Rorug03G0095300

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
7446335 .. 7449107
2773 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0095300.1

Sequence Viewer

Length: 1806 bp
ATGGGAATGGTTTCTGAGAACCCTTTTGCTTTTTCTAACCGTTCTCCTAAGCTCTGCAACTCCTTCACCACTCGTATCTTTTCGGATGTTGCTGGGGACATTACAATCGTTGTCGATGGAGAATCCTTCTTACTTCACAAGTTTCCATTGGTGTCTCGAAGTGGAAAGATTCGGAAAATGGTTGCAGATGCCAAGGATTCAGCTGCAAAATTGGAGCTCCACAACATACCAGGAGGACCACAGGCATTTGAACTTGCAATGAAATTTTGTTATGGCATGAACTTTGAGATCACGAGCGGAAATGTTGCCCATCTTCGCTGCGCTGCTGAATACTTGGAAATGTCTGAAGACTATAGGGATGAAAACCTTATTGAGCGAACGGAGATTTACCTGAATGAGGTTGTAGTTCAAAGTCTTGAGAAGTCAGTGGAAGTCCTCACCACCTGCCAGACACTACCTTCTATAGCCGAGGAGGTTGGAATTCCAAGCAGATGTGTGGAGGCTATTGCTACCAATGCTTGTAAGGAACAATTGATGTCAGGGTTGTCTATGTTAAATTGTGATGGTGAATCTCCTGAGCTTAAGAGTGGTTGTCTCGAGTGGTGGGTTGAAGATCTCTCATTGCTAAGGATCGAATACTATCAGAGGGTTATTTTTGCCATGCAAAGAACAGGTGTTCGACCAGATAGCATTGTTGCATCTTTAATGCATTTTGCTCAAACATCCTTAAAGGGTATTGGAAAATGTCAAATTTGGAAAAAGCCAGATAGCTTACCAGAACATGACCAAAGGACTATTGTGGAAACCCTTATAAGCTTAATGCCAACAGAGAAAAGCTGTTCGGTGCCACTGAGTTTTATGTTTGGAATGCTGAGGATGTCAATCATGGTGGATTCTGCAATTGCCTGCAGGCTCGAGATTGAAAGGAGGATTGCTTACAGGTTGGAGATGGTTACACTAGATGATATCCTTATACCGTCCATTTATGCAGGGGGTTCACTGTATGATGTTGATACCGTTCATCGAATACTGGTGAACTTCCTACAGCGGATTGAAGAAGAAGAAGATGAAGACTGTGGATATGAGTCGGAAGGCATTGCTAATTCTCCGAGCCATGGTTCATTGTTGAAAGTTGGACGGCTTATTGACTCATATCTAGCTGAAATTGCTCCTGACCCATACCTTAGCTTGCAAAAGTTCGTTGCTATGATTGAAGTACTGCCTGATTATGCTCGAGTCATCGATGATGGACTTTACAGGGCGGTTGATATATATTTGAAGGTACATTCAATGCTAACTGAACAAGAATGCAAGAAGCTCTGCAAGTTTATAGACTGTCAAAAGCTCTCTCAAGAAGCCTGCAACCATGCTGCACAAAATGATCGGCTCCCAGTACAGATGACAGTGAGGGTTCTGTATTTCGAGCAGGTCCGATTGAAGACTGCACTGTCAGGAAACTCAGGAGATGGGTTTGTCTCGCAGAGAATAAGCAGCGGGGTACCAAGTGCAGCCATGTCCCCCCGAGATAACTATGCTTCATTGAGGAGAGAAAACCGAGAACTGAAGCTGGAGATCTCAAGAATGAGAGTGAGGCTGAGCGAGTTGGAGAAAGAGCAGTTGTTTATGAAACAAGGAATGATGGACAAGACAGGAAATGGCAAAACTTTCTTGACCTCAATCTCTAAGGGGATTGGAAAAATGGGAATTTTTAGTGGTCAAGCAGGAGGTAAACGACAGAAATCGAGTAGGAAGTCCCGGGGATCGGAGGGGAAAACTGGTAGGGGTAGGAGGCACTCTCTTTCCTAG

Protein Analysis

601

Amino Acids

67.31

Weight (kDa)

6.16

Isoelectric Point (pI)

48.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB PF00651 33 - 116 3.5e-08 BTB/POZ domain
NPH3 PF03000 200 - 454 1.1e-87 NPH3 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000029)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13530 FvH4_4g18270 FvH4_6g12200 FvH4_6g12460 FvH4_6g12461 FvH4_6g13450 FvH4_6g15090 FvH4_6g15220 FvH4_6g15230 FvH4_6g15250 FvH4_6g15251 FvH4_6g15340 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47980 FvH4_6g47980 FvH4_6g47980 FvH4_6g48170 FvH4_6g48310 FvH4_6g48310 FvH4_6g48850 FvH4_6g48881 FvH4_7g11830
malus_domestica MD02G1059900.v1.1 MD02G1069600.v1.1 MD02G1069700.v1.1 MD02G1070100.v1.1 MD02G1070200.v1.1 MD02G1070300.v1.1 MD02G1070800.v1.1 MD02G1070900.v1.1 MD02G1071200.v1.1 MD02G1071400.v1.1 MD02G1071900.v1.1 MD02G1075200.v1.1 MD03G1048000.v1.1 MD03G1049100.v1.1 MD03G1049200.v1.1 MD03G1052500.v1.1 MD03G1054100.v1.1 MD03G1054300.v1.1 MD03G1054400.v1.1 MD04G1113400.v1.1 MD04G1211100.v1.1 MD04G1211200.v1.1 MD05G1174900.v1.1 MD05G1175000.v1.1 MD05G1175900.v1.1 MD05G1243400.v1.1 MD07G1031500.v1.1 MD07G1031600.v1.1 MD07G1032500.v1.1 MD11G1046800.v1.1 MD11G1046900.v1.1 MD11G1047000.v1.1 MD11G1050400.v1.1 MD11G1050600.v1.1 MD11G1050800.v1.1 MD11G1051100.v1.1 MD11G1051600.v1.1 MD11G1051700.v1.1 MD11G1054600.v1.1 MD11G1055600.v1.1 MD11G1055700.v1.1 MD11G1055800.v1.1 MD11G1056000.v1.1 MD12G1126600.v1.1 MD12G1126700.v1.1 MD12G1126800.v1.1 MD12G1127300.v1.1 MD12G1127600.v1.1 MD12G1127900.v1.1 MD12G1128100.v1.1 MD12G1128300.v1.1 MD15G1261500.v1.1
prunus_persica Prupe.1G010700_v2.0.a1 Prupe.1G010800_v2.0.a1 Prupe.1G011000_v2.0.a1 Prupe.1G159600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163700_v2.0.a1 Prupe.1G163700_v2.0.a1 Prupe.1G163800_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G235500_v2.0.a1 Prupe.2G067400_v2.0.a1 Prupe.2G067500_v2.0.a1 Prupe.2G111700_v2.0.a1 Prupe.2G111800_v2.0.a1 Prupe.3G012000_v2.0.a1 Prupe.6G243400_v2.0.a1 Prupe.6G243500_v2.0.a1 Prupe.6G243600_v2.0.a1 Prupe.6G243700_v2.0.a1 Prupe.6G243800_v2.0.a1 Prupe.6G243900_v2.0.a1
pyrus_communis pycom02g04860 pycom02g04880 pycom02g04890 pycom02g05510 pycom02g05520 pycom02g05600 pycom02g05930 pycom02g06000 pycom02g06010 pycom03g03800 pycom03g03860 pycom03g03880 pycom03g03890 pycom03g03910 pycom03g03920 pycom03g04200 pycom03g04290 pycom03g04300 pycom03g04310 pycom03g04320 pycom03g09260 pycom04g10150 pycom04g10160 pycom04g10170 pycom05g16180 pycom05g16190 pycom05g16240 pycom05g21980 pycom05g21990 pycom07g02280 pycom11g03800 pycom11g03810 pycom11g04080 pycom11g04140 pycom11g04150 pycom11g04160 pycom11g04570 pycom11g04580 pycom11g04590 pycom11g04610 pycom12g12470 pycom12g12490 pycom13g22050
rosa_chinensis RchiOBHm_Chr1g0317761 RchiOBHm_Chr1g0317821 RchiOBHm_Chr1g0317831 RchiOBHm_Chr1g0317871 RchiOBHm_Chr1g0350501 RchiOBHm_Chr2g0107631 RchiOBHm_Chr3g0452091 RchiOBHm_Chr3g0464001 RchiOBHm_Chr3g0464281 RchiOBHm_Chr3g0466331 RchiOBHm_Chr3g0467341 RchiOBHm_Chr3g0467381 RchiOBHm_Chr3g0467731 RchiOBHm_Chr3g0468291 RchiOBHm_Chr3g0468321 RchiOBHm_Chr3g0468341 RchiOBHm_Chr3g0468391 RchiOBHm_Chr3g0468411 RchiOBHm_Chr3g0468571 RchiOBHm_Chr3g0468591 RchiOBHm_Chr3g0490721 RchiOBHm_Chr3g0490751 RchiOBHm_Chr3g0490761 RchiOBHm_Chr3g0490771 RchiOBHm_Chr3g0490951 RchiOBHm_Chr3g0491001 RchiOBHm_Chr3g0491011 RchiOBHm_Chr4g0412461 RchiOBHm_Chr4g0414161 RchiOBHm_Chr4g0414181 RchiOBHm_Chr4g0414191 RchiOBHm_Chr4g0414281 RchiOBHm_Chr4g0414441 RchiOBHm_Chr4g0414521 RchiOBHm_Chr4g0414531 RchiOBHm_Chr4g0417011 RchiOBHm_Chr4g0417021 RchiOBHm_Chr4g0417041 RchiOBHm_Chr4g0417071 RchiOBHm_Chr4g0417101 RchiOBHm_Chr4g0417531 RchiOBHm_Chr4g0417641 RchiOBHm_Chr4g0417651 RchiOBHm_Chr4g0417701 RchiOBHm_Chr4g0417731 RchiOBHm_Chr4g0417741 RchiOBHm_Chr4g0417781 RchiOBHm_Chr4g0418751 RchiOBHm_Chr4g0418791 RchiOBHm_Chr4g0418861 RchiOBHm_Chr4g0418881 RchiOBHm_Chr4g0418901 RchiOBHm_Chr4g0422451 RchiOBHm_Chr4g0422461 RchiOBHm_Chr4g0422471 RchiOBHm_Chr4g0422541 RchiOBHm_Chr4g0422561 RchiOBHm_Chr4g0422591 RchiOBHm_Chr4g0422651 RchiOBHm_Chr4g0422661 RchiOBHm_Chr5g0003251 RchiOBHm_Chr5g0003261 RchiOBHm_Chr5g0055871 RchiOBHm_Chr7g0204701 RchiOBHm_Chr7g0204741
rosa_laevigata RLG00000007607 RLG00000007932 RLG00000017606 RLG00000024418 RLG00000025629 RLG00000030586
rosa_multiflora Rmu_co7959167.1_g000001 Rmu_co8021330.1_g000001 Rmu_co8132128.1_g000001 Rmu_co8224744.1_g000001 Rmu_co8281865.1_g000001 Rmu_co8298487.1_g000001 Rmu_co8319035.1_g000001 Rmu_co8380035.1_g000001 Rmu_co8385371.1_g000001 Rmu_co8398173.1_g000001 Rmu_co8423363.1_g000001 Rmu_co8438275.1_g000001 Rmu_co8474729.1_g000001 Rmu_sc0000057.1_g000008 Rmu_sc0000350.1_g000023 Rmu_sc0000480.1_g000005 Rmu_sc0000654.1_g000021 Rmu_sc0000654.1_g000029 Rmu_sc0000654.1_g000032 Rmu_sc0000654.1_g000041 Rmu_sc0000654.1_g000045 Rmu_sc0000772.1_g000002 Rmu_sc0000772.1_g000041 Rmu_sc0000808.1_g000040 Rmu_sc0000830.1_g000062 Rmu_sc0000830.1_g000065 Rmu_sc0000830.1_g000072 Rmu_sc0000830.1_g000073 Rmu_sc0000935.1_g000020 Rmu_sc0000935.1_g000024 Rmu_sc0000935.1_g000026 Rmu_sc0000935.1_g000027 Rmu_sc0000935.1_g000031 Rmu_sc0000935.1_g000033 Rmu_sc0000962.1_g000033 Rmu_sc0000962.1_g000036 Rmu_sc0000962.1_g000063 Rmu_sc0000962.1_g000064 Rmu_sc0000962.1_g000065 Rmu_sc0001029.1_g000007 Rmu_sc0001063.1_g000014 Rmu_sc0001149.1_g000010 Rmu_sc0001149.1_g000011 Rmu_sc0001358.1_g000009 Rmu_sc0001448.1_g000003 Rmu_sc0001448.1_g000004 Rmu_sc0001729.1_g000005 Rmu_sc0001729.1_g000007 Rmu_sc0001729.1_g000020 Rmu_sc0001729.1_g000023 Rmu_sc0001793.1_g000015 Rmu_sc0002494.1_g000018 Rmu_sc0002494.1_g000019 Rmu_sc0002604.1_g000022 Rmu_sc0002922.1_g000011 Rmu_sc0003008.1_g000009 Rmu_sc0003221.1_g000061 Rmu_sc0003221.1_g000062 Rmu_sc0003459.1_g000014 Rmu_sc0003480.1_g000015 Rmu_sc0003541.1_g000016 Rmu_sc0003541.1_g000020 Rmu_sc0004035.1_g000001 Rmu_sc0004035.1_g000005 Rmu_sc0004035.1_g000011 Rmu_sc0004142.1_g000004 Rmu_sc0004142.1_g000010 Rmu_sc0004353.1_g000008 Rmu_sc0004616.1_g000009 Rmu_sc0004616.1_g000010 Rmu_sc0005231.1_g000004 Rmu_sc0006380.1_g000025 Rmu_sc0006492.1_g000010 Rmu_sc0006895.1_g000001 Rmu_sc0006895.1_g000002 Rmu_sc0006895.1_g000005 Rmu_sc0007034.1_g000004 Rmu_sc0007104.1_g000006 Rmu_sc0008990.1_g000003 Rmu_sc0008990.1_g000004 Rmu_sc0009106.1_g000003 Rmu_sc0009516.1_g000002 Rmu_sc0009516.1_g000003 Rmu_sc0009516.1_g000004 Rmu_sc0009516.1_g000005 Rmu_sc0009645.1_g000001 Rmu_sc0010274.1_g000001 Rmu_sc0010274.1_g000002 Rmu_sc0010419.1_g000003 Rmu_sc0010917.1_g000017 Rmu_sc0011213.1_g000001 Rmu_sc0011228.1_g000007 Rmu_sc0011538.1_g000011 Rmu_sc0011538.1_g000014 Rmu_sc0011538.1_g000015 Rmu_sc0012211.1_g000006 Rmu_sc0012351.1_g000003 Rmu_sc0012351.1_g000005 Rmu_sc0012915.1_g000002 Rmu_sc0013088.1_g000001 Rmu_sc0013459.1_g000001 Rmu_sc0013765.1_g000004 Rmu_sc0013765.1_g000005 Rmu_sc0014003.1_g000012 Rmu_sc0014003.1_g000014 Rmu_sc0014698.1_g000001 Rmu_sc0015740.1_g000001 Rmu_sc0016429.1_g000003 Rmu_sc0018885.1_g000001 Rmu_sc0020345.1_g000001 Rmu_sc0027791.1_g000001 Rmu_sc0037325.1_g000001 Rmu_ssc0000010.1_g000024 Rmu_ssc0000010.1_g000025 Rmu_ssc0000083.1_g000021 Rmu_ssc0000340.1_g000002 Rmu_ssc0000386.1_g000002 Rmu_ssc0000386.1_g000024 Rmu_ssc0000386.1_g000025 Rmu_ssc0000386.1_g000034 Rmu_ssc0000386.1_g000037 Rmu_ssc0000477.1_g000001
rosa_roxburghii Rroxscaffold_161G00448010 Rroxscaffold_164G00436080 Rroxscaffold_1G00024500 Rroxscaffold_2G00124290 Rroxscaffold_3G00222940 Rroxscaffold_3G00227440 Rroxscaffold_4G00304810 Rroxscaffold_4G00330180 Rroxscaffold_4G00330200 Rroxscaffold_5G00356620 Rroxscaffold_5G00358170 Rroxscaffold_5G00360880 Rroxscaffold_5G00361220 Rroxscaffold_5G00361950 Rroxscaffold_5G00361960 Rroxscaffold_5G00361990 Rroxscaffold_5G00362370 Rroxscaffold_5G00364540 Rroxscaffold_5G00364550 Rroxscaffold_5G00364580 Rroxscaffold_5G00364600 Rroxscaffold_6G00393290 Rroxscaffold_6G00412680 Rroxscaffold_6G00412790 Rroxscaffold_6G00413470 Rroxscaffold_6G00413720 Rroxscaffold_6G00416070 Rroxscaffold_7G00205400
rosa_rugosa Rorug01G0017300 Rorug01G0017400 Rorug01G0018000 Rorug01G0018100 Rorug01G0211500 Rorug02G0638200 Rorug03G0070000 Rorug03G0071200 Rorug03G0081000 Rorug03G0086500 Rorug03G0089300 Rorug03G0095300 Rorug03G0096000 Rorug03G0096000 Rorug04G0055000 Rorug04G0078300 Rorug04G0104100.1 Rorug04G0113800 Rorug04G0126700 Rorug04G0128000 Rorug04G0145900 Rorug04G0148700 Rorug04G0149100 Rorug04G0149100 Rorug04G0149200 Rorug04G0149300 Rorug04G0154900 Rorug04G0180400 Rorug04G0180500 Rorug04G0180700 Rorug04G0180800 Rorug04G0401500 Rorug04G0402100 Rorug05G0288600 Rorug05G0334100 Rorug07G0176400
rosa_samantha Rh1DG043200 Rh1DG043500 Rh1DG043900 Rh1DG222800 Rh3CG039900 Rh3CG156200 Rh3CG328500 Rh3CG328800 Rh3DG165000 Rh4AG208400 Rh4BG205600 Rh4BG213900 Rh4BG243900 Rh4CG198800 Rh4DG168600 Rh4DG180100 Rh4DG180300 Rh4DG180600 Rh4DG181200 Rh4DG181600 Rh4DG181700 Rh4DG183700 Rh4DG184000 Rh4DG184400 Rh4DG184700 Rh4DG206100 Rh4DG206200 Rh4DG206300 Rh4DG215600 Rh4DG238700 Rh4DG238900 Rh5DG390300
rosa_wichuraiana Rw0G005050 Rw0G009260 Rw0G009280 Rw0G015600 Rw0G023570 Rw1G002140 Rw1G002170 Rw1G002210 Rw1G002240 Rw1G019500 Rw2G015490 Rw3G003020 Rw3G010900 Rw3G012030 Rw3G012790 Rw3G013050 Rw3G013540 Rw3G013640 Rw3G013650 Rw3G026050 Rw3G026070 Rw4G015740 Rw4G015790 Rw4G015910 Rw4G015930 Rw4G015950 Rw4G017900 Rw4G017930 Rw4G018440 Rw4G018450 Rw4G018530 Rw4G020720 Rw4G020760 Rw5G019250 Rw5G034370 Rw7G018700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 812
AarI CACCTGC 1 cut(s) 452
AasI GACNNNNNNGTC 1 cut(s) 1447
Acc36I ACCTGC 2 cut(s) 452, 1417
Acc65I GGTACC 1 cut(s) 1498
AccB1I GGYRCC 2 cut(s) 844, 1498
AccBSI CCGCTC 1 cut(s) 297
AciI CCGC 4 cut(s) 297, 1048, 1262, 1494
AclWI GGATC 2 cut(s) 638, 1768
AcsI RAATTY 4 cut(s) 263, 480, 750, 1704
AcuI CTGAAG 2 cut(s) 366, 1583
AfaI GTAC 4 cut(s) 1218, 1284, 1395, 1500
AfiI CCNNNNNNNGG 3 cut(s) 397, 1115, 1762
AflII CTTAAG 1 cut(s) 581
AjnI CCWGG 1 cut(s) 229
Alw21I GWGCWC 1 cut(s) 219
Alw26I GTCTC 3 cut(s) 159, 599, 1480
AlwI GGATC 2 cut(s) 638, 1768
Ama87I CYCGRG 5 cut(s) 596, 914, 1233, 1521, 1755
ApeKI GCWGC 6 cut(s) 203, 318, 323, 1370, 1491, 1508
ApoI RAATTY 4 cut(s) 263, 480, 750, 1704
Asp700I GAANNNNTTC 1 cut(s) 10
Asp718I GGTACC 1 cut(s) 1498
AspLEI GCGC 1 cut(s) 323
AspS9I GGNCC 2 cut(s) 236, 1429
AsuC2I CCSGG 2 cut(s) 1756, 1757
AsuHPI GGTGA 4 cut(s) 58, 430, 578, 1045
AvaI CYCGRG 5 cut(s) 596, 914, 1233, 1521, 1755
AvaII GGWCC 2 cut(s) 236, 1429
BanI GGYRCC 2 cut(s) 844, 1498
BanII GRGCYC 1 cut(s) 219
BauI CACGAG 1 cut(s) 292
BbsI GAAGAC 3 cut(s) 354, 1077, 1445
Bbv12I GWGCWC 1 cut(s) 219
BbvCI CCTCAGC 1 cut(s) 872
BbvI GCAGC 6 cut(s) 190, 305, 310, 1357, 1503, 1520
BccI CCATC 7 cut(s) 110, 318, 557, 943, 1241, 1460, 1633
BceAI ACGGC 1 cut(s) 1154
BciT130I CCWGG 1 cut(s) 231
BcnI CCSGG 2 cut(s) 1756, 1757
BcoDI GTCTC 3 cut(s) 159, 599, 1480
BfaI CTAG 3 cut(s) 959, 1157, 1804
BfmI CTRYAG 4 cut(s) 352, 462, 907, 1043
BfrI CTTAAG 1 cut(s) 581
BfuAI ACCTGC 2 cut(s) 452, 1417
BglII AGATCT 2 cut(s) 613, 1572
BisI GCNGC 6 cut(s) 204, 319, 324, 1371, 1492, 1509
BlpI GCTNAGC 1 cut(s) 1595
BlsI GCNGC 6 cut(s) 205, 320, 325, 1372, 1493, 1510
BmcAI AGTACT 1 cut(s) 1218
Bme1390I CCNGG 3 cut(s) 231, 1756, 1757
Bme18I GGWCC 2 cut(s) 236, 1429
BmeT110I CYCGRG 5 cut(s) 596, 914, 1233, 1521, 1755
BmgT120I GGNCC 2 cut(s) 236, 1429
BmiI GGNNCC 3 cut(s) 846, 1388, 1500
BmrFI CCNGG 3 cut(s) 231, 1756, 1757
BmrI ACTGGG 1 cut(s) 1385
BmsI GCATC 2 cut(s) 178, 707
BmuI ACTGGG 1 cut(s) 1385
BpiI GAAGAC 3 cut(s) 354, 1077, 1445
BplI GAGNNNNNCTC 1 cut(s) 1780
BpmI CTGGAG 1 cut(s) 1589
Bpu10I CCTNAGC 5 cut(s) 48, 576, 626, 872, 1184
Bpu1102I GCTNAGC 1 cut(s) 1595
BpuEI CTTGAG 3 cut(s) 437, 1335, 1561
BpuMI CCSGG 2 cut(s) 1756, 1757
Bsa29I ATCGAT 1 cut(s) 1242
BsaBI GATNNNNATC 1 cut(s) 881
BsaJI CCNNGG 5 cut(s) 192, 468, 1114, 1755, 1756
Bsc4I CCNNNNNNNGG 3 cut(s) 397, 1115, 1762
Bse1I ACTGG 3 cut(s) 1035, 1391, 1780
Bse3DI GCAATG 3 cut(s) 264, 620, 1095
Bse8I GATNNNNATC 1 cut(s) 881
BseBI CCWGG 1 cut(s) 231
BseCI ATCGAT 1 cut(s) 1242
BseDI CCNNGG 5 cut(s) 192, 468, 1114, 1755, 1756
BseGI GGATG 4 cut(s) 91, 364, 722, 882
BseJI GATNNNNATC 1 cut(s) 881
BseLI CCNNNNNNNGG 3 cut(s) 397, 1115, 1762
BseMI GCAATG 3 cut(s) 264, 620, 1095
BseMII CTCAG 6 cut(s) 6, 567, 842, 863, 1473, 1586
BseNI ACTGG 3 cut(s) 1035, 1391, 1780
BseRI GAGGAG 2 cut(s) 485, 1558
BseXI GCAGC 6 cut(s) 190, 305, 310, 1357, 1503, 1520
BseYI CCCAGC 1 cut(s) 92
BsgI GTGCAG 3 cut(s) 1356, 1428, 1527
BshNI GGYRCC 2 cut(s) 844, 1498
BshVI ATCGAT 1 cut(s) 1242
BsiHKAI GWGCWC 1 cut(s) 219
BsiHKCI CYCGRG 5 cut(s) 596, 914, 1233, 1521, 1755
BsiSI CCGG 1 cut(s) 1756
BslFI GGGAC 3 cut(s) 110, 1501, 1738
BslI CCNNNNNNNGG 3 cut(s) 397, 1115, 1762
BsmAI GTCTC 3 cut(s) 159, 599, 1480
BsmFI GGGAC 3 cut(s) 110, 1501, 1738
BsmI GAATGC 2 cut(s) 873, 1313
BsoBI CYCGRG 5 cut(s) 596, 914, 1233, 1521, 1755
Bsp1286I GDGCHC 1 cut(s) 219
Bsp143I GATC 6 cut(s) 288, 613, 630, 1381, 1572, 1760
Bsp1720I GCTNAGC 1 cut(s) 1595
Bsp19I CCATGG 1 cut(s) 1114
BspACI CCGC 4 cut(s) 297, 1048, 1262, 1494
BspCNI CTCAG 6 cut(s) 7, 568, 843, 864, 1472, 1587
BspDI ATCGAT 1 cut(s) 1242
BspLI GGNNCC 3 cut(s) 846, 1388, 1500
BspMAI CTGCAG 1 cut(s) 911
BspMI ACCTGC 2 cut(s) 452, 1417
BspPI GGATC 2 cut(s) 638, 1768
BspT107I GGYRCC 2 cut(s) 844, 1498
BspTI CTTAAG 1 cut(s) 581
BsrBI CCGCTC 1 cut(s) 297
BsrDI GCAATG 3 cut(s) 264, 620, 1095
BsrI ACTGG 3 cut(s) 1035, 1391, 1780
BssECI CCNNGG 5 cut(s) 192, 468, 1114, 1755, 1756
BssMI GATC 6 cut(s) 288, 613, 630, 1381, 1572, 1760
BssSI CACGAG 1 cut(s) 292
BssT1I CCWWGG 2 cut(s) 192, 1114
Bst2BI CACGAG 1 cut(s) 292
Bst2UI CCWGG 1 cut(s) 231
Bst4CI ACNGT 8 cut(s) 41, 978, 1002, 1018, 1076, 1337, 1405, 1449
BstAFI CTTAAG 1 cut(s) 581
BstC8I GCNNGC 4 cut(s) 907, 911, 1190, 1360
BstDSI CCRYGG 1 cut(s) 1114
BstENI CCTNNNNNAGG 1 cut(s) 395
BstF5I GGATG 4 cut(s) 91, 364, 722, 882
BstHHI GCGC 1 cut(s) 323
BstKTI GATC 6 cut(s) 291, 616, 633, 1384, 1575, 1763
BstMAI GTCTC 3 cut(s) 159, 599, 1480
BstMBI GATC 6 cut(s) 288, 613, 630, 1381, 1572, 1760
BstMWI GCNNNNNNNGC 2 cut(s) 515, 1166
BstNI CCWGG 1 cut(s) 231
BstSCI CCNGG 3 cut(s) 229, 1754, 1755
BstSFI CTRYAG 4 cut(s) 352, 462, 907, 1043
BstV1I GCAGC 6 cut(s) 190, 305, 310, 1357, 1503, 1520
BstV2I GAAGAC 3 cut(s) 354, 1077, 1445
BstX2I RGATCY 2 cut(s) 613, 1572
BstYI RGATCY 2 cut(s) 613, 1572
Bsu15I ATCGAT 1 cut(s) 1242
BsuTUI ATCGAT 1 cut(s) 1242
BtgI CCRYGG 1 cut(s) 1114
BtsCI GGATG 4 cut(s) 91, 364, 722, 882
BtsIMutI CAGTG 5 cut(s) 432, 848, 998, 1410, 1445
BveI ACCTGC 2 cut(s) 452, 1417
Cac8I GCNNGC 4 cut(s) 907, 911, 1190, 1360
CfoI GCGC 1 cut(s) 323
Cfr13I GGNCC 2 cut(s) 236, 1429
Cfr9I CCCGGG 1 cut(s) 1755
ClaI ATCGAT 1 cut(s) 1242
Csp6I GTAC 4 cut(s) 1217, 1283, 1394, 1499
CspCI CAANNNNNGTGG 2 cut(s) 870, 905
CviAII CATG 7 cut(s) 277, 661, 782, 886, 1115, 1367, 1513
CviQI GTAC 4 cut(s) 1217, 1283, 1394, 1499
DpnI GATC 6 cut(s) 290, 615, 632, 1383, 1574, 1762
DpnII GATC 6 cut(s) 288, 613, 630, 1381, 1572, 1760
DrdI GACNNNNNNGTC 1 cut(s) 1447
DseDI GACNNNNNNGTC 1 cut(s) 1447
Ecl136II GAGCTC 1 cut(s) 217
Eco130I CCWWGG 2 cut(s) 192, 1114
Eco24I GRGCYC 1 cut(s) 219
Eco32I GATATC 1 cut(s) 967
Eco47I GGWCC 2 cut(s) 236, 1429
Eco53kI GAGCTC 1 cut(s) 217
Eco57I CTGAAG 2 cut(s) 366, 1583
Eco88I CYCGRG 5 cut(s) 596, 914, 1233, 1521, 1755
EcoICRI GAGCTC 1 cut(s) 217
EcoNI CCTNNNNNAGG 1 cut(s) 395
EcoRI GAATTC 1 cut(s) 480
EcoRII CCWGG 1 cut(s) 229
EcoRV GATATC 1 cut(s) 967
EcoT14I CCWWGG 2 cut(s) 192, 1114
EcoT22I ATGCAT 1 cut(s) 711
EcoT38I GRGCYC 1 cut(s) 219
ErhI CCWWGG 2 cut(s) 192, 1114
FaeI CATG 7 cut(s) 280, 664, 785, 889, 1118, 1370, 1516
FaqI GGGAC 3 cut(s) 110, 1501, 1738
FatI CATG 7 cut(s) 276, 660, 781, 885, 1114, 1366, 1512
FauI CCCGC 1 cut(s) 1487
Fnu4HI GCNGC 6 cut(s) 204, 319, 324, 1371, 1492, 1509
FokI GGATG 4 cut(s) 98, 371, 709, 889
FriOI GRGCYC 1 cut(s) 219
Fsp4HI GCNGC 6 cut(s) 204, 319, 324, 1371, 1492, 1509
FspBI CTAG 3 cut(s) 959, 1157, 1804
GlaI GCGC 1 cut(s) 322
GluI GCNGC 6 cut(s) 204, 319, 324, 1371, 1492, 1509
GsaI CCCAGC 1 cut(s) 96
GsuI CTGGAG 1 cut(s) 1589
HapII CCGG 1 cut(s) 1756
HhaI GCGC 1 cut(s) 323
Hin1II CATG 7 cut(s) 280, 664, 785, 889, 1118, 1370, 1516
Hin6I GCGC 1 cut(s) 321
HinP1I GCGC 1 cut(s) 321
HindIII AAGCTT 1 cut(s) 814
HinfI GANTC 8 cut(s) 122, 169, 197, 569, 893, 1085, 1148, 1236
HpaII CCGG 1 cut(s) 1756
HphI GGTGA 4 cut(s) 58, 430, 578, 1045
Hpy166II GTNNAC 3 cut(s) 998, 1036, 1730
Hpy188I TCNGA 9 cut(s) 16, 85, 174, 346, 645, 1090, 1110, 1433, 1765
Hpy8I GTNNAC 3 cut(s) 998, 1036, 1730
HpyAV CCTTC 5 cut(s) 73, 136, 468, 1085, 1273
HpyCH4III ACNGT 8 cut(s) 41, 978, 1002, 1018, 1076, 1337, 1405, 1449
HpyF10VI GCNNNNNNNGC 2 cut(s) 515, 1166
Hsp92II CATG 7 cut(s) 280, 664, 785, 889, 1118, 1370, 1516
HspAI GCGC 1 cut(s) 321
KpnI GGTACC 1 cut(s) 1502
Kzo9I GATC 6 cut(s) 288, 613, 630, 1381, 1572, 1760
LmnI GCTCC 4 cut(s) 214, 222, 1174, 1392
Lsp1109I GCAGC 6 cut(s) 190, 305, 310, 1357, 1503, 1520
LweI GCATC 2 cut(s) 178, 707
MaeI CTAG 3 cut(s) 959, 1157, 1804
MaeIII GTNAC 1 cut(s) 952
MalI GATC 6 cut(s) 290, 615, 632, 1383, 1574, 1762
MbiI CCGCTC 1 cut(s) 297
MboI GATC 6 cut(s) 288, 613, 630, 1381, 1572, 1760
MboII GAAGA 9 cut(s) 305, 359, 623, 1067, 1070, 1073, 1076, 1082, 1450
MfeI CAATTG 2 cut(s) 530, 900
MflI RGATCY 2 cut(s) 613, 1572
MhlI GDGCHC 1 cut(s) 219
MlyI GAGTC 3 cut(s) 1094, 1142, 1245
MmeI TCCRAC 5 cut(s) 457, 924, 1068, 1114, 1584
Mph1103I ATGCAT 1 cut(s) 711
MroXI GAANNNNTTC 1 cut(s) 10
MseI TTAA 5 cut(s) 554, 582, 704, 728, 818
MspA1I CMGCKG 3 cut(s) 203, 1048, 1494
MspCI CTTAAG 1 cut(s) 581
MspI CCGG 1 cut(s) 1756
MspR9I CCNGG 3 cut(s) 231, 1756, 1757
MunI CAATTG 2 cut(s) 530, 900
Mva1269I GAATGC 2 cut(s) 873, 1313
MvaI CCWGG 1 cut(s) 231
MwoI GCNNNNNNNGC 2 cut(s) 515, 1166
NciI CCSGG 2 cut(s) 1756, 1757
NcoI CCATGG 1 cut(s) 1114
NdeII GATC 6 cut(s) 288, 613, 630, 1381, 1572, 1760
NlaIII CATG 7 cut(s) 280, 664, 785, 889, 1118, 1370, 1516
NlaIV GGNNCC 3 cut(s) 846, 1388, 1500
NmeAIII GCCGAG 1 cut(s) 493
NsiI ATGCAT 1 cut(s) 711
PaeR7I CTCGAG 3 cut(s) 596, 914, 1233
PaqCI CACCTGC 1 cut(s) 452
PctI GAATGC 2 cut(s) 873, 1313
PdmI GAANNNNTTC 1 cut(s) 10
PfeI GAWTC 5 cut(s) 122, 169, 197, 569, 893
PkrI GCNGC 6 cut(s) 205, 320, 325, 1372, 1493, 1510
PleI GAGTC 3 cut(s) 1093, 1142, 1244
PpsI GAGTC 3 cut(s) 1093, 1142, 1244
PsiI TTATAA 1 cut(s) 812
Psp124BI GAGCTC 1 cut(s) 219
Psp6I CCWGG 1 cut(s) 229
PspFI CCCAGC 1 cut(s) 92
PspGI CCWGG 1 cut(s) 229
PspN4I GGNNCC 3 cut(s) 846, 1388, 1500
PspPI GGNCC 2 cut(s) 236, 1429
PspXI VCTCGAGB 1 cut(s) 1233
PstI CTGCAG 1 cut(s) 911
PsuI RGATCY 2 cut(s) 613, 1572
PvuII CAGCTG 1 cut(s) 203
RsaI GTAC 4 cut(s) 1218, 1284, 1395, 1500
RsaNI GTAC 4 cut(s) 1217, 1283, 1394, 1499
SacI GAGCTC 1 cut(s) 219
SaqAI TTAA 5 cut(s) 554, 582, 704, 728, 818
SatI GCNGC 6 cut(s) 204, 319, 324, 1371, 1492, 1509
Sau3AI GATC 6 cut(s) 288, 613, 630, 1381, 1572, 1760
Sau96I GGNCC 2 cut(s) 236, 1429
SbfI CCTGCAGG 1 cut(s) 911
ScaI AGTACT 1 cut(s) 1218
SchI GAGTC 3 cut(s) 1094, 1142, 1245
ScrFI CCNGG 3 cut(s) 231, 1756, 1757
SdaI CCTGCAGG 1 cut(s) 911
SduI GDGCHC 1 cut(s) 219
SfaNI GCATC 2 cut(s) 178, 707
SfcI CTRYAG 4 cut(s) 352, 462, 907, 1043
Sfr274I CTCGAG 3 cut(s) 596, 914, 1233
SinI GGWCC 2 cut(s) 236, 1429
SlaI CTCGAG 3 cut(s) 596, 914, 1233
SmaI CCCGGG 1 cut(s) 1757
SmlI CTYRAG 7 cut(s) 416, 581, 596, 914, 1233, 1350, 1576
SmoI CTYRAG 7 cut(s) 416, 581, 596, 914, 1233, 1350, 1576
Sse8387I CCTGCAGG 1 cut(s) 911
SsiI CCGC 4 cut(s) 297, 1048, 1262, 1494
SspMI CTAG 3 cut(s) 959, 1157, 1804
SstI GAGCTC 1 cut(s) 219
StyD4I CCNGG 3 cut(s) 229, 1754, 1755
StyI CCWWGG 2 cut(s) 192, 1114
TaaI ACNGT 8 cut(s) 41, 978, 1002, 1018, 1076, 1337, 1405, 1449
TatI WGTACW 2 cut(s) 1216, 1393
TfiI GAWTC 5 cut(s) 122, 169, 197, 569, 893
Tru1I TTAA 5 cut(s) 554, 582, 704, 728, 818
Tru9I TTAA 5 cut(s) 554, 582, 704, 728, 818
TscAI CASTG 5 cut(s) 432, 855, 1005, 1410, 1452
TseI GCWGC 6 cut(s) 203, 318, 323, 1370, 1491, 1508
TspDTI ATGAA 8 cut(s) 275, 293, 375, 1010, 1083, 1110, 1527, 1640
TspGWI ACGGA 1 cut(s) 395
TspMI CCCGGG 1 cut(s) 1755
TspRI CASTG 5 cut(s) 432, 855, 1005, 1410, 1452
Vha464I CTTAAG 1 cut(s) 581
VpaK11BI GGWCC 2 cut(s) 236, 1429
XagI CCTNNNNNAGG 1 cut(s) 395
XapI RAATTY 4 cut(s) 263, 480, 750, 1704
XhoI CTCGAG 3 cut(s) 596, 914, 1233
XmaI CCCGGG 1 cut(s) 1755
XmnI GAANNNNTTC 1 cut(s) 10
XspI CTAG 3 cut(s) 959, 1157, 1804
ZrmI AGTACT 1 cut(s) 1218
Zsp2I ATGCAT 1 cut(s) 711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.