Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0009425

Physical Location & Seq

Genomic Coordinates Forward (+)

20170056 .. 20175278

Gene Structure 5223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1126500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2460 bp

ATGAGAGAGTTCATAATCCTCAGCTACTTCTCTTATTCTTCTTCTTCCTCCATTGCCACTCTTCCGAATCCCCATGCCGCCAACAACCACCACTCCACCAGACCCTACAAAGACAACACCAACAAACCCTTATCCCTCCCTCCCTCCAAATCCTCCCCTCCAATCTCCACCCTCCATTCCCGCCCCCCTCCCCTCTCCGCCGTCCGCTGGGACCCCAACAAAACCCACCTCTGCTACTTCGCCGACCTCGCCTCAAAACTCGCCCGTGACGGAAAGCTTCAGGATTTCGCCATGATTGTCGAAAGCGTCGTGCTTTCGGGCGTCAGGGGATCCGAGTTCACGGCGGCGCTCAGGGTTGAGTTGGTGGCGAAGGGCATTTCGGGGTTTTTGAAAGAGGGGAAGGTGGGGGTCGTTGTTGATGTGCTGAGTAAGGTTGATGAGCTCGGGGTTCCACCGTTGAAGCTGTTTGATGGGTACGCTATGGAGTTGCTGGGGAGACAGTGTCGCCGGCTTTTGAAATGTGGGCAAGTGCAGGAACTTGTTGAGCTCATGGACGTTCTTCAAGGTTTTCATTTCCCGATCAAAGAACTGCTGGAGCCATATGAAGTTATCAAAGTTTGTGTTGATAAACACTGCCCGAAATTGGCAATAAGGTATGCTTGTATTTTTCCACATGCGCATATTTTATTCTGCAACATTATGAATGAATTTGGAAAGAGAAGGGCGTTGGAGTCTGCTTTGACAGCATATGAAGCATCCAAGGAAAACCTGAGTGGTTCTAATATGTATGTCTATCGCACAATAATTGATGTATGTGGCATCTGCAAAGACTACATGAAATCTAGGTACATCTATGAGGACTTGCTCAAACAGAAGGTCACTCCGAATATTTATGTTTTCAACAGTCTCATGAATGTAAACGCACATGATTTGACCTACACATTCCATGTTTACAGGAGTATGAAGAATCTTGGCGTCAGAGCAGATATGGCATGTTATAATATCCTCTTAAAGGCATGTTGTCTTGCTGGGCGAGTTGATTTGGCACAGGATATTTACAGAGAAGTACAGCATTTGGAATCAACGGGAGTGTTGAAGTTGGATGTCTTCACGTACAGCACTATTGTAAAGGTCTTTTCAGATGCAAAATTGTGGCACATGGCTCTAAAAGTCAAAGAAGACATGCTATCTGCAGGTGTTATGCCTAATACAGTTACGTGGTCATCATTGATCAGCGCCTGTGCAAATGCAGGTCTTGTTGAGAAGGCAATTCAATTGTTTGAAGAGATGCTTCTGGCTGGCTCTGAACCTAATTCACAGTGTTTTAACATCCTTCTACATGCTTGTGTCGAGGCTTGCCAGTATGATAGGGCTTTTCGGCTTTTCCAGTCTTTGAAGAGCAAAAACTACAAAGGGCTTTCTTTCAAACCCACAACTACAACGTACAATACTATGATGAAGGCCTGTGGTACTGACTACTACCATGCACAAGCACTAATGGATGAGATGAGAACAATAGGTCTTTATCCTAATCAAATAAGCTGGTCGATTTTGGCTGATATCTGCGGAAGCTCAGGAAATGTCGATGGTGCTTTGCAGATTTTGACAAATATGCGTGCAGGTGGGATGAAACCTGATGTTGTTGCATATACTACAGCTATCAAGGTCTGTGTGGAAGGTGGAAATTTAGAGCTAGCATTGTCGCTGTTTGCAGAAATGAAAAAATATCAGATACGCCCAAATTTTGTGACATATAATACAATTCTGAGGGCTCGTAGTAGATACGGTTCTGTGAGCGAAGTGCAACAATGCCTGGCTATATACCGGGACATGCGGAATGCGGGTTACAAATCTAACGATCGTTTCCTAGAGCAACTGATTGAGGAGTGGTGTGAAGGAGTTATACAAGACAGCAATGCCAAACAAGGAGAGTTCAGTTCCCATGACAAAACTGACATAGGGAGACCTGGAAGTCTGCTGCTTGAAAAAGTTGCAGAACACTTGCAAAAGCATACTGCCGAAACCTTAGCAGTTGACCTTCAAGGACTGACAAAGGTTGAAGCTCGGATTGTTCTTCTTGCAGTTCTACGAATGATCAAAGAGAACTACAGCTCAGGGCATTCAGTAAAAGAAGACATGCTGATTGTTGTAGGAGTCCACGATGTTGATGGAGGCTCAACTACACAGAATTTAGAGGTGAAAGATGCAATAACGAAACTTCTGCAGGATGAATTGGGGCTCAAGGTTGTTGCAACAGGACCGAAAACGGGACTTGATACGACAATAGAAGCGGAGAACATTACTGATTCAGATCAAGATTCAGAAGAGATGACAAGTAGGAATGAATTAACGACTGACTTGACATATTCCACTAGACGACCCGTTGCACTAGAAAGGCTAAAGGTAACCAGGGGATCGTTGCTACAGTGGCTGCGGAAAAGAAGTGCCCCAAGAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

820

Amino Acids

91.62

Weight (kDa)

8.08

Isoelectric Point (pI)

36.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	236 - 364	1.2e-06	Pentacotripeptide-repeat region of PRORP
PPR_long	PF17177	269 - 421	4.8e-10	Pentacotripeptide-repeat region of PRORP
PPR_long	PF17177	308 - 467	4.8e-12	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	331 - 464	1.6e-08	Fungal tetratrico peptide repeats
PPR_3	PF13812	365 - 416	2.8e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	368 - 416	7.1e-10	PPR repeat family
PPR_1	PF12854	399 - 430	2e-09	PPR repeat
PPR_2	PF13041	402 - 450	2.6e-13	PPR repeat family
PPR	PF01535	405 - 434	3.5e-08	PPR repeat
PPR_long	PF17177	411 - 545	1.2e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	426 - 490	1.6e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	437 - 489	2.3e-08	PPR repeat family
PPR_long	PF17177	481 - 617	7.1e-10	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	510 - 558	5.3e-06	PPR repeat family
PPR_3	PF13812	534 - 591	5.6e-15	Pentatricopeptide repeat domain
PPR_2	PF13041	545 - 591	1.2e-12	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02830
fragaria_vesca	FvH4_6g15120 FvH4_6g15120 FvH4_6g15120 FvH4_6g15120 FvH4_6g15120
malus_domestica	MD12G1126500.v1.1
prunus_persica	Prupe.6G243100_v2.0.a1
pyrus_communis	pycom12g12460
rosa_chinensis	RchiOBHm_Chr3g0468421
rosa_laevigata	RLG00000024430
rosa_multiflora	Rmu_sc0014003.1_g000015 Rmu_sc0020046.1_g000004
rosa_roxburghii	Rroxscaffold_6G00412780
rosa_rugosa	Rorug03G0095300 Rorug03G0095400
rosa_samantha	Rh3AG143100 Rh3BG165500 Rh3DG165100
rosa_wichuraiana	Rw0G014180 Rw3G013520 Rw3G013550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	999
AarI	CACCTGC	2 cut(s)	1184, 1610
AasI	GACNNNNNNGTC	1 cut(s)	1971
Acc16I	TGCGCA	1 cut(s)	678
Acc36I	ACCTGC	3 cut(s)	1184, 1241, 1610
AclWI	GGATC	3 cut(s)	324, 337, 2422
AcsI	RAATTY	4 cut(s)	707, 1684, 1741, 2188
AcuI	CTGAAG	1 cut(s)	263
AcyI	GRCGYC	2 cut(s)	321, 975
AfaI	GTAC	6 cut(s)	476, 848, 1068, 1115, 1445, 1471
AfiI	CCNNNNNNNGG	5 cut(s)	207, 643, 1012, 2267, 2454
AjnI	CCWGG	3 cut(s)	1812, 1966, 2408
Alw21I	GWGCWC	2 cut(s)	444, 549
Alw26I	GTCTC	3 cut(s)	490, 911, 1957
AlwI	GGATC	3 cut(s)	324, 337, 2422
AlwNI	CAGNNNCTG	2 cut(s)	1239, 2431
Ama87I	CYCGRG	1 cut(s)	443
AoxI	GGCC	1 cut(s)	1461
ApeKI	GCWGC	2 cut(s)	1978, 2431
ApoI	RAATTY	4 cut(s)	707, 1684, 1741, 2188
ArsI	GACNNNNNNTTYG	2 cut(s)	861, 893
AspLEI	GCGC	3 cut(s)	349, 679, 1238
AspS9I	GGNCC	2 cut(s)	211, 2258
AsuC2I	CCSGG	1 cut(s)	1826
AsuHPI	GGTGA	1 cut(s)	2209
AsuNHI	GCTAGC	1 cut(s)	1693
AvaI	CYCGRG	1 cut(s)	443
AvaII	GGWCC	2 cut(s)	211, 2258
BaeGI	GKGCMC	1 cut(s)	2449
BamHI	GGATCC	1 cut(s)	329
BanII	GRGCYC	4 cut(s)	444, 549, 1774, 2241
BarI	GAAGNNNNNNTAC	2 cut(s)	1887, 1919
BbsI	GAAGAC	3 cut(s)	1099, 1185, 2139
Bbv12I	GWGCWC	2 cut(s)	444, 549
BbvCI	CCTCAGC	1 cut(s)	20
BbvI	GCAGC	2 cut(s)	1965, 2418
BccI	CCATC	3 cut(s)	464, 1580, 2162
BceAI	ACGGC	2 cut(s)	185, 357
BcgI	CGANNNNNNTGC	2 cut(s)	2203, 2237
BciT130I	CCWGG	3 cut(s)	1814, 1968, 2410
BclI	TGATCA	2 cut(s)	1230, 2094
BcnI	CCSGG	1 cut(s)	1826
BcoDI	GTCTC	3 cut(s)	490, 911, 1957
BfaI	CTAG	5 cut(s)	843, 1694, 1868, 2373, 2390
BfmI	CTRYAG	5 cut(s)	1191, 1653, 2107, 2222, 2423
BfoI	RGCGCY	2 cut(s)	350, 1239
BfuAI	ACCTGC	3 cut(s)	1184, 1241, 1610
BisI	GCNGC	4 cut(s)	78, 345, 1979, 2432
BlsI	GCNGC	4 cut(s)	79, 346, 1980, 2433
Bme1390I	CCNGG	4 cut(s)	1814, 1826, 1968, 2410
Bme18I	GGWCC	2 cut(s)	211, 2258
BmeT110I	CYCGRG	1 cut(s)	443
BmgT120I	GGNCC	2 cut(s)	211, 2258
BmiI	GGNNCC	5 cut(s)	212, 213, 331, 450, 597
BmrFI	CCNGG	4 cut(s)	1814, 1826, 1968, 2410
BmsI	GCATC	5 cut(s)	764, 828, 1132, 1278, 2194
BmtI	GCTAGC	1 cut(s)	1697
BpiI	GAAGAC	3 cut(s)	1099, 1185, 2139
BpmI	CTGGAG	1 cut(s)	614
Bpu10I	CCTNAGC	5 cut(s)	20, 350, 1573, 2026, 2113
BpuEI	CTTGAG	1 cut(s)	2225
BpuMI	CCSGG	1 cut(s)	1826
BsaAI	YACGTR	2 cut(s)	1113, 1218
BsaBI	GATNNNNATC	1 cut(s)	2310
BsaHI	GRCGYC	2 cut(s)	321, 975
BsaI	GGTCTC	1 cut(s)	1957
BsaJI	CCNNGG	2 cut(s)	759, 2409
BsaXI	ACNNNNNCTCC	4 cut(s)	77, 107, 487, 517
Bsc4I	CCNNNNNNNGG	5 cut(s)	207, 643, 1012, 2267, 2454
Bse118I	RCCGGY	1 cut(s)	507
Bse1I	ACTGG	2 cut(s)	1360, 1387
Bse3DI	GCAATG	2 cut(s)	51, 1921
Bse8I	GATNNNNATC	1 cut(s)	2310
BseBI	CCWGG	3 cut(s)	1814, 1968, 2410
BseDI	CCNNGG	2 cut(s)	759, 2409
BseGI	GGATG	6 cut(s)	755, 1108, 1329, 1507, 1632, 2233
BseJI	GATNNNNATC	1 cut(s)	2310
BseLI	CCNNNNNNNGG	5 cut(s)	207, 643, 1012, 2267, 2454
BseMI	GCAATG	2 cut(s)	51, 1921
BseMII	CTCAG	7 cut(s)	34, 364, 416, 761, 1587, 1757, 2127
BseNI	ACTGG	2 cut(s)	1360, 1387
BseRI	GAGGAG	1 cut(s)	1898
BseSI	GKGCMC	1 cut(s)	2449
BseXI	GCAGC	2 cut(s)	1965, 2418
BseYI	CCCAGC	3 cut(s)	207, 490, 1028
BsgI	GTGCAG	2 cut(s)	551, 1638
Bsh1285I	CGRYCG	1 cut(s)	1861
BshFI	GGCC	1 cut(s)	1463
BsiEI	CGRYCG	1 cut(s)	1861
BsiHKAI	GWGCWC	2 cut(s)	444, 549
BsiHKCI	CYCGRG	1 cut(s)	443
BsiSI	CCGG	2 cut(s)	508, 1825
BslFI	GGGAC	3 cut(s)	224, 1841, 2283
BslI	CCNNNNNNNGG	5 cut(s)	207, 643, 1012, 2267, 2454
BsmAI	GTCTC	3 cut(s)	490, 911, 1957
BsmFI	GGGAC	3 cut(s)	224, 1841, 2283
BsmI	GAATGC	2 cut(s)	1843, 2119
BsnI	GGCC	1 cut(s)	1463
Bso31I	GGTCTC	1 cut(s)	1957
BsoBI	CYCGRG	1 cut(s)	443
Bsp1286I	GDGCHC	5 cut(s)	444, 549, 1774, 2241, 2449
Bsp143I	GATC	7 cut(s)	329, 579, 1230, 1858, 2094, 2311, 2414
BspANI	GGCC	1 cut(s)	1463
BspCNI	CTCAG	7 cut(s)	33, 363, 417, 762, 1586, 1758, 2126
BspHI	TCATGA	1 cut(s)	909
BspLI	GGNNCC	5 cut(s)	212, 213, 331, 450, 597
BspMAI	CTGCAG	2 cut(s)	1195, 2226
BspMI	ACCTGC	3 cut(s)	1184, 1241, 1610
BspOI	GCTAGC	1 cut(s)	1697
BspPI	GGATC	3 cut(s)	324, 337, 2422
BspQI	GCTCTTC	1 cut(s)	1391
BspTNI	GGTCTC	1 cut(s)	1957
BsrDI	GCAATG	2 cut(s)	51, 1921
BsrFI	RCCGGY	1 cut(s)	507
BsrI	ACTGG	2 cut(s)	1360, 1387
BssAI	RCCGGY	1 cut(s)	507
BssECI	CCNNGG	2 cut(s)	759, 2409
BssMI	GATC	7 cut(s)	329, 579, 1230, 1858, 2094, 2311, 2414
BssNI	GRCGYC	2 cut(s)	321, 975
BssT1I	CCWWGG	1 cut(s)	759
Bst2UI	CCWGG	3 cut(s)	1814, 1968, 2410
Bst4CI	ACNGT	7 cut(s)	456, 501, 905, 1213, 1320, 1787, 2427
Bst6I	CTCTTC	4 cut(s)	66, 1278, 1391, 2319
BstACI	GRCGYC	2 cut(s)	321, 975
BstBAI	YACGTR	2 cut(s)	1113, 1218
BstC8I	GCNNGC	5 cut(s)	509, 1300, 1357, 1617, 1695
BstDEI	CTNAG	8 cut(s)	20, 350, 425, 770, 1573, 1766, 2026, 2113
BstEII	GGTNACC	1 cut(s)	2404
BstENI	CCTNNNNNAGG	1 cut(s)	1010
BstF5I	GGATG	6 cut(s)	755, 1108, 1329, 1507, 1632, 2233
BstH2I	RGCGCY	2 cut(s)	350, 1239
BstHHI	GCGC	3 cut(s)	349, 679, 1238
BstKTI	GATC	7 cut(s)	332, 582, 1233, 1861, 2097, 2314, 2417
BstMAI	GTCTC	3 cut(s)	490, 911, 1957
BstMBI	GATC	7 cut(s)	329, 579, 1230, 1858, 2094, 2311, 2414
BstMCI	CGRYCG	1 cut(s)	1861
BstMWI	GCNNNNNNNGC	5 cut(s)	248, 743, 752, 989, 2428
BstNI	CCWGG	3 cut(s)	1814, 1968, 2410
BstNSI	RCATGY	7 cut(s)	677, 996, 1020, 1186, 1343, 1834, 2140
BstPI	GGTNACC	1 cut(s)	2404
BstSCI	CCNGG	4 cut(s)	1812, 1824, 1966, 2408
BstSFI	CTRYAG	5 cut(s)	1191, 1653, 2107, 2222, 2423
BstSLI	GKGCMC	1 cut(s)	2449
BstV1I	GCAGC	2 cut(s)	1965, 2418
BstV2I	GAAGAC	3 cut(s)	1099, 1185, 2139
BstX2I	RGATCY	1 cut(s)	329
BstYI	RGATCY	1 cut(s)	329
BsuRI	GGCC	1 cut(s)	1463
BtsCI	GGATG	6 cut(s)	755, 1108, 1329, 1507, 1632, 2233
BtsI	GCAGTG	1 cut(s)	631
BtsIMutI	CAGTG	4 cut(s)	506, 631, 1325, 2432
BveI	ACCTGC	3 cut(s)	1184, 1241, 1610
Cac8I	GCNNGC	5 cut(s)	509, 1300, 1357, 1617, 1695
CaiI	CAGNNNCTG	2 cut(s)	1239, 2431
CciI	TCATGA	1 cut(s)	909
CfoI	GCGC	3 cut(s)	349, 679, 1238
Cfr10I	RCCGGY	1 cut(s)	507
Cfr13I	GGNCC	2 cut(s)	211, 2258
CseI	GACGC	3 cut(s)	295, 310, 964
Csp6I	GTAC	6 cut(s)	475, 847, 1067, 1114, 1444, 1470
CviQI	GTAC	6 cut(s)	475, 847, 1067, 1114, 1444, 1470
DdeI	CTNAG	8 cut(s)	20, 350, 425, 770, 1573, 1766, 2026, 2113
DpnI	GATC	7 cut(s)	331, 581, 1232, 1860, 2096, 2313, 2416
DpnII	GATC	7 cut(s)	329, 579, 1230, 1858, 2094, 2311, 2414
DrdI	GACNNNNNNGTC	1 cut(s)	1971
DseDI	GACNNNNNNGTC	1 cut(s)	1971
Eam1104I	CTCTTC	4 cut(s)	66, 1278, 1391, 2319
EarI	CTCTTC	4 cut(s)	66, 1278, 1391, 2319
EciI	GGCGGA	1 cut(s)	187
Ecl136II	GAGCTC	2 cut(s)	442, 547
Eco130I	CCWWGG	1 cut(s)	759
Eco147I	AGGCCT	1 cut(s)	1463
Eco24I	GRGCYC	4 cut(s)	444, 549, 1774, 2241
Eco31I	GGTCTC	1 cut(s)	1957
Eco32I	GATATC	1 cut(s)	1561
Eco47I	GGWCC	2 cut(s)	211, 2258
Eco53kI	GAGCTC	2 cut(s)	442, 547
Eco57I	CTGAAG	1 cut(s)	263
Eco88I	CYCGRG	1 cut(s)	443
Eco91I	GGTNACC	1 cut(s)	2404
EcoICRI	GAGCTC	2 cut(s)	442, 547
EcoNI	CCTNNNNNAGG	1 cut(s)	1010
EcoO109I	RGGNCCY	1 cut(s)	211
EcoO65I	GGTNACC	1 cut(s)	2404
EcoRII	CCWGG	3 cut(s)	1812, 1966, 2408
EcoRV	GATATC	1 cut(s)	1561
EcoT14I	CCWWGG	1 cut(s)	759
EcoT38I	GRGCYC	4 cut(s)	444, 549, 1774, 2241
ErhI	CCWWGG	1 cut(s)	759
FalI	AAGNNNNNCTT	4 cut(s)	643, 675, 1275, 1307
FaqI	GGGAC	3 cut(s)	224, 1841, 2283
FauI	CCCGC	2 cut(s)	188, 1834
FauNDI	CATATG	2 cut(s)	601, 748
FbaI	TGATCA	2 cut(s)	1230, 2094
Fnu4HI	GCNGC	4 cut(s)	78, 345, 1979, 2432
FokI	GGATG	6 cut(s)	742, 1115, 1316, 1514, 1639, 2240
FriOI	GRGCYC	4 cut(s)	444, 549, 1774, 2241
Fsp4HI	GCNGC	4 cut(s)	78, 345, 1979, 2432
FspAI	RTGCGCAY	1 cut(s)	678
FspBI	CTAG	5 cut(s)	843, 1694, 1868, 2373, 2390
FspI	TGCGCA	1 cut(s)	678
GlaI	GCGC	3 cut(s)	348, 678, 1237
GluI	GCNGC	4 cut(s)	78, 345, 1979, 2432
GsaI	CCCAGC	3 cut(s)	211, 494, 1032
GsuI	CTGGAG	1 cut(s)	614
HaeII	RGCGCY	2 cut(s)	350, 1239
HaeIII	GGCC	1 cut(s)	1463
HapII	CCGG	2 cut(s)	508, 1825
HgaI	GACGC	3 cut(s)	295, 310, 964
HhaI	GCGC	3 cut(s)	349, 679, 1238
Hin1I	GRCGYC	2 cut(s)	321, 975
Hin6I	GCGC	3 cut(s)	347, 677, 1236
HinP1I	GCGC	3 cut(s)	347, 677, 1236
HincII	GTYRAC	1 cut(s)	2035
HindII	GTYRAC	1 cut(s)	2035
HindIII	AAGCTT	1 cut(s)	275
HinfI	GANTC	7 cut(s)	67, 731, 967, 1079, 2154, 2306, 2318
HpaII	CCGG	2 cut(s)	508, 1825
HphI	GGTGA	1 cut(s)	2209
Hpy166II	GTNNAC	5 cut(s)	339, 919, 952, 2035, 2158
Hpy188III	TCNNGA	5 cut(s)	281, 577, 910, 1575, 2315
Hpy8I	GTNNAC	5 cut(s)	339, 919, 952, 2035, 2158
Hpy99I	CGWCG	1 cut(s)	311
HpyCH4III	ACNGT	7 cut(s)	456, 501, 905, 1213, 1320, 1787, 2427
HpyCH4IV	ACGT	4 cut(s)	555, 1112, 1217, 1442
HpyF10VI	GCNNNNNNNGC	5 cut(s)	248, 743, 752, 989, 2428
HpyF3I	CTNAG	8 cut(s)	20, 350, 425, 770, 1573, 1766, 2026, 2113
HpySE526I	ACGT	4 cut(s)	555, 1112, 1217, 1442
Hsp92I	GRCGYC	2 cut(s)	321, 975
HspAI	GCGC	3 cut(s)	347, 677, 1236
KflI	GGGWCCC	1 cut(s)	211
KroI	GCCGGC	1 cut(s)	507
KroNI	GCCGGC	1 cut(s)	509
Ksp22I	TGATCA	2 cut(s)	1230, 2094
Kzo9I	GATC	7 cut(s)	329, 579, 1230, 1858, 2094, 2311, 2414
LguI	GCTCTTC	1 cut(s)	1391
LmnI	GCTCC	1 cut(s)	595
Lsp1109I	GCAGC	2 cut(s)	1965, 2418
LweI	GCATC	5 cut(s)	764, 828, 1132, 1278, 2194
MaeI	CTAG	5 cut(s)	843, 1694, 1868, 2373, 2390
MaeII	ACGT	4 cut(s)	555, 1112, 1217, 1442
MaeIII	GTNAC	6 cut(s)	266, 877, 1213, 1747, 1844, 2404
MalI	GATC	7 cut(s)	331, 581, 1232, 1860, 2096, 2313, 2416
MboI	GATC	7 cut(s)	329, 579, 1230, 1858, 2094, 2311, 2414
MfeI	CAATTG	1 cut(s)	1274
MflI	RGATCY	1 cut(s)	329
MhlI	GDGCHC	5 cut(s)	444, 549, 1774, 2241, 2449
MlyI	GAGTC	2 cut(s)	740, 2163
MmeI	TCCRAC	2 cut(s)	708, 1080
MroNI	GCCGGC	1 cut(s)	507
MseI	TTAA	3 cut(s)	1010, 1326, 2348
MslI	CAYNNNNRTG	1 cut(s)	1344
MspA1I	CMGCKG	1 cut(s)	207
MspI	CCGG	2 cut(s)	508, 1825
MspR9I	CCNGG	4 cut(s)	1814, 1826, 1968, 2410
MunI	CAATTG	1 cut(s)	1274
Mva1269I	GAATGC	2 cut(s)	1843, 2119
MvaI	CCWGG	3 cut(s)	1814, 1968, 2410
MwoI	GCNNNNNNNGC	5 cut(s)	248, 743, 752, 989, 2428
NaeI	GCCGGC	1 cut(s)	509
NciI	CCSGG	1 cut(s)	1826
NdeI	CATATG	2 cut(s)	601, 748
NdeII	GATC	7 cut(s)	329, 579, 1230, 1858, 2094, 2311, 2414
NgoMIV	GCCGGC	1 cut(s)	507
NheI	GCTAGC	1 cut(s)	1693
NlaIV	GGNNCC	5 cut(s)	212, 213, 331, 450, 597
NmuCI	GTSAC	3 cut(s)	266, 877, 1747
NsbI	TGCGCA	1 cut(s)	678
NspI	RCATGY	7 cut(s)	677, 996, 1020, 1186, 1343, 1834, 2140
PagI	TCATGA	1 cut(s)	909
PaqCI	CACCTGC	2 cut(s)	1184, 1610
PceI	AGGCCT	1 cut(s)	1463
PciSI	GCTCTTC	1 cut(s)	1391
PcsI	WCGNNNNNNNCGW	1 cut(s)	306
PctI	GAATGC	2 cut(s)	1843, 2119
PdiI	GCCGGC	1 cut(s)	509
PfeI	GAWTC	5 cut(s)	67, 967, 1079, 2306, 2318
PflFI	GACNNNGTC	1 cut(s)	501
PkrI	GCNGC	4 cut(s)	79, 346, 1980, 2433
Ple19I	CGATCG	1 cut(s)	1861
PleI	GAGTC	2 cut(s)	739, 2162
PpsI	GAGTC	2 cut(s)	739, 2162
Ppu21I	YACGTR	2 cut(s)	1113, 1218
PpuMI	RGGWCCY	1 cut(s)	211
PsiI	TTATAA	1 cut(s)	999
Psp124BI	GAGCTC	2 cut(s)	444, 549
Psp5II	RGGWCCY	1 cut(s)	211
Psp6I	CCWGG	3 cut(s)	1812, 1966, 2408
PspEI	GGTNACC	1 cut(s)	2404
PspFI	CCCAGC	3 cut(s)	207, 490, 1028
PspGI	CCWGG	3 cut(s)	1812, 1966, 2408
PspN4I	GGNNCC	5 cut(s)	212, 213, 331, 450, 597
PspPI	GGNCC	2 cut(s)	211, 2258
PspPPI	RGGWCCY	1 cut(s)	211
PsrI	GAACNNNNNNTAC	2 cut(s)	1771, 1803
PstI	CTGCAG	2 cut(s)	1195, 2226
PstNI	CAGNNNCTG	2 cut(s)	1239, 2431
PsuI	RGATCY	1 cut(s)	329
PsyI	GACNNNGTC	1 cut(s)	501
PvuI	CGATCG	1 cut(s)	1861
RsaI	GTAC	6 cut(s)	476, 848, 1068, 1115, 1445, 1471
RsaNI	GTAC	6 cut(s)	475, 847, 1067, 1114, 1444, 1470
RseI	CAYNNNNRTG	1 cut(s)	1344
SacI	GAGCTC	2 cut(s)	444, 549
SapI	GCTCTTC	1 cut(s)	1391
SaqAI	TTAA	3 cut(s)	1010, 1326, 2348
SatI	GCNGC	4 cut(s)	78, 345, 1979, 2432
Sau3AI	GATC	7 cut(s)	329, 579, 1230, 1858, 2094, 2311, 2414
Sau96I	GGNCC	2 cut(s)	211, 2258
SchI	GAGTC	2 cut(s)	740, 2163
ScrFI	CCNGG	4 cut(s)	1814, 1826, 1968, 2410
SduI	GDGCHC	5 cut(s)	444, 549, 1774, 2241, 2449
SfaNI	GCATC	5 cut(s)	764, 828, 1132, 1278, 2194
SfcI	CTRYAG	5 cut(s)	1191, 1653, 2107, 2222, 2423
SinI	GGWCC	2 cut(s)	211, 2258
SmiMI	CAYNNNNRTG	1 cut(s)	1344
SmlI	CTYRAG	1 cut(s)	2240
SmoI	CTYRAG	1 cut(s)	2240
SseBI	AGGCCT	1 cut(s)	1463
SspI	AATATT	1 cut(s)	889
SspMI	CTAG	5 cut(s)	843, 1694, 1868, 2373, 2390
SstI	GAGCTC	2 cut(s)	444, 549
StuI	AGGCCT	1 cut(s)	1463
StyD4I	CCNGG	4 cut(s)	1812, 1824, 1966, 2408
StyI	CCWWGG	1 cut(s)	759
TaaI	ACNGT	7 cut(s)	456, 501, 905, 1213, 1320, 1787, 2427
TaiI	ACGT	4 cut(s)	558, 1115, 1220, 1445
TaqI	TCGA	4 cut(s)	300, 1350, 1547, 1584
TaqII	GACCGA	1 cut(s)	2275
TatI	WGTACW	1 cut(s)	1066
TauI	GCSGC	2 cut(s)	80, 347
TfiI	GAWTC	5 cut(s)	67, 967, 1079, 2306, 2318
Tru1I	TTAA	3 cut(s)	1010, 1326, 2348
Tru9I	TTAA	3 cut(s)	1010, 1326, 2348
TscAI	CASTG	4 cut(s)	506, 638, 1325, 2432
TseFI	GTSAC	3 cut(s)	266, 877, 1747
TseI	GCWGC	2 cut(s)	1978, 2431
Tsp45I	GTSAC	3 cut(s)	266, 877, 1747
TspGWI	ACGGA	1 cut(s)	285
TspRI	CASTG	4 cut(s)	506, 638, 1325, 2432
Tth111I	GACNNNGTC	1 cut(s)	501
VpaK11BI	GGWCC	2 cut(s)	211, 2258
XagI	CCTNNNNNAGG	1 cut(s)	1010
XapI	RAATTY	4 cut(s)	707, 1684, 1741, 2188
XceI	RCATGY	7 cut(s)	677, 996, 1020, 1186, 1343, 1834, 2140
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2165
XspI	CTAG	5 cut(s)	843, 1694, 1868, 2373, 2390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.