Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003020

Physical Location & Seq

Genomic Coordinates Reverse (-)

27248031 .. 27251874

Gene Structure 3844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0155700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGGATAAGGACAAGTCTCCTGCGCATGGTGAAGGTTTACCACCACCATCAGGCAGGCACTCAAGTCATTTGCCGACTTACAATGTGAAAACTGAACCCTCTTCATCACCATCATTTCCACCATTGGCCTCTGGTGCTACTGCAGAACCAGGTCATTTTGGTCACGGAATGTCCACTGAATCTAATCACTTTAGTCATGATATTAGCCGAATGCCAGATTACCCACCAAGAAAATTGGGTCATAGACGTGCCCATTCAGAAATCGTGACCCTTCCAGATGATATTGGCTTTGATAGTGACCTTGGTGTTGTGGGTGTTGCCGATGGTCCTTCATTTTCAGATGAGACAGAGGAAGACTTGTTGTCTATGTACCTTGATATGGACAAATTCAATTCTTCATCTGCTACATCAGCCTTTCAAATGGGCGAACCATCAGCTTCTGCTACACCAGCTGCTCCAGCAACAAGAGCGGTCACAAGTTCTACAGAGAATATCAGCATGGGTATTCATGAGAGACCCAGAGTTAGGCACCAGCATAGCCAATCAATGGATGGATCAACAACAATCAAAACAGAGATGCTGGTGTCGAGTTCAGAAGAGATGTTTGCAGCTGATTCCAAGAAAGCCATGTCAGCTACCAAGCTTTCAGAACTTGCCCTAATTGATCCAAAACGTGCAAAGAGGATCTGGGCAAATAGGCAGTCAGCTGCAAGGTCAAAGGAAAGGAAGATGCGGTACATTGCAGAGCTTGAACAGAATGTTCAGACCTTGCAAACAGACGCAACATCGTTGTCAGCTCAATTGACTCTCTTGCAGAGTGACACAAATGGGCTGACTGCTGAAAATAGTGAACTGAAACTGCGCTTGCAAACGATGGAACAACAGGTTCACTTACAAGATGCACTTAATGATGCACTGAAAGAGGAAATTCAGCACCTGAAAGTTCTGATTGGCCAAGCAATGCCAAATGGTGGACCTATGATGAACTTTGCTTGTTTTGGTGCTTGTGCTGATGCTGGTCCTAGTGCTAGCCATCAATTTTATCCAAACAATCAAGCCATGCACACTTTTCTAACTGCACAGCAATTTCAACAACTCCAGATACATTCTCAGAAGCAGCAGCATCAGTTTCAGCAGCATCAACTACATCAACTTCAACAACAACACATGCAGGAACAACAACAACAGCAGCAACCACAACAGCAGCAACAACAACAAAGTAAGGACTTGAAAATAGAAGCAACCATGCAGTCTCCAAGCCAAAAAGATAATGCTTTAGAGGTCAACCAAGCAGTAGCAAAGGATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

436

Amino Acids

48.14

Weight (kDa)

5.87

Isoelectric Point (pI)

66.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	222 - 272	3.4e-06	Basic region leucine zipper
bZIP_1	PF00170	224 - 280	8.5e-07	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06210 AT3G06210 AT5G18980 AT5G18980 AT5G18980
fragaria_vesca	FvH4_4g14210
malus_domestica	MD12G1098300.v1.1 MD13G1180800.v1.1 MD16G1181500.v1.1
prunus_persica	Prupe.1G148900_v2.0.a1
pyrus_communis	pycom13g15600 pycom16g15230
rosa_chinensis	RchiOBHm_Chr4g0418921 RchiOBHm_Chr4g0418961 RchiOBHm_Chr4g0418981
rosa_laevigata	RLG00000007835 RLG00000007838
rosa_multiflora	Rmu_sc0000935.1_g000037 Rmu_sc0000935.1_g000062 Rmu_sc0001556.1_g000003
rosa_roxburghii	Rroxscaffold_5G00362050
rosa_rugosa	Rorug04G0155600 Rorug04G0155700
rosa_samantha	Rh4AG216900 Rh4AG217400 Rh4AG217700 Rh4BG212600 Rh4BG212700 Rh4BG213300 Rh4CG228700 Rh4CG229500 Rh4CG229600 Rh4DG215800 Rh4DG216200 Rh4DG216300
rosa_wichuraiana	Rw4G018550 Rw4G018590 Rw4G018600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	24
AccB1I	GGYRCC	1 cut(s)	528
AccB7I	CCANNNNNTGG	2 cut(s)	547, 971
AccBSI	CCGCTC	1 cut(s)	470
AciI	CCGC	2 cut(s)	470, 733
AclWI	GGATC	3 cut(s)	562, 659, 692
AcoI	YGGCCR	1 cut(s)	952
AcsI	RAATTY	2 cut(s)	386, 927
AfaI	GTAC	2 cut(s)	371, 737
AfiI	CCNNNNNNNGG	6 cut(s)	26, 50, 379, 525, 547, 971
AgsI	TTSAA	6 cut(s)	391, 419, 752, 1091, 1157, 1231
AhdI	GACNNNNNGTC	1 cut(s)	361
AjiI	CACGTC	1 cut(s)	248
AjnI	CCWGG	1 cut(s)	148
AluBI	AGCT	8 cut(s)	437, 452, 611, 635, 643, 707, 748, 797
AluI	AGCT	8 cut(s)	437, 452, 611, 635, 643, 707, 748, 797
Alw26I	GTCTC	4 cut(s)	21, 338, 508, 1257
AlwI	GGATC	3 cut(s)	562, 659, 692
AlwNI	CAGNNNCTG	2 cut(s)	440, 937
AoxI	GGCC	2 cut(s)	126, 952
ApeKI	GCWGC	8 cut(s)	452, 608, 707, 1117, 1120, 1135, 1189, 1204
ApoI	RAATTY	2 cut(s)	386, 927
ArsI	GACNNNNNNTTYG	2 cut(s)	686, 718
AspLEI	GCGC	2 cut(s)	25, 864
AspS9I	GGNCC	3 cut(s)	326, 974, 1019
AsuHPI	GGTGA	2 cut(s)	41, 99
AsuNHI	GCTAGC	1 cut(s)	1028
AvaII	GGWCC	3 cut(s)	326, 974, 1019
BaeGI	GKGCMC	1 cut(s)	253
BalI	TGGCCA	1 cut(s)	954
BanI	GGYRCC	1 cut(s)	528
BarI	GAAGNNNNNNTAC	2 cut(s)	719, 751
BbsI	GAAGAC	1 cut(s)	360
BbvI	GCAGC	8 cut(s)	439, 620, 694, 1129, 1132, 1147, 1201, 1216
BccI	CCATC	7 cut(s)	55, 118, 317, 439, 545, 868, 1041
BciT130I	CCWGG	1 cut(s)	150
BcoDI	GTCTC	4 cut(s)	21, 338, 508, 1257
BfaI	CTAG	2 cut(s)	1023, 1029
BfmI	CTRYAG	2 cut(s)	141, 483
BisI	GCNGC	8 cut(s)	453, 609, 708, 1118, 1121, 1136, 1190, 1205
BlsI	GCNGC	8 cut(s)	454, 610, 709, 1119, 1122, 1137, 1191, 1206
Bme1390I	CCNGG	1 cut(s)	150
Bme18I	GGWCC	3 cut(s)	326, 974, 1019
BmeRI	GACNNNNNGTC	1 cut(s)	361
BmgBI	CACGTC	1 cut(s)	248
BmgT120I	GGNCC	3 cut(s)	326, 974, 1019
BmiI	GGNNCC	1 cut(s)	530
BmrFI	CCNGG	1 cut(s)	150
BmsI	GCATC	7 cut(s)	567, 720, 889, 901, 1003, 1132, 1147
BmtI	GCTAGC	1 cut(s)	1032
BpiI	GAAGAC	1 cut(s)	360
BpmI	CTGGAG	2 cut(s)	441, 1082
BpuEI	CTTGAG	1 cut(s)	46
BsaI	GGTCTC	1 cut(s)	508
BsaJI	CCNNGG	1 cut(s)	301
Bsc4I	CCNNNNNNNGG	6 cut(s)	26, 50, 379, 525, 547, 971
Bse3DI	GCAATG	2 cut(s)	738, 966
BseBI	CCWGG	1 cut(s)	150
BseDI	CCNNGG	1 cut(s)	301
BseGI	GGATG	1 cut(s)	556
BseLI	CCNNNNNNNGG	6 cut(s)	26, 50, 379, 525, 547, 971
BseMI	GCAATG	2 cut(s)	738, 966
BseMII	CTCAG	1 cut(s)	1124
BseSI	GKGCMC	1 cut(s)	253
BseXI	GCAGC	8 cut(s)	439, 620, 694, 1129, 1132, 1147, 1201, 1216
BsgI	GTGCAG	1 cut(s)	1062
BshFI	GGCC	2 cut(s)	128, 954
BshNI	GGYRCC	1 cut(s)	528
BslI	CCNNNNNNNGG	6 cut(s)	26, 50, 379, 525, 547, 971
BsmAI	GTCTC	4 cut(s)	21, 338, 508, 1257
BsmI	GAATGC	1 cut(s)	216
BsnI	GGCC	2 cut(s)	128, 954
Bso31I	GGTCTC	1 cut(s)	508
Bsp1286I	GDGCHC	1 cut(s)	253
Bsp143I	GATC	3 cut(s)	554, 664, 684
BspACI	CCGC	2 cut(s)	470, 733
BspANI	GGCC	2 cut(s)	128, 954
BspCNI	CTCAG	1 cut(s)	1123
BspHI	TCATGA	2 cut(s)	196, 508
BspLI	GGNNCC	1 cut(s)	530
BspMAI	CTGCAG	1 cut(s)	145
BspOI	GCTAGC	1 cut(s)	1032
BspPI	GGATC	3 cut(s)	562, 659, 692
BspT107I	GGYRCC	1 cut(s)	528
BspTNI	GGTCTC	1 cut(s)	508
BsrBI	CCGCTC	1 cut(s)	470
BsrDI	GCAATG	2 cut(s)	738, 966
BssECI	CCNNGG	1 cut(s)	301
BssMI	GATC	3 cut(s)	554, 664, 684
BssT1I	CCWWGG	1 cut(s)	301
Bst2UI	CCWGG	1 cut(s)	150
Bst6I	CTCTTC	2 cut(s)	106, 591
BstC8I	GCNNGC	3 cut(s)	56, 866, 1030
BstDEI	CTNAG	1 cut(s)	1110
BstF5I	GGATG	1 cut(s)	556
BstHHI	GCGC	2 cut(s)	25, 864
BstKTI	GATC	3 cut(s)	557, 667, 687
BstMAI	GTCTC	4 cut(s)	21, 338, 508, 1257
BstMBI	GATC	3 cut(s)	554, 664, 684
BstMWI	GCNNNNNNNGC	6 cut(s)	134, 410, 449, 458, 467, 632
BstNI	CCWGG	1 cut(s)	150
BstNSI	RCATGY	1 cut(s)	1171
BstSCI	CCNGG	1 cut(s)	148
BstSFI	CTRYAG	2 cut(s)	141, 483
BstSLI	GKGCMC	1 cut(s)	253
BstV1I	GCAGC	8 cut(s)	439, 620, 694, 1129, 1132, 1147, 1201, 1216
BstV2I	GAAGAC	1 cut(s)	360
BstX2I	RGATCY	1 cut(s)	684
BstYI	RGATCY	1 cut(s)	684
BsuRI	GGCC	2 cut(s)	128, 954
BtrI	CACGTC	1 cut(s)	248
BtsCI	GGATG	1 cut(s)	556
BtsIMutI	CAGTG	2 cut(s)	174, 914
Cac8I	GCNNGC	3 cut(s)	56, 866, 1030
CaiI	CAGNNNCTG	2 cut(s)	440, 937
CciI	TCATGA	2 cut(s)	196, 508
CfoI	GCGC	2 cut(s)	25, 864
Cfr13I	GGNCC	3 cut(s)	326, 974, 1019
CseI	GACGC	1 cut(s)	788
CsiI	ACCWGGT	1 cut(s)	148
Csp6I	GTAC	2 cut(s)	370, 736
CviAII	CATG	8 cut(s)	26, 197, 499, 509, 628, 1060, 1168, 1246
CviQI	GTAC	2 cut(s)	370, 736
DdeI	CTNAG	1 cut(s)	1110
DpnI	GATC	3 cut(s)	556, 666, 686
DpnII	GATC	3 cut(s)	554, 664, 684
DriI	GACNNNNNGTC	1 cut(s)	361
EaeI	YGGCCR	1 cut(s)	952
Eam1104I	CTCTTC	2 cut(s)	106, 591
Eam1105I	GACNNNNNGTC	1 cut(s)	361
EarI	CTCTTC	2 cut(s)	106, 591
Eco130I	CCWWGG	1 cut(s)	301
Eco31I	GGTCTC	1 cut(s)	508
Eco47I	GGWCC	3 cut(s)	326, 974, 1019
EcoRII	CCWGG	1 cut(s)	148
EcoT14I	CCWWGG	1 cut(s)	301
ErhI	CCWWGG	1 cut(s)	301
FaeI	CATG	8 cut(s)	29, 200, 502, 512, 631, 1063, 1171, 1249
FalI	AAGNNNNNCTT	2 cut(s)	888, 920
FatI	CATG	8 cut(s)	25, 196, 498, 508, 627, 1059, 1167, 1245
Fnu4HI	GCNGC	8 cut(s)	453, 609, 708, 1118, 1121, 1136, 1190, 1205
FokI	GGATG	1 cut(s)	563
Fsp4HI	GCNGC	8 cut(s)	453, 609, 708, 1118, 1121, 1136, 1190, 1205
FspBI	CTAG	2 cut(s)	1023, 1029
FspI	TGCGCA	1 cut(s)	24
GlaI	GCGC	2 cut(s)	24, 863
GluI	GCNGC	8 cut(s)	453, 609, 708, 1118, 1121, 1136, 1190, 1205
GsuI	CTGGAG	2 cut(s)	441, 1082
HaeIII	GGCC	2 cut(s)	128, 954
HgaI	GACGC	1 cut(s)	788
HhaI	GCGC	2 cut(s)	25, 864
Hin1II	CATG	8 cut(s)	29, 200, 502, 512, 631, 1063, 1171, 1249
Hin6I	GCGC	2 cut(s)	23, 862
HinP1I	GCGC	2 cut(s)	23, 862
HincII	GTYRAC	1 cut(s)	1285
HindII	GTYRAC	1 cut(s)	1285
HindIII	AAGCTT	1 cut(s)	641
HinfI	GANTC	3 cut(s)	179, 614, 805
HphI	GGTGA	2 cut(s)	41, 99
Hpy166II	GTNNAC	6 cut(s)	38, 174, 851, 889, 974, 1285
Hpy188I	TCNGA	7 cut(s)	259, 340, 595, 649, 765, 948, 1113
Hpy188III	TCNNGA	5 cut(s)	197, 265, 275, 509, 1099
Hpy8I	GTNNAC	6 cut(s)	38, 174, 851, 889, 974, 1285
HpyAV	CCTTC	3 cut(s)	26, 281, 339
HpyCH4IV	ACGT	2 cut(s)	247, 673
HpyF10VI	GCNNNNNNNGC	6 cut(s)	134, 410, 449, 458, 467, 632
HpyF3I	CTNAG	1 cut(s)	1110
HpySE526I	ACGT	2 cut(s)	247, 673
Hsp92II	CATG	8 cut(s)	29, 200, 502, 512, 631, 1063, 1171, 1249
HspAI	GCGC	2 cut(s)	23, 862
Kzo9I	GATC	3 cut(s)	554, 664, 684
LmnI	GCTCC	1 cut(s)	460
Lsp1109I	GCAGC	8 cut(s)	439, 620, 694, 1129, 1132, 1147, 1201, 1216
LweI	GCATC	7 cut(s)	567, 720, 889, 901, 1003, 1132, 1147
MabI	ACCWGGT	1 cut(s)	148
MaeI	CTAG	2 cut(s)	1023, 1029
MaeII	ACGT	2 cut(s)	247, 673
MaeIII	GTNAC	5 cut(s)	161, 265, 296, 472, 818
MalI	GATC	3 cut(s)	556, 666, 686
MbiI	CCGCTC	1 cut(s)	470
MboI	GATC	3 cut(s)	554, 664, 684
MboII	GAAGA	5 cut(s)	93, 365, 387, 608, 739
MfeI	CAATTG	1 cut(s)	800
MflI	RGATCY	1 cut(s)	684
MhlI	GDGCHC	1 cut(s)	253
MlsI	TGGCCA	1 cut(s)	954
MluCI	AATT	8 cut(s)	233, 386, 391, 660, 800, 927, 1037, 1085
MluNI	TGGCCA	1 cut(s)	954
MlyI	GAGTC	1 cut(s)	799
MnlI	CCTC	6 cut(s)	109, 139, 343, 675, 916, 1273
Mox20I	TGGCCA	1 cut(s)	954
MscI	TGGCCA	1 cut(s)	954
MseI	TTAA	1 cut(s)	906
MslI	CAYNNNNRTG	1 cut(s)	246
Msp20I	TGGCCA	1 cut(s)	954
MspA1I	CMGCKG	3 cut(s)	452, 611, 707
MspR9I	CCNGG	1 cut(s)	150
MunI	CAATTG	1 cut(s)	800
Mva1269I	GAATGC	1 cut(s)	216
MvaI	CCWGG	1 cut(s)	150
MwoI	GCNNNNNNNGC	6 cut(s)	134, 410, 449, 458, 467, 632
NdeII	GATC	3 cut(s)	554, 664, 684
NheI	GCTAGC	1 cut(s)	1028
NlaIII	CATG	8 cut(s)	29, 200, 502, 512, 631, 1063, 1171, 1249
NlaIV	GGNNCC	1 cut(s)	530
NmuCI	GTSAC	5 cut(s)	161, 265, 296, 472, 818
NsbI	TGCGCA	1 cut(s)	24
NspI	RCATGY	1 cut(s)	1171
PagI	TCATGA	2 cut(s)	196, 508
PctI	GAATGC	1 cut(s)	216
PfeI	GAWTC	2 cut(s)	179, 614
PflMI	CCANNNNNTGG	2 cut(s)	547, 971
PkrI	GCNGC	8 cut(s)	454, 610, 709, 1119, 1122, 1137, 1191, 1206
PleI	GAGTC	1 cut(s)	799
PpsI	GAGTC	1 cut(s)	799
Psp6I	CCWGG	1 cut(s)	148
PspGI	CCWGG	1 cut(s)	148
PspN4I	GGNNCC	1 cut(s)	530
PspPI	GGNCC	3 cut(s)	326, 974, 1019
PstI	CTGCAG	1 cut(s)	145
PstNI	CAGNNNCTG	2 cut(s)	440, 937
PsuI	RGATCY	1 cut(s)	684
PvuII	CAGCTG	3 cut(s)	452, 611, 707
RsaI	GTAC	2 cut(s)	371, 737
RsaNI	GTAC	2 cut(s)	370, 736
RseI	CAYNNNNRTG	1 cut(s)	246
SaqAI	TTAA	1 cut(s)	906
SatI	GCNGC	8 cut(s)	453, 609, 708, 1118, 1121, 1136, 1190, 1205
Sau3AI	GATC	3 cut(s)	554, 664, 684
Sau96I	GGNCC	3 cut(s)	326, 974, 1019
SchI	GAGTC	1 cut(s)	799
ScrFI	CCNGG	1 cut(s)	150
SduI	GDGCHC	1 cut(s)	253
SexAI	ACCWGGT	1 cut(s)	148
SfaNI	GCATC	7 cut(s)	567, 720, 889, 901, 1003, 1132, 1147
SfcI	CTRYAG	2 cut(s)	141, 483
SinI	GGWCC	3 cut(s)	326, 974, 1019
SmiMI	CAYNNNNRTG	1 cut(s)	246
SmlI	CTYRAG	1 cut(s)	61
SmoI	CTYRAG	1 cut(s)	61
Sse9I	AATT	8 cut(s)	233, 386, 391, 660, 800, 927, 1037, 1085
SsiI	CCGC	2 cut(s)	470, 733
SspMI	CTAG	2 cut(s)	1023, 1029
StyD4I	CCNGG	1 cut(s)	148
StyI	CCWWGG	1 cut(s)	301
TaiI	ACGT	2 cut(s)	250, 676
TaqI	TCGA	1 cut(s)	587
TasI	AATT	8 cut(s)	233, 386, 391, 660, 800, 927, 1037, 1085
TfiI	GAWTC	2 cut(s)	179, 614
Tru1I	TTAA	1 cut(s)	906
Tru9I	TTAA	1 cut(s)	906
TscAI	CASTG	2 cut(s)	181, 921
TseFI	GTSAC	5 cut(s)	161, 265, 296, 472, 818
TseI	GCWGC	8 cut(s)	452, 608, 707, 1117, 1120, 1135, 1189, 1204
Tsp45I	GTSAC	5 cut(s)	161, 265, 296, 472, 818
TspDTI	ATGAA	5 cut(s)	93, 321, 387, 497, 998
TspGWI	ACGGA	1 cut(s)	180
TspRI	CASTG	2 cut(s)	181, 921
Van91I	CCANNNNNTGG	2 cut(s)	547, 971
VpaK11BI	GGWCC	3 cut(s)	326, 974, 1019
XapI	RAATTY	2 cut(s)	386, 927
XceI	RCATGY	1 cut(s)	1171
XcmI	CCANNNNNNNNNTGG	1 cut(s)	548
XspI	CTAG	2 cut(s)	1023, 1029

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.