut(s)	1185
PspPI	GGNCC	4 cut(s)	168, 265, 444, 603
PspPPI	RGGWCCY	2 cut(s)	265, 444
PspXI	VCTCGAGB	1 cut(s)	1212
PstNI	CAGNNNCTG	2 cut(s)	61, 406
PsuI	RGATCY	1 cut(s)	1079
PsyI	GACNNNGTC	1 cut(s)	253
PvuI	CGATCG	1 cut(s)	687
RsaI	GTAC	9 cut(s)	11, 95, 347, 545, 767, 776, 1250, 1384, 1936
RsaNI	GTAC	9 cut(s)	10, 94, 346, 544, 766, 775, 1249, 1383, 1935
RseI	CAYNNNNRTG	2 cut(s)	740, 1608
SacI	GAGCTC	3 cut(s)	539, 1018, 1278
SaqAI	TTAA	1 cut(s)	1574
Sau96I	GGNCC	4 cut(s)	168, 265, 444, 603
ScaI	AGTACT	2 cut(s)	95, 545
SchI	GAGTC	4 cut(s)	52, 334, 424, 662
ScrFI	CCNGG	5 cut(s)	435, 436, 491, 823, 1187
SduI	GDGCHC	5 cut(s)	539, 1018, 1278, 1568, 1852
SfaNI	GCATC	8 cut(s)	298, 777, 827, 886, 1331, 1542, 1750, 1989
Sfr274I	CTCGAG	1 cut(s)	1212
SfuI	TTCGAA	1 cut(s)	1110
SinI	GGWCC	3 cut(s)	265, 444, 603
SlaI	CTCGAG	1 cut(s)	1212
SmaI	CCCGGG	1 cut(s)	436
SmiMI	CAYNNNNRTG	2 cut(s)	740, 1608
SmlI	CTYRAG	3 cut(s)	183, 1212, 1620
SmoI	CTYRAG	3 cut(s)	183, 1212, 1620
SphI	GCATGC	1 cut(s)	745
SspMI	CTAG	1 cut(s)	1179
SstI	GAGCTC	3 cut(s)	539, 1018, 1278
StyD4I	CCNGG	5 cut(s)	433, 434, 489, 821, 1185
StyI	CCWWGG	3 cut(s)	645, 660, 1559
TaaI	ACNGT	7 cut(s)	120, 126, 253, 774, 1026, 1782, 1946
TaiI	ACGT	3 cut(s)	11, 90, 588
TaqII	GACCGA	1 cut(s)	1802
TatI	WGTACW	3 cut(s)	93, 543, 1248
TauI	GCSGC	5 cut(s)	51, 211, 668, 671, 923
TfiI	GAWTC	5 cut(s)	101, 1139, 1316, 1500, 1993
Tru1I	TTAA	1 cut(s)	1574
Tru9I	TTAA	1 cut(s)	1574
TscAI	CASTG	3 cut(s)	853, 958, 1573
TseFI	GTSAC	1 cut(s)	120
TseI	GCWGC	6 cut(s)	131, 308, 430, 554, 1006, 1424
Tsp45I	GTSAC	1 cut(s)	120
TspDTI	ATGAA	8 cut(s)	5, 86, 313, 734, 1613, 1664, 1681, 1955
TspGWI	ACGGA	1 cut(s)	440
TspMI	CCCGGG	1 cut(s)	434
TspRI	CASTG	3 cut(s)	853, 958, 1573
Tth111I	GACNNNGTC	1 cut(s)	253
Van91I	CCANNNNNTGG	2 cut(s)	304, 1027
VpaK11BI	GGWCC	3 cut(s)	265, 444, 603
VspI	ATTAAT	1 cut(s)	1574
XapI	RAATTY	3 cut(s)	912, 1652, 1720
XceI	RCATGY	2 cut(s)	745, 1156
XhoI	CTCGAG	1 cut(s)	1212
XmaI	CCCGGG	1 cut(s)	434
XmnI	GAANNNNTTC	1 cut(s)	1116
XspI	CTAG	1 cut(s)	1179
ZrmI	AGTACT	2 cut(s)	95, 545
Zsp2I	ATGCAT	2 cut(s)	291, 1581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.