Rroxscaffold_5G00361220

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
41870736 .. 41877904
7169 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00361220.1

Sequence Viewer

Length: 3837 bp
ATGTTTGTACTCTCTCTCCTTGAATCCGCTGCCGGAGAAGTGGTGAGTAAGGTGACTTCACTCGCTACTGATCAATTGAGACTCGATATCGTCTGGGGGTTCCGCAAAGAGATAAATAAGCTCAAAGAATCCTCAACTCTGATTGGAGATATAATCCATGATGCTTCTCATGAACCTGAAGATCGGGAACTGCGGGCAAGGGCCAATTGGATGAAGAGGCTTACAAGCGTAGCTTATAATGCAGACGATATTCTGGATGAAATAGAATATGAAGTTCATCGGATCGTTATAGAGGAGACAAGCCTGGATAAGAAGATACTCGGCTTCTTCTGCAACAATCCTGTTGTATTTCGTCTCGAGATGGCATGCAAGATTTACAACATCAACACATCCTTGGATGATCTCTACAAGAAAGCAGGTGGCGTGGGACTCGGCATGACAAGGAGATCAAATGGAGGTGCAGCAGCAAGAAAAGATCAGCGGGAAACAACCTCATTCATTGAGAAAAATGAATTCACCTTCAAAGATGCAATCATTGTTGGAAGGGTGGTTGAGGTGGTGTCAAATATAATTGCAACCTCGACCAACTCCAACAATCAAGAAAAGATTCTTTCGGTGATGGCCATTGTGGGATTGGGAGGCCTAGGTAAAACAACTTTGGCTCGCTCAATCACCAAGCAACTGAAAGAAGGTGATATGGAAAAATACTTTCATGCAACATTATGGGTGTATGTATCCAATACTTTTGATGTCAATTCAATTTTACATGGAATGGTGCAATCATGTGGCGTGACGGGAATAGACTCTTCAAATCAGCAAGCATTGATGGAAAGCCTCCAGCAGAAGTTGGAACAAAAAAGGTATTTTCTTGTACTTGATGACGTTTGGAATGAGAATGCTAACAATTGGGATGATTTGAAGCGTTGTCTGTTGCAACTAAATTCTGCTAAAGGAAGCTTTGTGATTGTCACCACCCGTAGTGCCAAGGTAGCATCAATCATGGAAACACTTCCTAGGTGCGATCTAGGGACTCTATCGGATGATGAATGTTGGTCCATATTGAAGGATAGAGCATTTGCAGATGCTAATGCTCCAATACCTTCAGAACTAGAGAAAATCGGAAGGGACATTGCCAAAAAGTGTGCTGGTCTTCCTTTGGCGGCAAAGGTTTTGGGAAGCTTGATGCGTTCTAAGAACAGTCGTAAGGAATGGTTGTCAATTTTGGAAAGTAAAATATGGCAAGTATCATTAGACAAAAAGGATAGCAGGATCGTGTCGGTTTTGAGGTTGAGTTTTGACTTTTTGGAATCACCATTGAAACAATGTTTTTCATATTGCTCCATGCTCAAGAAAGGTTCCTCAATTGGAAGAGATGACTTGATCCAACTATGGATGGCTCAAGGTTTTCTGTATCCTTCTCATGATCACCAGAGCAGGCAAGGGATTGAAATGGAGGATATAGGCAATAAGTATTTTGATACTCTACTGGAGAACTCCTTGTTTCAAGATGCTACAAAGGATGAGGATGGCGTTATCACTCAATGCAAGATGCACGATCTTTTGCATGATTGTGCAATAGAAGTATCCGTGTGTGAGAGTTGGACACCAGAGTTCGATAATGAGATGGATGATGGTGCGATTCGACATGTCGCACGGATTCCTACTCAAAAGCTAGAAAGTATGCCAAAAGCAAGTATTTCAAGACTGCGATCACTCTTTTCAAATGGCCCTGTCTCTAATACCATTTTCCAAAAGCTTACAAGTTTACGTGTCTTAAGTTTCTCTTGGCAAGCTGAAGCACTTGAGGAGTTGCCGTATTCACTTGGCAAGCTGAAGCACTTGAGGTATCTAGATCTTTCACGTACAAAAATTGAAGCACTCCCAGAGTCTATTGGCAAGCTCTATAACCTCCAAACATTGAAATTACATTGGAATCTTAAAAAGTGTCCAAAGATGATTCAAAATTTGATCAACTTGAAGCATTTTTACTTCTATAGGAGAATGAAATTTGAGGCTGGGATTTTGGGGCGATTAACTAATCTCCGAACATTGCGCGACTTTAATGTGGGTAAGGAGGAGAGAGGTCCTGCAATTAAGGAGTTGGGTGGGTTGAACCAATTGAGAGGCCACTTAATTATTCGGAATCTAGAAGATGTAAGGGACGGAGAAGAAGCAAAGAAGGCTTTCTTAGTGGAGAAAAGTCACTTAAGTGAGTTGACTTTTGACTGGTCACTCAGGCCAACTAATAACAATGAGACGGATGTACTAGATGGCTTGGAACCTCATGGTAACTTGCAAAGCTTGAACATTAAGTATTTCAAGGGTGCTAGATTTCCGTCATGGATAACGAGTCTCCAAAATTTGAAGCAGATTCGGTTACGGGGATGCGACAATTTTGAAGGAGTCCTAACACTCGGTCACGTGCCTAATCTTGAGATTGAACGGATGGAAAAGCTGAAACGTGTGGGAGCTGAGGTTTATGGTTATAGTGATACTAGCACAACTTTATTTCCAGCTCTGAAAACACTATCCATCTCTTGGTGCAAACAGCTCATTGAATGGATAGAAGCACCGAGGATATCAGCTGAAGTAGAAATCGTGGTATTTCCTTGCCTCGAAGAGTTGAGCATAGACAATTGTCACAGCCTAGAGTCGATTCGGATCACACAGGGCATCGCATCTCTCCGTGAATTGAAGATTTGCGATTGTTATTCATTATCAAGCCTAAAGGTTGGGCTCGATAACTGCACCTCTCTTCAGAAGTTGGAGATAGGTGTTTGCCCTGTTCTGGTTTCAATTCCAATCCTACAGGGCATGCCGTCTCTCCGGAAATTGTATCTCTACAACTGTGGTAGATTGTCAAGCCTAGGAAGTGGGCTCAGATACTGCACCTCTCTTCAGGAGTTGGTGATAAGTCATTGCCGTGGTCTGGTTTCAATTCCAAACGCACAGGGCATACCGTCTCTCCGGACATTGACGATTAGAAGGTGTGGGGAAATATCAAGCCTAGGAAGTGGGCTCAACTACTGCACCTCTCTTCAGGAATTGGAGATTCGGAGTTGTGACAATATAACATCAATTCCAATCACACAGGGCATCACATCTCTCCGGAGCTTGAAGATTTCTTATTGTAAGAGATTATTAAGCCTACCGAGTGGGCTCCAATTCTGCACCTCTCTTCAGGATCTGTATATAACTGATTGCTCTAGTCTAGTATCCATGTCAGTATCATATGTGAAGTGCGACCACCCGGACTCAACGAATCAACCGGAGGAAATTTCTCAAGGTGTTGATGCGTATTTGTCTTTACCGGAGGAGGATTGCTATACTGTAGAATCTATTCCACCTAATCTTGGTCGGTTGTTGATATGTCATTGTGGGAAATTAAAATATGTGCCCACAGGATTTCACCACCTCACTCGTTTGAAGACGCTCCGAATGGGTCCCTTCTGGGAGGAGCTGGACGCCTTCCCTGATTTTCAGCTTCCACCTAATTCACAACTTGAACGGTTAGCGTTGCAGGGGTGGCCTAAGCTCAAGTCTCTGCCCCAACAAATTCAGCACTCTACTTGTTTAAAAGAACTCTCTATAGAAGATTTTGGGGGACTAGAGGCTCTTCCTGAGTGGTTGGGAAATCTTACATCTCTTGAGTCTCTGTGGATCTGGTCCTGTAAGAATCTCAAGTATCTGCCTACACAAAATGCTATGAAAAACCTCACCAATTTGAAGGAGCTCTCCATTTATGGATGTCCCCTGCTCAAAGAAGGATGCACCAAGGAGACTGGCCCAGAATGGCCCAAGATTTCTCACATTCCAAAAGTTCTCTTTCGCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

1278

Amino Acids

144.09

Weight (kDa)

6.81

Isoelectric Point (pI)

45.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 12 - 94 1.6e-11 Rx N-terminal domain
NB-ARC PF00931 201 - 361 1.9e-31 NB-ARC domain
AAA_22 PF13401 206 - 326 3.6e-08 AAA domain
NACHT PF05729 206 - 339 7.6e-06 NACHT domain
WHD_DRP PF23559 451 - 524 5.4e-21 Disease resistance protein Winged helix domain
LRR_14 PF23598 569 - 924 3.3e-32 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 698 - 812 5.1e-32 R13L1/DRL21 LRRs
LRR_14 PF23598 1168 - 1248 2.2e-06 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 1184 - 1250 7.7e-08 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000029)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13530 FvH4_4g18270 FvH4_6g12200 FvH4_6g12460 FvH4_6g12461 FvH4_6g13450 FvH4_6g15090 FvH4_6g15220 FvH4_6g15230 FvH4_6g15250 FvH4_6g15251 FvH4_6g15340 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47980 FvH4_6g47980 FvH4_6g47980 FvH4_6g48170 FvH4_6g48310 FvH4_6g48310 FvH4_6g48850 FvH4_6g48881 FvH4_7g11830
malus_domestica MD02G1059900.v1.1 MD02G1069600.v1.1 MD02G1069700.v1.1 MD02G1070100.v1.1 MD02G1070200.v1.1 MD02G1070300.v1.1 MD02G1070800.v1.1 MD02G1070900.v1.1 MD02G1071200.v1.1 MD02G1071400.v1.1 MD02G1071900.v1.1 MD02G1075200.v1.1 MD03G1048000.v1.1 MD03G1049100.v1.1 MD03G1049200.v1.1 MD03G1052500.v1.1 MD03G1054100.v1.1 MD03G1054300.v1.1 MD03G1054400.v1.1 MD04G1113400.v1.1 MD04G1211100.v1.1 MD04G1211200.v1.1 MD05G1174900.v1.1 MD05G1175000.v1.1 MD05G1175900.v1.1 MD05G1243400.v1.1 MD07G1031500.v1.1 MD07G1031600.v1.1 MD07G1032500.v1.1 MD11G1046800.v1.1 MD11G1046900.v1.1 MD11G1047000.v1.1 MD11G1050400.v1.1 MD11G1050600.v1.1 MD11G1050800.v1.1 MD11G1051100.v1.1 MD11G1051600.v1.1 MD11G1051700.v1.1 MD11G1054600.v1.1 MD11G1055600.v1.1 MD11G1055700.v1.1 MD11G1055800.v1.1 MD11G1056000.v1.1 MD12G1126600.v1.1 MD12G1126700.v1.1 MD12G1126800.v1.1 MD12G1127300.v1.1 MD12G1127600.v1.1 MD12G1127900.v1.1 MD12G1128100.v1.1 MD12G1128300.v1.1 MD15G1261500.v1.1
prunus_persica Prupe.1G010700_v2.0.a1 Prupe.1G010800_v2.0.a1 Prupe.1G011000_v2.0.a1 Prupe.1G159600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163700_v2.0.a1 Prupe.1G163700_v2.0.a1 Prupe.1G163800_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G235500_v2.0.a1 Prupe.2G067400_v2.0.a1 Prupe.2G067500_v2.0.a1 Prupe.2G111700_v2.0.a1 Prupe.2G111800_v2.0.a1 Prupe.3G012000_v2.0.a1 Prupe.6G243400_v2.0.a1 Prupe.6G243500_v2.0.a1 Prupe.6G243600_v2.0.a1 Prupe.6G243700_v2.0.a1 Prupe.6G243800_v2.0.a1 Prupe.6G243900_v2.0.a1
pyrus_communis pycom02g04860 pycom02g04880 pycom02g04890 pycom02g05510 pycom02g05520 pycom02g05600 pycom02g05930 pycom02g06000 pycom02g06010 pycom03g03800 pycom03g03860 pycom03g03880 pycom03g03890 pycom03g03910 pycom03g03920 pycom03g04200 pycom03g04290 pycom03g04300 pycom03g04310 pycom03g04320 pycom03g09260 pycom04g10150 pycom04g10160 pycom04g10170 pycom05g16180 pycom05g16190 pycom05g16240 pycom05g21980 pycom05g21990 pycom07g02280 pycom11g03800 pycom11g03810 pycom11g04080 pycom11g04140 pycom11g04150 pycom11g04160 pycom11g04570 pycom11g04580 pycom11g04590 pycom11g04610 pycom12g12470 pycom12g12490 pycom13g22050
rosa_chinensis RchiOBHm_Chr1g0317761 RchiOBHm_Chr1g0317821 RchiOBHm_Chr1g0317831 RchiOBHm_Chr1g0317871 RchiOBHm_Chr1g0350501 RchiOBHm_Chr2g0107631 RchiOBHm_Chr3g0452091 RchiOBHm_Chr3g0464001 RchiOBHm_Chr3g0464281 RchiOBHm_Chr3g0466331 RchiOBHm_Chr3g0467341 RchiOBHm_Chr3g0467381 RchiOBHm_Chr3g0467731 RchiOBHm_Chr3g0468291 RchiOBHm_Chr3g0468321 RchiOBHm_Chr3g0468341 RchiOBHm_Chr3g0468391 RchiOBHm_Chr3g0468411 RchiOBHm_Chr3g0468571 RchiOBHm_Chr3g0468591 RchiOBHm_Chr3g0490721 RchiOBHm_Chr3g0490751 RchiOBHm_Chr3g0490761 RchiOBHm_Chr3g0490771 RchiOBHm_Chr3g0490951 RchiOBHm_Chr3g0491001 RchiOBHm_Chr3g0491011 RchiOBHm_Chr4g0412461 RchiOBHm_Chr4g0414161 RchiOBHm_Chr4g0414181 RchiOBHm_Chr4g0414191 RchiOBHm_Chr4g0414281 RchiOBHm_Chr4g0414441 RchiOBHm_Chr4g0414521 RchiOBHm_Chr4g0414531 RchiOBHm_Chr4g0417011 RchiOBHm_Chr4g0417021 RchiOBHm_Chr4g0417041 RchiOBHm_Chr4g0417071 RchiOBHm_Chr4g0417101 RchiOBHm_Chr4g0417531 RchiOBHm_Chr4g0417641 RchiOBHm_Chr4g0417651 RchiOBHm_Chr4g0417701 RchiOBHm_Chr4g0417731 RchiOBHm_Chr4g0417741 RchiOBHm_Chr4g0417781 RchiOBHm_Chr4g0418751 RchiOBHm_Chr4g0418791 RchiOBHm_Chr4g0418861 RchiOBHm_Chr4g0418881 RchiOBHm_Chr4g0418901 RchiOBHm_Chr4g0422451 RchiOBHm_Chr4g0422461 RchiOBHm_Chr4g0422471 RchiOBHm_Chr4g0422541 RchiOBHm_Chr4g0422561 RchiOBHm_Chr4g0422591 RchiOBHm_Chr4g0422651 RchiOBHm_Chr4g0422661 RchiOBHm_Chr5g0003251 RchiOBHm_Chr5g0003261 RchiOBHm_Chr5g0055871 RchiOBHm_Chr7g0204701 RchiOBHm_Chr7g0204741
rosa_laevigata RLG00000007607 RLG00000007932 RLG00000017606 RLG00000024418 RLG00000025629 RLG00000030586
rosa_multiflora Rmu_co7959167.1_g000001 Rmu_co8021330.1_g000001 Rmu_co8132128.1_g000001 Rmu_co8224744.1_g000001 Rmu_co8281865.1_g000001 Rmu_co8298487.1_g000001 Rmu_co8319035.1_g000001 Rmu_co8380035.1_g000001 Rmu_co8385371.1_g000001 Rmu_co8398173.1_g000001 Rmu_co8423363.1_g000001 Rmu_co8438275.1_g000001 Rmu_co8474729.1_g000001 Rmu_sc0000057.1_g000008 Rmu_sc0000350.1_g000023 Rmu_sc0000480.1_g000005 Rmu_sc0000654.1_g000021 Rmu_sc0000654.1_g000029 Rmu_sc0000654.1_g000032 Rmu_sc0000654.1_g000041 Rmu_sc0000654.1_g000045 Rmu_sc0000772.1_g000002 Rmu_sc0000772.1_g000041 Rmu_sc0000808.1_g000040 Rmu_sc0000830.1_g000062 Rmu_sc0000830.1_g000065 Rmu_sc0000830.1_g000072 Rmu_sc0000830.1_g000073 Rmu_sc0000935.1_g000020 Rmu_sc0000935.1_g000024 Rmu_sc0000935.1_g000026 Rmu_sc0000935.1_g000027 Rmu_sc0000935.1_g000031 Rmu_sc0000935.1_g000033 Rmu_sc0000962.1_g000033 Rmu_sc0000962.1_g000036 Rmu_sc0000962.1_g000063 Rmu_sc0000962.1_g000064 Rmu_sc0000962.1_g000065 Rmu_sc0001029.1_g000007 Rmu_sc0001063.1_g000014 Rmu_sc0001149.1_g000010 Rmu_sc0001149.1_g000011 Rmu_sc0001358.1_g000009 Rmu_sc0001448.1_g000003 Rmu_sc0001448.1_g000004 Rmu_sc0001729.1_g000005 Rmu_sc0001729.1_g000007 Rmu_sc0001729.1_g000020 Rmu_sc0001729.1_g000023 Rmu_sc0001793.1_g000015 Rmu_sc0002494.1_g000018 Rmu_sc0002494.1_g000019 Rmu_sc0002604.1_g000022 Rmu_sc0002922.1_g000011 Rmu_sc0003008.1_g000009 Rmu_sc0003221.1_g000061 Rmu_sc0003221.1_g000062 Rmu_sc0003459.1_g000014 Rmu_sc0003480.1_g000015 Rmu_sc0003541.1_g000016 Rmu_sc0003541.1_g000020 Rmu_sc0004035.1_g000001 Rmu_sc0004035.1_g000005 Rmu_sc0004035.1_g000011 Rmu_sc0004142.1_g000004 Rmu_sc0004142.1_g000010 Rmu_sc0004353.1_g000008 Rmu_sc0004616.1_g000009 Rmu_sc0004616.1_g000010 Rmu_sc0005231.1_g000004 Rmu_sc0006380.1_g000025 Rmu_sc0006492.1_g000010 Rmu_sc0006895.1_g000001 Rmu_sc0006895.1_g000002 Rmu_sc0006895.1_g000005 Rmu_sc0007034.1_g000004 Rmu_sc0007104.1_g000006 Rmu_sc0008990.1_g000003 Rmu_sc0008990.1_g000004 Rmu_sc0009106.1_g000003 Rmu_sc0009516.1_g000002 Rmu_sc0009516.1_g000003 Rmu_sc0009516.1_g000004 Rmu_sc0009516.1_g000005 Rmu_sc0009645.1_g000001 Rmu_sc0010274.1_g000001 Rmu_sc0010274.1_g000002 Rmu_sc0010419.1_g000003 Rmu_sc0010917.1_g000017 Rmu_sc0011213.1_g000001 Rmu_sc0011228.1_g000007 Rmu_sc0011538.1_g000011 Rmu_sc0011538.1_g000014 Rmu_sc0011538.1_g000015 Rmu_sc0012211.1_g000006 Rmu_sc0012351.1_g000003 Rmu_sc0012351.1_g000005 Rmu_sc0012915.1_g000002 Rmu_sc0013088.1_g000001 Rmu_sc0013459.1_g000001 Rmu_sc0013765.1_g000004 Rmu_sc0013765.1_g000005 Rmu_sc0014003.1_g000012 Rmu_sc0014003.1_g000014 Rmu_sc0014698.1_g000001 Rmu_sc0015740.1_g000001 Rmu_sc0016429.1_g000003 Rmu_sc0018885.1_g000001 Rmu_sc0020345.1_g000001 Rmu_sc0027791.1_g000001 Rmu_sc0037325.1_g000001 Rmu_ssc0000010.1_g000024 Rmu_ssc0000010.1_g000025 Rmu_ssc0000083.1_g000021 Rmu_ssc0000340.1_g000002 Rmu_ssc0000386.1_g000002 Rmu_ssc0000386.1_g000024 Rmu_ssc0000386.1_g000025 Rmu_ssc0000386.1_g000034 Rmu_ssc0000386.1_g000037 Rmu_ssc0000477.1_g000001
rosa_roxburghii Rroxscaffold_161G00448010 Rroxscaffold_164G00436080 Rroxscaffold_1G00024500 Rroxscaffold_2G00124290 Rroxscaffold_3G00222940 Rroxscaffold_3G00227440 Rroxscaffold_4G00304810 Rroxscaffold_4G00330180 Rroxscaffold_4G00330200 Rroxscaffold_5G00356620 Rroxscaffold_5G00358170 Rroxscaffold_5G00360880 Rroxscaffold_5G00361220 Rroxscaffold_5G00361950 Rroxscaffold_5G00361960 Rroxscaffold_5G00361990 Rroxscaffold_5G00362370 Rroxscaffold_5G00364540 Rroxscaffold_5G00364550 Rroxscaffold_5G00364580 Rroxscaffold_5G00364600 Rroxscaffold_6G00393290 Rroxscaffold_6G00412680 Rroxscaffold_6G00412790 Rroxscaffold_6G00413470 Rroxscaffold_6G00413720 Rroxscaffold_6G00416070 Rroxscaffold_7G00205400
rosa_rugosa Rorug01G0017300 Rorug01G0017400 Rorug01G0018000 Rorug01G0018100 Rorug01G0211500 Rorug02G0638200 Rorug03G0070000 Rorug03G0071200 Rorug03G0081000 Rorug03G0086500 Rorug03G0089300 Rorug03G0095300 Rorug03G0096000 Rorug03G0096000 Rorug04G0055000 Rorug04G0078300 Rorug04G0104100.1 Rorug04G0113800 Rorug04G0126700 Rorug04G0128000 Rorug04G0145900 Rorug04G0148700 Rorug04G0149100 Rorug04G0149100 Rorug04G0149200 Rorug04G0149300 Rorug04G0154900 Rorug04G0180400 Rorug04G0180500 Rorug04G0180700 Rorug04G0180800 Rorug04G0401500 Rorug04G0402100 Rorug05G0288600 Rorug05G0334100 Rorug07G0176400
rosa_samantha Rh1DG043200 Rh1DG043500 Rh1DG043900 Rh1DG222800 Rh3CG039900 Rh3CG156200 Rh3CG328500 Rh3CG328800 Rh3DG165000 Rh4AG208400 Rh4BG205600 Rh4BG213900 Rh4BG243900 Rh4CG198800 Rh4DG168600 Rh4DG180100 Rh4DG180300 Rh4DG180600 Rh4DG181200 Rh4DG181600 Rh4DG181700 Rh4DG183700 Rh4DG184000 Rh4DG184400 Rh4DG184700 Rh4DG206100 Rh4DG206200 Rh4DG206300 Rh4DG215600 Rh4DG238700 Rh4DG238900 Rh5DG390300
rosa_wichuraiana Rw0G005050 Rw0G009260 Rw0G009280 Rw0G015600 Rw0G023570 Rw1G002140 Rw1G002170 Rw1G002210 Rw1G002240 Rw1G019500 Rw2G015490 Rw3G003020 Rw3G010900 Rw3G012030 Rw3G012790 Rw3G013050 Rw3G013540 Rw3G013640 Rw3G013650 Rw3G026050 Rw3G026070 Rw4G015740 Rw4G015790 Rw4G015910 Rw4G015930 Rw4G015950 Rw4G017900 Rw4G017930 Rw4G018440 Rw4G018450 Rw4G018530 Rw4G020720 Rw4G020760 Rw5G019250 Rw5G034370 Rw7G018700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 237
AarI CACCTGC 1 cut(s) 407
Acc36I ACCTGC 1 cut(s) 407
AccB7I CCANNNNNTGG 1 cut(s) 2538
AccII CGCG 1 cut(s) 2055
AccIII TCCGGA 3 cut(s) 2826, 2967, 3108
AciI CCGC 5 cut(s) 27, 103, 193, 481, 1160
AclWI GGATC 6 cut(s) 290, 1277, 1375, 2669, 3192, 3668
AcoI YGGCCR 1 cut(s) 621
AcsI RAATTY 7 cut(s) 512, 940, 1963, 2006, 2359, 3276, 3555
AcuI CTGAAG 9 cut(s) 198, 1086, 1815, 1853, 2607, 2741, 2882, 3023, 3164
AcvI CACGTG 1 cut(s) 2422
AcyI GRCGYC 1 cut(s) 3465
AfaI GTAC 4 cut(s) 9, 873, 1864, 2265
AfiI CCNNNNNNNGG 4 cut(s) 2538, 2788, 2929, 3353
AflII CTTAAG 2 cut(s) 1774, 2206
AflIII ACRYGT 3 cut(s) 1645, 1768, 2461
AjnI CCWGG 1 cut(s) 303
AleI CACNNNNGTG 1 cut(s) 2208
Alw21I GWGCWC 1 cut(s) 3735
AlwI GGATC 6 cut(s) 290, 1277, 1375, 2669, 3192, 3668
AlwNI CAGNNNCTG 2 cut(s) 2886, 3187
Ama87I CYCGRG 1 cut(s) 356
Aor13HI TCCGGA 3 cut(s) 2826, 2967, 3108
AoxI GGCC 9 cut(s) 201, 621, 640, 1726, 2125, 2237, 3527, 3784, 3794
ApeKI GCWGC 3 cut(s) 29, 461, 464
ApoI RAATTY 7 cut(s) 512, 940, 1963, 2006, 2359, 3276, 3555
Asp700I GAANNNNTTC 4 cut(s) 606, 1008, 2183, 3339
AspA2I CCTAGG 4 cut(s) 643, 1013, 2866, 3007
AspLEI GCGC 1 cut(s) 2055
AspS9I GGNCC 8 cut(s) 201, 1053, 1727, 2084, 3443, 3666, 3785, 3795
AsuC2I CCSGG 1 cut(s) 3251
AvaI CYCGRG 1 cut(s) 356
AvaII GGWCC 4 cut(s) 1053, 2084, 3443, 3666
AvrII CCTAGG 4 cut(s) 643, 1013, 2866, 3007
BaeGI GKGCMC 1 cut(s) 3399
BalI TGGCCA 1 cut(s) 623
BanII GRGCYC 5 cut(s) 2739, 2880, 3021, 3162, 3735
BarI GAAGNNNNNNTAC 4 cut(s) 40, 72, 1970, 2002
BbrPI CACGTG 1 cut(s) 2422
BbsI GAAGAC 2 cut(s) 1142, 3434
Bbv12I GWGCWC 1 cut(s) 3735
BbvCI CCTCAGC 1 cut(s) 2472
BbvI GCAGC 3 cut(s) 16, 473, 476
BceAI ACGGC 3 cut(s) 1798, 2803, 2907
BciT130I CCWGG 1 cut(s) 305
BciVI GTATCC 4 cut(s) 745, 1422, 1594, 3226
BclI TGATCA 3 cut(s) 70, 1423, 1968
BcnI CCSGG 1 cut(s) 3251
BfmI CTRYAG 4 cut(s) 1993, 2807, 3330, 3588
BfrI CTTAAG 2 cut(s) 1774, 2206
BfuAI ACCTGC 1 cut(s) 407
BfuI GTATCC 4 cut(s) 745, 1422, 1594, 3226
BglII AGATCT 1 cut(s) 1852
BisI GCNGC 4 cut(s) 30, 462, 465, 1161
BlnI CCTAGG 4 cut(s) 643, 1013, 2866, 3007
BlsI GCNGC 4 cut(s) 31, 463, 466, 1162
Bme1390I CCNGG 2 cut(s) 305, 3251
Bme18I GGWCC 4 cut(s) 1053, 2084, 3443, 3666
BmeT110I CYCGRG 1 cut(s) 356
BmgT120I GGNCC 8 cut(s) 201, 1053, 1727, 2084, 3443, 3666, 3785, 3795
BmiI GGNNCC 6 cut(s) 101, 1357, 2280, 3161, 3444, 3445
BmrFI CCNGG 2 cut(s) 305, 3251
BoxI GACNNNNGTC 1 cut(s) 2637
BpiI GAAGAC 2 cut(s) 1142, 3434
BpmI CTGGAG 2 cut(s) 821, 1508
Bpu10I CCTNAGC 2 cut(s) 2472, 3531
BpuEI CTTGAG 9 cut(s) 1331, 1383, 1823, 1861, 2453, 3267, 3521, 3665, 3668
BpuMI CCSGG 1 cut(s) 3251
BsaAI YACGTR 3 cut(s) 1769, 1862, 2422
BsaBI GATNNNNATC 1 cut(s) 2660
BsaHI GRCGYC 1 cut(s) 3465
BsaJI CCNNGG 9 cut(s) 393, 643, 984, 1013, 2573, 2866, 2923, 3007, 3774
BsaWI WCCGGW 5 cut(s) 2826, 2967, 3108, 3268, 3310
BsaXI ACNNNNNCTCC 9 cut(s) 27, 30, 57, 1799, 1829, 2460, 2490, 2949, 2979
Bsc4I CCNNNNNNNGG 4 cut(s) 2538, 2788, 2929, 3353
Bse1I ACTGG 3 cut(s) 1491, 2231, 3787
Bse3DI GCAATG 3 cut(s) 1128, 2048, 2917
Bse8I GATNNNNATC 1 cut(s) 2660
BseAI TCCGGA 3 cut(s) 2826, 2967, 3108
BseBI CCWGG 1 cut(s) 305
BseDI CCNNGG 9 cut(s) 393, 643, 984, 1013, 2573, 2866, 2923, 3007, 3774
BseJI GATNNNNATC 1 cut(s) 2660
BseLI CCNNNNNNNGG 4 cut(s) 2538, 2788, 2929, 3353
BseMI GCAATG 3 cut(s) 1128, 2048, 2917
BseMII CTCAG 4 cut(s) 2248, 2463, 2893, 3612
BseNI ACTGG 3 cut(s) 1491, 2231, 3787
BseRI GAGGAG 5 cut(s) 308, 1820, 2090, 3329, 3470
BseSI GKGCMC 1 cut(s) 3399
BseXI GCAGC 3 cut(s) 16, 473, 476
BseYI CCCAGC 1 cut(s) 2015
BsgI GTGCAG 5 cut(s) 480, 2731, 2872, 3013, 3154
Bsh1236I CGCG 1 cut(s) 2055
BshFI GGCC 9 cut(s) 203, 623, 642, 1728, 2127, 2239, 3529, 3786, 3796
BsiHKAI GWGCWC 1 cut(s) 3735
BsiHKCI CYCGRG 1 cut(s) 356
BsiSI CCGG 7 cut(s) 33, 2827, 2968, 3109, 3251, 3269, 3311
BslFI GGGAC 7 cut(s) 441, 1042, 1139, 2174, 3429, 3618, 3735
BslI CCNNNNNNNGG 4 cut(s) 2538, 2788, 2929, 3353
BsmBI CGTCTC 4 cut(s) 359, 2249, 2826, 2967
BsmFI GGGAC 7 cut(s) 441, 1042, 1139, 2174, 3429, 3618, 3735
BsmI GAATGC 1 cut(s) 901
BsnI GGCC 9 cut(s) 203, 623, 642, 1728, 2127, 2239, 3529, 3786, 3796
BsoBI CYCGRG 1 cut(s) 356
Bsp1286I GDGCHC 6 cut(s) 2739, 2880, 3021, 3162, 3399, 3735
Bsp13I TCCGGA 3 cut(s) 2826, 2967, 3108
BspACI CCGC 5 cut(s) 27, 103, 193, 481, 1160
BspANI GGCC 9 cut(s) 203, 623, 642, 1728, 2127, 2239, 3529, 3786, 3796
BspCNI CTCAG 4 cut(s) 2247, 2464, 2892, 3613
BspEI TCCGGA 3 cut(s) 2826, 2967, 3108
BspFNI CGCG 1 cut(s) 2055
BspHI TCATGA 2 cut(s) 169, 1420
BspLI GGNNCC 6 cut(s) 101, 1357, 2280, 3161, 3444, 3445
BspMI ACCTGC 1 cut(s) 407
BspPI GGATC 6 cut(s) 290, 1277, 1375, 2669, 3192, 3668
BspQI GCTCTTC 1 cut(s) 3621
BspTI CTTAAG 2 cut(s) 1774, 2206
BsrDI GCAATG 3 cut(s) 1128, 2048, 2917
BsrI ACTGG 3 cut(s) 1491, 2231, 3787
BssECI CCNNGG 9 cut(s) 393, 643, 984, 1013, 2573, 2866, 2923, 3007, 3774
BssNI GRCGYC 1 cut(s) 3465
BssT1I CCWWGG 7 cut(s) 393, 643, 984, 1013, 2866, 3007, 3774
Bst2UI CCWGG 1 cut(s) 305
Bst4CI ACNGT 5 cut(s) 1199, 2849, 2961, 3331, 3510
Bst6I CTCTTC 9 cut(s) 209, 811, 1363, 2613, 2760, 2901, 3042, 3183, 3621
BstACI GRCGYC 1 cut(s) 3465
BstAFI CTTAAG 2 cut(s) 1774, 2206
BstBAI YACGTR 3 cut(s) 1769, 1862, 2422
BstC8I GCNNGC 9 cut(s) 195, 367, 664, 819, 1436, 1791, 1829, 1898, 2816
BstDEI CTNAG 7 cut(s) 1191, 2188, 2234, 2472, 2879, 3531, 3621
BstDSI CCRYGG 1 cut(s) 2923
BstFNI CGCG 1 cut(s) 2055
BstHHI GCGC 1 cut(s) 2055
BstMWI GCNNNNNNNGC 5 cut(s) 239, 330, 989, 2180, 3526
BstNI CCWGG 1 cut(s) 305
BstNSI RCATGY 3 cut(s) 369, 1649, 2818
BstPAI GACNNNNGTC 1 cut(s) 2637
BstSCI CCNGG 2 cut(s) 303, 3249
BstSFI CTRYAG 4 cut(s) 1993, 2807, 3330, 3588
BstSLI GKGCMC 1 cut(s) 3399
BstUI CGCG 1 cut(s) 2055
BstV1I GCAGC 3 cut(s) 16, 473, 476
BstV2I GAAGAC 2 cut(s) 1142, 3434
BstX2I RGATCY 3 cut(s) 1852, 3184, 3660
BstYI RGATCY 3 cut(s) 1852, 3184, 3660
BsuI GTATCC 4 cut(s) 745, 1422, 1594, 3226
BsuRI GGCC 9 cut(s) 203, 623, 642, 1728, 2127, 2239, 3529, 3786, 3796
BtgI CCRYGG 1 cut(s) 2923
BtgZI GCGATG 1 cut(s) 2659
BveI ACCTGC 1 cut(s) 407
Cac8I GCNNGC 9 cut(s) 195, 367, 664, 819, 1436, 1791, 1829, 1898, 2816
CaiI CAGNNNCTG 2 cut(s) 2886, 3187
CciI TCATGA 2 cut(s) 169, 1420
CfoI GCGC 1 cut(s) 2055
Cfr13I GGNCC 8 cut(s) 201, 1053, 1727, 2084, 3443, 3666, 3785, 3795
CseI GACGC 2 cut(s) 3439, 3473
Csp6I GTAC 4 cut(s) 8, 872, 1863, 2264
CviQI GTAC 4 cut(s) 8, 872, 1863, 2264
DdeI CTNAG 7 cut(s) 1191, 2188, 2234, 2472, 2879, 3531, 3621
DraI TTTAAA 1 cut(s) 3576
EaeI YGGCCR 1 cut(s) 621
Eam1104I CTCTTC 9 cut(s) 209, 811, 1363, 2613, 2760, 2901, 3042, 3183, 3621
EarI CTCTTC 9 cut(s) 209, 811, 1363, 2613, 2760, 2901, 3042, 3183, 3621
Ecl136II GAGCTC 1 cut(s) 3733
Eco130I CCWWGG 7 cut(s) 393, 643, 984, 1013, 2866, 3007, 3774
Eco147I AGGCCT 1 cut(s) 642
Eco24I GRGCYC 5 cut(s) 2739, 2880, 3021, 3162, 3735
Eco32I GATATC 2 cut(s) 88, 2580
Eco47I GGWCC 4 cut(s) 1053, 2084, 3443, 3666
Eco53kI GAGCTC 1 cut(s) 3733
Eco57I CTGAAG 9 cut(s) 198, 1086, 1815, 1853, 2607, 2741, 2882, 3023, 3164
Eco72I CACGTG 1 cut(s) 2422
Eco88I CYCGRG 1 cut(s) 356
EcoICRI GAGCTC 1 cut(s) 3733
EcoO109I RGGNCCY 2 cut(s) 2084, 3443
EcoRI GAATTC 1 cut(s) 512
EcoRII CCWGG 1 cut(s) 303
EcoRV GATATC 2 cut(s) 88, 2580
EcoT14I CCWWGG 7 cut(s) 393, 643, 984, 1013, 2866, 3007, 3774
EcoT38I GRGCYC 5 cut(s) 2739, 2880, 3021, 3162, 3735
ErhI CCWWGG 7 cut(s) 393, 643, 984, 1013, 2866, 3007, 3774
Esp3I CGTCTC 4 cut(s) 359, 2249, 2826, 2967
FalI AAGNNNNNCTT 6 cut(s) 217, 249, 1768, 1800, 2171, 2203
FaqI GGGAC 7 cut(s) 441, 1042, 1139, 2174, 3429, 3618, 3735
FauI CCCGC 2 cut(s) 186, 474
FauNDI CATATG 1 cut(s) 3232
FbaI TGATCA 3 cut(s) 70, 1423, 1968
Fnu4HI GCNGC 4 cut(s) 30, 462, 465, 1161
FriOI GRGCYC 5 cut(s) 2739, 2880, 3021, 3162, 3735
Fsp4HI GCNGC 4 cut(s) 30, 462, 465, 1161
GlaI GCGC 1 cut(s) 2054
GluI GCNGC 4 cut(s) 30, 462, 465, 1161
GsaI CCCAGC 1 cut(s) 2019
GsuI CTGGAG 2 cut(s) 821, 1508
HaeIII GGCC 9 cut(s) 203, 623, 642, 1728, 2127, 2239, 3529, 3786, 3796
HapII CCGG 7 cut(s) 33, 2827, 2968, 3109, 3251, 3269, 3311
HgaI GACGC 2 cut(s) 3439, 3473
HhaI GCGC 1 cut(s) 2055
Hin1I GRCGYC 1 cut(s) 3465
Hin6I GCGC 1 cut(s) 2053
HinP1I GCGC 1 cut(s) 2053
HincII GTYRAC 1 cut(s) 2217
HindII GTYRAC 1 cut(s) 2217
HindIII AAGCTT 4 cut(s) 955, 1177, 1754, 2299
HpaII CCGG 7 cut(s) 33, 2827, 2968, 3109, 3251, 3269, 3311
Hpy166II GTNNAC 2 cut(s) 1766, 2217
Hpy8I GTNNAC 2 cut(s) 1766, 2217
HpyCH4III ACNGT 5 cut(s) 1199, 2849, 2961, 3331, 3510
HpyCH4IV ACGT 5 cut(s) 882, 1768, 1861, 2421, 2461
HpyF10VI GCNNNNNNNGC 5 cut(s) 239, 330, 989, 2180, 3526
HpyF3I CTNAG 7 cut(s) 1191, 2188, 2234, 2472, 2879, 3531, 3621
HpySE526I ACGT 5 cut(s) 882, 1768, 1861, 2421, 2461
Hsp92I GRCGYC 1 cut(s) 3465
HspAI GCGC 1 cut(s) 2053
KflI GGGWCCC 1 cut(s) 3443
Kpn2I TCCGGA 3 cut(s) 2826, 2967, 3108
Ksp22I TGATCA 3 cut(s) 70, 1423, 1968
LguI GCTCTTC 1 cut(s) 3621
LmnI GCTCC 8 cut(s) 1096, 1343, 2468, 3111, 3165, 3438, 3457, 3730
Lsp1109I GCAGC 3 cut(s) 16, 473, 476
MaeII ACGT 5 cut(s) 882, 1768, 1861, 2421, 2461
MfeI CAATTG 6 cut(s) 74, 205, 904, 1362, 2117, 2635
MflI RGATCY 3 cut(s) 1852, 3184, 3660
MhlI GDGCHC 6 cut(s) 2739, 2880, 3021, 3162, 3399, 3735
MlsI TGGCCA 1 cut(s) 623
MluNI TGGCCA 1 cut(s) 623
MmeI TCCRAC 6 cut(s) 520, 615, 828, 1408, 1580, 2745
Mox20I TGGCCA 1 cut(s) 623
MroI TCCGGA 3 cut(s) 2826, 2967, 3108
MroXI GAANNNNTTC 4 cut(s) 606, 1008, 2183, 3339
MscI TGGCCA 1 cut(s) 623
MslI CAYNNNNRTG 3 cut(s) 1569, 2208, 2922
Msp20I TGGCCA 1 cut(s) 623
MspA1I CMGCKG 3 cut(s) 29, 481, 2585
MspCI CTTAAG 2 cut(s) 1774, 2206
MspI CCGG 7 cut(s) 33, 2827, 2968, 3109, 3251, 3269, 3311
MspR9I CCNGG 2 cut(s) 305, 3251
MunI CAATTG 6 cut(s) 74, 205, 904, 1362, 2117, 2635
Mva1269I GAATGC 1 cut(s) 901
MvaI CCWGG 1 cut(s) 305
MvnI CGCG 1 cut(s) 2055
MwoI GCNNNNNNNGC 5 cut(s) 239, 330, 989, 2180, 3526
NciI CCSGG 1 cut(s) 3251
NdeI CATATG 1 cut(s) 3232
NlaIV GGNNCC 6 cut(s) 101, 1357, 2280, 3161, 3444, 3445
NmeAIII GCCGAG 2 cut(s) 300, 411
NmuCI GTSAC 8 cut(s) 52, 790, 967, 2201, 2229, 2417, 2639, 3062
NspI RCATGY 3 cut(s) 369, 1649, 2818
OliI CACNNNNGTG 1 cut(s) 2208
PaeI GCATGC 2 cut(s) 369, 2818
PaeR7I CTCGAG 1 cut(s) 356
PagI TCATGA 2 cut(s) 169, 1420
PaqCI CACCTGC 1 cut(s) 407
PceI AGGCCT 1 cut(s) 642
PciI ACATGT 1 cut(s) 1645
PciSI GCTCTTC 1 cut(s) 3621
PctI GAATGC 1 cut(s) 901
PdmI GAANNNNTTC 4 cut(s) 606, 1008, 2183, 3339
PflMI CCANNNNNTGG 1 cut(s) 2538
PkrI GCNGC 4 cut(s) 31, 463, 466, 1162
PmaCI CACGTG 1 cut(s) 2422
PmlI CACGTG 1 cut(s) 2422
Ppu21I YACGTR 3 cut(s) 1769, 1862, 2422
PpuMI RGGWCCY 2 cut(s) 2084, 3443
PscI ACATGT 1 cut(s) 1645
PshAI GACNNNNGTC 1 cut(s) 2637
PsiI TTATAA 1 cut(s) 237
Psp124BI GAGCTC 1 cut(s) 3735
Psp5II RGGWCCY 2 cut(s) 2084, 3443
Psp6I CCWGG 1 cut(s) 303
PspCI CACGTG 1 cut(s) 2422
PspFI CCCAGC 1 cut(s) 2015
PspGI CCWGG 1 cut(s) 303
PspN4I GGNNCC 6 cut(s) 101, 1357, 2280, 3161, 3444, 3445
PspPI GGNCC 8 cut(s) 201, 1053, 1727, 2084, 3443, 3666, 3785, 3795
PspPPI RGGWCCY 2 cut(s) 2084, 3443
PstNI CAGNNNCTG 2 cut(s) 2886, 3187
PsuI RGATCY 3 cut(s) 1852, 3184, 3660
PvuII CAGCTG 1 cut(s) 2585
RsaI GTAC 4 cut(s) 9, 873, 1864, 2265
RsaNI GTAC 4 cut(s) 8, 872, 1863, 2264
RseI CAYNNNNRTG 3 cut(s) 1569, 2208, 2922
SacI GAGCTC 1 cut(s) 3735
SapI GCTCTTC 1 cut(s) 3621
SatI GCNGC 4 cut(s) 30, 462, 465, 1161
Sau96I GGNCC 8 cut(s) 201, 1053, 1727, 2084, 3443, 3666, 3785, 3795
ScrFI CCNGG 2 cut(s) 305, 3251
SduI GDGCHC 6 cut(s) 2739, 2880, 3021, 3162, 3399, 3735
SfcI CTRYAG 4 cut(s) 1993, 2807, 3330, 3588
Sfr274I CTCGAG 1 cut(s) 356
SinI GGWCC 4 cut(s) 1053, 2084, 3443, 3666
SlaI CTCGAG 1 cut(s) 356
SmiMI CAYNNNNRTG 3 cut(s) 1569, 2208, 2922
SphI GCATGC 2 cut(s) 369, 2818
SseBI AGGCCT 1 cut(s) 642
SsiI CCGC 5 cut(s) 27, 103, 193, 481, 1160
SstI GAGCTC 1 cut(s) 3735
StuI AGGCCT 1 cut(s) 642
StyD4I CCNGG 2 cut(s) 303, 3249
StyI CCWWGG 7 cut(s) 393, 643, 984, 1013, 2866, 3007, 3774
TaaI ACNGT 5 cut(s) 1199, 2849, 2961, 3331, 3510
TaiI ACGT 5 cut(s) 885, 1771, 1864, 2424, 2464
TaqI TCGA 8 cut(s) 84, 357, 581, 1614, 1642, 2616, 2654, 2739
TaqII GACCGA 1 cut(s) 2405
TatI WGTACW 3 cut(s) 7, 871, 2263
TauI GCSGC 1 cut(s) 1163
TseFI GTSAC 8 cut(s) 52, 790, 967, 2201, 2229, 2417, 2639, 3062
TseI GCWGC 3 cut(s) 29, 461, 464
Tsp45I GTSAC 8 cut(s) 52, 790, 967, 2201, 2229, 2417, 2639, 3062
TspGWI ACGGA 7 cut(s) 1576, 1669, 2178, 2273, 2325, 2458, 2675
Van91I CCANNNNNTGG 1 cut(s) 2538
Vha464I CTTAAG 2 cut(s) 1774, 2206
VpaK11BI GGWCC 4 cut(s) 1053, 2084, 3443, 3666
XapI RAATTY 7 cut(s) 512, 940, 1963, 2006, 2359, 3276, 3555
XbaI TCTAGA 2 cut(s) 1849, 2146
XceI RCATGY 3 cut(s) 369, 1649, 2818
XcmI CCANNNNNNNNNTGG 1 cut(s) 631
XhoI CTCGAG 1 cut(s) 356
XmaJI CCTAGG 4 cut(s) 643, 1013, 2866, 3007
XmnI GAANNNNTTC 4 cut(s) 606, 1008, 2183, 3339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.