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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G06210 AT3G06210 AT5G18980 AT5G18980 AT5G18980 |
| fragaria_vesca | FvH4_4g14210 |
| malus_domestica | MD12G1098300.v1.1 MD13G1180800.v1.1 MD16G1181500.v1.1 |
| prunus_persica | Prupe.1G148900_v2.0.a1 |
| pyrus_communis | pycom13g15600 pycom16g15230 |
| rosa_chinensis | RchiOBHm_Chr4g0418921 RchiOBHm_Chr4g0418961 RchiOBHm_Chr4g0418981 |
| rosa_laevigata | RLG00000007835 RLG00000007838 |
| rosa_multiflora | Rmu_sc0000935.1_g000037 Rmu_sc0000935.1_g000062 Rmu_sc0001556.1_g000003 |
| rosa_roxburghii | Rroxscaffold_5G00362050 |
| rosa_rugosa | Rorug04G0155600 Rorug04G0155700 |
| rosa_samantha | Rh4AG216900 Rh4AG217400 Rh4AG217700 Rh4BG212600 Rh4BG212700 Rh4BG213300 Rh4CG228700 Rh4CG229500 Rh4CG229600 Rh4DG215800 Rh4DG216200 Rh4DG216300 |
| rosa_wichuraiana | Rw4G018550 Rw4G018590 Rw4G018600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1331 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2464 |
| AccII | CGCG | 3 cut(s) | 444, 657, 659 |
| AccIII | TCCGGA | 1 cut(s) | 1269 |
| AciI | CCGC | 2 cut(s) | 291, 1111 |
| AclWI | GGATC | 1 cut(s) | 437 |
| AcsI | RAATTY | 5 cut(s) | 574, 1051, 1083, 2008, 2337 |
| AcuI | CTGAAG | 7 cut(s) | 915, 1154, 1451, 1539, 1553, 2223, 2258 |
| AfaI | GTAC | 3 cut(s) | 1549, 1941, 2425 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1591, 1831, 2464 |
| AflII | CTTAAG | 1 cut(s) | 1802 |
| AflIII | ACRYGT | 1 cut(s) | 2140 |
| AjnI | CCWGG | 2 cut(s) | 1285, 2112 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2109, 2141 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2094, 2126 |
| Alw21I | GWGCWC | 5 cut(s) | 63, 228, 617, 2018, 2082 |
| Alw26I | GTCTC | 5 cut(s) | 531, 765, 2163, 2378, 2465 |
| Alw44I | GTGCAC | 1 cut(s) | 2014 |
| AlwI | GGATC | 1 cut(s) | 437 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 179, 2236 |
| Aor13HI | TCCGGA | 1 cut(s) | 1269 |
| AoxI | GGCC | 4 cut(s) | 244, 822, 926, 1483 |
| ApaLI | GTGCAC | 1 cut(s) | 2014 |
| ApeKI | GCWGC | 7 cut(s) | 236, 531, 1066, 1223, 1991, 2135, 2485 |
| ApoI | RAATTY | 5 cut(s) | 574, 1051, 1083, 2008, 2337 |
| AseI | ATTAAT | 1 cut(s) | 728 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 809, 1372, 1648 |
| AspLEI | GCGC | 3 cut(s) | 446, 659, 747 |
| AspS9I | GGNCC | 3 cut(s) | 158, 926, 1483 |
| AsuC2I | CCSGG | 1 cut(s) | 427 |
| AsuHPI | GGTGA | 4 cut(s) | 41, 295, 767, 1606 |
| AsuNHI | GCTAGC | 2 cut(s) | 217, 2488 |
| AvaII | GGWCC | 1 cut(s) | 158 |
| AxyI | CCTNAGG | 1 cut(s) | 2003 |
| BaeGI | GKGCMC | 1 cut(s) | 2018 |
| BanII | GRGCYC | 2 cut(s) | 63, 617 |
| BbsI | GAAGAC | 1 cut(s) | 2322 |
| Bbv12I | GWGCWC | 5 cut(s) | 63, 228, 617, 2018, 2082 |
| BbvI | GCAGC | 7 cut(s) | 248, 543, 1078, 1210, 1978, 2122, 2472 |
| BccI | CCATC | 8 cut(s) | 308, 844, 995, 1006, 1274, 2305, 2350, 2489 |
| BciT130I | CCWGG | 2 cut(s) | 1287, 2114 |
| BclI | TGATCA | 1 cut(s) | 1558 |
| BcnI | CCSGG | 1 cut(s) | 427 |
| BcoDI | GTCTC | 5 cut(s) | 531, 765, 2163, 2378, 2465 |
| BfaI | CTAG | 9 cut(s) | 218, 287, 360, 1883, 1964, 1995, 2132, 2381, 2489 |
| BfmI | CTRYAG | 6 cut(s) | 87, 1224, 1324, 2073, 2391, 2427 |
| BfrI | CTTAAG | 1 cut(s) | 1802 |
| BfuAI | ACCTGC | 1 cut(s) | 1331 |
| BisI | GCNGC | 7 cut(s) | 237, 532, 1067, 1224, 1992, 2136, 2486 |
| BlsI | GCNGC | 7 cut(s) | 238, 533, 1068, 1225, 1993, 2137, 2487 |
| Bme1390I | CCNGG | 3 cut(s) | 427, 1287, 2114 |
| Bme18I | GGWCC | 1 cut(s) | 158 |
| BmgT120I | GGNCC | 3 cut(s) | 158, 926, 1483 |
| BmiI | GGNNCC | 4 cut(s) | 159, 689, 927, 1484 |
| BmrFI | CCNGG | 3 cut(s) | 427, 1287, 2114 |
| BmrI | ACTGGG | 1 cut(s) | 1943 |
| BmsI | GCATC | 7 cut(s) | 412, 666, 713, 955, 1352, 1756, 2260 |
| BmtI | GCTAGC | 2 cut(s) | 221, 2492 |
| BmuI | ACTGGG | 1 cut(s) | 1943 |
| BpiI | GAAGAC | 1 cut(s) | 2322 |
| BpmI | CTGGAG | 8 cut(s) | 674, 1299, 1536, 1862, 1893, 2096, 2145, 2390 |
| BpuEI | CTTGAG | 3 cut(s) | 445, 1318, 2066 |
| BpuMI | CCSGG | 1 cut(s) | 427 |
| Bsa29I | ATCGAT | 1 cut(s) | 1503 |
| BsaI | GGTCTC | 1 cut(s) | 2378 |
| BsaJI | CCNNGG | 3 cut(s) | 247, 825, 1032 |
| BsaWI | WCCGGW | 1 cut(s) | 1269 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 2094, 2124, 2357, 2387 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1591, 1831, 2464 |
| Bse118I | RCCGGY | 1 cut(s) | 242 |
| Bse1I | ACTGG | 6 cut(s) | 1248, 1750, 1761, 1938, 1947, 2469 |
| Bse21I | CCTNAGG | 1 cut(s) | 2003 |
| Bse3DI | GCAATG | 2 cut(s) | 1107, 1299 |
| BseAI | TCCGGA | 1 cut(s) | 1269 |
| BseBI | CCWGG | 2 cut(s) | 1287, 2114 |
| BseCI | ATCGAT | 1 cut(s) | 1503 |
| BseDI | CCNNGG | 3 cut(s) | 247, 825, 1032 |
| BseGI | GGATG | 6 cut(s) | 904, 1266, 1771, 2251, 2313, 2361 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1591, 1831, 2464 |
| BseMI | GCAATG | 2 cut(s) | 1107, 1299 |
| BseMII | CTCAG | 7 cut(s) | 33, 125, 630, 714, 1071, 1682, 1764 |
| BseNI | ACTGG | 6 cut(s) | 1248, 1750, 1761, 1938, 1947, 2469 |
| BseSI | GKGCMC | 1 cut(s) | 2018 |
| BseXI | GCAGC | 7 cut(s) | 248, 543, 1078, 1210, 1978, 2122, 2472 |
| BsgI | GTGCAG | 2 cut(s) | 165, 2121 |
| Bsh1236I | CGCG | 3 cut(s) | 444, 657, 659 |
| BshFI | GGCC | 4 cut(s) | 246, 824, 928, 1485 |
| BshVI | ATCGAT | 1 cut(s) | 1503 |
| BsiHKAI | GWGCWC | 5 cut(s) | 63, 228, 617, 2018, 2082 |
| BsiSI | CCGG | 4 cut(s) | 214, 243, 426, 1270 |
| BslFI | GGGAC | 2 cut(s) | 370, 608 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1591, 1831, 2464 |
| BsmAI | GTCTC | 5 cut(s) | 531, 765, 2163, 2378, 2465 |
| BsmFI | GGGAC | 2 cut(s) | 370, 608 |
| BsmI | GAATGC | 4 cut(s) | 39, 1842, 1993, 2068 |
| BsnI | GGCC | 4 cut(s) | 246, 824, 928, 1485 |
| Bso31I | GGTCTC | 1 cut(s) | 2378 |
| Bsp1286I | GDGCHC | 5 cut(s) | 63, 228, 617, 2018, 2082 |
| Bsp13I | TCCGGA | 1 cut(s) | 1269 |
| Bsp143I | GATC | 5 cut(s) | 429, 580, 1192, 1217, 1558 |
| Bsp19I | CCATGG | 1 cut(s) | 1032 |
| BspACI | CCGC | 2 cut(s) | 291, 1111 |
| BspANI | GGCC | 4 cut(s) | 246, 824, 928, 1485 |
| BspCNI | CTCAG | 7 cut(s) | 32, 124, 629, 713, 1070, 1683, 1765 |
| BspDI | ATCGAT | 1 cut(s) | 1503 |
| BspEI | TCCGGA | 1 cut(s) | 1269 |
| BspFNI | CGCG | 3 cut(s) | 444, 657, 659 |
| BspLI | GGNNCC | 4 cut(s) | 159, 689, 927, 1484 |
| BspMAI | CTGCAG | 4 cut(s) | 91, 1228, 1328, 2395 |
| BspMI | ACCTGC | 1 cut(s) | 1331 |
| BspOI | GCTAGC | 2 cut(s) | 221, 2492 |
| BspPI | GGATC | 1 cut(s) | 437 |
| BspTI | CTTAAG | 1 cut(s) | 1802 |
| BspTNI | GGTCTC | 1 cut(s) | 2378 |
| BsrDI | GCAATG | 2 cut(s) | 1107, 1299 |
| BsrFI | RCCGGY | 1 cut(s) | 242 |
| BsrI | ACTGG | 6 cut(s) | 1248, 1750, 1761, 1938, 1947, 2469 |
| BssAI | RCCGGY | 1 cut(s) | 242 |
| BssECI | CCNNGG | 3 cut(s) | 247, 825, 1032 |
| BssMI | GATC | 5 cut(s) | 429, 580, 1192, 1217, 1558 |
| BssT1I | CCWWGG | 3 cut(s) | 247, 825, 1032 |
| Bst2UI | CCWGG | 2 cut(s) | 1287, 2114 |
| Bst4CI | ACNGT | 6 cut(s) | 277, 437, 1460, 2024, 2036, 2428 |
| Bst6I | CTCTTC | 4 cut(s) | 1197, 1515, 1592, 1755 |
| BstAFI | CTTAAG | 1 cut(s) | 1802 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 179 |
| BstC8I | GCNNGC | 8 cut(s) | 219, 1249, 1605, 1609, 1893, 2298, 2441, 2490 |
| BstDSI | CCRYGG | 1 cut(s) | 1032 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1829 |
| BstF5I | GGATG | 6 cut(s) | 904, 1266, 1771, 2251, 2313, 2361 |
| BstFNI | CGCG | 3 cut(s) | 444, 657, 659 |
| BstHHI | GCGC | 3 cut(s) | 446, 659, 747 |
| BstKTI | GATC | 5 cut(s) | 432, 583, 1195, 1220, 1561 |
| BstMAI | GTCTC | 5 cut(s) | 531, 765, 2163, 2378, 2465 |
| BstMBI | GATC | 5 cut(s) | 429, 580, 1192, 1217, 1558 |
| BstNI | CCWGG | 2 cut(s) | 1287, 2114 |
| BstNSI | RCATGY | 2 cut(s) | 1517, 2144 |
| BstSCI | CCNGG | 3 cut(s) | 425, 1285, 2112 |
| BstSFI | CTRYAG | 6 cut(s) | 87, 1224, 1324, 2073, 2391, 2427 |
| BstSLI | GKGCMC | 1 cut(s) | 2018 |
| BstUI | CGCG | 3 cut(s) | 444, 657, 659 |
| BstV1I | GCAGC | 7 cut(s) | 248, 543, 1078, 1210, 1978, 2122, 2472 |
| BstV2I | GAAGAC | 1 cut(s) | 2322 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2296 |
| Bsu15I | ATCGAT | 1 cut(s) | 1503 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2003 |
| BsuRI | GGCC | 4 cut(s) | 246, 824, 928, 1485 |
| BsuTUI | ATCGAT | 1 cut(s) | 1503 |
| BtgI | CCRYGG | 1 cut(s) | 1032 |
| BtsCI | GGATG | 6 cut(s) | 904, 1266, 1771, 2251, 2313, 2361 |
| BtsI | GCAGTG | 2 cut(s) | 141, 2388 |
| BtsIMutI | CAGTG | 9 cut(s) | 141, 774, 1161, 1363, 1571, 1754, 2029, 2388, 2462 |
| BveI | ACCTGC | 1 cut(s) | 1331 |
| Cac8I | GCNNGC | 8 cut(s) | 219, 1249, 1605, 1609, 1893, 2298, 2441, 2490 |
| CaiI | CAGNNNCTG | 2 cut(s) | 179, 2236 |
| CfoI | GCGC | 3 cut(s) | 446, 659, 747 |
| Cfr10I | RCCGGY | 1 cut(s) | 242 |
| Cfr13I | GGNCC | 3 cut(s) | 158, 926, 1483 |
| ClaI | ATCGAT | 1 cut(s) | 1503 |
| Csp6I | GTAC | 3 cut(s) | 1548, 1940, 2424 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 135, 170 |
| CviAII | CATG | 7 cut(s) | 380, 1033, 1382, 1514, 1544, 2092, 2141 |
| CviQI | GTAC | 3 cut(s) | 1548, 1940, 2424 |
| DpnI | GATC | 5 cut(s) | 431, 582, 1194, 1219, 1560 |
| DpnII | GATC | 5 cut(s) | 429, 580, 1192, 1217, 1558 |
| Eam1104I | CTCTTC | 4 cut(s) | 1197, 1515, 1592, 1755 |
| EarI | CTCTTC | 4 cut(s) | 1197, 1515, 1592, 1755 |
| Ecl136II | GAGCTC | 2 cut(s) | 61, 615 |
| Eco130I | CCWWGG | 3 cut(s) | 247, 825, 1032 |
| Eco24I | GRGCYC | 2 cut(s) | 63, 617 |
| Eco31I | GGTCTC | 1 cut(s) | 2378 |
| Eco47I | GGWCC | 1 cut(s) | 158 |
| Eco53kI | GAGCTC | 2 cut(s) | 61, 615 |
| Eco57I | CTGAAG | 7 cut(s) | 915, 1154, 1451, 1539, 1553, 2223, 2258 |
| Eco81I | CCTNAGG | 1 cut(s) | 2003 |
| EcoICRI | GAGCTC | 2 cut(s) | 61, 615 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1829 |
| EcoO109I | RGGNCCY | 2 cut(s) | 926, 1483 |
| EcoRII | CCWGG | 2 cut(s) | 1285, 2112 |
| EcoT14I | CCWWGG | 3 cut(s) | 247, 825, 1032 |
| EcoT38I | GRGCYC | 2 cut(s) | 63, 617 |
| ErhI | CCWWGG | 3 cut(s) | 247, 825, 1032 |
| FaeI | CATG | 7 cut(s) | 383, 1036, 1385, 1517, 1547, 2095, 2144 |
| FaqI | GGGAC | 2 cut(s) | 370, 608 |
| FatI | CATG | 7 cut(s) | 379, 1032, 1381, 1513, 1543, 2091, 2140 |
| FauNDI | CATATG | 1 cut(s) | 637 |
| FbaI | TGATCA | 1 cut(s) | 1558 |
| Fnu4HI | GCNGC | 7 cut(s) | 237, 532, 1067, 1224, 1992, 2136, 2486 |
| FokI | GGATG | 6 cut(s) | 911, 1253, 1778, 2238, 2320, 2368 |
| FriOI | GRGCYC | 2 cut(s) | 63, 617 |
| Fsp4HI | GCNGC | 7 cut(s) | 237, 532, 1067, 1224, 1992, 2136, 2486 |
| FspBI | CTAG | 9 cut(s) | 218, 287, 360, 1883, 1964, 1995, 2132, 2381, 2489 |
| GlaI | GCGC | 3 cut(s) | 445, 658, 746 |
| GluI | GCNGC | 7 cut(s) | 237, 532, 1067, 1224, 1992, 2136, 2486 |
| GsuI | CTGGAG | 8 cut(s) | 674, 1299, 1536, 1862, 1893, 2096, 2145, 2390 |
| HaeIII | GGCC | 4 cut(s) | 246, 824, 928, 1485 |
| HapII | CCGG | 4 cut(s) | 214, 243, 426, 1270 |
| HhaI | GCGC | 3 cut(s) | 446, 659, 747 |
| Hin1II | CATG | 7 cut(s) | 383, 1036, 1385, 1517, 1547, 2095, 2144 |
| Hin6I | GCGC | 3 cut(s) | 444, 657, 745 |
| HinP1I | GCGC | 3 cut(s) | 444, 657, 745 |
| HincII | GTYRAC | 1 cut(s) | 527 |
| HindII | GTYRAC | 1 cut(s) | 527 |
| HindIII | AAGCTT | 3 cut(s) | 463, 858, 2404 |
| HinfI | GANTC | 9 cut(s) | 557, 794, 1298, 1368, 1395, 1633, 1998, 2168, 2233 |
| HpaII | CCGG | 4 cut(s) | 214, 243, 426, 1270 |
| HphI | GGTGA | 4 cut(s) | 41, 295, 767, 1606 |
| Hpy166II | GTNNAC | 3 cut(s) | 527, 907, 2016 |
| Hpy188III | TCNNGA | 9 cut(s) | 975, 1196, 1270, 1399, 1553, 1964, 2162, 2230, 2353 |
| Hpy8I | GTNNAC | 3 cut(s) | 527, 907, 2016 |
| Hpy99I | CGWCG | 1 cut(s) | 1218 |
| HpyAV | CCTTC | 6 cut(s) | 20, 26, 293, 939, 1528, 2356 |
| HpyCH4III | ACNGT | 6 cut(s) | 277, 437, 1460, 2024, 2036, 2428 |
| Hsp92II | CATG | 7 cut(s) | 383, 1036, 1385, 1517, 1547, 2095, 2144 |
| HspAI | GCGC | 3 cut(s) | 444, 657, 745 |
| Kpn2I | TCCGGA | 1 cut(s) | 1269 |
| Ksp22I | TGATCA | 1 cut(s) | 1558 |
| Kzo9I | GATC | 5 cut(s) | 429, 580, 1192, 1217, 1558 |
| LmnI | GCTCC | 6 cut(s) | 66, 693, 1076, 1320, 1586, 2365 |
| Lsp1109I | GCAGC | 7 cut(s) | 248, 543, 1078, 1210, 1978, 2122, 2472 |
| LweI | GCATC | 7 cut(s) | 412, 666, 713, 955, 1352, 1756, 2260 |
| MaeI | CTAG | 9 cut(s) | 218, 287, 360, 1883, 1964, 1995, 2132, 2381, 2489 |
| MaeIII | GTNAC | 2 cut(s) | 1021, 1445 |
| MalI | GATC | 5 cut(s) | 431, 582, 1194, 1219, 1560 |
| MboI | GATC | 5 cut(s) | 429, 580, 1192, 1217, 1558 |
| MfeI | CAATTG | 2 cut(s) | 1589, 1724 |
| MhlI | GDGCHC | 5 cut(s) | 63, 228, 617, 2018, 2082 |
| MlyI | GAGTC | 1 cut(s) | 803 |
| MmeI | TCCRAC | 3 cut(s) | 185, 1237, 2107 |
| MroI | TCCGGA | 1 cut(s) | 1269 |
| MroXI | GAANNNNTTC | 3 cut(s) | 809, 1372, 1648 |
| MseI | TTAA | 8 cut(s) | 728, 948, 1742, 1803, 1827, 1928, 2184, 2262 |
| MspA1I | CMGCKG | 2 cut(s) | 1111, 1223 |
| MspCI | CTTAAG | 1 cut(s) | 1802 |
| MspI | CCGG | 4 cut(s) | 214, 243, 426, 1270 |
| MspR9I | CCNGG | 3 cut(s) | 427, 1287, 2114 |
| MunI | CAATTG | 2 cut(s) | 1589, 1724 |
| Mva1269I | GAATGC | 4 cut(s) | 39, 1842, 1993, 2068 |
| MvaI | CCWGG | 2 cut(s) | 1287, 2114 |
| MvnI | CGCG | 3 cut(s) | 444, 657, 659 |
| NciI | CCSGG | 1 cut(s) | 427 |
| NcoI | CCATGG | 1 cut(s) | 1032 |
| NdeI | CATATG | 1 cut(s) | 637 |
| NdeII | GATC | 5 cut(s) | 429, 580, 1192, 1217, 1558 |
| NheI | GCTAGC | 2 cut(s) | 217, 2488 |
| NlaIII | CATG | 7 cut(s) | 383, 1036, 1385, 1517, 1547, 2095, 2144 |
| NlaIV | GGNNCC | 4 cut(s) | 159, 689, 927, 1484 |
| NmuCI | GTSAC | 1 cut(s) | 1445 |
| NspI | RCATGY | 2 cut(s) | 1517, 2144 |
| PciI | ACATGT | 1 cut(s) | 2140 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1978 |
| PctI | GAATGC | 4 cut(s) | 39, 1842, 1993, 2068 |
| PdmI | GAANNNNTTC | 3 cut(s) | 809, 1372, 1648 |
| PfeI | GAWTC | 8 cut(s) | 557, 1298, 1368, 1395, 1633, 1998, 2168, 2233 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2464 |
| PfoI | TCCNGGA | 1 cut(s) | 2112 |
| PkrI | GCNGC | 7 cut(s) | 238, 533, 1068, 1225, 1993, 2137, 2487 |
| PleI | GAGTC | 1 cut(s) | 802 |
| PpsI | GAGTC | 1 cut(s) | 802 |
| PscI | ACATGT | 1 cut(s) | 2140 |
| PshBI | ATTAAT | 1 cut(s) | 728 |
| Psp124BI | GAGCTC | 2 cut(s) | 63, 617 |
| Psp6I | CCWGG | 2 cut(s) | 1285, 2112 |
| PspGI | CCWGG | 2 cut(s) | 1285, 2112 |
| PspN4I | GGNNCC | 4 cut(s) | 159, 689, 927, 1484 |
| PspPI | GGNCC | 3 cut(s) | 158, 926, 1483 |
| PstI | CTGCAG | 4 cut(s) | 91, 1228, 1328, 2395 |
| PstNI | CAGNNNCTG | 2 cut(s) | 179, 2236 |
| PvuII | CAGCTG | 1 cut(s) | 1223 |
| RsaI | GTAC | 3 cut(s) | 1549, 1941, 2425 |
| RsaNI | GTAC | 3 cut(s) | 1548, 1940, 2424 |
| SacI | GAGCTC | 2 cut(s) | 63, 617 |
| SaqAI | TTAA | 8 cut(s) | 728, 948, 1742, 1803, 1827, 1928, 2184, 2262 |
| SatI | GCNGC | 7 cut(s) | 237, 532, 1067, 1224, 1992, 2136, 2486 |
| Sau3AI | GATC | 5 cut(s) | 429, 580, 1192, 1217, 1558 |
| Sau96I | GGNCC | 3 cut(s) | 158, 926, 1483 |
| SchI | GAGTC | 1 cut(s) | 803 |
| ScrFI | CCNGG | 3 cut(s) | 427, 1287, 2114 |
| SduI | GDGCHC | 5 cut(s) | 63, 228, 617, 2018, 2082 |
| SfaNI | GCATC | 7 cut(s) | 412, 666, 713, 955, 1352, 1756, 2260 |
| SfcI | CTRYAG | 6 cut(s) | 87, 1224, 1324, 2073, 2391, 2427 |
| SinI | GGWCC | 1 cut(s) | 158 |
| SmlI | CTYRAG | 4 cut(s) | 460, 1333, 1802, 2081 |
| SmoI | CTYRAG | 4 cut(s) | 460, 1333, 1802, 2081 |
| SsiI | CCGC | 2 cut(s) | 291, 1111 |
| SspI | AATATT | 1 cut(s) | 1233 |
| SspMI | CTAG | 9 cut(s) | 218, 287, 360, 1883, 1964, 1995, 2132, 2381, 2489 |
| SstI | GAGCTC | 2 cut(s) | 63, 617 |
| StyD4I | CCNGG | 3 cut(s) | 425, 1285, 2112 |
| StyI | CCWWGG | 3 cut(s) | 247, 825, 1032 |
| TaaI | ACNGT | 6 cut(s) | 277, 437, 1460, 2024, 2036, 2428 |
| TaqI | TCGA | 3 cut(s) | 228, 1503, 1972 |
| TfiI | GAWTC | 8 cut(s) | 557, 1298, 1368, 1395, 1633, 1998, 2168, 2233 |
| Tru1I | TTAA | 8 cut(s) | 728, 948, 1742, 1803, 1827, 1928, 2184, 2262 |
| Tru9I | TTAA | 8 cut(s) | 728, 948, 1742, 1803, 1827, 1928, 2184, 2262 |
| TscAI | CASTG | 9 cut(s) | 148, 781, 1161, 1363, 1578, 1761, 2029, 2395, 2469 |
| TseFI | GTSAC | 1 cut(s) | 1445 |
| TseI | GCWGC | 7 cut(s) | 236, 531, 1066, 1223, 1991, 2135, 2485 |
| Tsp45I | GTSAC | 1 cut(s) | 1445 |
| TspRI | CASTG | 9 cut(s) | 148, 781, 1161, 1363, 1578, 1761, 2029, 2395, 2469 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2464 |
| Vha464I | CTTAAG | 1 cut(s) | 1802 |
| VneI | GTGCAC | 1 cut(s) | 2014 |
| VpaK11BI | GGWCC | 1 cut(s) | 158 |
| VspI | ATTAAT | 1 cut(s) | 728 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1829 |
| XapI | RAATTY | 5 cut(s) | 574, 1051, 1083, 2008, 2337 |
| XbaI | TCTAGA | 1 cut(s) | 1963 |
| XceI | RCATGY | 2 cut(s) | 1517, 2144 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 642, 1039, 1388, 1457 |
| XmnI | GAANNNNTTC | 3 cut(s) | 809, 1372, 1648 |
| XspI | CTAG | 9 cut(s) | 218, 287, 360, 1883, 1964, 1995, 2132, 2381, 2489 |