disease resistance
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Rx_N | PF18052 | 11 - 97 | 1e-21 | Rx N-terminal domain |
| NB-ARC | PF00931 | 177 - 348 | 4.9e-35 | NB-ARC domain |
| WHD_DRP | PF23559 | 433 - 507 | 8.4e-22 | Disease resistance protein Winged helix domain |
| LRR_14 | PF23598 | 532 - 798 | 1.1e-26 | Leucine-rich repeat region |
| LRR_R13L1-DRL21 | PF25019 | 642 - 766 | 1.3e-34 | R13L1/DRL21 LRRs |
| LRR_14 | PF23598 | 1026 - 1234 | 1e-10 | Leucine-rich repeat region |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1974 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 3523 |
| AatII | GACGTC | 1 cut(s) | 3521 |
| Acc16I | TGCGCA | 1 cut(s) | 2042 |
| AccB1I | GGYRCC | 2 cut(s) | 2775, 3039 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1577, 2255 |
| AccBSI | CCGCTC | 3 cut(s) | 2481, 2745, 3732 |
| AccI | GTMKAC | 3 cut(s) | 2986, 3094, 3334 |
| AccIII | TCCGGA | 2 cut(s) | 2875, 3177 |
| AciI | CCGC | 9 cut(s) | 152, 2230, 2481, 2556, 2743, 2827, 2972, 3138, 3732 |
| AclI | AACGTT | 1 cut(s) | 2343 |
| AclWI | GGATC | 3 cut(s) | 749, 1267, 1330 |
| AcoI | YGGCCR | 2 cut(s) | 600, 2072 |
| AcuI | CTGAAG | 5 cut(s) | 59, 1614, 1730, 2738, 3209 |
| AcyI | GRCGYC | 1 cut(s) | 3518 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 984, 1577, 2255, 2804, 3074, 3301, 3534, 3709 |
| AflIII | ACRYGT | 5 cut(s) | 1525, 1984, 2035, 2278, 3364 |
| AhlI | ACTAGT | 1 cut(s) | 1120 |
| AjiI | CACGTC | 1 cut(s) | 2522 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 179, 211 |
| Alw21I | GWGCWC | 7 cut(s) | 28, 768, 846, 1057, 2055, 2506, 2931 |
| Alw26I | GTCTC | 9 cut(s) | 324, 756, 968, 1904, 2538, 3223, 3383, 3495, 3671 |
| AlwI | GGATC | 3 cut(s) | 749, 1267, 1330 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2305, 2761 |
| Aor13HI | TCCGGA | 2 cut(s) | 2875, 3177 |
| AoxI | GGCC | 7 cut(s) | 600, 2072, 3076, 3476, 3561, 3733, 3743 |
| ApeKI | GCWGC | 8 cut(s) | 59, 109, 770, 927, 2998, 3147, 3150, 3660 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 3038, 3070, 3087, 3119 |
| AseI | ATTAAT | 1 cut(s) | 2151 |
| AspA2I | CCTAGG | 1 cut(s) | 983 |
| AspLEI | GCGC | 3 cut(s) | 1551, 2043, 3660 |
| AspS9I | GGNCC | 3 cut(s) | 1568, 3398, 3734 |
| AsuHPI | GGTGA | 4 cut(s) | 2548, 2638, 3364, 3658 |
| AsuII | TTCGAA | 1 cut(s) | 717 |
| AvaII | GGWCC | 2 cut(s) | 1568, 3398 |
| AvrII | CCTAGG | 1 cut(s) | 983 |
| AxyI | CCTNAGG | 2 cut(s) | 2306, 2991 |
| BaeGI | GKGCMC | 2 cut(s) | 3044, 3251 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2346, 2379 |
| BalI | TGGCCA | 1 cut(s) | 602 |
| BanI | GGYRCC | 2 cut(s) | 2775, 3039 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 126, 158 |
| BbsI | GAAGAC | 1 cut(s) | 1910 |
| Bbv12I | GWGCWC | 7 cut(s) | 28, 768, 846, 1057, 2055, 2506, 2931 |
| BbvCI | CCTCAGC | 1 cut(s) | 2786 |
| BbvI | GCAGC | 8 cut(s) | 46, 96, 757, 939, 2985, 3134, 3137, 3647 |
| BceAI | ACGGC | 1 cut(s) | 2763 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1528, 1562 |
| BciVI | GTATCC | 2 cut(s) | 1396, 3531 |
| BclI | TGATCA | 1 cut(s) | 1803 |
| BcoDI | GTCTC | 9 cut(s) | 324, 756, 968, 1904, 2538, 3223, 3383, 3495, 3671 |
| BcuI | ACTAGT | 1 cut(s) | 1120 |
| BfaI | CTAG | 8 cut(s) | 783, 984, 1121, 1391, 1485, 2612, 3257, 3674 |
| BfmI | CTRYAG | 3 cut(s) | 771, 1059, 2999 |
| BfuI | GTATCC | 2 cut(s) | 1396, 3531 |
| BlnI | CCTAGG | 1 cut(s) | 983 |
| BlpI | GCTNAGC | 1 cut(s) | 3143 |
| BmcAI | AGTACT | 6 cut(s) | 412, 1544, 2106, 2115, 2253, 3005 |
| Bme18I | GGWCC | 2 cut(s) | 1568, 3398 |
| BmgBI | CACGTC | 1 cut(s) | 2522 |
| BmgT120I | GGNCC | 3 cut(s) | 1568, 3398, 3734 |
| BmiI | GGNNCC | 2 cut(s) | 2777, 3041 |
| BmrI | ACTGGG | 4 cut(s) | 1215, 1265, 2243, 3333 |
| BmuI | ACTGGG | 4 cut(s) | 1215, 1265, 2243, 3333 |
| BpiI | GAAGAC | 1 cut(s) | 1910 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 2488, 2520, 2870, 2902 |
| BpmI | CTGGAG | 3 cut(s) | 2708, 2801, 2870 |
| Bpu10I | CCTNAGC | 4 cut(s) | 762, 2477, 2786, 3480 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3143 |
| Bpu14I | TTCGAA | 1 cut(s) | 717 |
| BpuEI | CTTGAG | 8 cut(s) | 12, 48, 227, 1338, 1696, 2483, 3365, 3470 |
| BsaAI | YACGTR | 1 cut(s) | 3367 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1171 |
| BsaHI | GRCGYC | 1 cut(s) | 3518 |
| BsaI | GGTCTC | 1 cut(s) | 968 |
| BsaJI | CCNNGG | 7 cut(s) | 919, 983, 1265, 1576, 3160, 3387, 3723 |
| BsaWI | WCCGGW | 3 cut(s) | 1648, 2875, 3177 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1535, 1565, 2550, 2580, 3063, 3093 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 984, 1577, 2255, 2804, 3074, 3301, 3534, 3709 |
| Bse1I | ACTGG | 7 cut(s) | 1210, 1260, 1571, 2249, 2423, 3102, 3339 |
| Bse21I | CCTNAGG | 2 cut(s) | 2306, 2991 |
| Bse3DI | GCAATG | 2 cut(s) | 2593, 3357 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1171 |
| BseAI | TCCGGA | 2 cut(s) | 2875, 3177 |
| BseDI | CCNNGG | 7 cut(s) | 919, 983, 1265, 1576, 3160, 3387, 3723 |
| BseJI | GATNNNNATC | 1 cut(s) | 1171 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 984, 1577, 2255, 2804, 3074, 3301, 3534, 3709 |
| BseMI | GCAATG | 2 cut(s) | 2593, 3357 |
| BseMII | CTCAG | 6 cut(s) | 753, 2079, 2297, 2468, 2777, 2982 |
| BseNI | ACTGG | 7 cut(s) | 1210, 1260, 1571, 2249, 2423, 3102, 3339 |
| BseRI | GAGGAG | 4 cut(s) | 1543, 2480, 2720, 2931 |
| BseSI | GKGCMC | 2 cut(s) | 3044, 3251 |
| BseXI | GCAGC | 8 cut(s) | 46, 96, 757, 939, 2985, 3134, 3137, 3647 |
| BseYI | CCCAGC | 3 cut(s) | 1850, 2507, 3134 |
| BsgI | GTGCAG | 2 cut(s) | 2992, 3136 |
| BshFI | GGCC | 7 cut(s) | 602, 2074, 3078, 3478, 3563, 3735, 3745 |
| BshNI | GGYRCC | 2 cut(s) | 2775, 3039 |
| BsiHKAI | GWGCWC | 7 cut(s) | 28, 768, 846, 1057, 2055, 2506, 2931 |
| BsiSI | CCGG | 4 cut(s) | 1649, 2648, 2876, 3178 |
| BslFI | GGGAC | 4 cut(s) | 633, 965, 2231, 3684 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 984, 1577, 2255, 2804, 3074, 3301, 3534, 3709 |
| BsmAI | GTCTC | 9 cut(s) | 324, 756, 968, 1904, 2538, 3223, 3383, 3495, 3671 |
| BsmBI | CGTCTC | 3 cut(s) | 3223, 3383, 3671 |
| BsmFI | GGGAC | 4 cut(s) | 633, 965, 2231, 3684 |
| BsmI | GAATGC | 2 cut(s) | 2231, 2843 |
| BsnI | GGCC | 7 cut(s) | 602, 2074, 3078, 3478, 3563, 3735, 3745 |
| Bso31I | GGTCTC | 1 cut(s) | 968 |
| Bsp119I | TTCGAA | 1 cut(s) | 717 |
| Bsp1286I | GDGCHC | 9 cut(s) | 28, 768, 846, 1057, 2055, 2506, 2931, 3044, 3251 |
| Bsp13I | TCCGGA | 2 cut(s) | 2875, 3177 |
| Bsp1407I | TGTACA | 4 cut(s) | 1522, 2275, 2893, 2955 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3143 |
| Bsp19I | CCATGG | 1 cut(s) | 1265 |
| BspACI | CCGC | 9 cut(s) | 152, 2230, 2481, 2556, 2743, 2827, 2972, 3138, 3732 |
| BspANI | GGCC | 7 cut(s) | 602, 2074, 3078, 3478, 3563, 3735, 3745 |
| BspCNI | CTCAG | 6 cut(s) | 754, 2080, 2298, 2469, 2778, 2983 |
| BspEI | TCCGGA | 2 cut(s) | 2875, 3177 |
| BspHI | TCATGA | 1 cut(s) | 1692 |
| BspLI | GGNNCC | 2 cut(s) | 2777, 3041 |
| BspMAI | CTGCAG | 2 cut(s) | 775, 3003 |
| BspPI | GGATC | 3 cut(s) | 749, 1267, 1330 |
| BspQI | GCTCTTC | 1 cut(s) | 1611 |
| BspT104I | TTCGAA | 1 cut(s) | 717 |
| BspT107I | GGYRCC | 2 cut(s) | 2775, 3039 |
| BspTNI | GGTCTC | 1 cut(s) | 968 |
| BsrBI | CCGCTC | 3 cut(s) | 2481, 2745, 3732 |
| BsrDI | GCAATG | 2 cut(s) | 2593, 3357 |
| BsrGI | TGTACA | 4 cut(s) | 1522, 2275, 2893, 2955 |
| BsrI | ACTGG | 7 cut(s) | 1210, 1260, 1571, 2249, 2423, 3102, 3339 |
| BssECI | CCNNGG | 7 cut(s) | 919, 983, 1265, 1576, 3160, 3387, 3723 |
| BssNI | GRCGYC | 1 cut(s) | 3518 |
| BssT1I | CCWWGG | 7 cut(s) | 919, 983, 1265, 1576, 3160, 3387, 3723 |
| Bst4CI | ACNGT | 6 cut(s) | 693, 958, 1231, 1344, 2084, 2969 |
| Bst6I | CTCTTC | 7 cut(s) | 876, 1081, 1611, 2757, 2949, 3021, 3228 |
| BstACI | GRCGYC | 1 cut(s) | 3518 |
| BstAUI | TGTACA | 4 cut(s) | 1522, 2275, 2893, 2955 |
| BstBAI | YACGTR | 1 cut(s) | 3367 |
| BstBI | TTCGAA | 1 cut(s) | 717 |
| BstC8I | GCNNGC | 3 cut(s) | 768, 1811, 3140 |
| BstDSI | CCRYGG | 1 cut(s) | 1265 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 982 |
| BstHHI | GCGC | 3 cut(s) | 1551, 2043, 3660 |
| BstMAI | GTCTC | 9 cut(s) | 324, 756, 968, 1904, 2538, 3223, 3383, 3495, 3671 |
| BstNSI | RCATGY | 4 cut(s) | 130, 1529, 1988, 2282 |
| BstSFI | CTRYAG | 3 cut(s) | 771, 1059, 2999 |
| BstSLI | GKGCMC | 2 cut(s) | 3044, 3251 |
| BstV1I | GCAGC | 8 cut(s) | 46, 96, 757, 939, 2985, 3134, 3137, 3647 |
| BstV2I | GAAGAC | 1 cut(s) | 1910 |
| BstX2I | RGATCY | 2 cut(s) | 741, 1259 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1726 |
| BstYI | RGATCY | 2 cut(s) | 741, 1259 |
| Bsu36I | CCTNAGG | 2 cut(s) | 2306, 2991 |
| BsuI | GTATCC | 2 cut(s) | 1396, 3531 |
| BsuRI | GGCC | 7 cut(s) | 602, 2074, 3078, 3478, 3563, 3735, 3745 |
| BtgI | CCRYGG | 1 cut(s) | 1265 |
| BtrI | CACGTC | 1 cut(s) | 2522 |
| BtsI | GCAGTG | 2 cut(s) | 2737, 3116 |
| BtsIMutI | CAGTG | 5 cut(s) | 1349, 2089, 2737, 3116, 3346 |
| Cac8I | GCNNGC | 3 cut(s) | 768, 1811, 3140 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2305, 2761 |
| CciI | TCATGA | 1 cut(s) | 1692 |
| CfoI | GCGC | 3 cut(s) | 1551, 2043, 3660 |
| Cfr13I | GGNCC | 3 cut(s) | 1568, 3398, 3734 |
| CseI | GACGC | 1 cut(s) | 3688 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 951, 986, 2004, 2039 |
| DraI | TTTAAA | 5 cut(s) | 91, 735, 1617, 1756, 1944 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 3523 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 3523 |
| EaeI | YGGCCR | 2 cut(s) | 600, 2072 |
| Eam1104I | CTCTTC | 7 cut(s) | 876, 1081, 1611, 2757, 2949, 3021, 3228 |
| EarI | CTCTTC | 7 cut(s) | 876, 1081, 1611, 2757, 2949, 3021, 3228 |
| Eco130I | CCWWGG | 7 cut(s) | 919, 983, 1265, 1576, 3160, 3387, 3723 |
| Eco147I | AGGCCT | 1 cut(s) | 3078 |
| Eco31I | GGTCTC | 1 cut(s) | 968 |
| Eco47I | GGWCC | 2 cut(s) | 1568, 3398 |
| Eco57I | CTGAAG | 5 cut(s) | 59, 1614, 1730, 2738, 3209 |
| Eco81I | CCTNAGG | 2 cut(s) | 2306, 2991 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 982 |
| EcoRI | GAATTC | 3 cut(s) | 491, 1778, 3599 |
| EcoT14I | CCWWGG | 7 cut(s) | 919, 983, 1265, 1576, 3160, 3387, 3723 |
| EcoT22I | ATGCAT | 1 cut(s) | 1500 |
| ErhI | CCWWGG | 7 cut(s) | 919, 983, 1265, 1576, 3160, 3387, 3723 |
| Esp3I | CGTCTC | 3 cut(s) | 3223, 3383, 3671 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 728, 760 |
| FaqI | GGGAC | 4 cut(s) | 633, 965, 2231, 3684 |
| FauI | CCCGC | 1 cut(s) | 3131 |
| FbaI | TGATCA | 1 cut(s) | 1803 |
| FblI | GTMKAC | 3 cut(s) | 2986, 3094, 3334 |
| FspBI | CTAG | 8 cut(s) | 783, 984, 1121, 1391, 1485, 2612, 3257, 3674 |
| FspI | TGCGCA | 1 cut(s) | 2042 |
| GlaI | GCGC | 3 cut(s) | 1550, 2042, 3659 |
| GsaI | CCCAGC | 3 cut(s) | 1854, 2511, 3138 |
| GsuI | CTGGAG | 3 cut(s) | 2708, 2801, 2870 |
| HaeIII | GGCC | 7 cut(s) | 602, 2074, 3078, 3478, 3563, 3735, 3745 |
| HapII | CCGG | 4 cut(s) | 1649, 2648, 2876, 3178 |
| HgaI | GACGC | 1 cut(s) | 3688 |
| HhaI | GCGC | 3 cut(s) | 1551, 2043, 3660 |
| Hin1I | GRCGYC | 1 cut(s) | 3518 |
| Hin6I | GCGC | 3 cut(s) | 1549, 2041, 3658 |
| HinP1I | GCGC | 3 cut(s) | 1549, 2041, 3658 |
| HincII | GTYRAC | 6 cut(s) | 447, 724, 2472, 2712, 3095, 3234 |
| HindII | GTYRAC | 6 cut(s) | 447, 724, 2472, 2712, 3095, 3234 |
| HindIII | AAGCTT | 1 cut(s) | 203 |
| HinfI | GANTC | 9 cut(s) | 443, 749, 1466, 1652, 2539, 2674, 3053, 3419, 3625 |
| HpaI | GTTAAC | 2 cut(s) | 2712, 3234 |
| HpaII | CCGG | 4 cut(s) | 1649, 2648, 2876, 3178 |
| HphI | GGTGA | 4 cut(s) | 2548, 2638, 3364, 3658 |
| Hpy188I | TCNGA | 8 cut(s) | 490, 1009, 1749, 1953, 2350, 2526, 3615, 3630 |
| Hpy99I | CGWCG | 1 cut(s) | 2437 |
| HpyAV | CCTTC | 6 cut(s) | 516, 520, 1027, 2440, 2617, 3651 |
| HpyCH4III | ACNGT | 6 cut(s) | 693, 958, 1231, 1344, 2084, 2969 |
| HpyCH4IV | ACGT | 6 cut(s) | 906, 2035, 2343, 2521, 3366, 3518 |
| HpySE526I | ACGT | 6 cut(s) | 906, 2035, 2343, 2521, 3366, 3518 |
| Hsp92I | GRCGYC | 1 cut(s) | 3518 |
| HspAI | GCGC | 3 cut(s) | 1549, 2041, 3658 |
| Kpn2I | TCCGGA | 2 cut(s) | 2875, 3177 |
| Ksp22I | TGATCA | 1 cut(s) | 1803 |
| KspAI | GTTAAC | 2 cut(s) | 2712, 3234 |
| LguI | GCTCTTC | 1 cut(s) | 1611 |
| LmnI | GCTCC | 7 cut(s) | 1060, 1556, 2062, 2509, 2728, 2926, 3412 |
| Lsp1109I | GCAGC | 8 cut(s) | 46, 96, 757, 939, 2985, 3134, 3137, 3647 |
| MaeI | CTAG | 8 cut(s) | 783, 984, 1121, 1391, 1485, 2612, 3257, 3674 |
| MaeII | ACGT | 6 cut(s) | 906, 2035, 2343, 2521, 3366, 3518 |
| MaeIII | GTNAC | 4 cut(s) | 937, 1201, 1644, 3296 |
| MbiI | CCGCTC | 3 cut(s) | 2481, 2745, 3732 |
| MfeI | CAATTG | 7 cut(s) | 1176, 1656, 2492, 2766, 2889, 3023, 3694 |
| MflI | RGATCY | 2 cut(s) | 741, 1259 |
| MhlI | GDGCHC | 9 cut(s) | 28, 768, 846, 1057, 2055, 2506, 2931, 3044, 3251 |
| MlsI | TGGCCA | 1 cut(s) | 602 |
| MluNI | TGGCCA | 1 cut(s) | 602 |
| MlyI | GAGTC | 3 cut(s) | 452, 758, 3062 |
| MmeI | TCCRAC | 4 cut(s) | 177, 499, 1363, 2220 |
| Mox20I | TGGCCA | 1 cut(s) | 602 |
| Mph1103I | ATGCAT | 1 cut(s) | 1500 |
| MroI | TCCGGA | 2 cut(s) | 2875, 3177 |
| MscI | TGGCCA | 1 cut(s) | 602 |
| MslI | CAYNNNNRTG | 1 cut(s) | 874 |
| Msp20I | TGGCCA | 1 cut(s) | 602 |
| MspA1I | CMGCKG | 3 cut(s) | 1850, 2556, 3138 |
| MspI | CCGG | 4 cut(s) | 1649, 2648, 2876, 3178 |
| MssI | GTTTAAAC | 1 cut(s) | 1944 |
| MunI | CAATTG | 7 cut(s) | 1176, 1656, 2492, 2766, 2889, 3023, 3694 |
| Mva1269I | GAATGC | 2 cut(s) | 2231, 2843 |
| NcoI | CCATGG | 1 cut(s) | 1265 |
| NlaIV | GGNNCC | 2 cut(s) | 2777, 3041 |
| NmuCI | GTSAC | 2 cut(s) | 937, 3296 |
| NsbI | TGCGCA | 1 cut(s) | 2042 |
| NsiI | ATGCAT | 1 cut(s) | 1500 |
| NspI | RCATGY | 4 cut(s) | 130, 1529, 1988, 2282 |
| NspV | TTCGAA | 1 cut(s) | 717 |
| PagI | TCATGA | 1 cut(s) | 1692 |
| PceI | AGGCCT | 1 cut(s) | 3078 |
| PciI | ACATGT | 3 cut(s) | 1525, 1984, 2278 |
| PciSI | GCTCTTC | 1 cut(s) | 1611 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 774 |
| PctI | GAATGC | 2 cut(s) | 2231, 2843 |
| PfeI | GAWTC | 6 cut(s) | 1466, 1652, 2539, 2674, 3419, 3625 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1577, 2255 |
| PleI | GAGTC | 3 cut(s) | 451, 757, 3061 |
| PmeI | GTTTAAAC | 1 cut(s) | 1944 |
| PpsI | GAGTC | 3 cut(s) | 451, 757, 3061 |
| Ppu21I | YACGTR | 1 cut(s) | 3367 |
| PscI | ACATGT | 3 cut(s) | 1525, 1984, 2278 |
| PshBI | ATTAAT | 1 cut(s) | 2151 |
| PsiI | TTATAA | 1 cut(s) | 1974 |
| Psp1406I | AACGTT | 1 cut(s) | 2343 |
| PspFI | CCCAGC | 3 cut(s) | 1850, 2507, 3134 |
| PspN4I | GGNNCC | 2 cut(s) | 2777, 3041 |
| PspPI | GGNCC | 3 cut(s) | 1568, 3398, 3734 |
| PstI | CTGCAG | 2 cut(s) | 775, 3003 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2305, 2761 |
| PsuI | RGATCY | 2 cut(s) | 741, 1259 |
| PvuII | CAGCTG | 1 cut(s) | 1850 |
| RseI | CAYNNNNRTG | 1 cut(s) | 874 |
| SalI | GTCGAC | 1 cut(s) | 3093 |
| SapI | GCTCTTC | 1 cut(s) | 1611 |
| Sau96I | GGNCC | 3 cut(s) | 1568, 3398, 3734 |
| ScaI | AGTACT | 6 cut(s) | 412, 1544, 2106, 2115, 2253, 3005 |
| SchI | GAGTC | 3 cut(s) | 452, 758, 3062 |
| SduI | GDGCHC | 9 cut(s) | 28, 768, 846, 1057, 2055, 2506, 2931, 3044, 3251 |
| SfcI | CTRYAG | 3 cut(s) | 771, 1059, 2999 |
| SfuI | TTCGAA | 1 cut(s) | 717 |
| SinI | GGWCC | 2 cut(s) | 1568, 3398 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 874 |
| SmlI | CTYRAG | 8 cut(s) | 27, 63, 206, 1353, 1675, 2462, 3380, 3485 |
| SmoI | CTYRAG | 8 cut(s) | 27, 63, 206, 1353, 1675, 2462, 3380, 3485 |
| SpeI | ACTAGT | 1 cut(s) | 1120 |
| SseBI | AGGCCT | 1 cut(s) | 3078 |
| SsiI | CCGC | 9 cut(s) | 152, 2230, 2481, 2556, 2743, 2827, 2972, 3138, 3732 |
| SspI | AATATT | 5 cut(s) | 1029, 1224, 1418, 1426, 1480 |
| SspMI | CTAG | 8 cut(s) | 783, 984, 1121, 1391, 1485, 2612, 3257, 3674 |
| StuI | AGGCCT | 1 cut(s) | 3078 |
| StyI | CCWWGG | 7 cut(s) | 919, 983, 1265, 1576, 3160, 3387, 3723 |
| TaaI | ACNGT | 6 cut(s) | 693, 958, 1231, 1344, 2084, 2969 |
| TaiI | ACGT | 6 cut(s) | 909, 2038, 2346, 2524, 3369, 3521 |
| TauI | GCSGC | 3 cut(s) | 2232, 2745, 3735 |
| TfiI | GAWTC | 6 cut(s) | 1466, 1652, 2539, 2674, 3419, 3625 |
| TscAI | CASTG | 5 cut(s) | 1349, 2089, 2744, 3116, 3346 |
| TseFI | GTSAC | 2 cut(s) | 937, 3296 |
| TseI | GCWGC | 8 cut(s) | 59, 109, 770, 927, 2998, 3147, 3150, 3660 |
| Tsp45I | GTSAC | 2 cut(s) | 937, 3296 |
| TspGWI | ACGGA | 6 cut(s) | 583, 2450, 3284, 3390, 3634, 3725 |
| TspRI | CASTG | 5 cut(s) | 1349, 2089, 2744, 3116, 3346 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1577, 2255 |
| VpaK11BI | GGWCC | 2 cut(s) | 1568, 3398 |
| VspI | ATTAAT | 1 cut(s) | 2151 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 982 |
| XbaI | TCTAGA | 3 cut(s) | 1390, 2611, 3256 |
| XceI | RCATGY | 4 cut(s) | 130, 1529, 1988, 2282 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 610 |
| XmaJI | CCTAGG | 1 cut(s) | 983 |
| XmiI | GTMKAC | 3 cut(s) | 2986, 3094, 3334 |
| XspI | CTAG | 8 cut(s) | 783, 984, 1121, 1391, 1485, 2612, 3257, 3674 |
| ZraI | GACGTC | 1 cut(s) | 3519 |
| ZrmI | AGTACT | 6 cut(s) | 412, 1544, 2106, 2115, 2253, 3005 |
| Zsp2I | ATGCAT | 1 cut(s) | 1500 |