Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0003020

Physical Location & Seq

Genomic Coordinates Forward (+)

15371984 .. 15372805

Gene Structure 822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1098300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGCTGCAACAATTGGGAATTGAAATCTTAACGAGTTTGGCGTTGGAAGCTGATGCAACTGAGAGAGTAGATGGAATAGGTGGAGCTCTTAAGGAGTTGTTTAACATTTTCTTCAATAAGGGAATGTTGAGGAATAATAAACATGTGAGGACAAAAGCTGGAGAAGCGTTGGCTATACTGGTGTTAGAGAGCAAGAATAATTGTCTGCGGATATTAAAATTGGGAGTACTTGAAAACCTCGTTGAAGCTCTTGAGGTGCAGGTGCTTCGGGTAATCACTTCAGAAGAACACAAACAGCAGGAAGCATTGGTAAGACTAGCAGCATCGGTTTTAGCATTCTTGTCTCCCGAAGAATCATGCCTCATGTTTAAGAAAGCCGGAATCACCGAGGGAGAAGTGACAAATGAACTAGTCCAGATTCTAAAGAAGTACAAGCATCCACCGATCAAAGTTTTCCATAGAGCTGGCAATCTGTATGATGAGAGACAAATTGGAAAATGTCCGAGTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

171

Amino Acids

18.97

Weight (kDa)

7.73

Isoelectric Point (pI)

47.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06210 AT3G06210 AT5G18980 AT5G18980 AT5G18980
fragaria_vesca	FvH4_4g14210
malus_domestica	MD12G1098300.v1.1 MD13G1180800.v1.1 MD16G1181500.v1.1
prunus_persica	Prupe.1G148900_v2.0.a1
pyrus_communis	pycom13g15600 pycom16g15230
rosa_chinensis	RchiOBHm_Chr4g0418921 RchiOBHm_Chr4g0418961 RchiOBHm_Chr4g0418981
rosa_laevigata	RLG00000007835 RLG00000007838
rosa_multiflora	Rmu_sc0000935.1_g000037 Rmu_sc0000935.1_g000062 Rmu_sc0001556.1_g000003
rosa_roxburghii	Rroxscaffold_5G00362050
rosa_rugosa	Rorug04G0155600 Rorug04G0155700
rosa_samantha	Rh4AG216900 Rh4AG217400 Rh4AG217700 Rh4BG212600 Rh4BG212700 Rh4BG213300 Rh4CG228700 Rh4CG229500 Rh4CG229600 Rh4DG215800 Rh4DG216200 Rh4DG216300
rosa_wichuraiana	Rw4G018550 Rw4G018590 Rw4G018600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	250
Acc36I	ACCTGC	1 cut(s)	250
AciI	CCGC	1 cut(s)	208
AcuI	CTGAAG	1 cut(s)	264
AfaI	GTAC	2 cut(s)	228, 431
AflII	CTTAAG	1 cut(s)	89
AflIII	ACRYGT	1 cut(s)	142
AgsI	TTSAA	4 cut(s)	23, 115, 233, 245
AhlI	ACTAGT	1 cut(s)	409
AluBI	AGCT	5 cut(s)	50, 86, 158, 248, 464
AluI	AGCT	5 cut(s)	50, 86, 158, 248, 464
Alw21I	GWGCWC	1 cut(s)	88
Alw26I	GTCTC	2 cut(s)	348, 478
ApeKI	GCWGC	2 cut(s)	4, 320
AsuHPI	GGTGA	1 cut(s)	376
BanII	GRGCYC	1 cut(s)	88
Bbv12I	GWGCWC	1 cut(s)	88
BbvI	GCAGC	1 cut(s)	332
BccI	CCATC	1 cut(s)	65
BcgI	CGANNNNNNTGC	2 cut(s)	248, 282
BcoDI	GTCTC	2 cut(s)	348, 478
BcuI	ACTAGT	1 cut(s)	409
BfaI	CTAG	2 cut(s)	317, 410
BfrI	CTTAAG	1 cut(s)	89
BfuAI	ACCTGC	1 cut(s)	250
BisI	GCNGC	2 cut(s)	5, 321
BlsI	GCNGC	2 cut(s)	6, 322
BmcAI	AGTACT	1 cut(s)	228
BmsI	GCATC	3 cut(s)	43, 332, 445
BpmI	CTGGAG	1 cut(s)	180
BpuEI	CTTGAG	1 cut(s)	272
BsaJI	CCNNGG	1 cut(s)	387
Bse1I	ACTGG	1 cut(s)	183
BseDI	CCNNGG	1 cut(s)	387
BseGI	GGATG	1 cut(s)	436
BseMII	CTCAG	1 cut(s)	51
BseNI	ACTGG	1 cut(s)	183
BseXI	GCAGC	1 cut(s)	332
BsgI	GTGCAG	1 cut(s)	278
BsiHKAI	GWGCWC	1 cut(s)	88
BsiSI	CCGG	1 cut(s)	378
BsmAI	GTCTC	2 cut(s)	348, 478
BsmI	GAATGC	1 cut(s)	335
Bsp1286I	GDGCHC	1 cut(s)	88
Bsp143I	GATC	1 cut(s)	444
BspACI	CCGC	1 cut(s)	208
BspCNI	CTCAG	1 cut(s)	52
BspMI	ACCTGC	1 cut(s)	250
BspTI	CTTAAG	1 cut(s)	89
BsrI	ACTGG	1 cut(s)	183
BssECI	CCNNGG	1 cut(s)	387
BssMI	GATC	1 cut(s)	444
BstAFI	CTTAAG	1 cut(s)	89
BstC8I	GCNNGC	1 cut(s)	466
BstDEI	CTNAG	1 cut(s)	60
BstF5I	GGATG	1 cut(s)	436
BstKTI	GATC	1 cut(s)	447
BstMAI	GTCTC	2 cut(s)	348, 478
BstMBI	GATC	1 cut(s)	444
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 164
BstNSI	RCATGY	1 cut(s)	146
BstV1I	GCAGC	1 cut(s)	332
BstXI	CCANNNNNNTGG	1 cut(s)	464
BtsCI	GGATG	1 cut(s)	436
BveI	ACCTGC	1 cut(s)	250
Cac8I	GCNNGC	1 cut(s)	466
Csp6I	GTAC	2 cut(s)	227, 430
CviAII	CATG	3 cut(s)	143, 357, 364
CviJI	RGCY	7 cut(s)	50, 86, 158, 173, 248, 377, 464
CviKI_1	RGCY	7 cut(s)	50, 86, 158, 173, 248, 377, 464
CviQI	GTAC	2 cut(s)	227, 430
DdeI	CTNAG	1 cut(s)	60
DpnI	GATC	1 cut(s)	446
DpnII	GATC	1 cut(s)	444
Ecl136II	GAGCTC	1 cut(s)	86
Eco24I	GRGCYC	1 cut(s)	88
Eco53kI	GAGCTC	1 cut(s)	86
Eco57I	CTGAAG	1 cut(s)	264
EcoICRI	GAGCTC	1 cut(s)	86
EcoT38I	GRGCYC	1 cut(s)	88
FaeI	CATG	3 cut(s)	146, 360, 367
FaiI	YATR	6 cut(s)	144, 176, 358, 365, 459, 477
FatI	CATG	3 cut(s)	142, 356, 363
Fnu4HI	GCNGC	2 cut(s)	5, 321
FokI	GGATG	1 cut(s)	423
FriOI	GRGCYC	1 cut(s)	88
Fsp4HI	GCNGC	2 cut(s)	5, 321
FspBI	CTAG	2 cut(s)	317, 410
GluI	GCNGC	2 cut(s)	5, 321
GsuI	CTGGAG	1 cut(s)	180
HapII	CCGG	1 cut(s)	378
Hin1II	CATG	3 cut(s)	146, 360, 367
HinfI	GANTC	3 cut(s)	353, 381, 418
HpaII	CCGG	1 cut(s)	378
HphI	GGTGA	1 cut(s)	376
Hpy188I	TCNGA	2 cut(s)	283, 504
Hpy188III	TCNNGA	3 cut(s)	251, 347, 415
HpyCH4V	TGCA	3 cut(s)	7, 56, 259
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 164
HpyF3I	CTNAG	1 cut(s)	60
Hsp92II	CATG	3 cut(s)	146, 360, 367
Kzo9I	GATC	1 cut(s)	444
LmnI	GCTCC	1 cut(s)	83
LpnPI	CCDG	7 cut(s)	144, 164, 245, 284, 391, 428, 450
Lsp1109I	GCAGC	1 cut(s)	332
LweI	GCATC	3 cut(s)	43, 332, 445
MaeI	CTAG	2 cut(s)	317, 410
MaeIII	GTNAC	1 cut(s)	397
MalI	GATC	1 cut(s)	446
MboI	GATC	1 cut(s)	444
MboII	GAAGA	3 cut(s)	103, 296, 362
MfeI	CAATTG	1 cut(s)	11
MhlI	GDGCHC	1 cut(s)	88
MluCI	AATT	5 cut(s)	11, 18, 199, 218, 489
MmeI	TCCRAC	1 cut(s)	24
MnlI	CCTC	6 cut(s)	123, 141, 247, 248, 371, 382
MseI	TTAA	5 cut(s)	29, 90, 102, 215, 369
MspCI	CTTAAG	1 cut(s)	89
MspI	CCGG	1 cut(s)	378
MunI	CAATTG	1 cut(s)	11
Mva1269I	GAATGC	1 cut(s)	335
MwoI	GCNNNNNNNGC	2 cut(s)	47, 164
NdeII	GATC	1 cut(s)	444
NlaIII	CATG	3 cut(s)	146, 360, 367
NmuCI	GTSAC	1 cut(s)	397
NspI	RCATGY	1 cut(s)	146
PaqCI	CACCTGC	1 cut(s)	250
PciI	ACATGT	1 cut(s)	142
PcsI	WCGNNNNNNNCGW	1 cut(s)	38
PctI	GAATGC	1 cut(s)	335
PfeI	GAWTC	3 cut(s)	353, 381, 418
PkrI	GCNGC	2 cut(s)	6, 322
PscI	ACATGT	1 cut(s)	142
Psp124BI	GAGCTC	1 cut(s)	88
RsaI	GTAC	2 cut(s)	228, 431
RsaNI	GTAC	2 cut(s)	227, 430
SacI	GAGCTC	1 cut(s)	88
SaqAI	TTAA	5 cut(s)	29, 90, 102, 215, 369
SatI	GCNGC	2 cut(s)	5, 321
Sau3AI	GATC	1 cut(s)	444
ScaI	AGTACT	1 cut(s)	228
SduI	GDGCHC	1 cut(s)	88
SetI	ASST	9 cut(s)	52, 82, 88, 160, 240, 250, 258, 264, 466
SfaNI	GCATC	3 cut(s)	43, 332, 445
SmlI	CTYRAG	2 cut(s)	89, 251
SmoI	CTYRAG	2 cut(s)	89, 251
SpeI	ACTAGT	1 cut(s)	409
Sse9I	AATT	5 cut(s)	11, 18, 199, 218, 489
SsiI	CCGC	1 cut(s)	208
SspMI	CTAG	2 cut(s)	317, 410
SstI	GAGCTC	1 cut(s)	88
TasI	AATT	5 cut(s)	11, 18, 199, 218, 489
TatI	WGTACW	2 cut(s)	226, 429
TfiI	GAWTC	3 cut(s)	353, 381, 418
Tru1I	TTAA	5 cut(s)	29, 90, 102, 215, 369
Tru9I	TTAA	5 cut(s)	29, 90, 102, 215, 369
TseFI	GTSAC	1 cut(s)	397
TseI	GCWGC	2 cut(s)	4, 320
Tsp45I	GTSAC	1 cut(s)	397
TspDTI	ATGAA	1 cut(s)	420
Vha464I	CTTAAG	1 cut(s)	89
XceI	RCATGY	1 cut(s)	146
XspI	CTAG	2 cut(s)	317, 410
ZrmI	AGTACT	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.