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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G06210 AT3G06210 AT5G18980 AT5G18980 AT5G18980 |
| fragaria_vesca | FvH4_4g14210 |
| malus_domestica | MD12G1098300.v1.1 MD13G1180800.v1.1 MD16G1181500.v1.1 |
| prunus_persica | Prupe.1G148900_v2.0.a1 |
| pyrus_communis | pycom13g15600 pycom16g15230 |
| rosa_chinensis | RchiOBHm_Chr4g0418921 RchiOBHm_Chr4g0418961 RchiOBHm_Chr4g0418981 |
| rosa_laevigata | RLG00000007835 RLG00000007838 |
| rosa_multiflora | Rmu_sc0000935.1_g000037 Rmu_sc0000935.1_g000062 Rmu_sc0001556.1_g000003 |
| rosa_roxburghii | Rroxscaffold_5G00362050 |
| rosa_rugosa | Rorug04G0155600 Rorug04G0155700 |
| rosa_samantha | Rh4AG216900 Rh4AG217400 Rh4AG217700 Rh4BG212600 Rh4BG212700 Rh4BG213300 Rh4CG228700 Rh4CG229500 Rh4CG229600 Rh4DG215800 Rh4DG216200 Rh4DG216300 |
| rosa_wichuraiana | Rw4G018550 Rw4G018590 Rw4G018600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 538 |
| AciI | CCGC | 3 cut(s) | 217, 294, 1639 |
| AclI | AACGTT | 1 cut(s) | 585 |
| AclWI | GGATC | 2 cut(s) | 440, 1190 |
| AcsI | RAATTY | 6 cut(s) | 316, 1054, 1086, 1150, 1284, 2354 |
| AcuI | CTGAAG | 5 cut(s) | 47, 129, 677, 693, 1595 |
| AcvI | CACGTG | 1 cut(s) | 1448 |
| AfaI | GTAC | 3 cut(s) | 875, 2261, 2440 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1831, 2065 |
| AflII | CTTAAG | 1 cut(s) | 2096 |
| AflIII | ACRYGT | 1 cut(s) | 2155 |
| AhlI | ACTAGT | 2 cut(s) | 116, 1880 |
| AjnI | CCWGG | 1 cut(s) | 1288 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2124, 2156 |
| Alw21I | GWGCWC | 6 cut(s) | 187, 231, 1803, 2033, 2121, 2385 |
| Alw26I | GTCTC | 6 cut(s) | 71, 658, 768, 1030, 2178, 2393 |
| Alw44I | GTGCAC | 2 cut(s) | 183, 2029 |
| AlwI | GGATC | 2 cut(s) | 440, 1190 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 70, 152, 245, 1567 |
| Ama87I | CYCGRG | 1 cut(s) | 2384 |
| AoxI | GGCC | 5 cut(s) | 247, 273, 825, 1420, 1486 |
| ApaLI | GTGCAC | 2 cut(s) | 183, 2029 |
| ApeKI | GCWGC | 9 cut(s) | 46, 239, 397, 800, 1069, 1226, 1717, 2006, 2081 |
| ApoI | RAATTY | 6 cut(s) | 316, 1054, 1086, 1150, 1284, 2354 |
| AseI | ATTAAT | 1 cut(s) | 555 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 460 |
| AspLEI | GCGC | 1 cut(s) | 2086 |
| AspS9I | GGNCC | 5 cut(s) | 158, 273, 414, 928, 1039 |
| AsuC2I | CCSGG | 1 cut(s) | 1114 |
| AsuHPI | GGTGA | 7 cut(s) | 328, 770, 892, 919, 1085, 1606, 1712 |
| AsuNHI | GCTAGC | 1 cut(s) | 2311 |
| AvaI | CYCGRG | 1 cut(s) | 2384 |
| AvaII | GGWCC | 4 cut(s) | 158, 414, 928, 1039 |
| BaeGI | GKGCMC | 2 cut(s) | 187, 2033 |
| BanII | GRGCYC | 2 cut(s) | 1112, 2385 |
| BbrPI | CACGTG | 1 cut(s) | 1448 |
| BbsI | GAAGAC | 1 cut(s) | 866 |
| Bbv12I | GWGCWC | 6 cut(s) | 187, 231, 1803, 2033, 2121, 2385 |
| BbvCI | CCTCAGC | 1 cut(s) | 1521 |
| BbvI | GCAGC | 9 cut(s) | 33, 251, 409, 787, 1081, 1213, 1704, 1993, 2093 |
| BccI | CCATC | 7 cut(s) | 347, 425, 847, 998, 1009, 1135, 2365 |
| BciT130I | CCWGG | 1 cut(s) | 1290 |
| BclI | TGATCA | 1 cut(s) | 1381 |
| BcnI | CCSGG | 1 cut(s) | 1114 |
| BcoDI | GTCTC | 6 cut(s) | 71, 658, 768, 1030, 2178, 2393 |
| BcuI | ACTAGT | 2 cut(s) | 116, 1880 |
| BfmI | CTRYAG | 4 cut(s) | 18, 47, 546, 1227 |
| BfoI | RGCGCY | 1 cut(s) | 2087 |
| BfrI | CTTAAG | 1 cut(s) | 2096 |
| BisI | GCNGC | 9 cut(s) | 47, 240, 398, 801, 1070, 1227, 1718, 2007, 2082 |
| BlpI | GCTNAGC | 1 cut(s) | 1560 |
| BlsI | GCNGC | 9 cut(s) | 48, 241, 399, 802, 1071, 1228, 1719, 2008, 2083 |
| Bme1390I | CCNGG | 2 cut(s) | 1114, 1290 |
| Bme18I | GGWCC | 4 cut(s) | 158, 414, 928, 1039 |
| BmeT110I | CYCGRG | 1 cut(s) | 2384 |
| BmgT120I | GGNCC | 5 cut(s) | 158, 273, 414, 928, 1039 |
| BmiI | GGNNCC | 2 cut(s) | 380, 791 |
| BmrFI | CCNGG | 2 cut(s) | 1114, 1290 |
| BmsI | GCATC | 5 cut(s) | 409, 492, 958, 1717, 2007 |
| BmtI | GCTAGC | 1 cut(s) | 2315 |
| BpiI | GAAGAC | 1 cut(s) | 866 |
| BpmI | CTGGAG | 2 cut(s) | 2160, 2229 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1521 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1560 |
| BpuEI | CTTGAG | 7 cut(s) | 410, 592, 1321, 1520, 1711, 1787, 2048 |
| BpuMI | CCSGG | 1 cut(s) | 1114 |
| BsaAI | YACGTR | 1 cut(s) | 1448 |
| BsaI | GGTCTC | 3 cut(s) | 71, 1030, 2393 |
| BsaJI | CCNNGG | 5 cut(s) | 250, 276, 822, 828, 1112 |
| BsaWI | WCCGGW | 1 cut(s) | 792 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 908, 938 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1831, 2065 |
| Bse1I | ACTGG | 5 cut(s) | 250, 512, 534, 1251, 1761 |
| Bse3DI | GCAATG | 3 cut(s) | 456, 1302, 1908 |
| BseBI | CCWGG | 1 cut(s) | 1290 |
| BseDI | CCNNGG | 5 cut(s) | 250, 276, 822, 828, 1112 |
| BseGI | GGATG | 3 cut(s) | 1708, 2328, 2376 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1831, 2065 |
| BseMI | GCAATG | 3 cut(s) | 456, 1302, 1908 |
| BseMII | CTCAG | 7 cut(s) | 62, 414, 633, 797, 1512, 1574, 2243 |
| BseNI | ACTGG | 5 cut(s) | 250, 512, 534, 1251, 1761 |
| BseRI | GAGGAG | 1 cut(s) | 1538 |
| BseSI | GKGCMC | 2 cut(s) | 187, 2033 |
| BseXI | GCAGC | 9 cut(s) | 33, 251, 409, 787, 1081, 1213, 1704, 1993, 2093 |
| BseYI | CCCAGC | 3 cut(s) | 428, 1250, 1886 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1583 |
| BshFI | GGCC | 5 cut(s) | 249, 275, 827, 1422, 1488 |
| BsiEI | CGRYCG | 1 cut(s) | 1583 |
| BsiHKAI | GWGCWC | 6 cut(s) | 187, 231, 1803, 2033, 2121, 2385 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2384 |
| BsiSI | CCGG | 2 cut(s) | 793, 1114 |
| BslFI | GGGAC | 2 cut(s) | 373, 611 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1831, 2065 |
| BsmAI | GTCTC | 6 cut(s) | 71, 658, 768, 1030, 2178, 2393 |
| BsmFI | GGGAC | 2 cut(s) | 373, 611 |
| BsmI | GAATGC | 1 cut(s) | 39 |
| BsnI | GGCC | 5 cut(s) | 249, 275, 827, 1422, 1488 |
| Bso31I | GGTCTC | 3 cut(s) | 71, 1030, 2393 |
| BsoBI | CYCGRG | 1 cut(s) | 2384 |
| Bsp1286I | GDGCHC | 7 cut(s) | 187, 231, 1112, 1803, 2033, 2121, 2385 |
| Bsp143I | GATC | 6 cut(s) | 432, 1195, 1381, 1450, 1500, 1580 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1560 |
| BspACI | CCGC | 3 cut(s) | 217, 294, 1639 |
| BspANI | GGCC | 5 cut(s) | 249, 275, 827, 1422, 1488 |
| BspCNI | CTCAG | 7 cut(s) | 63, 415, 632, 798, 1513, 1573, 2244 |
| BspLI | GGNNCC | 2 cut(s) | 380, 791 |
| BspMAI | CTGCAG | 4 cut(s) | 22, 51, 550, 1231 |
| BspOI | GCTAGC | 1 cut(s) | 2315 |
| BspPI | GGATC | 2 cut(s) | 440, 1190 |
| BspQI | GCTCTTC | 1 cut(s) | 2109 |
| BspTI | CTTAAG | 1 cut(s) | 2096 |
| BspTNI | GGTCTC | 3 cut(s) | 71, 1030, 2393 |
| BsrDI | GCAATG | 3 cut(s) | 456, 1302, 1908 |
| BsrI | ACTGG | 5 cut(s) | 250, 512, 534, 1251, 1761 |
| BssECI | CCNNGG | 5 cut(s) | 250, 276, 822, 828, 1112 |
| BssMI | GATC | 6 cut(s) | 432, 1195, 1381, 1450, 1500, 1580 |
| BssT1I | CCWWGG | 3 cut(s) | 250, 822, 828 |
| Bst2UI | CCWGG | 1 cut(s) | 1290 |
| Bst6I | CTCTTC | 5 cut(s) | 897, 1592, 1755, 2109, 2175 |
| BstAFI | CTTAAG | 1 cut(s) | 2096 |
| BstBAI | YACGTR | 1 cut(s) | 1448 |
| BstC8I | GCNNGC | 3 cut(s) | 1424, 2313, 2456 |
| BstDEI | CTNAG | 7 cut(s) | 71, 423, 619, 806, 1521, 1560, 2252 |
| BstDSI | CCRYGG | 1 cut(s) | 276 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1829 |
| BstF5I | GGATG | 3 cut(s) | 1708, 2328, 2376 |
| BstH2I | RGCGCY | 1 cut(s) | 2087 |
| BstHHI | GCGC | 1 cut(s) | 2086 |
| BstKTI | GATC | 6 cut(s) | 435, 1198, 1384, 1453, 1503, 1583 |
| BstMAI | GTCTC | 6 cut(s) | 71, 658, 768, 1030, 2178, 2393 |
| BstMBI | GATC | 6 cut(s) | 432, 1195, 1381, 1450, 1500, 1580 |
| BstMCI | CGRYCG | 1 cut(s) | 1583 |
| BstNI | CCWGG | 1 cut(s) | 1290 |
| BstNSI | RCATGY | 4 cut(s) | 1350, 1520, 2159, 2393 |
| BstSCI | CCNGG | 2 cut(s) | 1112, 1288 |
| BstSFI | CTRYAG | 4 cut(s) | 18, 47, 546, 1227 |
| BstSLI | GKGCMC | 2 cut(s) | 187, 2033 |
| BstV1I | GCAGC | 9 cut(s) | 33, 251, 409, 787, 1081, 1213, 1704, 1993, 2093 |
| BstV2I | GAAGAC | 1 cut(s) | 866 |
| BsuRI | GGCC | 5 cut(s) | 249, 275, 827, 1422, 1488 |
| BtgI | CCRYGG | 1 cut(s) | 276 |
| BtsCI | GGATG | 3 cut(s) | 1708, 2328, 2376 |
| BtsI | GCAGTG | 1 cut(s) | 231 |
| BtsIMutI | CAGTG | 9 cut(s) | 91, 187, 231, 420, 777, 1366, 1754, 2044, 2448 |
| Cac8I | GCNNGC | 3 cut(s) | 1424, 2313, 2456 |
| CaiI | CAGNNNCTG | 4 cut(s) | 70, 152, 245, 1567 |
| CfoI | GCGC | 1 cut(s) | 2086 |
| Cfr13I | GGNCC | 5 cut(s) | 158, 273, 414, 928, 1039 |
| CseI | GACGC | 1 cut(s) | 1579 |
| Csp6I | GTAC | 3 cut(s) | 874, 2260, 2439 |
| CviQI | GTAC | 3 cut(s) | 874, 2260, 2439 |
| DdeI | CTNAG | 7 cut(s) | 71, 423, 619, 806, 1521, 1560, 2252 |
| DpnI | GATC | 6 cut(s) | 434, 1197, 1383, 1452, 1502, 1582 |
| DpnII | GATC | 6 cut(s) | 432, 1195, 1381, 1450, 1500, 1580 |
| Eam1104I | CTCTTC | 5 cut(s) | 897, 1592, 1755, 2109, 2175 |
| EarI | CTCTTC | 5 cut(s) | 897, 1592, 1755, 2109, 2175 |
| EciI | GGCGGA | 1 cut(s) | 206 |
| Ecl136II | GAGCTC | 1 cut(s) | 2383 |
| Eco130I | CCWWGG | 3 cut(s) | 250, 822, 828 |
| Eco147I | AGGCCT | 2 cut(s) | 1422, 1488 |
| Eco24I | GRGCYC | 2 cut(s) | 1112, 2385 |
| Eco31I | GGTCTC | 3 cut(s) | 71, 1030, 2393 |
| Eco47I | GGWCC | 4 cut(s) | 158, 414, 928, 1039 |
| Eco53kI | GAGCTC | 1 cut(s) | 2383 |
| Eco57I | CTGAAG | 5 cut(s) | 47, 129, 677, 693, 1595 |
| Eco72I | CACGTG | 1 cut(s) | 1448 |
| Eco88I | CYCGRG | 1 cut(s) | 2384 |
| EcoICRI | GAGCTC | 1 cut(s) | 2383 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1829 |
| EcoRI | GAATTC | 1 cut(s) | 1284 |
| EcoRII | CCWGG | 1 cut(s) | 1288 |
| EcoT14I | CCWWGG | 3 cut(s) | 250, 822, 828 |
| EcoT38I | GRGCYC | 2 cut(s) | 1112, 2385 |
| ErhI | CCWWGG | 3 cut(s) | 250, 822, 828 |
| FaqI | GGGAC | 2 cut(s) | 373, 611 |
| FauNDI | CATATG | 1 cut(s) | 640 |
| FbaI | TGATCA | 1 cut(s) | 1381 |
| FblI | GTMKAC | 1 cut(s) | 538 |
| Fnu4HI | GCNGC | 9 cut(s) | 47, 240, 398, 801, 1070, 1227, 1718, 2007, 2082 |
| FokI | GGATG | 3 cut(s) | 1695, 2335, 2383 |
| FriOI | GRGCYC | 2 cut(s) | 1112, 2385 |
| Fsp4HI | GCNGC | 9 cut(s) | 47, 240, 398, 801, 1070, 1227, 1718, 2007, 2082 |
| GlaI | GCGC | 1 cut(s) | 2085 |
| GluI | GCNGC | 9 cut(s) | 47, 240, 398, 801, 1070, 1227, 1718, 2007, 2082 |
| GsaI | CCCAGC | 3 cut(s) | 432, 1254, 1890 |
| GsuI | CTGGAG | 2 cut(s) | 2160, 2229 |
| HaeII | RGCGCY | 1 cut(s) | 2087 |
| HaeIII | GGCC | 5 cut(s) | 249, 275, 827, 1422, 1488 |
| HapII | CCGG | 2 cut(s) | 793, 1114 |
| HgaI | GACGC | 1 cut(s) | 1579 |
| HhaI | GCGC | 1 cut(s) | 2086 |
| Hin6I | GCGC | 1 cut(s) | 2084 |
| HinP1I | GCGC | 1 cut(s) | 2084 |
| HincII | GTYRAC | 1 cut(s) | 2505 |
| HindII | GTYRAC | 1 cut(s) | 2505 |
| HindIII | AAGCTT | 2 cut(s) | 837, 2419 |
| HinfI | GANTC | 5 cut(s) | 361, 1301, 1982, 2183, 2248 |
| HpaI | GTTAAC | 1 cut(s) | 2505 |
| HpaII | CCGG | 2 cut(s) | 793, 1114 |
| HphI | GGTGA | 7 cut(s) | 328, 770, 892, 919, 1085, 1606, 1712 |
| Hpy166II | GTNNAC | 7 cut(s) | 185, 539, 893, 910, 1404, 2031, 2505 |
| Hpy8I | GTNNAC | 7 cut(s) | 185, 539, 893, 910, 1404, 2031, 2505 |
| HpyAV | CCTTC | 7 cut(s) | 17, 26, 71, 350, 644, 948, 1835 |
| HpyCH4IV | ACGT | 4 cut(s) | 585, 1406, 1447, 2258 |
| HpyF3I | CTNAG | 7 cut(s) | 71, 423, 619, 806, 1521, 1560, 2252 |
| HpySE526I | ACGT | 4 cut(s) | 585, 1406, 1447, 2258 |
| HspAI | GCGC | 1 cut(s) | 2084 |
| Ksp22I | TGATCA | 1 cut(s) | 1381 |
| KspAI | GTTAAC | 1 cut(s) | 2505 |
| Kzo9I | GATC | 6 cut(s) | 432, 1195, 1381, 1450, 1500, 1580 |
| LguI | GCTCTTC | 1 cut(s) | 2109 |
| LmnI | GCTCC | 6 cut(s) | 378, 480, 1079, 1323, 2155, 2380 |
| Lsp1109I | GCAGC | 9 cut(s) | 33, 251, 409, 787, 1081, 1213, 1704, 1993, 2093 |
| LweI | GCATC | 5 cut(s) | 409, 492, 958, 1717, 2007 |
| MaeII | ACGT | 4 cut(s) | 585, 1406, 1447, 2258 |
| MaeIII | GTNAC | 4 cut(s) | 1388, 1549, 1858, 2212 |
| MalI | GATC | 6 cut(s) | 434, 1197, 1383, 1452, 1502, 1582 |
| MboI | GATC | 6 cut(s) | 432, 1195, 1381, 1450, 1500, 1580 |
| MfeI | CAATTG | 1 cut(s) | 1589 |
| MhlI | GDGCHC | 7 cut(s) | 187, 231, 1112, 1803, 2033, 2121, 2385 |
| MlyI | GAGTC | 2 cut(s) | 355, 2192 |
| MmeI | TCCRAC | 3 cut(s) | 906, 2122, 2394 |
| MroXI | GAANNNNTTC | 1 cut(s) | 460 |
| MseI | TTAA | 5 cut(s) | 164, 555, 2097, 2277, 2504 |
| MslI | CAYNNNNRTG | 1 cut(s) | 753 |
| MspCI | CTTAAG | 1 cut(s) | 2096 |
| MspI | CCGG | 2 cut(s) | 793, 1114 |
| MspR9I | CCNGG | 2 cut(s) | 1114, 1290 |
| MunI | CAATTG | 1 cut(s) | 1589 |
| Mva1269I | GAATGC | 1 cut(s) | 39 |
| MvaI | CCWGG | 1 cut(s) | 1290 |
| NciI | CCSGG | 1 cut(s) | 1114 |
| NdeI | CATATG | 1 cut(s) | 640 |
| NdeII | GATC | 6 cut(s) | 432, 1195, 1381, 1450, 1500, 1580 |
| NheI | GCTAGC | 1 cut(s) | 2311 |
| NlaIV | GGNNCC | 2 cut(s) | 380, 791 |
| NmeAIII | GCCGAG | 1 cut(s) | 2434 |
| NmuCI | GTSAC | 1 cut(s) | 1858 |
| NspI | RCATGY | 4 cut(s) | 1350, 1520, 2159, 2393 |
| PaeR7I | CTCGAG | 1 cut(s) | 2384 |
| PceI | AGGCCT | 2 cut(s) | 1422, 1488 |
| PciI | ACATGT | 1 cut(s) | 2155 |
| PciSI | GCTCTTC | 1 cut(s) | 2109 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2241 |
| PctI | GAATGC | 1 cut(s) | 39 |
| PdmI | GAANNNNTTC | 1 cut(s) | 460 |
| PfeI | GAWTC | 3 cut(s) | 1301, 1982, 2248 |
| PkrI | GCNGC | 9 cut(s) | 48, 241, 399, 802, 1071, 1228, 1719, 2008, 2083 |
| Ple19I | CGATCG | 1 cut(s) | 1583 |
| PleI | GAGTC | 2 cut(s) | 355, 2191 |
| PmaCI | CACGTG | 1 cut(s) | 1448 |
| PmlI | CACGTG | 1 cut(s) | 1448 |
| PpsI | GAGTC | 2 cut(s) | 355, 2191 |
| Ppu21I | YACGTR | 1 cut(s) | 1448 |
| PscI | ACATGT | 1 cut(s) | 2155 |
| PshBI | ATTAAT | 1 cut(s) | 555 |
| Psp124BI | GAGCTC | 1 cut(s) | 2385 |
| Psp1406I | AACGTT | 1 cut(s) | 585 |
| Psp6I | CCWGG | 1 cut(s) | 1288 |
| PspCI | CACGTG | 1 cut(s) | 1448 |
| PspFI | CCCAGC | 3 cut(s) | 428, 1250, 1886 |
| PspGI | CCWGG | 1 cut(s) | 1288 |
| PspN4I | GGNNCC | 2 cut(s) | 380, 791 |
| PspPI | GGNCC | 5 cut(s) | 158, 273, 414, 928, 1039 |
| PspXI | VCTCGAGB | 1 cut(s) | 2384 |
| PstI | CTGCAG | 4 cut(s) | 22, 51, 550, 1231 |
| PstNI | CAGNNNCTG | 4 cut(s) | 70, 152, 245, 1567 |
| PvuI | CGATCG | 1 cut(s) | 1583 |
| RsaI | GTAC | 3 cut(s) | 875, 2261, 2440 |
| RsaNI | GTAC | 3 cut(s) | 874, 2260, 2439 |
| RseI | CAYNNNNRTG | 1 cut(s) | 753 |
| SacI | GAGCTC | 1 cut(s) | 2385 |
| SapI | GCTCTTC | 1 cut(s) | 2109 |
| SaqAI | TTAA | 5 cut(s) | 164, 555, 2097, 2277, 2504 |
| SatI | GCNGC | 9 cut(s) | 47, 240, 398, 801, 1070, 1227, 1718, 2007, 2082 |
| Sau3AI | GATC | 6 cut(s) | 432, 1195, 1381, 1450, 1500, 1580 |
| Sau96I | GGNCC | 5 cut(s) | 158, 273, 414, 928, 1039 |
| SchI | GAGTC | 2 cut(s) | 355, 2192 |
| ScrFI | CCNGG | 2 cut(s) | 1114, 1290 |
| SduI | GDGCHC | 7 cut(s) | 187, 231, 1112, 1803, 2033, 2121, 2385 |
| SfaNI | GCATC | 5 cut(s) | 409, 492, 958, 1717, 2007 |
| SfcI | CTRYAG | 4 cut(s) | 18, 47, 546, 1227 |
| Sfr274I | CTCGAG | 1 cut(s) | 2384 |
| SinI | GGWCC | 4 cut(s) | 158, 414, 928, 1039 |
| SlaI | CTCGAG | 1 cut(s) | 2384 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 753 |
| SmlI | CTYRAG | 9 cut(s) | 389, 571, 1336, 1535, 1690, 1802, 2063, 2096, 2384 |
| SmoI | CTYRAG | 9 cut(s) | 389, 571, 1336, 1535, 1690, 1802, 2063, 2096, 2384 |
| SpeI | ACTAGT | 2 cut(s) | 116, 1880 |
| SseBI | AGGCCT | 2 cut(s) | 1422, 1488 |
| SsiI | CCGC | 3 cut(s) | 217, 294, 1639 |
| SspI | AATATT | 2 cut(s) | 1633, 2347 |
| SstI | GAGCTC | 1 cut(s) | 2385 |
| StuI | AGGCCT | 2 cut(s) | 1422, 1488 |
| StyD4I | CCNGG | 2 cut(s) | 1112, 1288 |
| StyI | CCWWGG | 3 cut(s) | 250, 822, 828 |
| TaiI | ACGT | 4 cut(s) | 588, 1409, 1450, 2261 |
| TaqI | TCGA | 8 cut(s) | 123, 231, 445, 464, 947, 1176, 2244, 2385 |
| TaqII | GACCGA | 1 cut(s) | 95 |
| TatI | WGTACW | 1 cut(s) | 873 |
| TfiI | GAWTC | 3 cut(s) | 1301, 1982, 2248 |
| Tru1I | TTAA | 5 cut(s) | 164, 555, 2097, 2277, 2504 |
| Tru9I | TTAA | 5 cut(s) | 164, 555, 2097, 2277, 2504 |
| TscAI | CASTG | 9 cut(s) | 91, 187, 231, 427, 784, 1366, 1761, 2044, 2448 |
| TseFI | GTSAC | 1 cut(s) | 1858 |
| TseI | GCWGC | 9 cut(s) | 46, 239, 397, 800, 1069, 1226, 1717, 2006, 2081 |
| Tsp45I | GTSAC | 1 cut(s) | 1858 |
| TspDTI | ATGAA | 9 cut(s) | 256, 322, 460, 576, 749, 1218, 1299, 1368, 2342 |
| TspRI | CASTG | 9 cut(s) | 91, 187, 231, 427, 784, 1366, 1761, 2044, 2448 |
| Vha464I | CTTAAG | 1 cut(s) | 2096 |
| VneI | GTGCAC | 2 cut(s) | 183, 2029 |
| VpaK11BI | GGWCC | 4 cut(s) | 158, 414, 928, 1039 |
| VspI | ATTAAT | 1 cut(s) | 555 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1829 |
| XapI | RAATTY | 6 cut(s) | 316, 1054, 1086, 1150, 1284, 2354 |
| XceI | RCATGY | 4 cut(s) | 1350, 1520, 2159, 2393 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 645, 2410 |
| XhoI | CTCGAG | 1 cut(s) | 2384 |
| XmiI | GTMKAC | 1 cut(s) | 538 |
| XmnI | GAANNNNTTC | 1 cut(s) | 460 |