Belongs to the disease resistance NB-LRR family
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Rx_N | PF18052 | 14 - 95 | 4.9e-09 | Rx N-terminal domain |
| NB-ARC | PF00931 | 182 - 359 | 2.4e-32 | NB-ARC domain |
| AAA_22 | PF13401 | 204 - 320 | 1.6e-07 | AAA domain |
| WHD_DRP | PF23559 | 446 - 526 | 5.3e-23 | Disease resistance protein Winged helix domain |
| LRR_14 | PF23598 | 572 - 953 | 5.8e-31 | Leucine-rich repeat region |
| LRR_R13L1-DRL21 | PF25019 | 722 - 844 | 8.7e-38 | R13L1/DRL21 LRRs |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 224, 237, 290 |
| AarI | CACCTGC | 1 cut(s) | 2505 |
| Acc36I | ACCTGC | 1 cut(s) | 2505 |
| AccI | GTMKAC | 1 cut(s) | 2314 |
| AccII | CGCG | 3 cut(s) | 785, 3458, 3470 |
| AciI | CCGC | 6 cut(s) | 103, 193, 1154, 2104, 2920, 3171 |
| AcoI | YGGCCR | 2 cut(s) | 615, 2491 |
| AcsI | RAATTY | 6 cut(s) | 509, 934, 1015, 2038, 2081, 2434 |
| AcuI | CTGAAG | 5 cut(s) | 198, 1080, 2691, 3248, 3389 |
| AfaI | GTAC | 4 cut(s) | 701, 725, 867, 2340 |
| AfeI | AGCGCT | 1 cut(s) | 2459 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 32, 182, 1415, 2489, 3154 |
| AflII | CTTAAG | 2 cut(s) | 1783, 2278 |
| AflIII | ACRYGT | 4 cut(s) | 1654, 1777, 2224, 2545 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1297 |
| AjnI | CCWGG | 2 cut(s) | 2808, 2841 |
| Alw21I | GWGCWC | 1 cut(s) | 2637 |
| Alw26I | GTCTC | 8 cut(s) | 73, 290, 359, 1466, 2432, 2771, 3192, 3293 |
| Ama87I | CYCGRG | 1 cut(s) | 3473 |
| Aor51HI | AGCGCT | 1 cut(s) | 2459 |
| AoxI | GGCC | 7 cut(s) | 201, 615, 634, 1735, 2197, 2491, 3497 |
| ApeKI | GCWGC | 5 cut(s) | 164, 416, 452, 455, 2460 |
| ApoI | RAATTY | 6 cut(s) | 509, 934, 1015, 2038, 2081, 2434 |
| AscI | GGCGCGCC | 1 cut(s) | 3468 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 600, 908, 1002, 1705 |
| AspA2I | CCTAGG | 3 cut(s) | 637, 2950, 3232 |
| AspLEI | GCGC | 6 cut(s) | 2460, 3458, 3460, 3470, 3472, 3481 |
| AspS9I | GGNCC | 5 cut(s) | 201, 1047, 1418, 1736, 2156 |
| AsuHPI | GGTGA | 6 cut(s) | 505, 622, 698, 955, 2081, 2156 |
| AsuNHI | GCTAGC | 1 cut(s) | 419 |
| AvaI | CYCGRG | 1 cut(s) | 3473 |
| AvaII | GGWCC | 3 cut(s) | 1047, 1418, 2156 |
| AvrII | CCTAGG | 3 cut(s) | 637, 2950, 3232 |
| AxyI | CCTNAGG | 1 cut(s) | 2051 |
| BalI | TGGCCA | 1 cut(s) | 617 |
| BanII | GRGCYC | 5 cut(s) | 2637, 2964, 3105, 3246, 3387 |
| BbsI | GAAGAC | 1 cut(s) | 1136 |
| Bbv12I | GWGCWC | 1 cut(s) | 2637 |
| BbvI | GCAGC | 5 cut(s) | 151, 428, 464, 467, 2447 |
| BciT130I | CCWGG | 2 cut(s) | 2810, 2843 |
| BciVI | GTATCC | 1 cut(s) | 1597 |
| BclI | TGATCA | 3 cut(s) | 70, 2043, 2824 |
| BcoDI | GTCTC | 8 cut(s) | 73, 290, 359, 1466, 2432, 2771, 3192, 3293 |
| BfmI | CTRYAG | 3 cut(s) | 1506, 2569, 2853 |
| BfoI | RGCGCY | 1 cut(s) | 2461 |
| BfrI | CTTAAG | 2 cut(s) | 1783, 2278 |
| BfuAI | ACCTGC | 1 cut(s) | 2505 |
| BfuI | GTATCC | 1 cut(s) | 1597 |
| BglII | AGATCT | 3 cut(s) | 1858, 1927, 2510 |
| BisI | GCNGC | 6 cut(s) | 165, 417, 453, 456, 1155, 2461 |
| BlnI | CCTAGG | 3 cut(s) | 637, 2950, 3232 |
| BlpI | GCTNAGC | 1 cut(s) | 1817 |
| BlsI | GCNGC | 6 cut(s) | 166, 418, 454, 457, 1156, 2462 |
| BmcAI | AGTACT | 1 cut(s) | 701 |
| Bme1390I | CCNGG | 2 cut(s) | 2810, 2843 |
| Bme18I | GGWCC | 3 cut(s) | 1047, 1418, 2156 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1297 |
| BmeT110I | CYCGRG | 1 cut(s) | 3473 |
| BmgT120I | GGNCC | 5 cut(s) | 201, 1047, 1418, 1736, 2156 |
| BmiI | GGNNCC | 3 cut(s) | 1420, 3104, 3386 |
| BmrFI | CCNGG | 2 cut(s) | 2810, 2843 |
| BmtI | GCTAGC | 1 cut(s) | 423 |
| BpiI | GAAGAC | 1 cut(s) | 1136 |
| BpmI | CTGGAG | 7 cut(s) | 54, 1502, 2825, 2831, 2894, 3035, 3355 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1817 |
| BpuEI | CTTGAG | 6 cut(s) | 341, 1377, 1936, 2537, 3361, 3447 |
| BsaAI | YACGTR | 2 cut(s) | 727, 1778 |
| BsaBI | GATNNNNATC | 2 cut(s) | 186, 2744 |
| BsaJI | CCNNGG | 7 cut(s) | 393, 637, 2003, 2657, 2950, 3232, 3474 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 27, 57, 1190, 1220, 2667, 2697 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 32, 182, 1415, 2489, 3154 |
| Bse1I | ACTGG | 2 cut(s) | 459, 1485 |
| Bse21I | CCTNAGG | 1 cut(s) | 2051 |
| Bse3DI | GCAATG | 3 cut(s) | 1122, 2123, 2860 |
| Bse8I | GATNNNNATC | 2 cut(s) | 186, 2744 |
| BseBI | CCWGG | 2 cut(s) | 2810, 2843 |
| BseDI | CCNNGG | 7 cut(s) | 393, 637, 2003, 2657, 2950, 3232, 3474 |
| BseJI | GATNNNNATC | 2 cut(s) | 186, 2744 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 32, 182, 1415, 2489, 3154 |
| BseMI | GCAATG | 3 cut(s) | 1122, 2123, 2860 |
| BseMII | CTCAG | 2 cut(s) | 1808, 2042 |
| BseNI | ACTGG | 2 cut(s) | 459, 1485 |
| BsePI | GCGCGC | 2 cut(s) | 3456, 3468 |
| BseRI | GAGGAG | 1 cut(s) | 51 |
| BseXI | GCAGC | 5 cut(s) | 151, 428, 464, 467, 2447 |
| BseYI | CCCAGC | 1 cut(s) | 2090 |
| BsgI | GTGCAG | 6 cut(s) | 471, 2285, 2815, 2956, 3238, 3379 |
| Bsh1236I | CGCG | 3 cut(s) | 785, 3458, 3470 |
| BshFI | GGCC | 7 cut(s) | 203, 617, 636, 1737, 2199, 2493, 3499 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2637 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3473 |
| BsiSI | CCGG | 1 cut(s) | 3496 |
| BslFI | GGGAC | 4 cut(s) | 441, 1133, 1404, 2465 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 32, 182, 1415, 2489, 3154 |
| BsmAI | GTCTC | 8 cut(s) | 73, 290, 359, 1466, 2432, 2771, 3192, 3293 |
| BsmBI | CGTCTC | 2 cut(s) | 359, 3192 |
| BsmFI | GGGAC | 4 cut(s) | 441, 1133, 1404, 2465 |
| BsmI | GAATGC | 1 cut(s) | 771 |
| BsnI | GGCC | 7 cut(s) | 203, 617, 636, 1737, 2199, 2493, 3499 |
| BsoBI | CYCGRG | 1 cut(s) | 3473 |
| Bsp1286I | GDGCHC | 5 cut(s) | 2637, 2964, 3105, 3246, 3387 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1817 |
| BspACI | CCGC | 6 cut(s) | 103, 193, 1154, 2104, 2920, 3171 |
| BspANI | GGCC | 7 cut(s) | 203, 617, 636, 1737, 2199, 2493, 3499 |
| BspCNI | CTCAG | 2 cut(s) | 1809, 2043 |
| BspFNI | CGCG | 3 cut(s) | 785, 3458, 3470 |
| BspHI | TCATGA | 1 cut(s) | 1621 |
| BspLI | GGNNCC | 3 cut(s) | 1420, 3104, 3386 |
| BspMI | ACCTGC | 1 cut(s) | 2505 |
| BspOI | GCTAGC | 1 cut(s) | 423 |
| BspTI | CTTAAG | 2 cut(s) | 1783, 2278 |
| BsrDI | GCAATG | 3 cut(s) | 1122, 2123, 2860 |
| BsrI | ACTGG | 2 cut(s) | 459, 1485 |
| BssECI | CCNNGG | 7 cut(s) | 393, 637, 2003, 2657, 2950, 3232, 3474 |
| BssHII | GCGCGC | 2 cut(s) | 3456, 3468 |
| BssT1I | CCWWGG | 4 cut(s) | 393, 637, 2950, 3232 |
| Bst2UI | CCWGG | 2 cut(s) | 2810, 2843 |
| Bst4CI | ACNGT | 6 cut(s) | 535, 1193, 1526, 1595, 2004, 3186 |
| Bst6I | CTCTTC | 8 cut(s) | 209, 2144, 2264, 2697, 2985, 3126, 3267, 3408 |
| BstAFI | CTTAAG | 2 cut(s) | 1783, 2278 |
| BstBAI | YACGTR | 2 cut(s) | 727, 1778 |
| BstDEI | CTNAG | 4 cut(s) | 1817, 2051, 2260, 2507 |
| BstDSI | CCRYGG | 1 cut(s) | 2003 |
| BstFNI | CGCG | 3 cut(s) | 785, 3458, 3470 |
| BstH2I | RGCGCY | 1 cut(s) | 2461 |
| BstHHI | GCGC | 6 cut(s) | 2460, 3458, 3460, 3470, 3472, 3481 |
| BstMAI | GTCTC | 8 cut(s) | 73, 290, 359, 1466, 2432, 2771, 3192, 3293 |
| BstNI | CCWGG | 2 cut(s) | 2810, 2843 |
| BstNSI | RCATGY | 4 cut(s) | 1658, 2228, 2766, 2902 |
| BstSCI | CCNGG | 2 cut(s) | 2808, 2841 |
| BstSFI | CTRYAG | 3 cut(s) | 1506, 2569, 2853 |
| BstSNI | TACGTA | 1 cut(s) | 727 |
| BstUI | CGCG | 3 cut(s) | 785, 3458, 3470 |
| BstV1I | GCAGC | 5 cut(s) | 151, 428, 464, 467, 2447 |
| BstV2I | GAAGAC | 1 cut(s) | 1136 |
| BstX2I | RGATCY | 8 cut(s) | 187, 400, 974, 1075, 1858, 1927, 2510, 2922 |
| BstYI | RGATCY | 8 cut(s) | 187, 400, 974, 1075, 1858, 1927, 2510, 2922 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2051 |
| BsuI | GTATCC | 1 cut(s) | 1597 |
| BsuRI | GGCC | 7 cut(s) | 203, 617, 636, 1737, 2199, 2493, 3499 |
| BtgI | CCRYGG | 1 cut(s) | 2003 |
| BtgZI | GCGATG | 1 cut(s) | 2743 |
| BtsI | GCAGTG | 1 cut(s) | 2827 |
| BtsIMutI | CAGTG | 3 cut(s) | 531, 1307, 2827 |
| BveI | ACCTGC | 1 cut(s) | 2505 |
| CciI | TCATGA | 1 cut(s) | 1621 |
| CfoI | GCGC | 6 cut(s) | 2460, 3458, 3460, 3470, 3472, 3481 |
| Cfr13I | GGNCC | 5 cut(s) | 201, 1047, 1418, 1736, 2156 |
| CseI | GACGC | 1 cut(s) | 791 |
| Csp6I | GTAC | 4 cut(s) | 700, 724, 866, 2339 |
| CviQI | GTAC | 4 cut(s) | 700, 724, 866, 2339 |
| DdeI | CTNAG | 4 cut(s) | 1817, 2051, 2260, 2507 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1297 |
| EaeI | YGGCCR | 2 cut(s) | 615, 2491 |
| Eam1104I | CTCTTC | 8 cut(s) | 209, 2144, 2264, 2697, 2985, 3126, 3267, 3408 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1297 |
| EarI | CTCTTC | 8 cut(s) | 209, 2144, 2264, 2697, 2985, 3126, 3267, 3408 |
| Ecl136II | GAGCTC | 1 cut(s) | 2635 |
| Eco105I | TACGTA | 1 cut(s) | 727 |
| Eco130I | CCWWGG | 4 cut(s) | 393, 637, 2950, 3232 |
| Eco147I | AGGCCT | 1 cut(s) | 636 |
| Eco24I | GRGCYC | 5 cut(s) | 2637, 2964, 3105, 3246, 3387 |
| Eco32I | GATATC | 2 cut(s) | 250, 2664 |
| Eco47I | GGWCC | 3 cut(s) | 1047, 1418, 2156 |
| Eco47III | AGCGCT | 1 cut(s) | 2459 |
| Eco53kI | GAGCTC | 1 cut(s) | 2635 |
| Eco57I | CTGAAG | 5 cut(s) | 198, 1080, 2691, 3248, 3389 |
| Eco81I | CCTNAGG | 1 cut(s) | 2051 |
| Eco88I | CYCGRG | 1 cut(s) | 3473 |
| EcoICRI | GAGCTC | 1 cut(s) | 2635 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2156 |
| EcoRI | GAATTC | 1 cut(s) | 509 |
| EcoRII | CCWGG | 2 cut(s) | 2808, 2841 |
| EcoRV | GATATC | 2 cut(s) | 250, 2664 |
| EcoT14I | CCWWGG | 4 cut(s) | 393, 637, 2950, 3232 |
| EcoT22I | ATGCAT | 1 cut(s) | 1557 |
| EcoT38I | GRGCYC | 5 cut(s) | 2637, 2964, 3105, 3246, 3387 |
| ErhI | CCWWGG | 4 cut(s) | 393, 637, 2950, 3232 |
| Esp3I | CGTCTC | 2 cut(s) | 359, 3192 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 217, 249, 2243, 2275, 2261, 2293 |
| FaqI | GGGAC | 4 cut(s) | 441, 1133, 1404, 2465 |
| FauI | CCCGC | 1 cut(s) | 186 |
| FbaI | TGATCA | 3 cut(s) | 70, 2043, 2824 |
| FblI | GTMKAC | 1 cut(s) | 2314 |
| Fnu4HI | GCNGC | 6 cut(s) | 165, 417, 453, 456, 1155, 2461 |
| FriOI | GRGCYC | 5 cut(s) | 2637, 2964, 3105, 3246, 3387 |
| Fsp4HI | GCNGC | 6 cut(s) | 165, 417, 453, 456, 1155, 2461 |
| GlaI | GCGC | 6 cut(s) | 2459, 3457, 3459, 3469, 3471, 3480 |
| GluI | GCNGC | 6 cut(s) | 165, 417, 453, 456, 1155, 2461 |
| GsaI | CCCAGC | 1 cut(s) | 2094 |
| GsuI | CTGGAG | 7 cut(s) | 54, 1502, 2825, 2831, 2894, 3035, 3355 |
| HaeII | RGCGCY | 1 cut(s) | 2461 |
| HaeIII | GGCC | 7 cut(s) | 203, 617, 636, 1737, 2199, 2493, 3499 |
| HapII | CCGG | 1 cut(s) | 3496 |
| HgaI | GACGC | 1 cut(s) | 791 |
| HhaI | GCGC | 6 cut(s) | 2460, 3458, 3460, 3470, 3472, 3481 |
| Hin6I | GCGC | 6 cut(s) | 2458, 3456, 3458, 3468, 3470, 3479 |
| HinP1I | GCGC | 6 cut(s) | 2458, 3456, 3458, 3468, 3470, 3479 |
| HincII | GTYRAC | 3 cut(s) | 1302, 2109, 2850 |
| HindII | GTYRAC | 3 cut(s) | 1302, 2109, 2850 |
| HindIII | AAGCTT | 2 cut(s) | 1171, 2374 |
| HpaI | GTTAAC | 1 cut(s) | 2109 |
| HpaII | CCGG | 1 cut(s) | 3496 |
| HphI | GGTGA | 6 cut(s) | 505, 622, 698, 955, 2081, 2156 |
| Hpy166II | GTNNAC | 5 cut(s) | 724, 1302, 2109, 2315, 2850 |
| Hpy8I | GTNNAC | 5 cut(s) | 724, 1302, 2109, 2315, 2850 |
| Hpy99I | CGWCG | 5 cut(s) | 765, 785, 790, 3534, 3537 |
| HpyAV | CCTTC | 8 cut(s) | 526, 534, 677, 1051, 1110, 1419, 1621, 2666 |
| HpyCH4III | ACNGT | 6 cut(s) | 535, 1193, 1526, 1595, 2004, 3186 |
| HpyCH4IV | ACGT | 4 cut(s) | 726, 760, 1777, 2545 |
| HpyF3I | CTNAG | 4 cut(s) | 1817, 2051, 2260, 2507 |
| HpySE526I | ACGT | 4 cut(s) | 726, 760, 1777, 2545 |
| HspAI | GCGC | 6 cut(s) | 2458, 3456, 3458, 3468, 3470, 3479 |
| Ksp22I | TGATCA | 3 cut(s) | 70, 2043, 2824 |
| KspAI | GTTAAC | 1 cut(s) | 2109 |
| LmnI | GCTCC | 6 cut(s) | 1090, 1337, 3108, 3336, 3390, 3415 |
| Lsp1109I | GCAGC | 5 cut(s) | 151, 428, 464, 467, 2447 |
| MaeII | ACGT | 4 cut(s) | 726, 760, 1777, 2545 |
| MaeIII | GTNAC | 6 cut(s) | 961, 1349, 2273, 2363, 2723, 3005 |
| MfeI | CAATTG | 5 cut(s) | 74, 674, 1356, 2189, 2467 |
| MflI | RGATCY | 8 cut(s) | 187, 400, 974, 1075, 1858, 1927, 2510, 2922 |
| MhlI | GDGCHC | 5 cut(s) | 2637, 2964, 3105, 3246, 3387 |
| MlsI | TGGCCA | 1 cut(s) | 617 |
| MluNI | TGGCCA | 1 cut(s) | 617 |
| MlyI | GAGTC | 7 cut(s) | 75, 423, 782, 1468, 2281, 2434, 2744 |
| MmeI | TCCRAC | 8 cut(s) | 517, 609, 1402, 1614, 2909, 3111, 3191, 3338 |
| Mox20I | TGGCCA | 1 cut(s) | 617 |
| Mph1103I | ATGCAT | 1 cut(s) | 1557 |
| MroXI | GAANNNNTTC | 4 cut(s) | 600, 908, 1002, 1705 |
| MscI | TGGCCA | 1 cut(s) | 617 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2296 |
| Msp20I | TGGCCA | 1 cut(s) | 617 |
| MspA1I | CMGCKG | 1 cut(s) | 2669 |
| MspCI | CTTAAG | 2 cut(s) | 1783, 2278 |
| MspI | CCGG | 1 cut(s) | 3496 |
| MspR9I | CCNGG | 2 cut(s) | 2810, 2843 |
| MunI | CAATTG | 5 cut(s) | 74, 674, 1356, 2189, 2467 |
| Mva1269I | GAATGC | 1 cut(s) | 771 |
| MvaI | CCWGG | 2 cut(s) | 2810, 2843 |
| MvnI | CGCG | 3 cut(s) | 785, 3458, 3470 |
| NheI | GCTAGC | 1 cut(s) | 419 |
| NlaIV | GGNNCC | 3 cut(s) | 1420, 3104, 3386 |
| NmeAIII | GCCGAG | 3 cut(s) | 229, 300, 2469 |
| NmuCI | GTSAC | 4 cut(s) | 961, 2273, 2723, 3005 |
| NsiI | ATGCAT | 1 cut(s) | 1557 |
| NspI | RCATGY | 4 cut(s) | 1658, 2228, 2766, 2902 |
| PaeI | GCATGC | 1 cut(s) | 2902 |
| PagI | TCATGA | 1 cut(s) | 1621 |
| PalAI | GGCGCGCC | 1 cut(s) | 3468 |
| PaqCI | CACCTGC | 1 cut(s) | 2505 |
| PauI | GCGCGC | 2 cut(s) | 3456, 3468 |
| PceI | AGGCCT | 1 cut(s) | 636 |
| PciI | ACATGT | 2 cut(s) | 1654, 2224 |
| PctI | GAATGC | 1 cut(s) | 771 |
| PdmI | GAANNNNTTC | 4 cut(s) | 600, 908, 1002, 1705 |
| PfeI | GAWTC | 7 cut(s) | 128, 1666, 1804, 2032, 2446, 2740, 3202 |
| PkrI | GCNGC | 6 cut(s) | 166, 418, 454, 457, 1156, 2462 |
| PleI | GAGTC | 7 cut(s) | 75, 423, 781, 1468, 2280, 2433, 2743 |
| PpsI | GAGTC | 7 cut(s) | 75, 423, 781, 1468, 2280, 2433, 2743 |
| Ppu21I | YACGTR | 2 cut(s) | 727, 1778 |
| PpuMI | RGGWCCY | 1 cut(s) | 2156 |
| PscI | ACATGT | 2 cut(s) | 1654, 2224 |
| PsiI | TTATAA | 3 cut(s) | 224, 237, 290 |
| Psp124BI | GAGCTC | 1 cut(s) | 2637 |
| Psp5II | RGGWCCY | 1 cut(s) | 2156 |
| Psp6I | CCWGG | 2 cut(s) | 2808, 2841 |
| PspFI | CCCAGC | 1 cut(s) | 2090 |
| PspGI | CCWGG | 2 cut(s) | 2808, 2841 |
| PspN4I | GGNNCC | 3 cut(s) | 1420, 3104, 3386 |
| PspPI | GGNCC | 5 cut(s) | 201, 1047, 1418, 1736, 2156 |
| PspPPI | RGGWCCY | 1 cut(s) | 2156 |
| PsuI | RGATCY | 8 cut(s) | 187, 400, 974, 1075, 1858, 1927, 2510, 2922 |
| PteI | GCGCGC | 2 cut(s) | 3456, 3468 |
| PvuII | CAGCTG | 1 cut(s) | 2669 |
| RsaI | GTAC | 4 cut(s) | 701, 725, 867, 2340 |
| RsaNI | GTAC | 4 cut(s) | 700, 724, 866, 2339 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2296 |
| SacI | GAGCTC | 1 cut(s) | 2637 |
| SatI | GCNGC | 6 cut(s) | 165, 417, 453, 456, 1155, 2461 |
| Sau96I | GGNCC | 5 cut(s) | 201, 1047, 1418, 1736, 2156 |
| ScaI | AGTACT | 1 cut(s) | 701 |
| SchI | GAGTC | 7 cut(s) | 75, 423, 782, 1468, 2281, 2434, 2744 |
| ScrFI | CCNGG | 2 cut(s) | 2810, 2843 |
| SduI | GDGCHC | 5 cut(s) | 2637, 2964, 3105, 3246, 3387 |
| SfcI | CTRYAG | 3 cut(s) | 1506, 2569, 2853 |
| SgsI | GGCGCGCC | 1 cut(s) | 3468 |
| SinI | GGWCC | 3 cut(s) | 1047, 1418, 2156 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2296 |
| SmlI | CTYRAG | 8 cut(s) | 356, 1392, 1783, 1915, 2278, 2516, 3340, 3462 |
| SmoI | CTYRAG | 8 cut(s) | 356, 1392, 1783, 1915, 2278, 2516, 3340, 3462 |
| SnaBI | TACGTA | 1 cut(s) | 727 |
| SphI | GCATGC | 1 cut(s) | 2902 |
| SseBI | AGGCCT | 1 cut(s) | 636 |
| SsiI | CCGC | 6 cut(s) | 103, 193, 1154, 2104, 2920, 3171 |
| SspI | AATATT | 1 cut(s) | 601 |
| SstI | GAGCTC | 1 cut(s) | 2637 |
| StuI | AGGCCT | 1 cut(s) | 636 |
| StyD4I | CCNGG | 2 cut(s) | 2808, 2841 |
| StyI | CCWWGG | 4 cut(s) | 393, 637, 2950, 3232 |
| TaaI | ACNGT | 6 cut(s) | 535, 1193, 1526, 1595, 2004, 3186 |
| TaiI | ACGT | 4 cut(s) | 729, 763, 1780, 2548 |
| TaqI | TCGA | 8 cut(s) | 84, 306, 763, 1651, 2013, 2449, 2700, 2738 |
| TatI | WGTACW | 3 cut(s) | 699, 865, 2338 |
| TauI | GCSGC | 1 cut(s) | 1157 |
| TfiI | GAWTC | 7 cut(s) | 128, 1666, 1804, 2032, 2446, 2740, 3202 |
| TscAI | CASTG | 3 cut(s) | 538, 1314, 2834 |
| TseFI | GTSAC | 4 cut(s) | 961, 2273, 2723, 3005 |
| TseI | GCWGC | 5 cut(s) | 164, 416, 452, 455, 2460 |
| Tsp45I | GTSAC | 4 cut(s) | 961, 2273, 2723, 3005 |
| TspGWI | ACGGA | 3 cut(s) | 2348, 2400, 2759 |
| TspRI | CASTG | 3 cut(s) | 538, 1314, 2834 |
| Vha464I | CTTAAG | 2 cut(s) | 1783, 2278 |
| VpaK11BI | GGWCC | 3 cut(s) | 1047, 1418, 2156 |
| XapI | RAATTY | 6 cut(s) | 509, 934, 1015, 2038, 2081, 2434 |
| XbaI | TCTAGA | 2 cut(s) | 1216, 1924 |
| XceI | RCATGY | 4 cut(s) | 1658, 2228, 2766, 2902 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 625, 1412 |
| XmaJI | CCTAGG | 3 cut(s) | 637, 2950, 3232 |
| XmiI | GTMKAC | 1 cut(s) | 2314 |
| XmnI | GAANNNNTTC | 4 cut(s) | 600, 908, 1002, 1705 |
| ZrmI | AGTACT | 1 cut(s) | 701 |
| Zsp2I | ATGCAT | 1 cut(s) | 1557 |