RchiOBHm_Chr1g0317871

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
5394112 .. 5398939
4828 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54816

Sequence Viewer

Length: 4008 bp
ATGGCTGAATTTCTCACTTTTGGTGCTCAAGAATTGCTGAAGAAAGTGGCTTTACTTGCCGCTCAAGAGTTCGATCTAGTATGGGGATTCAATGGAGAAATAACAAAGCTGCGTGAGTCGGTGCTTATGCTTGAGGCTGTGCTACAAGATGCCGAACATCCACGACAAGATCAGGGAGAGGCTGTGAAGCACTGGGTAAAGAAGCTTGAAGTCATAGCTCAGCGTGCTGATGATGTGCTGGATGATTATGGATATGAGCTTCTACGGCGTAAGGTGCAACTGCGAAATCAGATGAAGAAAAAGGTGCAGAACTTTTTTTCCATCTCCAATCCCATCTTTTTTCGTGTTAAAATGGCACATAAAATTAAGAAAATCAACACATCTTTGGATGAGTTGAATAAAAAGGCAAGTACTATTGGCTTAGTTGCTAGACTATCCTTAGATGCAACAACTTCCCATGGTATAAGCATTGACAGGGAAACCTACTCTATGCAAGATGAAAACAATATCATTGGAAGGGACGATGTTGTGGCAGATATAGTTCAAGCCCTGACCAAATCAAACCTCAATCTGCAAAGTGATCTCTCGGTTCTGGCCATTGTGGGTATGGGAGGGCTTGGAAAGACAACTTTGGCTAAATCAATATATCATGAATCAGAGATAAGTAGGCACTTTGAGAAAAAGATGTGGATATGTGTATCTACCATTTTTGAAGTCAATTCAATTTTGAGAGGGATCTTGGAATATCTTAAACCAGAAAATGCTGCAGTGAAAGCTATAGATGCAATATGTAATATTCTCCGAGAAGAGCTGAAAGGAAAGAGATACCTTCTTATACTTGATGATGTATGGAATGAAGATGCCGAAAAATGGAAACGTTTGAAGGATTGTTTGCTAGGAATTACCAATGCCCAAGGAAGCAGCATTATTGTCACTACTCGTAGTGACAAAGTTGCAAAAACGGTGGAGACCCTTCCTAGGTGTGATTTGAGAAAACTATCAGATGATGAGTGTTGGCTTATATTGAAGAATAAAGCAGTTCCAGTCGAAAGTGTTCCTATACTTGAAGATCAAGAGACAATTGGAAGGGAGATTGCCAAAAAGTGTGGAGGCGTACCGTTAGTGGCAAAGGTATTAGGAAACATCATGCTCTCTAAAACGAGCAATGAATGGAGTACAATTATGGAAAGTAAAATATGGGATTTACCGGAAGAAGAAGACAGAATCATGTCGATTTTAAAGTTGAGTTTTGATGAATTGAAATTTTCATCATTGAAACAGTGTTTTGCATACTGTTCAATGTTCGTCAAAGACTCTGTAATAAAAAAGGATGACTTAGTCCAACTTTGGATGGCTCAAGGATGGCTTCACCCCACCAAAAGTAATATGGAGATGGAGGATAGAGGGAACGAATATTTCAACATTTTATCAGAAAAATCCCTTTTTGAAGACGTTAGAACTGATTATAAGGGTAATACAACATGCAAGATGCACGATCTTGTGCATGACCTTGCAGGACAAGTGTCAAACATGACAAGCAGCCGCTCACTATTTTCAAAGGGAGAAGCACTTGGGAACACCTTGCCTAACTTTAGATCTTTGCGTGTGTTAAATTTATACAAGGCAGACATTGACAAGTTGCCGAGTTCAATTGGAAAGTTGACACACTTGAGGTATCTGAATGTTATGAAAACAAATGTGAAAGCATTTCCAAAATCTATTGGTCAGCTTTATTACCTTGAGACGTTTAAAATGCCTTATCATGTTGAAGAGTTCCCAAAGATGATTGCTGATATGATCAACTTGAGACATGTTTATTTTGGTAAATATGCGAATGTTCCGGTTGGGGTATTGGGAGGATTGACTAATCTCAGAACATTACCTTGTCTGAAGGTGGGTAAGGAGACTGGACCTAGAATTGAGGAACTGGGTGGGTTAAGCCATTTGAGAGGCACCTTATCTATCTATAATCTGGAGCATGTAAGAGATGGAGAAGAAGCAGTGAATGCAAAGTTAGTGGATAAGAAACATATACGCAAGTTAACTCTCGACTGGAAGCTTAGCAATAGACCAAGCAACAATGTTGACAATGAGGATGATGTACTTGAAGGTCTGCGACCACATTGTAATTTGGAAATTTTGAAGATTCAGGGGTTTATGGGTGTTAAGTTTCCATCATGGTTATTGCTTGCCTGCAACTTGAAAGAAATTGAATTAGCAGGGTGCAACAAATGCGAAGGATTTCCAATACTGGGCCATCTGCCCAATCTTATACATGTTAAGATGGGGGACATGCAGAACTTAAGGTGCTTGGGGTCTGAGTTTTATGGTTACGATCAGATTTCAAGTGCAACAACAAGTGACGGGAGAAAGACTTTGTTTCCTGCCTTGAGATCATTACATATTTGGAATGCCGAGAATCTAATAGATTGGATGGAAGCAGGGGAAGTGATGCTGACGGCAGAAAAATTAAGGGTGTTTCCTTACCTTGAGGACCTGATCCTGGAGCGGTGTAAGCAATTGAGAAGTGCTCCCAGTCATTTTCCATCTCTCAAGCTGTTGTCGATAGGAGGAGTGGAAAGTGAAGGGACGTTAAGAAACAACAAGAATCTTGAATCTCTGAATATAAGCGACTGTCCGGAGTTAAGTTGCATTGCTCCCCATGGATTTAACTGCTACGCATCTCTTCAGATACTGAGAATTAGGAAGTGTCCTAAGTTGAGGTATTTATCTGATGGGCCACTCCCACTCTCTCTCAAGGAGTTGGACATACAAAATTGCTCCAGTCTAGAGTCTCCCATCCCTGAGCAAGGCGGTCTCCCATCTCTGCGCAGATTGCAAATATCCGAGTGTTCTCAGTTATCCAGTTTACCTGATGGGCTACAATACTGCACATCTCTTCAAGAATTGCGAATATCCAAGTGTTCTCAGTTATCCAGTTTACCTGATGGGCTACAATACTGCACATCTCTTCAAGAATTGCTTATATGGAGCTGCCCAACGATAATGTCCATTCCAGCCCAATACTGCACATCTCTTCGAGAACTGGACATAGGGAGCTGCCCAAAGATAACATCCATTCCAATTCCATCTGCGGGCCTCCCGTCCCTTGGTCGACTGGTGCTTATGCAGTGTCCCGAATTATCAAGCCTACCGAGTGGACTAGGGTGCTGCACCTCTCTTGTTGATTTGACGGTAAGAGAGTGCCCTAAGGTAACATCCATTCCAATTGGCAGTCTCAGTACAACCCTCCGATACTTGTCTGTAAGTAATCCAGAGTCTCTTCCAATTTTACACGGCGGCTTCACATCCCTCCGTGAATTGCAAATCAAGAGATGTCAAAGTACACAAATTGATCTGCGATTTTGTCAAATCCTCGTCTCTCTTGAGGATTTGACAATAAGTAATTGTCCTAATCTAGAGACTGTTCCAAGTTTAGACAAGCTCACATCCCTCCGTAGATTGGAGATTTATGATTGTTCCAGATTAACATGTCTACCCGGTGGGTTAGCAATGGCATCCCCGCATGTATTCACCCGTCTCAAGTACTTGAGAATTGGTCCGTTTTGGAATGAGCTGGATTCATTCCCGGCTCTTCAGGTTCTACCACAACTTGAATCATTATGGATCTACGGGTGGCCGAAGCTCAAGTCTCTGCCTGAACAAATTCAACACTTGACGTCTTTGACCGAATTGGGGATAAATGAGTTTGAGGGAGTGGAGGCTATTCCAGAATGGTTGGGAAACCTTGCATCTCTTCGCTCCTTGTATATTTGGGAGTGCAAGAATCTGATGTATCTACCTTCCGTCCAAGCTATGCAACGCCTCACCAAATTAGATTCGCTATACATCTCCAATTGTCCCCTTTTGAGCGAAAGATGCACTGTGGACAGCGGCCCAGAGTGGCCTAAGATTTCTCATATTCCACACATCTATGGTAACTCTTTCCTCTACCTCTTTTCTGAATTGGTCAGTATTCATATCACTTTAATTGTGCTTGTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

1335

Amino Acids

150.34

Weight (kDa)

6.57

Isoelectric Point (pI)

50.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 11 - 97 8.8e-19 Rx N-terminal domain
NB-ARC PF00931 188 - 348 5.1e-36 NB-ARC domain
WHD_DRP PF23559 434 - 505 1.1e-22 Disease resistance protein Winged helix domain
LRR_14 PF23598 516 - 855 2.2e-29 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 640 - 765 4.3e-35 R13L1/DRL21 LRRs
LRR_R13L1-DRL21 PF25019 1104 - 1160 7.4e-07 R13L1/DRL21 LRRs
LRR_14 PF23598 1139 - 1286 6.4e-09 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 1221 - 1286 1.1e-07 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000029)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13530 FvH4_4g18270 FvH4_6g12200 FvH4_6g12460 FvH4_6g12461 FvH4_6g13450 FvH4_6g15090 FvH4_6g15220 FvH4_6g15230 FvH4_6g15250 FvH4_6g15251 FvH4_6g15340 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47980 FvH4_6g47980 FvH4_6g47980 FvH4_6g48170 FvH4_6g48310 FvH4_6g48310 FvH4_6g48850 FvH4_6g48881 FvH4_7g11830
malus_domestica MD02G1059900.v1.1 MD02G1069600.v1.1 MD02G1069700.v1.1 MD02G1070100.v1.1 MD02G1070200.v1.1 MD02G1070300.v1.1 MD02G1070800.v1.1 MD02G1070900.v1.1 MD02G1071200.v1.1 MD02G1071400.v1.1 MD02G1071900.v1.1 MD02G1075200.v1.1 MD03G1048000.v1.1 MD03G1049100.v1.1 MD03G1049200.v1.1 MD03G1052500.v1.1 MD03G1054100.v1.1 MD03G1054300.v1.1 MD03G1054400.v1.1 MD04G1113400.v1.1 MD04G1211100.v1.1 MD04G1211200.v1.1 MD05G1174900.v1.1 MD05G1175000.v1.1 MD05G1175900.v1.1 MD05G1243400.v1.1 MD07G1031500.v1.1 MD07G1031600.v1.1 MD07G1032500.v1.1 MD11G1046800.v1.1 MD11G1046900.v1.1 MD11G1047000.v1.1 MD11G1050400.v1.1 MD11G1050600.v1.1 MD11G1050800.v1.1 MD11G1051100.v1.1 MD11G1051600.v1.1 MD11G1051700.v1.1 MD11G1054600.v1.1 MD11G1055600.v1.1 MD11G1055700.v1.1 MD11G1055800.v1.1 MD11G1056000.v1.1 MD12G1126600.v1.1 MD12G1126700.v1.1 MD12G1126800.v1.1 MD12G1127300.v1.1 MD12G1127600.v1.1 MD12G1127900.v1.1 MD12G1128100.v1.1 MD12G1128300.v1.1 MD15G1261500.v1.1
prunus_persica Prupe.1G010700_v2.0.a1 Prupe.1G010800_v2.0.a1 Prupe.1G011000_v2.0.a1 Prupe.1G159600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163700_v2.0.a1 Prupe.1G163700_v2.0.a1 Prupe.1G163800_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G235500_v2.0.a1 Prupe.2G067400_v2.0.a1 Prupe.2G067500_v2.0.a1 Prupe.2G111700_v2.0.a1 Prupe.2G111800_v2.0.a1 Prupe.3G012000_v2.0.a1 Prupe.6G243400_v2.0.a1 Prupe.6G243500_v2.0.a1 Prupe.6G243600_v2.0.a1 Prupe.6G243700_v2.0.a1 Prupe.6G243800_v2.0.a1 Prupe.6G243900_v2.0.a1
pyrus_communis pycom02g04860 pycom02g04880 pycom02g04890 pycom02g05510 pycom02g05520 pycom02g05600 pycom02g05930 pycom02g06000 pycom02g06010 pycom03g03800 pycom03g03860 pycom03g03880 pycom03g03890 pycom03g03910 pycom03g03920 pycom03g04200 pycom03g04290 pycom03g04300 pycom03g04310 pycom03g04320 pycom03g09260 pycom04g10150 pycom04g10160 pycom04g10170 pycom05g16180 pycom05g16190 pycom05g16240 pycom05g21980 pycom05g21990 pycom07g02280 pycom11g03800 pycom11g03810 pycom11g04080 pycom11g04140 pycom11g04150 pycom11g04160 pycom11g04570 pycom11g04580 pycom11g04590 pycom11g04610 pycom12g12470 pycom12g12490 pycom13g22050
rosa_chinensis RchiOBHm_Chr1g0317761 RchiOBHm_Chr1g0317821 RchiOBHm_Chr1g0317831 RchiOBHm_Chr1g0317871 RchiOBHm_Chr1g0350501 RchiOBHm_Chr2g0107631 RchiOBHm_Chr3g0452091 RchiOBHm_Chr3g0464001 RchiOBHm_Chr3g0464281 RchiOBHm_Chr3g0466331 RchiOBHm_Chr3g0467341 RchiOBHm_Chr3g0467381 RchiOBHm_Chr3g0467731 RchiOBHm_Chr3g0468291 RchiOBHm_Chr3g0468321 RchiOBHm_Chr3g0468341 RchiOBHm_Chr3g0468391 RchiOBHm_Chr3g0468411 RchiOBHm_Chr3g0468571 RchiOBHm_Chr3g0468591 RchiOBHm_Chr3g0490721 RchiOBHm_Chr3g0490751 RchiOBHm_Chr3g0490761 RchiOBHm_Chr3g0490771 RchiOBHm_Chr3g0490951 RchiOBHm_Chr3g0491001 RchiOBHm_Chr3g0491011 RchiOBHm_Chr4g0412461 RchiOBHm_Chr4g0414161 RchiOBHm_Chr4g0414181 RchiOBHm_Chr4g0414191 RchiOBHm_Chr4g0414281 RchiOBHm_Chr4g0414441 RchiOBHm_Chr4g0414521 RchiOBHm_Chr4g0414531 RchiOBHm_Chr4g0417011 RchiOBHm_Chr4g0417021 RchiOBHm_Chr4g0417041 RchiOBHm_Chr4g0417071 RchiOBHm_Chr4g0417101 RchiOBHm_Chr4g0417531 RchiOBHm_Chr4g0417641 RchiOBHm_Chr4g0417651 RchiOBHm_Chr4g0417701 RchiOBHm_Chr4g0417731 RchiOBHm_Chr4g0417741 RchiOBHm_Chr4g0417781 RchiOBHm_Chr4g0418751 RchiOBHm_Chr4g0418791 RchiOBHm_Chr4g0418861 RchiOBHm_Chr4g0418881 RchiOBHm_Chr4g0418901 RchiOBHm_Chr4g0422451 RchiOBHm_Chr4g0422461 RchiOBHm_Chr4g0422471 RchiOBHm_Chr4g0422541 RchiOBHm_Chr4g0422561 RchiOBHm_Chr4g0422591 RchiOBHm_Chr4g0422651 RchiOBHm_Chr4g0422661 RchiOBHm_Chr5g0003251 RchiOBHm_Chr5g0003261 RchiOBHm_Chr5g0055871 RchiOBHm_Chr7g0204701 RchiOBHm_Chr7g0204741
rosa_laevigata RLG00000007607 RLG00000007932 RLG00000017606 RLG00000024418 RLG00000025629 RLG00000030586
rosa_multiflora Rmu_co7959167.1_g000001 Rmu_co8021330.1_g000001 Rmu_co8132128.1_g000001 Rmu_co8224744.1_g000001 Rmu_co8281865.1_g000001 Rmu_co8298487.1_g000001 Rmu_co8319035.1_g000001 Rmu_co8380035.1_g000001 Rmu_co8385371.1_g000001 Rmu_co8398173.1_g000001 Rmu_co8423363.1_g000001 Rmu_co8438275.1_g000001 Rmu_co8474729.1_g000001 Rmu_sc0000057.1_g000008 Rmu_sc0000350.1_g000023 Rmu_sc0000480.1_g000005 Rmu_sc0000654.1_g000021 Rmu_sc0000654.1_g000029 Rmu_sc0000654.1_g000032 Rmu_sc0000654.1_g000041 Rmu_sc0000654.1_g000045 Rmu_sc0000772.1_g000002 Rmu_sc0000772.1_g000041 Rmu_sc0000808.1_g000040 Rmu_sc0000830.1_g000062 Rmu_sc0000830.1_g000065 Rmu_sc0000830.1_g000072 Rmu_sc0000830.1_g000073 Rmu_sc0000935.1_g000020 Rmu_sc0000935.1_g000024 Rmu_sc0000935.1_g000026 Rmu_sc0000935.1_g000027 Rmu_sc0000935.1_g000031 Rmu_sc0000935.1_g000033 Rmu_sc0000962.1_g000033 Rmu_sc0000962.1_g000036 Rmu_sc0000962.1_g000063 Rmu_sc0000962.1_g000064 Rmu_sc0000962.1_g000065 Rmu_sc0001029.1_g000007 Rmu_sc0001063.1_g000014 Rmu_sc0001149.1_g000010 Rmu_sc0001149.1_g000011 Rmu_sc0001358.1_g000009 Rmu_sc0001448.1_g000003 Rmu_sc0001448.1_g000004 Rmu_sc0001729.1_g000005 Rmu_sc0001729.1_g000007 Rmu_sc0001729.1_g000020 Rmu_sc0001729.1_g000023 Rmu_sc0001793.1_g000015 Rmu_sc0002494.1_g000018 Rmu_sc0002494.1_g000019 Rmu_sc0002604.1_g000022 Rmu_sc0002922.1_g000011 Rmu_sc0003008.1_g000009 Rmu_sc0003221.1_g000061 Rmu_sc0003221.1_g000062 Rmu_sc0003459.1_g000014 Rmu_sc0003480.1_g000015 Rmu_sc0003541.1_g000016 Rmu_sc0003541.1_g000020 Rmu_sc0004035.1_g000001 Rmu_sc0004035.1_g000005 Rmu_sc0004035.1_g000011 Rmu_sc0004142.1_g000004 Rmu_sc0004142.1_g000010 Rmu_sc0004353.1_g000008 Rmu_sc0004616.1_g000009 Rmu_sc0004616.1_g000010 Rmu_sc0005231.1_g000004 Rmu_sc0006380.1_g000025 Rmu_sc0006492.1_g000010 Rmu_sc0006895.1_g000001 Rmu_sc0006895.1_g000002 Rmu_sc0006895.1_g000005 Rmu_sc0007034.1_g000004 Rmu_sc0007104.1_g000006 Rmu_sc0008990.1_g000003 Rmu_sc0008990.1_g000004 Rmu_sc0009106.1_g000003 Rmu_sc0009516.1_g000002 Rmu_sc0009516.1_g000003 Rmu_sc0009516.1_g000004 Rmu_sc0009516.1_g000005 Rmu_sc0009645.1_g000001 Rmu_sc0010274.1_g000001 Rmu_sc0010274.1_g000002 Rmu_sc0010419.1_g000003 Rmu_sc0010917.1_g000017 Rmu_sc0011213.1_g000001 Rmu_sc0011228.1_g000007 Rmu_sc0011538.1_g000011 Rmu_sc0011538.1_g000014 Rmu_sc0011538.1_g000015 Rmu_sc0012211.1_g000006 Rmu_sc0012351.1_g000003 Rmu_sc0012351.1_g000005 Rmu_sc0012915.1_g000002 Rmu_sc0013088.1_g000001 Rmu_sc0013459.1_g000001 Rmu_sc0013765.1_g000004 Rmu_sc0013765.1_g000005 Rmu_sc0014003.1_g000012 Rmu_sc0014003.1_g000014 Rmu_sc0014698.1_g000001 Rmu_sc0015740.1_g000001 Rmu_sc0016429.1_g000003 Rmu_sc0018885.1_g000001 Rmu_sc0020345.1_g000001 Rmu_sc0027791.1_g000001 Rmu_sc0037325.1_g000001 Rmu_ssc0000010.1_g000024 Rmu_ssc0000010.1_g000025 Rmu_ssc0000083.1_g000021 Rmu_ssc0000340.1_g000002 Rmu_ssc0000386.1_g000002 Rmu_ssc0000386.1_g000024 Rmu_ssc0000386.1_g000025 Rmu_ssc0000386.1_g000034 Rmu_ssc0000386.1_g000037 Rmu_ssc0000477.1_g000001
rosa_roxburghii Rroxscaffold_161G00448010 Rroxscaffold_164G00436080 Rroxscaffold_1G00024500 Rroxscaffold_2G00124290 Rroxscaffold_3G00222940 Rroxscaffold_3G00227440 Rroxscaffold_4G00304810 Rroxscaffold_4G00330180 Rroxscaffold_4G00330200 Rroxscaffold_5G00356620 Rroxscaffold_5G00358170 Rroxscaffold_5G00360880 Rroxscaffold_5G00361220 Rroxscaffold_5G00361950 Rroxscaffold_5G00361960 Rroxscaffold_5G00361990 Rroxscaffold_5G00362370 Rroxscaffold_5G00364540 Rroxscaffold_5G00364550 Rroxscaffold_5G00364580 Rroxscaffold_5G00364600 Rroxscaffold_6G00393290 Rroxscaffold_6G00412680 Rroxscaffold_6G00412790 Rroxscaffold_6G00413470 Rroxscaffold_6G00413720 Rroxscaffold_6G00416070 Rroxscaffold_7G00205400
rosa_rugosa Rorug01G0017300 Rorug01G0017400 Rorug01G0018000 Rorug01G0018100 Rorug01G0211500 Rorug02G0638200 Rorug03G0070000 Rorug03G0071200 Rorug03G0081000 Rorug03G0086500 Rorug03G0089300 Rorug03G0095300 Rorug03G0096000 Rorug03G0096000 Rorug04G0055000 Rorug04G0078300 Rorug04G0104100.1 Rorug04G0113800 Rorug04G0126700 Rorug04G0128000 Rorug04G0145900 Rorug04G0148700 Rorug04G0149100 Rorug04G0149100 Rorug04G0149200 Rorug04G0149300 Rorug04G0154900 Rorug04G0180400 Rorug04G0180500 Rorug04G0180700 Rorug04G0180800 Rorug04G0401500 Rorug04G0402100 Rorug05G0288600 Rorug05G0334100 Rorug07G0176400
rosa_samantha Rh1DG043200 Rh1DG043500 Rh1DG043900 Rh1DG222800 Rh3CG039900 Rh3CG156200 Rh3CG328500 Rh3CG328800 Rh3DG165000 Rh4AG208400 Rh4BG205600 Rh4BG213900 Rh4BG243900 Rh4CG198800 Rh4DG168600 Rh4DG180100 Rh4DG180300 Rh4DG180600 Rh4DG181200 Rh4DG181600 Rh4DG181700 Rh4DG183700 Rh4DG184000 Rh4DG184400 Rh4DG184700 Rh4DG206100 Rh4DG206200 Rh4DG206300 Rh4DG215600 Rh4DG238700 Rh4DG238900 Rh5DG390300
rosa_wichuraiana Rw0G005050 Rw0G009260 Rw0G009280 Rw0G015600 Rw0G023570 Rw1G002140 Rw1G002170 Rw1G002210 Rw1G002240 Rw1G019500 Rw2G015490 Rw3G003020 Rw3G010900 Rw3G012030 Rw3G012790 Rw3G013050 Rw3G013540 Rw3G013640 Rw3G013650 Rw3G026050 Rw3G026070 Rw4G015740 Rw4G015790 Rw4G015910 Rw4G015930 Rw4G015950 Rw4G017900 Rw4G017930 Rw4G018440 Rw4G018450 Rw4G018530 Rw4G020720 Rw4G020760 Rw5G019250 Rw5G034370 Rw7G018700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1467
AatII GACGTC 1 cut(s) 3683
Acc16I TGCGCA 1 cut(s) 2831
AccB1I GGYRCC 1 cut(s) 1952
AccBSI CCGCTC 3 cut(s) 62, 1545, 2509
AccI GTMKAC 2 cut(s) 3115, 3496
AccIII TCCGGA 1 cut(s) 2638
AciI CCGC 8 cut(s) 60, 1543, 2509, 2814, 3095, 3300, 3524, 3894
AclI AACGTT 1 cut(s) 877
AclWI GGATC 3 cut(s) 743, 2494, 3635
AcoI YGGCCR 2 cut(s) 594, 3638
AcsI RAATTY 5 cut(s) 8, 1262, 1612, 2136, 3666
AcuI CTGAAG 4 cut(s) 59, 1910, 2672, 3581
AcyI GRCGYC 1 cut(s) 3680
AfaI GTAC 7 cut(s) 412, 1116, 1177, 2103, 3244, 3346, 3548
AfiI CCNNNNNNNGG 9 cut(s) 870, 978, 2252, 2503, 2810, 3095, 3110, 3463, 3696
AflII CTTAAG 1 cut(s) 2302
AflIII ACRYGT 3 cut(s) 1810, 2275, 3491
AjnI CCWGG 1 cut(s) 2502
AloI GAACNNNNNNTCC 2 cut(s) 302, 334
Alw21I GWGCWC 2 cut(s) 28, 2533
AlwI GGATC 3 cut(s) 743, 2494, 3635
AlwNI CAGNNNCTG 1 cut(s) 2695
Aor13HI TCCGGA 1 cut(s) 2638
AoxI GGCC 7 cut(s) 594, 2254, 2738, 3097, 3638, 3895, 3905
ApeKI GCWGC 7 cut(s) 109, 764, 921, 1539, 2994, 3060, 3171
ApoI RAATTY 5 cut(s) 8, 1262, 1612, 2136, 3666
ArsI GACNNNNNNTTYG 2 cut(s) 3635, 3667
Asp700I GAANNNNTTC 3 cut(s) 1053, 2241, 3666
AspA2I CCTAGG 1 cut(s) 977
AspLEI GCGC 1 cut(s) 2832
AspS9I GGNCC 7 cut(s) 1910, 2254, 2494, 2738, 3097, 3560, 3896
AsuC2I CCSGG 2 cut(s) 3501, 3590
AsuHPI GGTGA 3 cut(s) 1361, 3526, 3820
AvaII GGWCC 3 cut(s) 1910, 2494, 3560
AvrII CCTAGG 1 cut(s) 977
AxyI CCTNAGG 1 cut(s) 3210
BaeGI GKGCMC 1 cut(s) 3209
BalI TGGCCA 1 cut(s) 596
BanI GGYRCC 1 cut(s) 1952
BbsI GAAGAC 2 cut(s) 1224, 1455
Bbv12I GWGCWC 2 cut(s) 28, 2533
BbvI GCAGC 7 cut(s) 96, 751, 933, 1551, 2981, 3047, 3158
BceAI ACGGC 3 cut(s) 281, 2475, 3313
BciT130I CCWGG 1 cut(s) 2504
BclI TGATCA 1 cut(s) 1797
BcnI CCSGG 2 cut(s) 3501, 3590
BfaI CTAG 8 cut(s) 77, 429, 896, 978, 1914, 2789, 3164, 3419
BfmI CTRYAG 2 cut(s) 765, 777
BfrI CTTAAG 1 cut(s) 2302
BglII AGATCT 1 cut(s) 1595
BlnI CCTAGG 1 cut(s) 977
BlpI GCTNAGC 2 cut(s) 219, 2060
BmcAI AGTACT 2 cut(s) 412, 3548
Bme1390I CCNGG 3 cut(s) 2504, 3501, 3590
Bme18I GGWCC 3 cut(s) 1910, 2494, 3560
BmgT120I GGNCC 7 cut(s) 1910, 2254, 2494, 2738, 3097, 3560, 3896
BmiI GGNNCC 1 cut(s) 1954
BmrFI CCNGG 3 cut(s) 2504, 3501, 3590
BmrI ACTGGG 4 cut(s) 202, 1937, 2261, 2529
BmuI ACTGGG 4 cut(s) 202, 1937, 2261, 2529
BoxI GACNNNNGTC 1 cut(s) 1522
BpiI GAAGAC 2 cut(s) 1224, 1455
BplI GAGNNNNNCTC 2 cut(s) 2515, 2547
BpmI CTGGAG 3 cut(s) 1994, 2525, 2767
Bpu10I CCTNAGC 1 cut(s) 2805
Bpu1102I GCTNAGC 2 cut(s) 219, 2060
BpuMI CCSGG 2 cut(s) 3501, 3590
BsaHI GRCGYC 1 cut(s) 3680
BsaI GGTCTC 2 cut(s) 962, 2822
BsaJI CCNNGG 5 cut(s) 457, 913, 977, 2662, 3109
BsaWI WCCGGW 3 cut(s) 1207, 1840, 2638
BsaXI ACNNNNNCTCC 2 cut(s) 168, 198
Bsc4I CCNNNNNNNGG 9 cut(s) 870, 978, 2252, 2503, 2810, 3095, 3110, 3463, 3696
Bse21I CCTNAGG 1 cut(s) 3210
Bse3DI GCAATG 3 cut(s) 1171, 2652, 3519
BseAI TCCGGA 1 cut(s) 2638
BseBI CCWGG 1 cut(s) 2504
BseDI CCNNGG 5 cut(s) 457, 913, 977, 2662, 3109
BseLI CCNNNNNNNGG 9 cut(s) 870, 978, 2252, 2503, 2810, 3095, 3110, 3463, 3696
BseMI GCAATG 3 cut(s) 1171, 2652, 3519
BseMII CTCAG 8 cut(s) 233, 1885, 2310, 2687, 2796, 2870, 2942, 3253
BseRI GAGGAG 1 cut(s) 2586
BseSI GKGCMC 1 cut(s) 3209
BseXI GCAGC 7 cut(s) 96, 751, 933, 1551, 2981, 3047, 3158
BsgI GTGCAG 5 cut(s) 326, 2875, 2947, 3013, 3157
BshFI GGCC 7 cut(s) 596, 2256, 2740, 3099, 3640, 3897, 3907
BshNI GGYRCC 1 cut(s) 1952
BsiHKAI GWGCWC 2 cut(s) 28, 2533
BsiSI CCGG 5 cut(s) 1208, 1841, 2639, 3501, 3590
BslFI GGGAC 6 cut(s) 533, 2303, 2602, 3091, 3120, 3846
BslI CCNNNNNNNGG 9 cut(s) 870, 978, 2252, 2503, 2810, 3095, 3110, 3463, 3696
BsmBI CGTCTC 3 cut(s) 1736, 3385, 3545
BsmFI GGGAC 6 cut(s) 533, 2303, 2602, 3091, 3120, 3846
BsmI GAATGC 2 cut(s) 2011, 2416
BsnI GGCC 7 cut(s) 596, 2256, 2740, 3099, 3640, 3897, 3907
Bso31I GGTCTC 2 cut(s) 962, 2822
Bsp1286I GDGCHC 3 cut(s) 28, 2533, 3209
Bsp13I TCCGGA 1 cut(s) 2638
Bsp1720I GCTNAGC 2 cut(s) 219, 2060
Bsp19I CCATGG 2 cut(s) 457, 2662
BspACI CCGC 8 cut(s) 60, 1543, 2509, 2814, 3095, 3300, 3524, 3894
BspANI GGCC 7 cut(s) 596, 2256, 2740, 3099, 3640, 3897, 3907
BspCNI CTCAG 8 cut(s) 232, 1884, 2311, 2688, 2797, 2869, 2941, 3252
BspEI TCCGGA 1 cut(s) 2638
BspHI TCATGA 1 cut(s) 649
BspLI GGNNCC 1 cut(s) 1954
BspMAI CTGCAG 1 cut(s) 769
BspPI GGATC 3 cut(s) 743, 2494, 3635
BspQI GCTCTTC 2 cut(s) 801, 3600
BspT107I GGYRCC 1 cut(s) 1952
BspTI CTTAAG 1 cut(s) 2302
BspTNI GGTCTC 2 cut(s) 962, 2822
BsrBI CCGCTC 3 cut(s) 62, 1545, 2509
BsrDI GCAATG 3 cut(s) 1171, 2652, 3519
BssECI CCNNGG 5 cut(s) 457, 913, 977, 2662, 3109
BssNI GRCGYC 1 cut(s) 3680
BssT1I CCWWGG 5 cut(s) 457, 913, 977, 2662, 3109
Bst2UI CCWGG 1 cut(s) 2504
Bst4CI ACNGT 8 cut(s) 964, 1119, 1281, 1295, 2636, 3196, 3427, 3886
Bst6I CTCTTC 9 cut(s) 801, 1764, 2691, 2904, 2976, 3042, 3288, 3600, 3762
BstACI GRCGYC 1 cut(s) 3680
BstAFI CTTAAG 1 cut(s) 2302
BstAPI GCANNNNNTGC 2 cut(s) 2006, 2232
BstC8I GCNNGC 4 cut(s) 225, 2190, 2194, 3097
BstDSI CCRYGG 2 cut(s) 457, 2662
BstENI CCTNNNNNAGG 1 cut(s) 2808
BstHHI GCGC 1 cut(s) 2832
BstNI CCWGG 1 cut(s) 2504
BstNSI RCATGY 7 cut(s) 1485, 1814, 1982, 2279, 2296, 3495, 3530
BstPAI GACNNNNGTC 1 cut(s) 1522
BstSCI CCNGG 3 cut(s) 2502, 3499, 3588
BstSFI CTRYAG 2 cut(s) 765, 777
BstSLI GKGCMC 1 cut(s) 3209
BstV1I GCAGC 7 cut(s) 96, 751, 933, 1551, 2981, 3047, 3158
BstV2I GAAGAC 2 cut(s) 1224, 1455
BstX2I RGATCY 3 cut(s) 735, 1595, 3627
BstYI RGATCY 3 cut(s) 735, 1595, 3627
Bsu36I CCTNAGG 1 cut(s) 3210
BsuRI GGCC 7 cut(s) 596, 2256, 2740, 3099, 3640, 3897, 3907
BtgI CCRYGG 2 cut(s) 457, 2662
BtsI GCAGTG 3 cut(s) 774, 2007, 3137
BtsIMutI CAGTG 6 cut(s) 190, 774, 1286, 2007, 3137, 3882
Cac8I GCNNGC 4 cut(s) 225, 2190, 2194, 3097
CaiI CAGNNNCTG 1 cut(s) 2695
CciI TCATGA 1 cut(s) 649
CfoI GCGC 1 cut(s) 2832
Cfr13I GGNCC 7 cut(s) 1910, 2254, 2494, 2738, 3097, 3560, 3896
Csp6I GTAC 7 cut(s) 411, 1115, 1176, 2102, 3243, 3345, 3547
CspCI CAANNNNNGTGG 6 cut(s) 945, 980, 1087, 1122, 1998, 2033
CviQI GTAC 7 cut(s) 411, 1115, 1176, 2102, 3243, 3345, 3547
DraI TTTAAA 2 cut(s) 1239, 1750
EaeI YGGCCR 2 cut(s) 594, 3638
Eam1104I CTCTTC 9 cut(s) 801, 1764, 2691, 2904, 2976, 3042, 3288, 3600, 3762
EarI CTCTTC 9 cut(s) 801, 1764, 2691, 2904, 2976, 3042, 3288, 3600, 3762
Eco130I CCWWGG 5 cut(s) 457, 913, 977, 2662, 3109
Eco31I GGTCTC 2 cut(s) 962, 2822
Eco47I GGWCC 3 cut(s) 1910, 2494, 3560
Eco57I CTGAAG 4 cut(s) 59, 1910, 2672, 3581
Eco81I CCTNAGG 1 cut(s) 3210
EcoNI CCTNNNNNAGG 1 cut(s) 2808
EcoO109I RGGNCCY 1 cut(s) 2494
EcoRII CCWGG 1 cut(s) 2502
EcoT14I CCWWGG 5 cut(s) 457, 913, 977, 2662, 3109
ErhI CCWWGG 5 cut(s) 457, 913, 977, 2662, 3109
Esp3I CGTCTC 3 cut(s) 1736, 3385, 3545
FalI AAGNNNNNCTT 6 cut(s) 1319, 1351, 1350, 1382, 2967, 2999
FaqI GGGAC 6 cut(s) 533, 2303, 2602, 3091, 3120, 3846
FauI CCCGC 2 cut(s) 3088, 3531
FbaI TGATCA 1 cut(s) 1797
FblI GTMKAC 2 cut(s) 3115, 3496
FspBI CTAG 8 cut(s) 77, 429, 896, 978, 1914, 2789, 3164, 3419
FspI TGCGCA 1 cut(s) 2831
GlaI GCGC 1 cut(s) 2831
GsuI CTGGAG 3 cut(s) 1994, 2525, 2767
HaeIII GGCC 7 cut(s) 596, 2256, 2740, 3099, 3640, 3897, 3907
HapII CCGG 5 cut(s) 1208, 1841, 2639, 3501, 3590
HhaI GCGC 1 cut(s) 2832
Hin1I GRCGYC 1 cut(s) 3680
Hin6I GCGC 1 cut(s) 2830
HinP1I GCGC 1 cut(s) 2830
HincII GTYRAC 4 cut(s) 1662, 2043, 2086, 3116
HindII GTYRAC 4 cut(s) 1662, 2043, 2086, 3116
HindIII AAGCTT 2 cut(s) 203, 2057
HpaI GTTAAC 1 cut(s) 2043
HpaII CCGG 5 cut(s) 1208, 1841, 2639, 3501, 3590
HphI GGTGA 3 cut(s) 1361, 3526, 3820
HpyCH4III ACNGT 8 cut(s) 964, 1119, 1281, 1295, 2636, 3196, 3427, 3886
HpyCH4IV ACGT 5 cut(s) 877, 1452, 1745, 2591, 3680
HpySE526I ACGT 5 cut(s) 877, 1452, 1745, 2591, 3680
Hsp92I GRCGYC 1 cut(s) 3680
HspAI GCGC 1 cut(s) 2830
Kpn2I TCCGGA 1 cut(s) 2638
Ksp22I TGATCA 1 cut(s) 1797
KspAI GTTAAC 1 cut(s) 2043
LguI GCTCTTC 2 cut(s) 801, 3600
LmnI GCTCC 8 cut(s) 1975, 2506, 2536, 2662, 2786, 2991, 3057, 3767
Lsp1109I GCAGC 7 cut(s) 96, 751, 933, 1551, 2981, 3047, 3158
MaeI CTAG 8 cut(s) 77, 429, 896, 978, 1914, 2789, 3164, 3419
MaeII ACGT 5 cut(s) 877, 1452, 1745, 2591, 3680
MaeIII GTNAC 6 cut(s) 931, 944, 2330, 2360, 3214, 3938
MbiI CCGCTC 3 cut(s) 62, 1545, 2509
MfeI CAATTG 5 cut(s) 1080, 1650, 2519, 3228, 3856
MflI RGATCY 3 cut(s) 735, 1595, 3627
MhlI GDGCHC 3 cut(s) 28, 2533, 3209
MlsI TGGCCA 1 cut(s) 596
MluNI TGGCCA 1 cut(s) 596
MlyI GAGTC 4 cut(s) 125, 1307, 2801, 3287
MmeI TCCRAC 2 cut(s) 1366, 2745
Mox20I TGGCCA 1 cut(s) 596
MroI TCCGGA 1 cut(s) 2638
MroXI GAANNNNTTC 3 cut(s) 1053, 2241, 3666
MscI TGGCCA 1 cut(s) 596
MslI CAYNNNNRTG 1 cut(s) 3933
Msp20I TGGCCA 1 cut(s) 596
MspA1I CMGCKG 1 cut(s) 3894
MspCI CTTAAG 1 cut(s) 2302
MspI CCGG 5 cut(s) 1208, 1841, 2639, 3501, 3590
MspR9I CCNGG 3 cut(s) 2504, 3501, 3590
MunI CAATTG 5 cut(s) 1080, 1650, 2519, 3228, 3856
Mva1269I GAATGC 2 cut(s) 2011, 2416
MvaI CCWGG 1 cut(s) 2504
NciI CCSGG 2 cut(s) 3501, 3590
NcoI CCATGG 2 cut(s) 457, 2662
NlaIV GGNNCC 1 cut(s) 1954
NmeAIII GCCGAG 2 cut(s) 1668, 2440
NmuCI GTSAC 3 cut(s) 931, 944, 2360
NsbI TGCGCA 1 cut(s) 2831
NspI RCATGY 7 cut(s) 1485, 1814, 1982, 2279, 2296, 3495, 3530
PagI TCATGA 1 cut(s) 649
PciI ACATGT 3 cut(s) 1810, 2275, 3491
PciSI GCTCTTC 2 cut(s) 801, 3600
PctI GAATGC 2 cut(s) 2011, 2416
PdmI GAANNNNTTC 3 cut(s) 1053, 2241, 3666
PflFI GACNNNGTC 1 cut(s) 1337
PfoI TCCNGGA 1 cut(s) 2502
PleI GAGTC 4 cut(s) 124, 1307, 2800, 3286
PpsI GAGTC 4 cut(s) 124, 1307, 2800, 3286
PpuMI RGGWCCY 1 cut(s) 2494
PscI ACATGT 3 cut(s) 1810, 2275, 3491
PshAI GACNNNNGTC 1 cut(s) 1522
PsiI TTATAA 1 cut(s) 1467
Psp1406I AACGTT 1 cut(s) 877
Psp5II RGGWCCY 1 cut(s) 2494
Psp6I CCWGG 1 cut(s) 2502
PspGI CCWGG 1 cut(s) 2502
PspN4I GGNNCC 1 cut(s) 1954
PspPI GGNCC 7 cut(s) 1910, 2254, 2494, 2738, 3097, 3560, 3896
PspPPI RGGWCCY 1 cut(s) 2494
PstI CTGCAG 1 cut(s) 769
PstNI CAGNNNCTG 1 cut(s) 2695
PsuI RGATCY 3 cut(s) 735, 1595, 3627
PsyI GACNNNGTC 1 cut(s) 1337
RsaI GTAC 7 cut(s) 412, 1116, 1177, 2103, 3244, 3346, 3548
RsaNI GTAC 7 cut(s) 411, 1115, 1176, 2102, 3243, 3345, 3547
RseI CAYNNNNRTG 1 cut(s) 3933
SalI GTCGAC 1 cut(s) 3114
SapI GCTCTTC 2 cut(s) 801, 3600
Sau96I GGNCC 7 cut(s) 1910, 2254, 2494, 2738, 3097, 3560, 3896
ScaI AGTACT 2 cut(s) 412, 3548
SchI GAGTC 4 cut(s) 125, 1307, 2801, 3287
ScrFI CCNGG 3 cut(s) 2504, 3501, 3590
SduI GDGCHC 3 cut(s) 28, 2533, 3209
SfcI CTRYAG 2 cut(s) 765, 777
SinI GGWCC 3 cut(s) 1910, 2494, 3560
SmiMI CAYNNNNRTG 1 cut(s) 3933
SsiI CCGC 8 cut(s) 60, 1543, 2509, 2814, 3095, 3300, 3524, 3894
SspI AATATT 2 cut(s) 796, 1415
SspMI CTAG 8 cut(s) 77, 429, 896, 978, 1914, 2789, 3164, 3419
StyD4I CCNGG 3 cut(s) 2502, 3499, 3588
StyI CCWWGG 5 cut(s) 457, 913, 977, 2662, 3109
TaaI ACNGT 8 cut(s) 964, 1119, 1281, 1295, 2636, 3196, 3427, 3886
TaiI ACGT 5 cut(s) 880, 1455, 1748, 2594, 3683
TaqI TCGA 7 cut(s) 72, 1047, 1232, 2049, 2564, 3040, 3115
TaqII GACCGA 1 cut(s) 3704
TatI WGTACW 6 cut(s) 410, 1175, 2101, 3242, 3344, 3546
TauI GCSGC 4 cut(s) 62, 1545, 3303, 3897
TscAI CASTG 6 cut(s) 197, 774, 1286, 2007, 3137, 3889
TseFI GTSAC 3 cut(s) 931, 944, 2360
TseI GCWGC 7 cut(s) 109, 764, 921, 1539, 2994, 3060, 3171
Tsp45I GTSAC 3 cut(s) 931, 944, 2360
TspGWI ACGGA 4 cut(s) 3305, 3446, 3552, 3796
TspRI CASTG 6 cut(s) 197, 774, 1286, 2007, 3137, 3889
Tth111I GACNNNGTC 1 cut(s) 1337
Vha464I CTTAAG 1 cut(s) 2302
VpaK11BI GGWCC 3 cut(s) 1910, 2494, 3560
XagI CCTNNNNNAGG 1 cut(s) 2808
XapI RAATTY 5 cut(s) 8, 1262, 1612, 2136, 3666
XbaI TCTAGA 2 cut(s) 2788, 3418
XceI RCATGY 7 cut(s) 1485, 1814, 1982, 2279, 2296, 3495, 3530
XcmI CCANNNNNNNNNTGG 2 cut(s) 604, 1384
XmaJI CCTAGG 1 cut(s) 977
XmiI GTMKAC 2 cut(s) 3115, 3496
XmnI GAANNNNTTC 3 cut(s) 1053, 2241, 3666
XspI CTAG 8 cut(s) 77, 429, 896, 978, 1914, 2789, 3164, 3419
ZraI GACGTC 1 cut(s) 3681
ZrmI AGTACT 2 cut(s) 412, 3548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.