RchiOBHm_Chr4g0412461

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
36269749 .. 36276059
6311 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38313

Sequence Viewer

Length: 4047 bp
ATGGCTGAATTTCTCACTTTTGGGGCTCAAGAATTGCTGAGCAAAGTGGCTTCACTAGCCGCTCAAGAGTTCGATCTTGTATGGGGATTCAATGGAGAAATAACAAAGCTGCGTGAGTCGGTGCTCATGCTTGAGGCTGTGCTACGAGATGCTGAACATCCGCGACAAGATCAGGGAGATGCTGTGAAGCTCTGGGTGAAGAAGCTTGAAGACATAGCTCAGCATGCCGATGATGTGCTGGATGATTATGGATATGAGCTTCTCCGGCGTAGGGTGCAACTGCAAAATCAGATGAAGAGAAAGGTGCAGAACTTTTTTTCCCACTCCAATCCCATCTTTTTTCGTGTTAAAATGGCACATAAAATTAAGAAGATCAACACATCCTTGGATGAGTTGAATAAGAAGGCTAGTGCTATTGGCTTATTTGCTAGACTATCCTTAGATCCAACAACTTCCCATGGTATAAGCATTGACAGGGAAACCTACTCTATCTTAAAACAAGATGAAAACAACATCATTGGAAGGGACGATGTTGTGGCAGATATAGTTCAAGCCTTGACCAAATCAAACCACAATCTGGAAAGTGATCTCTCCGTTCTGGCCATTGTGGGTATGGGAGGGCTTGGAAAGACAACTTTGGCTAAATCAATATATCATGAATCTGAGATAAGTAGGCATTTTGAGAAAAAGATGTGGATATGTGTATCTACCCTTTTTGAAGTCAATTCAATTCTGAGAGGGATATTGGAATATCTTAAACCAGAAAATGCTGCGGTAAAAGGTATAGATGCAATATGTAACATTCTTCAAGAAGAGTTGAAAGGAAAGAGATACCTTCTTATACTTGATGATGTATGGAATGAAGATGTGGAAAAATGGAATGATTTGAAGAGTTGTTTGGTAAGAATTACCGATGCCCAAAGAAGCAGCATTATTGTCACGACTCGCAGTGACAAAGTTGCAAAAACGGTGGAAACCCTTCCTAGGTGTGATTTGAGAAAACTATCGGATGATGAGTGTTGGCTTATATTGAAGAATAAAGCAGTTCCAGTCGGAAGTGTTCCTATACTTGAAGATCAAGAGACAATTGGAAGGGAGATTGCCAAAAAGTGTGGAGGTATACCATTAGTGGCAAAGGTATTAGGAAACATTATGTGCTCTAAAACAAGCAATGAATGGAGTTCAATTATGGAAAGTAAAATGTGGGATTTACCGAAAGAAGAAGAAAGAATCATGTCAATTTTAAAGTTGAGTTTTGATGAATTGAAATTTTCATCATTGAAACAATGTTTTGCATATTGCTCGGAATTCATCAAAGACACTGTAATGGAAAAGGATGACTTAGTCCAACTTTGGATGTCTCAAGGATGGCTTCACCCCACCAAAAGTAATATGGAGATGGAGGATAGAGGGAACGAATATTTTAACATTTTATCAGAAAAATCCCTTTTTGAAGACGTTAGAACTGATTATAAGGGTGATACAACATGCAAGATGCACGATCTTGTGCATGACCTTGCAGAACGAGTATCAAACATGACAAACTGCCGCTCACTATTTTCCAAGGGAGAAGCACTTTGGAACACCTTGCCTAACTTTAGATCTTTACGTGTGTTAAATTTATACAAGGCAGACATTGACAAGTTGCCGAGTTCAATTGGAAAGTTGACACACTTGAGGTATCTGAATGTTATGAAAACAAGAGTGAAGGCATTTCCGAAATCTATTGGTCAACTTTATTACCTTCAGACGTTTAAAATGCCCTATCATGTTGAAGAGTTCCCAAAGATGATAGCTAATATGATCAACTTGAGACATGTTTATTTTGGTAAACATGCGAAAGTTCCTGTTGCCATATTGGGAAGATTGACGAATCTCAGATCATTACCTTTTTTGAAGGTGGGTAAGGAAACTGGGCCTAGGATTGAGGAAATGGGTGGGTTAAACCATTTGAGAGGCACCTTATCCATCTATAATCTGGAGCATGTAAGAGATGGAGAAGAAGCAATGAATGCAAAGTTAGTTGATAAGAAACATATACGCAAGTTAACTCTCGACTGGAAGCTTAGTAGACCAAGCAACAATGTTGACAATGAGGATGATGTACTTGAAGGTCTGCGACCACATTGTAATTTGGAAATTTTGAAGATTCAGGGGTTTATGGGTGTTAAGTTTCCATCATGGTTATTGCTTGCCAGCAACTTGAAAGAAATTGAATTAGCAGGGTGCAACAAATGCGAAGGATTTCCAATATTGGGCCATCTGCCCAATCTTATACATGTTAAGATGGAGGACATGCAGAACCTAAGATGCTTGGGGTCTAAGTTTTATGGTTATGATCAGATTTCAGGTGCAACAACAAGTGACGGGAGAAAGACTTTGTTTCCTGTTTTGAGATCATTACATATTGAGAATGCCGAGAATCTAATAGATTGGATGGAAGCAGGGGACGTGATGCTGATGGCTGGAAAATTAAGGGTGTTTCCTTACCTTGAGGAGCTGCACGTGCTACGATGTAAGCAATTGAGAAGTGCTCCCAGTCATTTTCCATCTCTCAAGATGTTGGTGATACGAGGAGTGGAAAGTGGTTTGCCTATAGCAAATATTTTAAGCAATAAACTGACTACTCTCACTTATCTCTCAGTACATGATGTCGAGGGACTTACTAGTCTTCCGGAAGGGACGTTAAGAAACAACAAGAGTCTTGAATGTTTGCGTATATGCAACTGTTCGGAGTTAAACTGCATTTCTCCCCATGGATTTGACTACTGCGCATCTCTTCAGTTACTGAGAATTTGGAAGTGTCCTAAGTTGAGGTATTTATCTGATGGGCTACTCCCACTCTCTCTCAAGGAGTTGGACATACAAGATTGCTCTGGTCTAGAGTCTATCCCAATCATCCCTGAGCAAGGCGGTCTCCCATCTCTGCGCAAATTGATTATAACCAAGTGTTCTCAGTTATCCAGTTTACCTGATGGGCTACAATACTGCACATCTCTTCAACAATTGGTAATAGACAGCTGCCCAAAGATAACGTCTATTCCAGTCCAATACTGCACATCTCTTCAACTACTGGAGATACGGAGATGCCCAAAAATAACGTTCATTCCAGCTCAATACTGCACATCACTTCAAGACCTGGACATACTGAGCTGCCCAAAGATAATGTCCATTCCAATTCCATCTGAGGGCCTCCCAAATCTTCGTGGACTGCAGCTTTGGCAGTGTCCTGAATTATCAGGCCTACCTAGTGGACTAGGCTGCTGCCCCTCTCTTATTGATTTGTCAATAACAGAGTGCCCTAAGGTTACATCCATTCCAATTAACAGTCTCAGTACAAACCTCCGAAGCTTGTGTGTAGATAATCCAGAGTCTCTTCCAATTTTATACGACGGCTTCACATCCCTCCGTCGATTGGAAATTGAAGGATGTCAAAGTACACAAATTGATCATCCAATCCTCGTCTCTCTTGAGGAGTTGAGAATAAGACGGTGTCCTAATCTAGAGACTGTTCCGAGTTTTGACAAGCTCACATCCCTCCGTGAGTTGTGGATTAGTGATTGTTCCCGATTGACATGTCTACCCAGTGGGTTAGCAATGGCATCCCCACACGTATTCACCCGTCTCAAGCAATTGACACTTGGTCGGTTTTGGAATGAGCTGGATTCATTCCCGGCTCTTCAGGTTCTACCACAACTTGAAACATTGACGATCTTCGGGTGGCCGAAGCTCAAGTCTCTGCCTGAACAAGTTCAACACATGACGTCTTTGACCGAATTGCGGATAGATTCCTTTGAGGGAGTGGAGGCTATTCCAGAATGGTTGGGAAACCTTGCATCTCTTCACTCCTTATATATTTTCCGTTGCAAGAATCTGATGTATCTACCTTCCGTCCAAGCTATGCAACGCCTCACCAAATTAGATTGGCTACGTATCTACAATTGTCCCCTTTTGAGCGAAAGATGCACCGCGGAGAGCGGCCCAGAGTGGCCTAAGATTTCTCATCTTCCATCCATCTCTGTTGATCAAGGACAGGTTATTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

1348

Amino Acids

152.71

Weight (kDa)

6.79

Isoelectric Point (pI)

52.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 11 - 99 1.1e-20 Rx N-terminal domain
NB-ARC PF00931 179 - 350 3.6e-36 NB-ARC domain
WHD_DRP PF23559 437 - 507 7.3e-21 Disease resistance protein Winged helix domain
LRR_14 PF23598 519 - 853 2.4e-30 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 642 - 766 1.8e-36 R13L1/DRL21 LRRs
LRR_14 PF23598 1169 - 1314 3.5e-08 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 1249 - 1308 5.6e-07 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000029)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13530 FvH4_4g18270 FvH4_6g12200 FvH4_6g12460 FvH4_6g12461 FvH4_6g13450 FvH4_6g15090 FvH4_6g15220 FvH4_6g15230 FvH4_6g15250 FvH4_6g15251 FvH4_6g15340 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47980 FvH4_6g47980 FvH4_6g47980 FvH4_6g48170 FvH4_6g48310 FvH4_6g48310 FvH4_6g48850 FvH4_6g48881 FvH4_7g11830
malus_domestica MD02G1059900.v1.1 MD02G1069600.v1.1 MD02G1069700.v1.1 MD02G1070100.v1.1 MD02G1070200.v1.1 MD02G1070300.v1.1 MD02G1070800.v1.1 MD02G1070900.v1.1 MD02G1071200.v1.1 MD02G1071400.v1.1 MD02G1071900.v1.1 MD02G1075200.v1.1 MD03G1048000.v1.1 MD03G1049100.v1.1 MD03G1049200.v1.1 MD03G1052500.v1.1 MD03G1054100.v1.1 MD03G1054300.v1.1 MD03G1054400.v1.1 MD04G1113400.v1.1 MD04G1211100.v1.1 MD04G1211200.v1.1 MD05G1174900.v1.1 MD05G1175000.v1.1 MD05G1175900.v1.1 MD05G1243400.v1.1 MD07G1031500.v1.1 MD07G1031600.v1.1 MD07G1032500.v1.1 MD11G1046800.v1.1 MD11G1046900.v1.1 MD11G1047000.v1.1 MD11G1050400.v1.1 MD11G1050600.v1.1 MD11G1050800.v1.1 MD11G1051100.v1.1 MD11G1051600.v1.1 MD11G1051700.v1.1 MD11G1054600.v1.1 MD11G1055600.v1.1 MD11G1055700.v1.1 MD11G1055800.v1.1 MD11G1056000.v1.1 MD12G1126600.v1.1 MD12G1126700.v1.1 MD12G1126800.v1.1 MD12G1127300.v1.1 MD12G1127600.v1.1 MD12G1127900.v1.1 MD12G1128100.v1.1 MD12G1128300.v1.1 MD15G1261500.v1.1
prunus_persica Prupe.1G010700_v2.0.a1 Prupe.1G010800_v2.0.a1 Prupe.1G011000_v2.0.a1 Prupe.1G159600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163700_v2.0.a1 Prupe.1G163700_v2.0.a1 Prupe.1G163800_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G235500_v2.0.a1 Prupe.2G067400_v2.0.a1 Prupe.2G067500_v2.0.a1 Prupe.2G111700_v2.0.a1 Prupe.2G111800_v2.0.a1 Prupe.3G012000_v2.0.a1 Prupe.6G243400_v2.0.a1 Prupe.6G243500_v2.0.a1 Prupe.6G243600_v2.0.a1 Prupe.6G243700_v2.0.a1 Prupe.6G243800_v2.0.a1 Prupe.6G243900_v2.0.a1
pyrus_communis pycom02g04860 pycom02g04880 pycom02g04890 pycom02g05510 pycom02g05520 pycom02g05600 pycom02g05930 pycom02g06000 pycom02g06010 pycom03g03800 pycom03g03860 pycom03g03880 pycom03g03890 pycom03g03910 pycom03g03920 pycom03g04200 pycom03g04290 pycom03g04300 pycom03g04310 pycom03g04320 pycom03g09260 pycom04g10150 pycom04g10160 pycom04g10170 pycom05g16180 pycom05g16190 pycom05g16240 pycom05g21980 pycom05g21990 pycom07g02280 pycom11g03800 pycom11g03810 pycom11g04080 pycom11g04140 pycom11g04150 pycom11g04160 pycom11g04570 pycom11g04580 pycom11g04590 pycom11g04610 pycom12g12470 pycom12g12490 pycom13g22050
rosa_chinensis RchiOBHm_Chr1g0317761 RchiOBHm_Chr1g0317821 RchiOBHm_Chr1g0317831 RchiOBHm_Chr1g0317871 RchiOBHm_Chr1g0350501 RchiOBHm_Chr2g0107631 RchiOBHm_Chr3g0452091 RchiOBHm_Chr3g0464001 RchiOBHm_Chr3g0464281 RchiOBHm_Chr3g0466331 RchiOBHm_Chr3g0467341 RchiOBHm_Chr3g0467381 RchiOBHm_Chr3g0467731 RchiOBHm_Chr3g0468291 RchiOBHm_Chr3g0468321 RchiOBHm_Chr3g0468341 RchiOBHm_Chr3g0468391 RchiOBHm_Chr3g0468411 RchiOBHm_Chr3g0468571 RchiOBHm_Chr3g0468591 RchiOBHm_Chr3g0490721 RchiOBHm_Chr3g0490751 RchiOBHm_Chr3g0490761 RchiOBHm_Chr3g0490771 RchiOBHm_Chr3g0490951 RchiOBHm_Chr3g0491001 RchiOBHm_Chr3g0491011 RchiOBHm_Chr4g0412461 RchiOBHm_Chr4g0414161 RchiOBHm_Chr4g0414181 RchiOBHm_Chr4g0414191 RchiOBHm_Chr4g0414281 RchiOBHm_Chr4g0414441 RchiOBHm_Chr4g0414521 RchiOBHm_Chr4g0414531 RchiOBHm_Chr4g0417011 RchiOBHm_Chr4g0417021 RchiOBHm_Chr4g0417041 RchiOBHm_Chr4g0417071 RchiOBHm_Chr4g0417101 RchiOBHm_Chr4g0417531 RchiOBHm_Chr4g0417641 RchiOBHm_Chr4g0417651 RchiOBHm_Chr4g0417701 RchiOBHm_Chr4g0417731 RchiOBHm_Chr4g0417741 RchiOBHm_Chr4g0417781 RchiOBHm_Chr4g0418751 RchiOBHm_Chr4g0418791 RchiOBHm_Chr4g0418861 RchiOBHm_Chr4g0418881 RchiOBHm_Chr4g0418901 RchiOBHm_Chr4g0422451 RchiOBHm_Chr4g0422461 RchiOBHm_Chr4g0422471 RchiOBHm_Chr4g0422541 RchiOBHm_Chr4g0422561 RchiOBHm_Chr4g0422591 RchiOBHm_Chr4g0422651 RchiOBHm_Chr4g0422661 RchiOBHm_Chr5g0003251 RchiOBHm_Chr5g0003261 RchiOBHm_Chr5g0055871 RchiOBHm_Chr7g0204701 RchiOBHm_Chr7g0204741
rosa_laevigata RLG00000007607 RLG00000007932 RLG00000017606 RLG00000024418 RLG00000025629 RLG00000030586
rosa_multiflora Rmu_co7959167.1_g000001 Rmu_co8021330.1_g000001 Rmu_co8132128.1_g000001 Rmu_co8224744.1_g000001 Rmu_co8281865.1_g000001 Rmu_co8298487.1_g000001 Rmu_co8319035.1_g000001 Rmu_co8380035.1_g000001 Rmu_co8385371.1_g000001 Rmu_co8398173.1_g000001 Rmu_co8423363.1_g000001 Rmu_co8438275.1_g000001 Rmu_co8474729.1_g000001 Rmu_sc0000057.1_g000008 Rmu_sc0000350.1_g000023 Rmu_sc0000480.1_g000005 Rmu_sc0000654.1_g000021 Rmu_sc0000654.1_g000029 Rmu_sc0000654.1_g000032 Rmu_sc0000654.1_g000041 Rmu_sc0000654.1_g000045 Rmu_sc0000772.1_g000002 Rmu_sc0000772.1_g000041 Rmu_sc0000808.1_g000040 Rmu_sc0000830.1_g000062 Rmu_sc0000830.1_g000065 Rmu_sc0000830.1_g000072 Rmu_sc0000830.1_g000073 Rmu_sc0000935.1_g000020 Rmu_sc0000935.1_g000024 Rmu_sc0000935.1_g000026 Rmu_sc0000935.1_g000027 Rmu_sc0000935.1_g000031 Rmu_sc0000935.1_g000033 Rmu_sc0000962.1_g000033 Rmu_sc0000962.1_g000036 Rmu_sc0000962.1_g000063 Rmu_sc0000962.1_g000064 Rmu_sc0000962.1_g000065 Rmu_sc0001029.1_g000007 Rmu_sc0001063.1_g000014 Rmu_sc0001149.1_g000010 Rmu_sc0001149.1_g000011 Rmu_sc0001358.1_g000009 Rmu_sc0001448.1_g000003 Rmu_sc0001448.1_g000004 Rmu_sc0001729.1_g000005 Rmu_sc0001729.1_g000007 Rmu_sc0001729.1_g000020 Rmu_sc0001729.1_g000023 Rmu_sc0001793.1_g000015 Rmu_sc0002494.1_g000018 Rmu_sc0002494.1_g000019 Rmu_sc0002604.1_g000022 Rmu_sc0002922.1_g000011 Rmu_sc0003008.1_g000009 Rmu_sc0003221.1_g000061 Rmu_sc0003221.1_g000062 Rmu_sc0003459.1_g000014 Rmu_sc0003480.1_g000015 Rmu_sc0003541.1_g000016 Rmu_sc0003541.1_g000020 Rmu_sc0004035.1_g000001 Rmu_sc0004035.1_g000005 Rmu_sc0004035.1_g000011 Rmu_sc0004142.1_g000004 Rmu_sc0004142.1_g000010 Rmu_sc0004353.1_g000008 Rmu_sc0004616.1_g000009 Rmu_sc0004616.1_g000010 Rmu_sc0005231.1_g000004 Rmu_sc0006380.1_g000025 Rmu_sc0006492.1_g000010 Rmu_sc0006895.1_g000001 Rmu_sc0006895.1_g000002 Rmu_sc0006895.1_g000005 Rmu_sc0007034.1_g000004 Rmu_sc0007104.1_g000006 Rmu_sc0008990.1_g000003 Rmu_sc0008990.1_g000004 Rmu_sc0009106.1_g000003 Rmu_sc0009516.1_g000002 Rmu_sc0009516.1_g000003 Rmu_sc0009516.1_g000004 Rmu_sc0009516.1_g000005 Rmu_sc0009645.1_g000001 Rmu_sc0010274.1_g000001 Rmu_sc0010274.1_g000002 Rmu_sc0010419.1_g000003 Rmu_sc0010917.1_g000017 Rmu_sc0011213.1_g000001 Rmu_sc0011228.1_g000007 Rmu_sc0011538.1_g000011 Rmu_sc0011538.1_g000014 Rmu_sc0011538.1_g000015 Rmu_sc0012211.1_g000006 Rmu_sc0012351.1_g000003 Rmu_sc0012351.1_g000005 Rmu_sc0012915.1_g000002 Rmu_sc0013088.1_g000001 Rmu_sc0013459.1_g000001 Rmu_sc0013765.1_g000004 Rmu_sc0013765.1_g000005 Rmu_sc0014003.1_g000012 Rmu_sc0014003.1_g000014 Rmu_sc0014698.1_g000001 Rmu_sc0015740.1_g000001 Rmu_sc0016429.1_g000003 Rmu_sc0018885.1_g000001 Rmu_sc0020345.1_g000001 Rmu_sc0027791.1_g000001 Rmu_sc0037325.1_g000001 Rmu_ssc0000010.1_g000024 Rmu_ssc0000010.1_g000025 Rmu_ssc0000083.1_g000021 Rmu_ssc0000340.1_g000002 Rmu_ssc0000386.1_g000002 Rmu_ssc0000386.1_g000024 Rmu_ssc0000386.1_g000025 Rmu_ssc0000386.1_g000034 Rmu_ssc0000386.1_g000037 Rmu_ssc0000477.1_g000001
rosa_roxburghii Rroxscaffold_161G00448010 Rroxscaffold_164G00436080 Rroxscaffold_1G00024500 Rroxscaffold_2G00124290 Rroxscaffold_3G00222940 Rroxscaffold_3G00227440 Rroxscaffold_4G00304810 Rroxscaffold_4G00330180 Rroxscaffold_4G00330200 Rroxscaffold_5G00356620 Rroxscaffold_5G00358170 Rroxscaffold_5G00360880 Rroxscaffold_5G00361220 Rroxscaffold_5G00361950 Rroxscaffold_5G00361960 Rroxscaffold_5G00361990 Rroxscaffold_5G00362370 Rroxscaffold_5G00364540 Rroxscaffold_5G00364550 Rroxscaffold_5G00364580 Rroxscaffold_5G00364600 Rroxscaffold_6G00393290 Rroxscaffold_6G00412680 Rroxscaffold_6G00412790 Rroxscaffold_6G00413470 Rroxscaffold_6G00413720 Rroxscaffold_6G00416070 Rroxscaffold_7G00205400
rosa_rugosa Rorug01G0017300 Rorug01G0017400 Rorug01G0018000 Rorug01G0018100 Rorug01G0211500 Rorug02G0638200 Rorug03G0070000 Rorug03G0071200 Rorug03G0081000 Rorug03G0086500 Rorug03G0089300 Rorug03G0095300 Rorug03G0096000 Rorug03G0096000 Rorug04G0055000 Rorug04G0078300 Rorug04G0104100.1 Rorug04G0113800 Rorug04G0126700 Rorug04G0128000 Rorug04G0145900 Rorug04G0148700 Rorug04G0149100 Rorug04G0149100 Rorug04G0149200 Rorug04G0149300 Rorug04G0154900 Rorug04G0180400 Rorug04G0180500 Rorug04G0180700 Rorug04G0180800 Rorug04G0401500 Rorug04G0402100 Rorug05G0288600 Rorug05G0334100 Rorug07G0176400
rosa_samantha Rh1DG043200 Rh1DG043500 Rh1DG043900 Rh1DG222800 Rh3CG039900 Rh3CG156200 Rh3CG328500 Rh3CG328800 Rh3DG165000 Rh4AG208400 Rh4BG205600 Rh4BG213900 Rh4BG243900 Rh4CG198800 Rh4DG168600 Rh4DG180100 Rh4DG180300 Rh4DG180600 Rh4DG181200 Rh4DG181600 Rh4DG181700 Rh4DG183700 Rh4DG184000 Rh4DG184400 Rh4DG184700 Rh4DG206100 Rh4DG206200 Rh4DG206300 Rh4DG215600 Rh4DG238700 Rh4DG238900 Rh5DG390300
rosa_wichuraiana Rw0G005050 Rw0G009260 Rw0G009280 Rw0G015600 Rw0G023570 Rw1G002140 Rw1G002170 Rw1G002210 Rw1G002240 Rw1G019500 Rw2G015490 Rw3G003020 Rw3G010900 Rw3G012030 Rw3G012790 Rw3G013050 Rw3G013540 Rw3G013640 Rw3G013650 Rw3G026050 Rw3G026070 Rw4G015740 Rw4G015790 Rw4G015910 Rw4G015930 Rw4G015950 Rw4G017900 Rw4G017930 Rw4G018440 Rw4G018450 Rw4G018530 Rw4G020720 Rw4G020760 Rw5G019250 Rw5G034370 Rw7G018700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1473, 2942
AasI GACNNNNNNGTC 1 cut(s) 2667
AatII GACGTC 1 cut(s) 3767
Acc16I TGCGCA 2 cut(s) 2773, 2930
AccB1I GGYRCC 1 cut(s) 1958
AccB7I CCANNNNNTGG 1 cut(s) 577
AccBSI CCGCTC 3 cut(s) 62, 1551, 3978
AccI GTMKAC 3 cut(s) 1120, 2071, 3580
AccII CGCG 2 cut(s) 163, 3971
AccIII TCCGGA 1 cut(s) 2674
AciI CCGC 9 cut(s) 60, 161, 773, 1549, 2913, 3781, 3969, 3971, 3978
AclI AACGTT 1 cut(s) 3101
AclWI GGATC 1 cut(s) 437
AcoI YGGCCR 2 cut(s) 600, 3722
AcsI RAATTY 6 cut(s) 8, 1268, 1307, 1618, 2139, 2793
AcuI CTGAAG 3 cut(s) 1730, 2765, 3665
AcvI CACGTG 1 cut(s) 2506
AcyI GRCGYC 1 cut(s) 3764
AfaI GTAC 4 cut(s) 2106, 2646, 3337, 3439
AfiI CCNNNNNNNGG 8 cut(s) 271, 577, 984, 2255, 2909, 3188, 3415, 3780
AflIII ACRYGT 5 cut(s) 1609, 1816, 2278, 3575, 3610
AhdI GACNNNNNGTC 1 cut(s) 3642
AhlI ACTAGT 1 cut(s) 2666
AjiI CACGTC 1 cut(s) 2452
AjnI CCWGG 1 cut(s) 3138
AjuI GAANNNNNNNTTGG 2 cut(s) 881, 913
AloI GAACNNNNNNTCC 2 cut(s) 302, 334
Alw21I GWGCWC 3 cut(s) 126, 1160, 2536
AlwI GGATC 1 cut(s) 437
AlwNI CAGNNNCTG 1 cut(s) 2788
Aor13HI TCCGGA 1 cut(s) 2674
AoxI GGCC 8 cut(s) 600, 1916, 2257, 3190, 3241, 3722, 3979, 3989
ApeKI GCWGC 9 cut(s) 109, 770, 927, 2500, 3021, 3153, 3214, 3261, 3264
ApoI RAATTY 6 cut(s) 8, 1268, 1307, 1618, 2139, 2793
ArsI GACNNNNNNTTYG 8 cut(s) 3020, 3052, 3152, 3184, 3201, 3233, 3719, 3751
Asp700I GAANNNNTTC 3 cut(s) 978, 2244, 3750
AspA2I CCTAGG 2 cut(s) 983, 1919
AspLEI GCGC 2 cut(s) 2774, 2931
AspS9I GGNCC 4 cut(s) 1916, 2257, 3190, 3980
AsuC2I CCSGG 1 cut(s) 3674
AsuHPI GGTGA 6 cut(s) 208, 1367, 1490, 2578, 3610, 3904
AvrII CCTAGG 2 cut(s) 983, 1919
AxyI CCTNAGG 1 cut(s) 3303
BaeGI GKGCMC 1 cut(s) 3302
BalI TGGCCA 1 cut(s) 602
BanI GGYRCC 1 cut(s) 1958
BanII GRGCYC 1 cut(s) 28
BbrPI CACGTG 1 cut(s) 2506
BbsI GAAGAC 3 cut(s) 216, 1461, 2663
Bbv12I GWGCWC 3 cut(s) 126, 1160, 2536
BbvI GCAGC 9 cut(s) 96, 757, 939, 2487, 3008, 3140, 3226, 3248, 3251
BceAI ACGGC 1 cut(s) 3409
BcgI CGANNNNNNTGC 2 cut(s) 1284, 1318
BciT130I CCWGG 1 cut(s) 3140
BclI TGATCA 4 cut(s) 1803, 2338, 3448, 4024
BcnI CCSGG 1 cut(s) 3674
BcuI ACTAGT 1 cut(s) 2666
BfmI CTRYAG 2 cut(s) 2595, 3212
BglII AGATCT 1 cut(s) 1601
BlnI CCTAGG 2 cut(s) 983, 1919
BlpI GCTNAGC 2 cut(s) 38, 219
Bme1390I CCNGG 2 cut(s) 3140, 3674
BmeRI GACNNNNNGTC 1 cut(s) 3642
BmgBI CACGTC 1 cut(s) 2452
BmgT120I GGNCC 4 cut(s) 1916, 2257, 3190, 3980
BmiI GGNNCC 1 cut(s) 1960
BmrFI CCNGG 2 cut(s) 3140, 3674
BmrI ACTGGG 3 cut(s) 1923, 2532, 3579
BmuI ACTGGG 3 cut(s) 1923, 2532, 3579
BpiI GAAGAC 3 cut(s) 216, 1461, 2663
BplI GAGNNNNNCTC 2 cut(s) 2518, 2550
BpmI CTGGAG 2 cut(s) 2000, 3095
Bpu10I CCTNAGC 1 cut(s) 2904
Bpu1102I GCTNAGC 2 cut(s) 38, 219
BpuMI CCSGG 1 cut(s) 3674
BsaAI YACGTR 4 cut(s) 1610, 2506, 3613, 3932
BsaHI GRCGYC 1 cut(s) 3764
BsaI GGTCTC 1 cut(s) 2921
BsaJI CCNNGG 7 cut(s) 384, 457, 983, 1563, 1919, 2755, 3969
BsaWI WCCGGW 1 cut(s) 2674
BsaXI ACNNNNNCTCC 2 cut(s) 168, 198
Bsc4I CCNNNNNNNGG 8 cut(s) 271, 577, 984, 2255, 2909, 3188, 3415, 3780
Bse1I ACTGG 8 cut(s) 1049, 1918, 2063, 2538, 2964, 3044, 3078, 3585
Bse21I CCTNAGG 1 cut(s) 3303
Bse3DI GCAATG 3 cut(s) 1177, 2013, 3603
BseAI TCCGGA 1 cut(s) 2674
BseBI CCWGG 1 cut(s) 3140
BseDI CCNNGG 7 cut(s) 384, 457, 983, 1563, 1919, 2755, 3969
BseLI CCNNNNNNNGG 8 cut(s) 271, 577, 984, 2255, 2909, 3188, 3415, 3780
BseMI GCAATG 3 cut(s) 1177, 2013, 3603
BseNI ACTGG 8 cut(s) 1049, 1918, 2063, 2538, 2964, 3044, 3078, 3585
BseRI GAGGAG 3 cut(s) 2510, 2589, 3488
BseSI GKGCMC 1 cut(s) 3302
BseXI GCAGC 9 cut(s) 96, 757, 939, 2487, 3008, 3140, 3226, 3248, 3251
BsgI GTGCAG 5 cut(s) 326, 2486, 2974, 3040, 3106
Bsh1236I CGCG 2 cut(s) 163, 3971
BshFI GGCC 8 cut(s) 602, 1918, 2259, 3192, 3243, 3724, 3981, 3991
BshNI GGYRCC 1 cut(s) 1958
BsiHKAI GWGCWC 3 cut(s) 126, 1160, 2536
BsiSI CCGG 3 cut(s) 265, 2675, 3674
BslFI GGGAC 5 cut(s) 539, 2462, 2673, 2695, 3930
BslI CCNNNNNNNGG 8 cut(s) 271, 577, 984, 2255, 2909, 3188, 3415, 3780
BsmBI CGTCTC 2 cut(s) 3469, 3629
BsmFI GGGAC 5 cut(s) 539, 2462, 2673, 2695, 3930
BsmI GAATGC 2 cut(s) 2017, 2419
BsnI GGCC 8 cut(s) 602, 1918, 2259, 3192, 3243, 3724, 3981, 3991
Bso31I GGTCTC 1 cut(s) 2921
Bsp1286I GDGCHC 5 cut(s) 28, 126, 1160, 2536, 3302
Bsp13I TCCGGA 1 cut(s) 2674
Bsp1720I GCTNAGC 2 cut(s) 38, 219
Bsp19I CCATGG 2 cut(s) 457, 2755
BspACI CCGC 9 cut(s) 60, 161, 773, 1549, 2913, 3781, 3969, 3971, 3978
BspANI GGCC 8 cut(s) 602, 1918, 2259, 3192, 3243, 3724, 3981, 3991
BspEI TCCGGA 1 cut(s) 2674
BspFNI CGCG 2 cut(s) 163, 3971
BspHI TCATGA 1 cut(s) 655
BspLI GGNNCC 1 cut(s) 1960
BspMAI CTGCAG 1 cut(s) 3216
BspPI GGATC 1 cut(s) 437
BspQI GCTCTTC 1 cut(s) 3684
BspT107I GGYRCC 1 cut(s) 1958
BspTNI GGTCTC 1 cut(s) 2921
BsrBI CCGCTC 3 cut(s) 62, 1551, 3978
BsrDI GCAATG 3 cut(s) 1177, 2013, 3603
BsrI ACTGG 8 cut(s) 1049, 1918, 2063, 2538, 2964, 3044, 3078, 3585
BssECI CCNNGG 7 cut(s) 384, 457, 983, 1563, 1919, 2755, 3969
BssNAI GTATAC 1 cut(s) 1121
BssNI GRCGYC 1 cut(s) 3764
BssT1I CCWWGG 6 cut(s) 384, 457, 983, 1563, 1919, 2755
Bst1107I GTATAC 1 cut(s) 1121
Bst2UI CCWGG 1 cut(s) 3140
Bst4CI ACNGT 6 cut(s) 970, 1324, 2729, 3329, 3492, 3511
BstACI GRCGYC 1 cut(s) 3764
BstAPI GCANNNNNTGC 2 cut(s) 2012, 2235
BstBAI YACGTR 4 cut(s) 1610, 2506, 3613, 3932
BstC8I GCNNGC 3 cut(s) 225, 2193, 2197
BstDSI CCRYGG 3 cut(s) 457, 2755, 3969
BstENI CCTNNNNNAGG 1 cut(s) 2907
BstFNI CGCG 2 cut(s) 163, 3971
BstHHI GCGC 2 cut(s) 2774, 2931
BstMWI GCNNNNNNNGC 9 cut(s) 56, 224, 265, 274, 2012, 2235, 2506, 3220, 3963
BstNI CCWGG 1 cut(s) 3140
BstNSI RCATGY 8 cut(s) 227, 1491, 1820, 1838, 1988, 2282, 2299, 3579
BstSCI CCNGG 2 cut(s) 3138, 3672
BstSFI CTRYAG 2 cut(s) 2595, 3212
BstSLI GKGCMC 1 cut(s) 3302
BstSNI TACGTA 1 cut(s) 3932
BstUI CGCG 2 cut(s) 163, 3971
BstV1I GCAGC 9 cut(s) 96, 757, 939, 2487, 3008, 3140, 3226, 3248, 3251
BstV2I GAAGAC 3 cut(s) 216, 1461, 2663
BstX2I RGATCY 2 cut(s) 442, 1601
BstYI RGATCY 2 cut(s) 442, 1601
BstZ17I GTATAC 1 cut(s) 1121
Bsu36I CCTNAGG 1 cut(s) 3303
BsuRI GGCC 8 cut(s) 602, 1918, 2259, 3192, 3243, 3724, 3981, 3991
BtgI CCRYGG 3 cut(s) 457, 2755, 3969
BtrI CACGTC 1 cut(s) 2452
BtsI GCAGTG 2 cut(s) 955, 3230
BtsIMutI CAGTG 4 cut(s) 955, 1320, 3230, 3592
Cac8I GCNNGC 3 cut(s) 225, 2193, 2197
CaiI CAGNNNCTG 1 cut(s) 2788
CciI TCATGA 1 cut(s) 655
CfoI GCGC 2 cut(s) 2774, 2931
Cfr13I GGNCC 4 cut(s) 1916, 2257, 3190, 3980
Cfr42I CCGCGG 1 cut(s) 3972
Csp6I GTAC 4 cut(s) 2105, 2645, 3336, 3438
CspCI CAANNNNNGTGG 4 cut(s) 951, 986, 1093, 1128
CviQI GTAC 4 cut(s) 2105, 2645, 3336, 3438
DraI TTTAAA 2 cut(s) 1245, 1756
DrdI GACNNNNNNGTC 1 cut(s) 2667
DriI GACNNNNNGTC 1 cut(s) 3642
DseDI GACNNNNNNGTC 1 cut(s) 2667
EaeI YGGCCR 2 cut(s) 600, 3722
Eam1105I GACNNNNNGTC 1 cut(s) 3642
Eco105I TACGTA 1 cut(s) 3932
Eco130I CCWWGG 6 cut(s) 384, 457, 983, 1563, 1919, 2755
Eco147I AGGCCT 1 cut(s) 3243
Eco24I GRGCYC 1 cut(s) 28
Eco31I GGTCTC 1 cut(s) 2921
Eco57I CTGAAG 3 cut(s) 1730, 2765, 3665
Eco72I CACGTG 1 cut(s) 2506
Eco81I CCTNAGG 1 cut(s) 3303
EcoNI CCTNNNNNAGG 1 cut(s) 2907
EcoO109I RGGNCCY 1 cut(s) 3190
EcoRI GAATTC 1 cut(s) 1307
EcoRII CCWGG 1 cut(s) 3138
EcoT14I CCWWGG 6 cut(s) 384, 457, 983, 1563, 1919, 2755
EcoT38I GRGCYC 1 cut(s) 28
ErhI CCWWGG 6 cut(s) 384, 457, 983, 1563, 1919, 2755
Esp3I CGTCTC 2 cut(s) 3469, 3629
FalI AAGNNNNNCTT 4 cut(s) 1325, 1357, 1356, 1388
FaqI GGGAC 5 cut(s) 539, 2462, 2673, 2695, 3930
FbaI TGATCA 4 cut(s) 1803, 2338, 3448, 4024
FblI GTMKAC 3 cut(s) 1120, 2071, 3580
FriOI GRGCYC 1 cut(s) 28
FspI TGCGCA 2 cut(s) 2773, 2930
GlaI GCGC 2 cut(s) 2773, 2930
GsuI CTGGAG 2 cut(s) 2000, 3095
HaeIII GGCC 8 cut(s) 602, 1918, 2259, 3192, 3243, 3724, 3981, 3991
HapII CCGG 3 cut(s) 265, 2675, 3674
HhaI GCGC 2 cut(s) 2774, 2931
Hin1I GRCGYC 1 cut(s) 3764
Hin6I GCGC 2 cut(s) 2772, 2929
HinP1I GCGC 2 cut(s) 2772, 2929
HincII GTYRAC 4 cut(s) 1668, 1733, 2049, 2089
HindII GTYRAC 4 cut(s) 1668, 1733, 2049, 2089
HindIII AAGCTT 3 cut(s) 203, 2063, 3349
HpaI GTTAAC 1 cut(s) 2049
HpaII CCGG 3 cut(s) 265, 2675, 3674
HphI GGTGA 6 cut(s) 208, 1367, 1490, 2578, 3610, 3904
Hpy99I CGWCG 2 cut(s) 3395, 3414
HpyCH4III ACNGT 6 cut(s) 970, 1324, 2729, 3329, 3492, 3511
HpyF10VI GCNNNNNNNGC 9 cut(s) 56, 224, 265, 274, 2012, 2235, 2506, 3220, 3963
Hsp92I GRCGYC 1 cut(s) 3764
HspAI GCGC 2 cut(s) 2772, 2929
Kpn2I TCCGGA 1 cut(s) 2674
Ksp22I TGATCA 4 cut(s) 1803, 2338, 3448, 4024
KspAI GTTAAC 1 cut(s) 2049
KspI CCGCGG 1 cut(s) 3972
LguI GCTCTTC 1 cut(s) 3684
LmnI GCTCC 3 cut(s) 1981, 2497, 2539
Lsp1109I GCAGC 9 cut(s) 96, 757, 939, 2487, 3008, 3140, 3226, 3248, 3251
MaeIII GTNAC 6 cut(s) 797, 937, 950, 2363, 2784, 3307
MbiI CCGCTC 3 cut(s) 62, 1551, 3978
MfeI CAATTG 6 cut(s) 1086, 1656, 2522, 3005, 3632, 3940
MflI RGATCY 2 cut(s) 442, 1601
MhlI GDGCHC 5 cut(s) 28, 126, 1160, 2536, 3302
MlsI TGGCCA 1 cut(s) 602
MluNI TGGCCA 1 cut(s) 602
MlyI GAGTC 5 cut(s) 125, 937, 2710, 2894, 3380
MmeI TCCRAC 4 cut(s) 470, 1033, 1372, 2838
Mox20I TGGCCA 1 cut(s) 602
MroI TCCGGA 1 cut(s) 2674
MroXI GAANNNNTTC 3 cut(s) 978, 2244, 3750
MscI TGGCCA 1 cut(s) 602
MslI CAYNNNNRTG 2 cut(s) 228, 1325
Msp20I TGGCCA 1 cut(s) 602
MspA1I CMGCKG 2 cut(s) 3021, 3971
MspI CCGG 3 cut(s) 265, 2675, 3674
MspR9I CCNGG 2 cut(s) 3140, 3674
MunI CAATTG 6 cut(s) 1086, 1656, 2522, 3005, 3632, 3940
Mva1269I GAATGC 2 cut(s) 2017, 2419
MvaI CCWGG 1 cut(s) 3140
MvnI CGCG 2 cut(s) 163, 3971
MwoI GCNNNNNNNGC 9 cut(s) 56, 224, 265, 274, 2012, 2235, 2506, 3220, 3963
NciI CCSGG 1 cut(s) 3674
NcoI CCATGG 2 cut(s) 457, 2755
NlaIV GGNNCC 1 cut(s) 1960
NmeAIII GCCGAG 2 cut(s) 1674, 2443
NmuCI GTSAC 3 cut(s) 937, 950, 2363
NsbI TGCGCA 2 cut(s) 2773, 2930
NspI RCATGY 8 cut(s) 227, 1491, 1820, 1838, 1988, 2282, 2299, 3579
PaeI GCATGC 1 cut(s) 227
PagI TCATGA 1 cut(s) 655
PceI AGGCCT 1 cut(s) 3243
PciI ACATGT 3 cut(s) 1816, 2278, 3575
PciSI GCTCTTC 1 cut(s) 3684
PctI GAATGC 2 cut(s) 2017, 2419
PdmI GAANNNNTTC 3 cut(s) 978, 2244, 3750
PfeI GAWTC 9 cut(s) 87, 659, 1230, 1873, 2149, 2422, 3665, 3788, 3871
PflFI GACNNNGTC 2 cut(s) 1343, 3492
PflMI CCANNNNNTGG 1 cut(s) 577
PleI GAGTC 5 cut(s) 124, 937, 2709, 2893, 3379
PmaCI CACGTG 1 cut(s) 2506
PmlI CACGTG 1 cut(s) 2506
PpsI GAGTC 5 cut(s) 124, 937, 2709, 2893, 3379
Ppu21I YACGTR 4 cut(s) 1610, 2506, 3613, 3932
PscI ACATGT 3 cut(s) 1816, 2278, 3575
PsiI TTATAA 2 cut(s) 1473, 2942
Psp1406I AACGTT 1 cut(s) 3101
Psp6I CCWGG 1 cut(s) 3138
PspCI CACGTG 1 cut(s) 2506
PspGI CCWGG 1 cut(s) 3138
PspN4I GGNNCC 1 cut(s) 1960
PspPI GGNCC 4 cut(s) 1916, 2257, 3190, 3980
PstI CTGCAG 1 cut(s) 3216
PstNI CAGNNNCTG 1 cut(s) 2788
PsuI RGATCY 2 cut(s) 442, 1601
PsyI GACNNNGTC 2 cut(s) 1343, 3492
PvuII CAGCTG 1 cut(s) 3021
RsaI GTAC 4 cut(s) 2106, 2646, 3337, 3439
RsaNI GTAC 4 cut(s) 2105, 2645, 3336, 3438
RseI CAYNNNNRTG 2 cut(s) 228, 1325
SacII CCGCGG 1 cut(s) 3972
SapI GCTCTTC 1 cut(s) 3684
Sau96I GGNCC 4 cut(s) 1916, 2257, 3190, 3980
SchI GAGTC 5 cut(s) 125, 937, 2710, 2894, 3380
ScrFI CCNGG 2 cut(s) 3140, 3674
SduI GDGCHC 5 cut(s) 28, 126, 1160, 2536, 3302
SfcI CTRYAG 2 cut(s) 2595, 3212
Sfr303I CCGCGG 1 cut(s) 3972
SgrBI CCGCGG 1 cut(s) 3972
SmiMI CAYNNNNRTG 2 cut(s) 228, 1325
SnaBI TACGTA 1 cut(s) 3932
SpeI ACTAGT 1 cut(s) 2666
SphI GCATGC 1 cut(s) 227
SseBI AGGCCT 1 cut(s) 3243
SsiI CCGC 9 cut(s) 60, 161, 773, 1549, 2913, 3781, 3969, 3971, 3978
SspI AATATT 3 cut(s) 1421, 2253, 2605
StuI AGGCCT 1 cut(s) 3243
StyD4I CCNGG 2 cut(s) 3138, 3672
StyI CCWWGG 6 cut(s) 384, 457, 983, 1563, 1919, 2755
TaaI ACNGT 6 cut(s) 970, 1324, 2729, 3329, 3492, 3511
TaqI TCGA 4 cut(s) 72, 2055, 2655, 3412
TaqII GACCGA 1 cut(s) 3788
TatI WGTACW 4 cut(s) 2104, 2644, 3335, 3437
TauI GCSGC 3 cut(s) 62, 1551, 3981
TfiI GAWTC 9 cut(s) 87, 659, 1230, 1873, 2149, 2422, 3665, 3788, 3871
TscAI CASTG 4 cut(s) 955, 1327, 3230, 3592
TseFI GTSAC 3 cut(s) 937, 950, 2363
TseI GCWGC 9 cut(s) 109, 770, 927, 2500, 3021, 3153, 3214, 3261, 3264
Tsp45I GTSAC 3 cut(s) 937, 950, 2363
TspGWI ACGGA 6 cut(s) 583, 3097, 3398, 3530, 3851, 3880
TspRI CASTG 4 cut(s) 955, 1327, 3230, 3592
Tth111I GACNNNGTC 2 cut(s) 1343, 3492
Van91I CCANNNNNTGG 1 cut(s) 577
XagI CCTNNNNNAGG 1 cut(s) 2907
XapI RAATTY 6 cut(s) 8, 1268, 1307, 1618, 2139, 2793
XbaI TCTAGA 2 cut(s) 2881, 3502
XceI RCATGY 8 cut(s) 227, 1491, 1820, 1838, 1988, 2282, 2299, 3579
XcmI CCANNNNNNNNNTGG 3 cut(s) 610, 1390, 1975
XmaJI CCTAGG 2 cut(s) 983, 1919
XmiI GTMKAC 3 cut(s) 1120, 2071, 3580
XmnI GAANNNNTTC 3 cut(s) 978, 2244, 3750
ZraI GACGTC 1 cut(s) 3765
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.