Rw5G034370

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000029
Physical Location & Seq
Reverse (-)
59233895 .. 59248427
14533 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G034370.1

Sequence Viewer

Length: 3804 bp
ATGGCTGAGCTTCTCACTTTTGCTGCCCAGGAAATACTTACAAAAGTGGCTTCACTTGCTGCTCAAGAGTTCAATCTTGTTTGGGGACTCAAAGGAGAATTAACAAAGTTACGTGAATCATCACTCTTGCTTGAAGCTGTGCTACAAGATGCCCAACATCCACATCAAGATCAGGGAGAGGCTGTGAAGCTCTGGGTGAAGAAGCTTGAAGACGTAGCTCATGATGCCGATGAGGTGTTGGATGACTACGGCTATGAACTTCTCCGGCGTAAAGTGGAACTGCGCAACCAGATAAAGAAAAAGGTGCAATGTTTCTTTTCCCTTTCCAATCCCATTGTATTTCGTGTAAAAATGGCACATAAAGTTAATAAGATCAACACATCTTTGGAGAAGTTGAATAATATGGCAAGTGCTATTGGGTTAAGTGCTAGGCCATCCATAGATGCAATAAGCTCCAATGGTCAAAGAATTGACCGGGAAACATACTCTCATTTTGAGCAAGATGAAAACAATATCATCGGAAGGAAAGAGGTTGTGTCAGATATAGTGAAAGTCTTGACAGCCTCAAACAACAATAATCTTTCTGTTATGGCCATCGTAGGAATGGCAGGGATTGGAAAGACAACTTTGGCTAAATGTGTGTATGATGATGATAAGATAAACAAACACTTCCATGAGAAAATTTGGGTTTGCGTATCTACTCATTTTGAAGTTAGTTCGGTTTTGAGGAGGATCTTGGAATCTCTTAAACCAGAAAACGCTGCAGTACAATCAATAGATGCAATGTGTAGAATTCTGAAAGAAATGTTGAAAGACAAGAGATATCTTCTCGTGCTCGATGATGTTTGGAATGAAGATTCTCAAAAATGGAATCATTTGGTGAGTTGTTTGTTAAGAGTTACTAACACCCGTGGAACCCACATCATTGTTACAACCCGCAGTGACAAAGTTGCCAATTTGGTGGAGACACTTCCGAGGAATGATTTGAAAAAGCTATCGGATGATGAATGTTGGCTCATATTGAAAGACAAAGCAGTTCCAGTTGAAAGTCAACCTCTGCCTCAAGATCAAGAGAGAATCGGAAGGGAGATTGCCAAAAAATGTGGAGGTGTACCATTAGCGGCAAAGGTTCTGGGACATATGATGCGCTCTAAAAGGAATGATGGATGGCAATCAATTCTACAAAATGGAATATGGGACGTACCAGAAGAAGAAGAAAGAATCTTGTCGATTTTGAAGTTGAGTTTTGATGAATTGAAATCTCCATCATTGAAACAATGTTTTGCATATTGCTCAATGTTCATCAAAGATTTTGAAATGGAAAAGGATGACTTGATTCAACTTTGGATGGCTCAAGGATGGCTTCACCACTCTCCCATCACAAGTAATCTAGAGATGGAGGATATAGGTAATGAATATTTTAACATTTTATTAGAAAATTCCTTTTTTCAAGATGTTACAAAGGATTCCCACAACAATATTACCAAATGCAAGATGCACGATCTTGTACATAATCTTGCAAAACATGTATCAAACTCGAAGAACCGGCACTCACTATTTTCGAAGGCAGACATTGACAAGTTGCCAGACTCACTTGGAAAGTTGAAACACTTGAGGTATCTGAATGTCATGAAAACAAGAGTCAAAAGATTTCCCAAATCTATCGGTCAACTTTACTACCTACAGACATTAAAAATGCCTTATCACTTTGATGAGTTTCCGAGGGAAATTGCAAATTTGGTCAACTTACGACATGTTTATTATGGAAAGTACGTGGAGGTTCCTGTTGGGATATTGGGAAGATTAACCAATCTCCGATCATTACCTTCTATAAAGGTTGGTAAGGAGAAGGGTCCTAGGATTGAGGAATTGGGTGGTCTAATCCAACTGCAACACGGCTTGTGTATTTATGGTTTGGAAAATGTAAGAGATGGAGAAGAAGCAAAGAAAGCAAAGTTGGTTGAGAAGAAACATTTACGCAAGTTAACTCTTGACTGGAAACTTAGTAGACCTAGCAACAATGTTGACAATGAGGATGATGTACTAGAAGGCCTCCAACCACATTCTAGTCTGGAAATTTTGAAGATTGGAGGGTTCATGGGTGTTACACTTCCATCATGGTTATCGCTAGCCAGCCATTTGATAGAGATTGAATTGTGCGAATGCAACAATTGCGAAGGAGTACCAGCACTTGGCCATCTGCCCAATCTTAGACATCTTAAGATCAAGAGCATGCAGAACCTCAAATGTTTGGGATCTCATTTCTATGGTTATGATCACGTTTCCGATGCAGTAGCTGGAACAAGTAAGGAGACACGAGCTTTGTTTCCTGCATTGAAAACATTACATATTGAGGAGGCCACACACCTGATGGAATGGATGGAAGCGCCAACCGGAAGAGTAAGTGGGGTGTTTCCTTGCCTTGAGGAGCTGACTCTAGAGAACTGTAGGGATTTGAGAAGTGCTCCAAGTCATTTTCCCACTCTGAAGAGGTTGGTGATAAGGGACATGGGTAGTGGCATGCCAGTAGTAAGCATTCTGAGCACAAAACTGACCACTTTGACTTATCTCAGATTAAGTGATATCCAAGGACTTACTTGTCTGCCGGAAGGGATATTGGAAAACAACAAGAATCTCGCTAAGTTGAGGTTAGATCTTTGCTATCACTTAACTGATATCACTCCCCAAGGGTCAGAGTACTGCTGCTCATCTCTTCAGTCAGTGCATATTAGCAGGTGTCAGAATTTGAGGTATTTACCTGACGGCCTGCTCACACCCTCTCTTAAAAAGTTGCGTTTGTTTGATTGTCGTAGTCTAGAGTTCATCCCAGATAGTACACGCGGTCTCATAGCTCTTGAAGCATTGACATTAATTGGATGCTCCAAAATAAAGTCTATTCCAACTACACAAGGCCTCACATCCCTCCAGCAATTAGAAGTTGTATATTGTCCCGAGTTATCAAGCCTACCGAGTGGACTGGAATCCTGCACCTCTCTTCAGAGTTTGACAATAACAAGCTGCCCAAAGGTAACATCCATTTCAATCGAAAGTCTCAGTACAGCCCTCCAAGAGTTGACTATAGATGACTTACAGTTTCTTCCAGCATTACAAGGCTTCACATCCCTCCGTGAATTGACGATCGAAGGATGTAATGGTCGACAGTTTGGGCAGGAATTTAGTGCCTCTCTTCAAACTCTCGTCTCTCTGAACATAATTTTTTGCTTTGAACTAGAGAGTATTCCTAGTTTAGACAAGCTCACATCCCTTCGCACGTTGGTGATTACTAATTGTTCTCGATTAACAAGTCTACCGAATGGATTAGCAGCATCCTCAGTCTGCAGCCTCACCAGTTTGAAGGAATTGAAAATTGGTTTCTTCTGGGGAAAGCTCGAGTCATTCCCTGCTTTTCAGGTTATACCGCAACTTGAACAATTAGCAATCTATGGATGGCCTATGCTCAATTCTCTCCCTGAAAACATTCAACACTTCACTTCTTTGACCATTTTGGAGATACATTTTTTTGTGGGAGTGGTGGCTCTCCCAGAGTGGCTGGGTAACCTTGCATCTCTTCAGTTTCTAGTGATTGCGCATTGCGAGAATATGAAGTACCTACCCTCTGTCGAAGCCATGCAGCACCTCACCAAATTACAAGCCCTAGAGATCTTTCGGTGTCCTCTTCTAAGGGAAAGATGCACCGAGGAGAGTGGCCCAGAGTGGCCTAAGATTCGTCATATTCCAGAAATACATGTCTACAATCAATTTTACACCAAATGGTTACCACTCGATGAGTTAAAGGCACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 ko04014 map03460 map04014
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

1267

Amino Acids

143.24

Weight (kDa)

6.67

Isoelectric Point (pI)

47.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 10 - 97 2.2e-19 Rx N-terminal domain
nSTAND1 PF20703 166 - 384 2.6e-06 Novel STAND NTPase 1
AAA_16 PF13191 172 - 309 6.6e-07 AAA ATPase domain
NB-ARC PF00931 177 - 348 1.1e-35 NB-ARC domain
NACHT PF05729 196 - 333 4e-08 NACHT domain
WHD_DRP PF23559 433 - 507 7.5e-23 Disease resistance protein Winged helix domain
LRR_14 PF23598 531 - 814 4e-28 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 621 - 745 2.7e-37 R13L1/DRL21 LRRs
LRR_14 PF23598 944 - 1119 1.3e-07 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 1031 - 1097 2.1e-09 R13L1/DRL21 LRRs
LRR_14 PF23598 1039 - 1172 1.4e-06 Leucine-rich repeat region
LRR_14 PF23598 1142 - 1252 8.5e-07 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000029)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13530 FvH4_4g18270 FvH4_6g12200 FvH4_6g12460 FvH4_6g12461 FvH4_6g13450 FvH4_6g15090 FvH4_6g15220 FvH4_6g15230 FvH4_6g15250 FvH4_6g15251 FvH4_6g15340 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47980 FvH4_6g47980 FvH4_6g47980 FvH4_6g48170 FvH4_6g48310 FvH4_6g48310 FvH4_6g48850 FvH4_6g48881 FvH4_7g11830
malus_domestica MD02G1059900.v1.1 MD02G1069600.v1.1 MD02G1069700.v1.1 MD02G1070100.v1.1 MD02G1070200.v1.1 MD02G1070300.v1.1 MD02G1070800.v1.1 MD02G1070900.v1.1 MD02G1071200.v1.1 MD02G1071400.v1.1 MD02G1071900.v1.1 MD02G1075200.v1.1 MD03G1048000.v1.1 MD03G1049100.v1.1 MD03G1049200.v1.1 MD03G1052500.v1.1 MD03G1054100.v1.1 MD03G1054300.v1.1 MD03G1054400.v1.1 MD04G1113400.v1.1 MD04G1211100.v1.1 MD04G1211200.v1.1 MD05G1174900.v1.1 MD05G1175000.v1.1 MD05G1175900.v1.1 MD05G1243400.v1.1 MD07G1031500.v1.1 MD07G1031600.v1.1 MD07G1032500.v1.1 MD11G1046800.v1.1 MD11G1046900.v1.1 MD11G1047000.v1.1 MD11G1050400.v1.1 MD11G1050600.v1.1 MD11G1050800.v1.1 MD11G1051100.v1.1 MD11G1051600.v1.1 MD11G1051700.v1.1 MD11G1054600.v1.1 MD11G1055600.v1.1 MD11G1055700.v1.1 MD11G1055800.v1.1 MD11G1056000.v1.1 MD12G1126600.v1.1 MD12G1126700.v1.1 MD12G1126800.v1.1 MD12G1127300.v1.1 MD12G1127600.v1.1 MD12G1127900.v1.1 MD12G1128100.v1.1 MD12G1128300.v1.1 MD15G1261500.v1.1
prunus_persica Prupe.1G010700_v2.0.a1 Prupe.1G010800_v2.0.a1 Prupe.1G011000_v2.0.a1 Prupe.1G159600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163700_v2.0.a1 Prupe.1G163700_v2.0.a1 Prupe.1G163800_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G235500_v2.0.a1 Prupe.2G067400_v2.0.a1 Prupe.2G067500_v2.0.a1 Prupe.2G111700_v2.0.a1 Prupe.2G111800_v2.0.a1 Prupe.3G012000_v2.0.a1 Prupe.6G243400_v2.0.a1 Prupe.6G243500_v2.0.a1 Prupe.6G243600_v2.0.a1 Prupe.6G243700_v2.0.a1 Prupe.6G243800_v2.0.a1 Prupe.6G243900_v2.0.a1
pyrus_communis pycom02g04860 pycom02g04880 pycom02g04890 pycom02g05510 pycom02g05520 pycom02g05600 pycom02g05930 pycom02g06000 pycom02g06010 pycom03g03800 pycom03g03860 pycom03g03880 pycom03g03890 pycom03g03910 pycom03g03920 pycom03g04200 pycom03g04290 pycom03g04300 pycom03g04310 pycom03g04320 pycom03g09260 pycom04g10150 pycom04g10160 pycom04g10170 pycom05g16180 pycom05g16190 pycom05g16240 pycom05g21980 pycom05g21990 pycom07g02280 pycom11g03800 pycom11g03810 pycom11g04080 pycom11g04140 pycom11g04150 pycom11g04160 pycom11g04570 pycom11g04580 pycom11g04590 pycom11g04610 pycom12g12470 pycom12g12490 pycom13g22050
rosa_chinensis RchiOBHm_Chr1g0317761 RchiOBHm_Chr1g0317821 RchiOBHm_Chr1g0317831 RchiOBHm_Chr1g0317871 RchiOBHm_Chr1g0350501 RchiOBHm_Chr2g0107631 RchiOBHm_Chr3g0452091 RchiOBHm_Chr3g0464001 RchiOBHm_Chr3g0464281 RchiOBHm_Chr3g0466331 RchiOBHm_Chr3g0467341 RchiOBHm_Chr3g0467381 RchiOBHm_Chr3g0467731 RchiOBHm_Chr3g0468291 RchiOBHm_Chr3g0468321 RchiOBHm_Chr3g0468341 RchiOBHm_Chr3g0468391 RchiOBHm_Chr3g0468411 RchiOBHm_Chr3g0468571 RchiOBHm_Chr3g0468591 RchiOBHm_Chr3g0490721 RchiOBHm_Chr3g0490751 RchiOBHm_Chr3g0490761 RchiOBHm_Chr3g0490771 RchiOBHm_Chr3g0490951 RchiOBHm_Chr3g0491001 RchiOBHm_Chr3g0491011 RchiOBHm_Chr4g0412461 RchiOBHm_Chr4g0414161 RchiOBHm_Chr4g0414181 RchiOBHm_Chr4g0414191 RchiOBHm_Chr4g0414281 RchiOBHm_Chr4g0414441 RchiOBHm_Chr4g0414521 RchiOBHm_Chr4g0414531 RchiOBHm_Chr4g0417011 RchiOBHm_Chr4g0417021 RchiOBHm_Chr4g0417041 RchiOBHm_Chr4g0417071 RchiOBHm_Chr4g0417101 RchiOBHm_Chr4g0417531 RchiOBHm_Chr4g0417641 RchiOBHm_Chr4g0417651 RchiOBHm_Chr4g0417701 RchiOBHm_Chr4g0417731 RchiOBHm_Chr4g0417741 RchiOBHm_Chr4g0417781 RchiOBHm_Chr4g0418751 RchiOBHm_Chr4g0418791 RchiOBHm_Chr4g0418861 RchiOBHm_Chr4g0418881 RchiOBHm_Chr4g0418901 RchiOBHm_Chr4g0422451 RchiOBHm_Chr4g0422461 RchiOBHm_Chr4g0422471 RchiOBHm_Chr4g0422541 RchiOBHm_Chr4g0422561 RchiOBHm_Chr4g0422591 RchiOBHm_Chr4g0422651 RchiOBHm_Chr4g0422661 RchiOBHm_Chr5g0003251 RchiOBHm_Chr5g0003261 RchiOBHm_Chr5g0055871 RchiOBHm_Chr7g0204701 RchiOBHm_Chr7g0204741
rosa_laevigata RLG00000007607 RLG00000007932 RLG00000017606 RLG00000024418 RLG00000025629 RLG00000030586
rosa_multiflora Rmu_co7959167.1_g000001 Rmu_co8021330.1_g000001 Rmu_co8132128.1_g000001 Rmu_co8224744.1_g000001 Rmu_co8281865.1_g000001 Rmu_co8298487.1_g000001 Rmu_co8319035.1_g000001 Rmu_co8380035.1_g000001 Rmu_co8385371.1_g000001 Rmu_co8398173.1_g000001 Rmu_co8423363.1_g000001 Rmu_co8438275.1_g000001 Rmu_co8474729.1_g000001 Rmu_sc0000057.1_g000008 Rmu_sc0000350.1_g000023 Rmu_sc0000480.1_g000005 Rmu_sc0000654.1_g000021 Rmu_sc0000654.1_g000029 Rmu_sc0000654.1_g000032 Rmu_sc0000654.1_g000041 Rmu_sc0000654.1_g000045 Rmu_sc0000772.1_g000002 Rmu_sc0000772.1_g000041 Rmu_sc0000808.1_g000040 Rmu_sc0000830.1_g000062 Rmu_sc0000830.1_g000065 Rmu_sc0000830.1_g000072 Rmu_sc0000830.1_g000073 Rmu_sc0000935.1_g000020 Rmu_sc0000935.1_g000024 Rmu_sc0000935.1_g000026 Rmu_sc0000935.1_g000027 Rmu_sc0000935.1_g000031 Rmu_sc0000935.1_g000033 Rmu_sc0000962.1_g000033 Rmu_sc0000962.1_g000036 Rmu_sc0000962.1_g000063 Rmu_sc0000962.1_g000064 Rmu_sc0000962.1_g000065 Rmu_sc0001029.1_g000007 Rmu_sc0001063.1_g000014 Rmu_sc0001149.1_g000010 Rmu_sc0001149.1_g000011 Rmu_sc0001358.1_g000009 Rmu_sc0001448.1_g000003 Rmu_sc0001448.1_g000004 Rmu_sc0001729.1_g000005 Rmu_sc0001729.1_g000007 Rmu_sc0001729.1_g000020 Rmu_sc0001729.1_g000023 Rmu_sc0001793.1_g000015 Rmu_sc0002494.1_g000018 Rmu_sc0002494.1_g000019 Rmu_sc0002604.1_g000022 Rmu_sc0002922.1_g000011 Rmu_sc0003008.1_g000009 Rmu_sc0003221.1_g000061 Rmu_sc0003221.1_g000062 Rmu_sc0003459.1_g000014 Rmu_sc0003480.1_g000015 Rmu_sc0003541.1_g000016 Rmu_sc0003541.1_g000020 Rmu_sc0004035.1_g000001 Rmu_sc0004035.1_g000005 Rmu_sc0004035.1_g000011 Rmu_sc0004142.1_g000004 Rmu_sc0004142.1_g000010 Rmu_sc0004353.1_g000008 Rmu_sc0004616.1_g000009 Rmu_sc0004616.1_g000010 Rmu_sc0005231.1_g000004 Rmu_sc0006380.1_g000025 Rmu_sc0006492.1_g000010 Rmu_sc0006895.1_g000001 Rmu_sc0006895.1_g000002 Rmu_sc0006895.1_g000005 Rmu_sc0007034.1_g000004 Rmu_sc0007104.1_g000006 Rmu_sc0008990.1_g000003 Rmu_sc0008990.1_g000004 Rmu_sc0009106.1_g000003 Rmu_sc0009516.1_g000002 Rmu_sc0009516.1_g000003 Rmu_sc0009516.1_g000004 Rmu_sc0009516.1_g000005 Rmu_sc0009645.1_g000001 Rmu_sc0010274.1_g000001 Rmu_sc0010274.1_g000002 Rmu_sc0010419.1_g000003 Rmu_sc0010917.1_g000017 Rmu_sc0011213.1_g000001 Rmu_sc0011228.1_g000007 Rmu_sc0011538.1_g000011 Rmu_sc0011538.1_g000014 Rmu_sc0011538.1_g000015 Rmu_sc0012211.1_g000006 Rmu_sc0012351.1_g000003 Rmu_sc0012351.1_g000005 Rmu_sc0012915.1_g000002 Rmu_sc0013088.1_g000001 Rmu_sc0013459.1_g000001 Rmu_sc0013765.1_g000004 Rmu_sc0013765.1_g000005 Rmu_sc0014003.1_g000012 Rmu_sc0014003.1_g000014 Rmu_sc0014698.1_g000001 Rmu_sc0015740.1_g000001 Rmu_sc0016429.1_g000003 Rmu_sc0018885.1_g000001 Rmu_sc0020345.1_g000001 Rmu_sc0027791.1_g000001 Rmu_sc0037325.1_g000001 Rmu_ssc0000010.1_g000024 Rmu_ssc0000010.1_g000025 Rmu_ssc0000083.1_g000021 Rmu_ssc0000340.1_g000002 Rmu_ssc0000386.1_g000002 Rmu_ssc0000386.1_g000024 Rmu_ssc0000386.1_g000025 Rmu_ssc0000386.1_g000034 Rmu_ssc0000386.1_g000037 Rmu_ssc0000477.1_g000001
rosa_roxburghii Rroxscaffold_161G00448010 Rroxscaffold_164G00436080 Rroxscaffold_1G00024500 Rroxscaffold_2G00124290 Rroxscaffold_3G00222940 Rroxscaffold_3G00227440 Rroxscaffold_4G00304810 Rroxscaffold_4G00330180 Rroxscaffold_4G00330200 Rroxscaffold_5G00356620 Rroxscaffold_5G00358170 Rroxscaffold_5G00360880 Rroxscaffold_5G00361220 Rroxscaffold_5G00361950 Rroxscaffold_5G00361960 Rroxscaffold_5G00361990 Rroxscaffold_5G00362370 Rroxscaffold_5G00364540 Rroxscaffold_5G00364550 Rroxscaffold_5G00364580 Rroxscaffold_5G00364600 Rroxscaffold_6G00393290 Rroxscaffold_6G00412680 Rroxscaffold_6G00412790 Rroxscaffold_6G00413470 Rroxscaffold_6G00413720 Rroxscaffold_6G00416070 Rroxscaffold_7G00205400
rosa_rugosa Rorug01G0017300 Rorug01G0017400 Rorug01G0018000 Rorug01G0018100 Rorug01G0211500 Rorug02G0638200 Rorug03G0070000 Rorug03G0071200 Rorug03G0081000 Rorug03G0086500 Rorug03G0089300 Rorug03G0095300 Rorug03G0096000 Rorug03G0096000 Rorug04G0055000 Rorug04G0078300 Rorug04G0104100.1 Rorug04G0113800 Rorug04G0126700 Rorug04G0128000 Rorug04G0145900 Rorug04G0148700 Rorug04G0149100 Rorug04G0149100 Rorug04G0149200 Rorug04G0149300 Rorug04G0154900 Rorug04G0180400 Rorug04G0180500 Rorug04G0180700 Rorug04G0180800 Rorug04G0401500 Rorug04G0402100 Rorug05G0288600 Rorug05G0334100 Rorug07G0176400
rosa_samantha Rh1DG043200 Rh1DG043500 Rh1DG043900 Rh1DG222800 Rh3CG039900 Rh3CG156200 Rh3CG328500 Rh3CG328800 Rh3DG165000 Rh4AG208400 Rh4BG205600 Rh4BG213900 Rh4BG243900 Rh4CG198800 Rh4DG168600 Rh4DG180100 Rh4DG180300 Rh4DG180600 Rh4DG181200 Rh4DG181600 Rh4DG181700 Rh4DG183700 Rh4DG184000 Rh4DG184400 Rh4DG184700 Rh4DG206100 Rh4DG206200 Rh4DG206300 Rh4DG215600 Rh4DG238700 Rh4DG238900 Rh5DG390300
rosa_wichuraiana Rw0G005050 Rw0G009260 Rw0G009280 Rw0G015600 Rw0G023570 Rw1G002140 Rw1G002170 Rw1G002210 Rw1G002240 Rw1G019500 Rw2G015490 Rw3G003020 Rw3G010900 Rw3G012030 Rw3G012790 Rw3G013050 Rw3G013540 Rw3G013640 Rw3G013650 Rw3G026050 Rw3G026070 Rw4G015740 Rw4G015790 Rw4G015910 Rw4G015930 Rw4G015950 Rw4G017900 Rw4G017930 Rw4G018440 Rw4G018450 Rw4G018530 Rw4G020720 Rw4G020760 Rw5G019250 Rw5G034370 Rw7G018700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2724
AasI GACNNNNNNGTC 1 cut(s) 2598
Acc16I TGCGCA 2 cut(s) 284, 3588
Acc36I ACCTGC 1 cut(s) 2724
AccB7I CCANNNNNTGG 1 cut(s) 2192
AccI GTMKAC 4 cut(s) 2008, 3157, 3307, 3750
AccII CGCG 1 cut(s) 2841
AciI CCGC 4 cut(s) 937, 1121, 2841, 3419
AclWI GGATC 2 cut(s) 740, 2263
AcoI YGGCCR 2 cut(s) 591, 2194
AcsI RAATTY 7 cut(s) 681, 792, 1438, 1735, 2076, 2743, 3173
AcuI CTGAAG 4 cut(s) 2507, 2699, 2981, 3554
AfiI CCNNNNNNNGG 1 cut(s) 2192
AflII CTTAAG 1 cut(s) 2219
AflIII ACRYGT 3 cut(s) 1525, 1753, 3745
AjnI CCWGG 1 cut(s) 27
AjuI GAANNNNNNNTTGG 4 cut(s) 1940, 1972, 3351, 3383
AleI CACNNNNGTG 1 cut(s) 3275
Alw21I GWGCWC 3 cut(s) 837, 2467, 2546
Alw26I GTCTC 5 cut(s) 959, 2306, 2849, 3056, 3205
AlwI GGATC 2 cut(s) 740, 2263
AlwNI CAGNNNCTG 1 cut(s) 2297
Ama87I CYCGRG 2 cut(s) 2951, 3389
ApeKI GCWGC 8 cut(s) 23, 59, 761, 2703, 3018, 3323, 3339, 3631
ApoI RAATTY 7 cut(s) 681, 792, 1438, 1735, 2076, 2743, 3173
ArsI GACNNNNNNTTYG 2 cut(s) 2305, 2337
AseI ATTAAT 1 cut(s) 2870
Asp700I GAANNNNTTC 1 cut(s) 3477
AspA2I CCTAGG 1 cut(s) 1856
AspLEI GCGC 4 cut(s) 285, 1149, 2389, 3589
AspS9I GGNCC 2 cut(s) 1853, 3707
AsuC2I CCSGG 1 cut(s) 476
AsuHPI GGTGA 7 cut(s) 208, 892, 1358, 2509, 3289, 3337, 3631
AsuII TTCGAA 1 cut(s) 1562
AsuNHI GCTAGC 1 cut(s) 2128
AvaI CYCGRG 2 cut(s) 2951, 3389
AvaII GGWCC 1 cut(s) 1853
AvrII CCTAGG 1 cut(s) 1856
BalI TGGCCA 2 cut(s) 593, 2196
BarI GAAGNNNNNNTAC 2 cut(s) 126, 158
BauI CACGAG 2 cut(s) 830, 2316
BbsI GAAGAC 1 cut(s) 216
Bbv12I GWGCWC 3 cut(s) 837, 2467, 2546
BbvI GCAGC 8 cut(s) 10, 46, 748, 2690, 3005, 3335, 3351, 3643
BceAI ACGGC 3 cut(s) 265, 1912, 2779
BciT130I CCWGG 1 cut(s) 29
BclI TGATCA 1 cut(s) 2275
BcnI CCSGG 1 cut(s) 476
BcoDI GTCTC 5 cut(s) 959, 2306, 2849, 3056, 3205
BfmI CTRYAG 5 cut(s) 762, 1682, 2446, 3078, 3337
BfoI RGCGCY 1 cut(s) 2390
BfrI CTTAAG 1 cut(s) 2219
BfuAI ACCTGC 1 cut(s) 2724
BglII AGATCT 2 cut(s) 2653, 3660
BisI GCNGC 9 cut(s) 24, 60, 762, 1122, 2704, 3019, 3324, 3340, 3632
BlnI CCTAGG 1 cut(s) 1856
BlpI GCTNAGC 1 cut(s) 6
BlsI GCNGC 9 cut(s) 25, 61, 763, 1123, 2705, 3020, 3325, 3341, 3633
BmcAI AGTACT 1 cut(s) 2699
Bme1390I CCNGG 2 cut(s) 29, 476
Bme18I GGWCC 1 cut(s) 1853
BmeT110I CYCGRG 2 cut(s) 2951, 3389
BmgT120I GGNCC 2 cut(s) 1853, 3707
BmiI GGNNCC 3 cut(s) 916, 1782, 1854
BmrFI CCNGG 2 cut(s) 29, 476
BmtI GCTAGC 1 cut(s) 2132
BpiI GAAGAC 1 cut(s) 216
BplI GAGNNNNNCTC 2 cut(s) 2449, 2481
BpmI CTGGAG 1 cut(s) 2909
Bpu1102I GCTNAGC 1 cut(s) 6
Bpu14I TTCGAA 1 cut(s) 1562
BpuEI CTTGAG 5 cut(s) 48, 1047, 1338, 1633, 2444
BpuMI CCSGG 1 cut(s) 476
BsaAI YACGTR 2 cut(s) 113, 1774
BsaBI GATNNNNATC 1 cut(s) 1171
BsaI GGTCTC 1 cut(s) 2849
BsaJI CCNNGG 8 cut(s) 27, 910, 974, 1721, 1856, 2587, 2686, 3696
BsaWI WCCGGW 1 cut(s) 2393
BsaXI ACNNNNNCTCC 2 cut(s) 168, 198
Bsc4I CCNNNNNNNGG 1 cut(s) 2192
Bse118I RCCGGY 1 cut(s) 1545
Bse1I ACTGG 5 cut(s) 1040, 2000, 2525, 2982, 3348
Bse3DI GCAATG 3 cut(s) 314, 789, 3589
Bse8I GATNNNNATC 1 cut(s) 1171
BseBI CCWGG 1 cut(s) 29
BseDI CCNNGG 8 cut(s) 27, 910, 974, 1721, 1856, 2587, 2686, 3696
BseJI GATNNNNATC 1 cut(s) 1171
BseLI CCNNNNNNNGG 1 cut(s) 2192
BseMI GCAATG 3 cut(s) 314, 789, 3589
BseMII CTCAG 4 cut(s) 2531, 2584, 3067, 3345
BseNI ACTGG 5 cut(s) 1040, 2000, 2525, 2982, 3348
BseRI GAGGAG 4 cut(s) 742, 2369, 2441, 3713
BseXI GCAGC 8 cut(s) 10, 46, 748, 2690, 3005, 3335, 3351, 3643
BseYI CCCAGC 1 cut(s) 3550
BsgI GTGCAG 1 cut(s) 2971
Bsh1236I CGCG 1 cut(s) 2841
Bsh1285I CGRYCG 1 cut(s) 3141
BsiEI CGRYCG 1 cut(s) 3141
BsiHKAI GWGCWC 3 cut(s) 837, 2467, 2546
BsiHKCI CYCGRG 2 cut(s) 2951, 3389
BsiSI CCGG 5 cut(s) 265, 475, 1546, 2394, 2606
BslFI GGGAC 5 cut(s) 99, 1149, 1211, 2519, 2934
BslI CCNNNNNNNGG 1 cut(s) 2192
BsmAI GTCTC 5 cut(s) 959, 2306, 2849, 3056, 3205
BsmBI CGTCTC 1 cut(s) 3205
BsmFI GGGAC 5 cut(s) 99, 1149, 1211, 2519, 2934
BsmI GAATGC 2 cut(s) 2168, 2535
Bso31I GGTCTC 1 cut(s) 2849
BsoBI CYCGRG 2 cut(s) 2951, 3389
Bsp119I TTCGAA 1 cut(s) 1562
Bsp1286I GDGCHC 3 cut(s) 837, 2467, 2546
Bsp1407I TGTACA 1 cut(s) 1507
Bsp1720I GCTNAGC 1 cut(s) 6
BspACI CCGC 4 cut(s) 937, 1121, 2841, 3419
BspCNI CTCAG 4 cut(s) 2532, 2583, 3066, 3344
BspFNI CGCG 1 cut(s) 2841
BspHI TCATGA 2 cut(s) 220, 1629
BspLI GGNNCC 3 cut(s) 916, 1782, 1854
BspMAI CTGCAG 2 cut(s) 766, 3341
BspMI ACCTGC 1 cut(s) 2724
BspOI GCTAGC 1 cut(s) 2132
BspPI GGATC 2 cut(s) 740, 2263
BspT104I TTCGAA 1 cut(s) 1562
BspTI CTTAAG 1 cut(s) 2219
BspTNI GGTCTC 1 cut(s) 2849
BsrDI GCAATG 3 cut(s) 314, 789, 3589
BsrFI RCCGGY 1 cut(s) 1545
BsrGI TGTACA 1 cut(s) 1507
BsrI ACTGG 5 cut(s) 1040, 2000, 2525, 2982, 3348
BssAI RCCGGY 1 cut(s) 1545
BssECI CCNNGG 8 cut(s) 27, 910, 974, 1721, 1856, 2587, 2686, 3696
BssSI CACGAG 2 cut(s) 830, 2316
BssT1I CCWWGG 3 cut(s) 1856, 2587, 2686
Bst2BI CACGAG 2 cut(s) 830, 2316
Bst2UI CCWGG 1 cut(s) 29
Bst4CI ACNGT 3 cut(s) 2447, 3093, 3162
Bst6I CTCTTC 7 cut(s) 2392, 2483, 2718, 3000, 3192, 3573, 3681
BstAFI CTTAAG 1 cut(s) 2219
BstAPI GCANNNNNTGC 1 cut(s) 2172
BstAUI TGTACA 1 cut(s) 1507
BstBAI YACGTR 2 cut(s) 113, 1774
BstBI TTCGAA 1 cut(s) 1562
BstC8I GCNNGC 5 cut(s) 2130, 2134, 2234, 2522, 2768
BstDSI CCRYGG 1 cut(s) 910
BstEII GGTNACC 2 cut(s) 3554, 3774
BstFNI CGCG 1 cut(s) 2841
BstH2I RGCGCY 1 cut(s) 2390
BstHHI GCGC 4 cut(s) 285, 1149, 2389, 3589
BstMAI GTCTC 5 cut(s) 959, 2306, 2849, 3056, 3205
BstMCI CGRYCG 1 cut(s) 3141
BstMWI GCNNNNNNNGC 6 cut(s) 56, 224, 1949, 2172, 2541, 2858
BstNI CCWGG 1 cut(s) 29
BstNSI RCATGY 5 cut(s) 1529, 1757, 2236, 2524, 3749
BstPI GGTNACC 2 cut(s) 3554, 3774
BstSCI CCNGG 2 cut(s) 27, 474
BstSFI CTRYAG 5 cut(s) 762, 1682, 2446, 3078, 3337
BstUI CGCG 1 cut(s) 2841
BstV1I GCAGC 8 cut(s) 10, 46, 748, 2690, 3005, 3335, 3351, 3643
BstV2I GAAGAC 1 cut(s) 216
BstX2I RGATCY 4 cut(s) 732, 2255, 2653, 3660
BstXI CCANNNNNNTGG 1 cut(s) 961
BstYI RGATCY 4 cut(s) 732, 2255, 2653, 3660
BtgI CCRYGG 1 cut(s) 910
BtsI GCAGTG 1 cut(s) 946
BtsIMutI CAGTG 2 cut(s) 946, 2727
BveI ACCTGC 1 cut(s) 2724
Cac8I GCNNGC 5 cut(s) 2130, 2134, 2234, 2522, 2768
CaiI CAGNNNCTG 1 cut(s) 2297
CciI TCATGA 2 cut(s) 220, 1629
CfoI GCGC 4 cut(s) 285, 1149, 2389, 3589
Cfr10I RCCGGY 1 cut(s) 1545
Cfr13I GGNCC 2 cut(s) 1853, 3707
CspCI CAANNNNNGTGG 2 cut(s) 1084, 1119
DrdI GACNNNNNNGTC 1 cut(s) 2598
DseDI GACNNNNNNGTC 1 cut(s) 2598
EaeI YGGCCR 2 cut(s) 591, 2194
Eam1104I CTCTTC 7 cut(s) 2392, 2483, 2718, 3000, 3192, 3573, 3681
EarI CTCTTC 7 cut(s) 2392, 2483, 2718, 3000, 3192, 3573, 3681
Eco130I CCWWGG 3 cut(s) 1856, 2587, 2686
Eco147I AGGCCT 2 cut(s) 2052, 2913
Eco31I GGTCTC 1 cut(s) 2849
Eco32I GATATC 3 cut(s) 824, 2584, 2677
Eco47I GGWCC 1 cut(s) 1853
Eco57I CTGAAG 4 cut(s) 2507, 2699, 2981, 3554
Eco88I CYCGRG 2 cut(s) 2951, 3389
Eco91I GGTNACC 2 cut(s) 3554, 3774
EcoO109I RGGNCCY 1 cut(s) 1853
EcoO65I GGTNACC 2 cut(s) 3554, 3774
EcoRI GAATTC 1 cut(s) 792
EcoRII CCWGG 1 cut(s) 27
EcoRV GATATC 3 cut(s) 824, 2584, 2677
EcoT14I CCWWGG 3 cut(s) 1856, 2587, 2686
ErhI CCWWGG 3 cut(s) 1856, 2587, 2686
Esp3I CGTCTC 1 cut(s) 3205
FalI AAGNNNNNCTT 4 cut(s) 1316, 1348, 1347, 1379
FaqI GGGAC 5 cut(s) 99, 1149, 1211, 2519, 2934
FauI CCCGC 1 cut(s) 944
FauNDI CATATG 1 cut(s) 1140
FbaI TGATCA 1 cut(s) 2275
FblI GTMKAC 4 cut(s) 2008, 3157, 3307, 3750
Fnu4HI GCNGC 9 cut(s) 24, 60, 762, 1122, 2704, 3019, 3324, 3340, 3632
Fsp4HI GCNGC 9 cut(s) 24, 60, 762, 1122, 2704, 3019, 3324, 3340, 3632
FspI TGCGCA 2 cut(s) 284, 3588
GlaI GCGC 4 cut(s) 284, 1148, 2388, 3588
GluI GCNGC 9 cut(s) 24, 60, 762, 1122, 2704, 3019, 3324, 3340, 3632
GsaI CCCAGC 1 cut(s) 3554
GsuI CTGGAG 1 cut(s) 2909
HaeII RGCGCY 1 cut(s) 2390
HapII CCGG 5 cut(s) 265, 475, 1546, 2394, 2606
HhaI GCGC 4 cut(s) 285, 1149, 2389, 3589
Hin6I GCGC 4 cut(s) 283, 1147, 2387, 3587
HinP1I GCGC 4 cut(s) 283, 1147, 2387, 3587
HincII GTYRAC 7 cut(s) 1052, 1670, 1744, 1986, 2026, 3075, 3158
HindII GTYRAC 7 cut(s) 1052, 1670, 1744, 1986, 2026, 3075, 3158
HindIII AAGCTT 1 cut(s) 203
HpaI GTTAAC 1 cut(s) 1986
HpaII CCGG 5 cut(s) 265, 475, 1546, 2394, 2606
HphI GGTGA 7 cut(s) 208, 892, 1358, 2509, 3289, 3337, 3631
HpyCH4III ACNGT 3 cut(s) 2447, 3093, 3162
HpyCH4IV ACGT 6 cut(s) 112, 213, 1200, 1773, 2280, 3272
HpyF10VI GCNNNNNNNGC 6 cut(s) 56, 224, 1949, 2172, 2541, 2858
HpySE526I ACGT 6 cut(s) 112, 213, 1200, 1773, 2280, 3272
HspAI GCGC 4 cut(s) 283, 1147, 2387, 3587
Ksp22I TGATCA 1 cut(s) 2275
KspAI GTTAAC 1 cut(s) 1986
LmnI GCTCC 4 cut(s) 458, 2428, 2470, 2885
Lsp1109I GCAGC 8 cut(s) 10, 46, 748, 2690, 3005, 3335, 3351, 3643
MaeII ACGT 6 cut(s) 112, 213, 1200, 1773, 2280, 3272
MaeIII GTNAC 9 cut(s) 108, 898, 928, 941, 1456, 2104, 3028, 3554, 3774
MfeI CAATTG 1 cut(s) 2170
MflI RGATCY 4 cut(s) 732, 2255, 2653, 3660
MhlI GDGCHC 3 cut(s) 837, 2467, 2546
MlsI TGGCCA 2 cut(s) 593, 2196
MluNI TGGCCA 2 cut(s) 593, 2196
MlyI GAGTC 5 cut(s) 81, 1583, 1650, 2428, 3401
MmeI TCCRAC 4 cut(s) 219, 1909, 2080, 2924
Mox20I TGGCCA 2 cut(s) 593, 2196
MroXI GAANNNNTTC 1 cut(s) 3477
MscI TGGCCA 2 cut(s) 593, 2196
MslI CAYNNNNRTG 4 cut(s) 672, 1710, 2265, 3275
Msp20I TGGCCA 2 cut(s) 593, 2196
MspCI CTTAAG 1 cut(s) 2219
MspI CCGG 5 cut(s) 265, 475, 1546, 2394, 2606
MspR9I CCNGG 2 cut(s) 29, 476
MunI CAATTG 1 cut(s) 2170
Mva1269I GAATGC 2 cut(s) 2168, 2535
MvaI CCWGG 1 cut(s) 29
MvnI CGCG 1 cut(s) 2841
MwoI GCNNNNNNNGC 6 cut(s) 56, 224, 1949, 2172, 2541, 2858
NciI CCSGG 1 cut(s) 476
NdeI CATATG 1 cut(s) 1140
NheI GCTAGC 1 cut(s) 2128
NlaIV GGNNCC 3 cut(s) 916, 1782, 1854
NmuCI GTSAC 1 cut(s) 941
NsbI TGCGCA 2 cut(s) 284, 3588
NspI RCATGY 5 cut(s) 1529, 1757, 2236, 2524, 3749
NspV TTCGAA 1 cut(s) 1562
OliI CACNNNNGTG 1 cut(s) 3275
PaeI GCATGC 2 cut(s) 2236, 2524
PaeR7I CTCGAG 1 cut(s) 3389
PagI TCATGA 2 cut(s) 220, 1629
PaqCI CACCTGC 1 cut(s) 2724
PceI AGGCCT 2 cut(s) 2052, 2913
PciI ACATGT 3 cut(s) 1525, 1753, 3745
PctI GAATGC 2 cut(s) 2168, 2535
PdmI GAANNNNTTC 1 cut(s) 3477
PflMI CCANNNNNTGG 1 cut(s) 2192
PkrI GCNGC 9 cut(s) 25, 61, 763, 1123, 2705, 3020, 3325, 3341, 3633
Ple19I CGATCG 1 cut(s) 3141
PleI GAGTC 5 cut(s) 81, 1583, 1649, 2428, 3400
PpsI GAGTC 5 cut(s) 81, 1583, 1649, 2428, 3400
Ppu21I YACGTR 2 cut(s) 113, 1774
PpuMI RGGWCCY 1 cut(s) 1853
PscI ACATGT 3 cut(s) 1525, 1753, 3745
PshBI ATTAAT 1 cut(s) 2870
Psp5II RGGWCCY 1 cut(s) 1853
Psp6I CCWGG 1 cut(s) 27
PspEI GGTNACC 2 cut(s) 3554, 3774
PspFI CCCAGC 1 cut(s) 3550
PspGI CCWGG 1 cut(s) 27
PspN4I GGNNCC 3 cut(s) 916, 1782, 1854
PspPI GGNCC 2 cut(s) 1853, 3707
PspPPI RGGWCCY 1 cut(s) 1853
PspXI VCTCGAGB 1 cut(s) 3389
PstI CTGCAG 2 cut(s) 766, 3341
PstNI CAGNNNCTG 1 cut(s) 2297
PsuI RGATCY 4 cut(s) 732, 2255, 2653, 3660
PvuI CGATCG 1 cut(s) 3141
RseI CAYNNNNRTG 4 cut(s) 672, 1710, 2265, 3275
SalI GTCGAC 1 cut(s) 3156
SatI GCNGC 9 cut(s) 24, 60, 762, 1122, 2704, 3019, 3324, 3340, 3632
Sau96I GGNCC 2 cut(s) 1853, 3707
ScaI AGTACT 1 cut(s) 2699
SchI GAGTC 5 cut(s) 81, 1583, 1650, 2428, 3401
ScrFI CCNGG 2 cut(s) 29, 476
SduI GDGCHC 3 cut(s) 837, 2467, 2546
SfcI CTRYAG 5 cut(s) 762, 1682, 2446, 3078, 3337
Sfr274I CTCGAG 1 cut(s) 3389
SfuI TTCGAA 1 cut(s) 1562
SinI GGWCC 1 cut(s) 1853
SlaI CTCGAG 1 cut(s) 3389
SmiMI CAYNNNNRTG 4 cut(s) 672, 1710, 2265, 3275
SmlI CTYRAG 7 cut(s) 63, 1062, 1353, 1612, 2219, 2423, 3389
SmoI CTYRAG 7 cut(s) 63, 1062, 1353, 1612, 2219, 2423, 3389
SphI GCATGC 2 cut(s) 2236, 2524
SseBI AGGCCT 2 cut(s) 2052, 2913
SsiI CCGC 4 cut(s) 937, 1121, 2841, 3419
SspI AATATT 2 cut(s) 1418, 1480
StuI AGGCCT 2 cut(s) 2052, 2913
StyD4I CCNGG 2 cut(s) 27, 474
StyI CCWWGG 3 cut(s) 1856, 2587, 2686
TaaI ACNGT 3 cut(s) 2447, 3093, 3162
TaiI ACGT 6 cut(s) 115, 216, 1203, 1776, 2283, 3275
TaqII GACCGA 1 cut(s) 1655
TatI WGTACW 6 cut(s) 766, 1507, 2041, 2697, 2834, 3056
TauI GCSGC 1 cut(s) 1124
TscAI CASTG 2 cut(s) 946, 2727
TseFI GTSAC 1 cut(s) 941
TseI GCWGC 8 cut(s) 23, 59, 761, 2703, 3018, 3323, 3339, 3631
Tsp45I GTSAC 1 cut(s) 941
TspGWI ACGGA 1 cut(s) 3116
TspRI CASTG 2 cut(s) 946, 2727
Van91I CCANNNNNTGG 1 cut(s) 2192
Vha464I CTTAAG 1 cut(s) 2219
VpaK11BI GGWCC 1 cut(s) 1853
VspI ATTAAT 1 cut(s) 2870
XapI RAATTY 7 cut(s) 681, 792, 1438, 1735, 2076, 2743, 3173
XbaI TCTAGA 3 cut(s) 1390, 2437, 2815
XceI RCATGY 5 cut(s) 1529, 1757, 2236, 2524, 3749
XcmI CCANNNNNNNNNTGG 2 cut(s) 601, 2368
XhoI CTCGAG 1 cut(s) 3389
XmaJI CCTAGG 1 cut(s) 1856
XmiI GTMKAC 4 cut(s) 2008, 3157, 3307, 3750
XmnI GAANNNNTTC 1 cut(s) 3477
ZrmI AGTACT 1 cut(s) 2699
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.