RchiOBHm_Chr3g0468571

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000029
Physical Location & Seq
Reverse (-)
14548320 .. 14557279
8960 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43446

Sequence Viewer

Length: 3729 bp
ATGGCAGAATTTCTGCTCAATTTTGCTGCTGAGGGAATACTGACCAAGGTGACTACGCTTGCTGCTCAAGAATTCACTCTCGTGTTGGGTTTCAAAGGAGATCTAGCACAACTGCGTGACTCGTTCCTCAAGATTCAAGCTATGCTAAGAGATGTCGAGCATTCACAAGTTCGCGGGGAGACTGTGGAATTGTGGGTGAAAGATCTTGAAGACATAGCTCAAGAAGCCGATGATGTCTTGGATGAAATTGGGTATGAAGTTCTCCGACGCAAAATAGAACTCCGTAACCATATGAAGAAAAAGGTCAAAAATTTCTTTTCACACAACAATCCGGTTGCATTTCGCTTTAAAATGACACATAAAATTAAAAAGATCAACAAATCTTTAGTGAATTTGAATAATGATGCAGCCTCTATTGGGTTGGTTGCTAGGACATTAGCAAATGCAACCTCTCAAGATGTTGAAGTACTTGACAGGGAAACCGTCTCCAGCTTTGATAGCAATGAGAAGCTCATCATTGGAAGGGAGGAGGTCGTGTCAGATGTAGTCAAAACATTGATCAAGTCAAACTATAATGAAGAAAATTATCTTCCGGTCCTGGCTATTGTGGGAATGCCTGGTCTAGGTAAGACAACTCTGGCTAAATCAATCTATCATGAAGCAGAGATTGATAGTCACTTCCATAAAAAAGTATGGGTGTGTGTATCCACCCCGTTTGAAGTCAAGACGATCTTAAGGGGAATTTTGGAATCTCTAGAACCAGAGAAAGCCACAATACATAGCAAGGATGCGATTTGTAAATTCATTCGAGAAAAGCTGGAAAATAAAAGATACCTTCTAGTGCTTGATGATGTTTGGAGAGAAGATCCAGAGAAATGGAAAGAATTGAGGAGTTGTTTGTTAACATTTAAAGACACTCGAGGAAGCAGCATCATTGTCACTACTCGTAGTGACGAAGTTGCAAAAGTCATGGAGACCCTTCCTAGGCCTGATTTGAGAAGACTATCAGATGACGAATGTTGGCTTATAATCAAGGATAAAGCAATATCAGTTGGGAGTGCTCCTATGTCCAAAGAGCAGGAGACAATTGGTAAAGAGATTGCTAAGAAGTGTGGAGGTTTACCATTAATGGCAAAGGTTTTGGGAGATATGCTGCGCTCTAAAACAAGTGACGAATGGGGATCAATTGTAAACAATAAAATATGGGATTCACTAGAAGGAGAAAAGAGAATTCTTTCAATTTTGAAGTTGAGTTTTGATGAATTGAAACCTCCATCCTTAAAACAATGTTTTGCATATTGCTCGATGTTCTCCAAGGATTTTGATATTGAAAAGGATGACTTGATCCAACTTTGGATGGCTCAAGGATTGCTTCACCCTTGTTCTAACAAAAACCTAGAGATGGAGGAGAGAGGTAATGAATATTTTAAAATCCTATTGGCCAAGTCTTTTTTTCAAGACGTTACAAAGGATTATGGGGGTAATGTTACCAAATGTAAGATGCACGATCTTTTGCCAATTTCAATTGGGAAGTTGAAACACTTGAGGTATTTGAATGTTTTGAAAACAAGAATCAAAACATTTCCCAAATCAATCGGCCAGCTTTATAACCTACAAACATTGAAAATACCTTATCAGCTTGAAGAGTTTCCAGGGGAAATTGCAAATTTGATCAACTTGCGGCACATTTATTTTGGTAGATATATGAAAGTTCCAAGTGGGATACTGGGACGATTCACTAATCTCCGGTCATTACCTTTTCTCAAGGTGGGTAAAGAAACAGGTCCGAGAATTGAGGAATTGAGTGGTTTAAACCAGTTGCACAACACCTTGTCTATTTGTGGACTCGAAAATGTGGGAGATGGAGAAGAAGTGCAGAAAGCAAACTTAGTAGAGAAGAAACACATACGCAAGTTAATCCTTGGATGGAAGCTAGGTAGGCCAAGCCACAATGTGGAGAATGACGATGATGTACTAGAAGGCCTCCGACCACATTCTAGATTGGAATTTTTGGAGATTCATGAATTCATGGGTGTTAAATTTCCATCATGGTTATTGCTAGCCAACCATTTGAAAGAGATTGAATTATTGGGCTGCAACAAATGTGAAGGAGTCCCAATACTTGGGCATTTAGCCAATCTTAGTTGTGTTAAGATCAAGGGAATGGAGAATCTGACTTGTATAGGATCTGAGTTTTATGGTGATGACCATGTCAACTGTGGAAATGGATCAAGTAAGGAGGCACAGCCTTTGTTCCCTGCTTTGAAAACATTGCATATTGAGGATGCACCGAGCCTGATTGAATGGATGGAAGCGCCAGTAGAGAGAGCAAGTAGGGTGTTTCCTTGCCTCGAGGAGCTGACCCTGTCAGGCTGTACAGAATTGACAAGTGCTCCCAGTCATTTTCCATCTCTCAAGAGGTTGAAAATAGGAGGCATGAAAAGCGGAGGCATGCCAATAGCAAGTATTCTAAGCAATCAACTCACCACTCTCACGCATCTCACGGTATCGGGTGTGAGTGGACTGACTTGTCTGCCGGAAGGGATGTTCGAAAACAACAAGAATCTTGCACATTTGGATATAGAGTTTTGTCCGGAATTAATTTGTACTTCTCCCCAATCACAAGGATCTGAGTACCGCTGTGCATCTCCTTCATATTTGCGGCTATTTTATTGTGAGAATTTGAGATATTTACCTGATGGGATACTCACACCTTCTCTTAAAGAGCTGCGGTTGTGCCATTGTGACAATTTAGAGTACATCCCAGATGCTACACACGGTGGTCTCACATCCCTTGAAACATTGAATGTGTGCTGGTGCTATAAAATAACTTCCATTCCATTTTCACAAGGCCTCCCATCTCTTGGTGAATTATATATATATGACTGTCCCGAATTATCAAGTCTACCGGGTGGGCTGGAATTTTGTACCTCTATTCGGAGTTTGACAGTACAATTGTGCCCCAAGGTACCATCCATTTCAATCGAAAGTCTGAGTACATCCCTCCAAGAGTTGTGTGTAAGTAATCTAGACTCTATTCCAATTTCACGAGGAGGCTTCACATCACTCCGTCAATTGACAATCGATGGCCGCGAAGGTGCACAAATTGGGCCAGAATGTTGTGCCTTTCTTCAAAACCTTGTCTCTCTTCAAAATTTGACGATACAAAATTGCCAAAATCAAGAGACTATTCCAATTTCAGACAAGCTCACATCCCTCCGCAGCTTGAACATTTCTTTTTGTGATAAATTAACATGTCTACCGGATGGGTTAGCAGCATCGTCACAGTCCTGCAGCTTCACCCGTTTGAAGAGATTGGCAATTGGTGCTTTCTGCTCGGAGCTCGATGCATTCCCAGCTTTTCAGGCTATACCACAGCTTGAATCATTATGGATCGCCGGGTGGCCTAAGCTCAAGTCTCTGCCTGAACAAATTCAACACTTGCCTTCTTTAAGACATCTGAAAATAGAGACCTTCAGGGGAGTGGAGGATATTCCAGAATGGTTGGGAAACCTTGCATCTCTTGAGCACCTGACTATTTGTTGCTGCGAGAGTCTAGAGTATCTACCTTCTGTGGAAGCTATGCAACGCCTCACCAAATTGAAAGAGATACGCATCGTCTACAGTCCCCTTCTAGAAGAAAGATGCAGGGAGGAGAGCGGCCCAGAGTGGCCTAAGATTCGTCATCTTCCATTCATCCAGATTGGAGATATAAGAATCGAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 ko04014 map03460 map04014
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

1242

Amino Acids

139.77

Weight (kDa)

6.08

Isoelectric Point (pI)

48.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 13 - 100 1.3e-20 Rx N-terminal domain
nSTAND1 PF20703 168 - 388 1e-07 Novel STAND NTPase 1
NB-ARC PF00931 176 - 349 3.5e-36 NB-ARC domain
AAA_22 PF13401 199 - 302 6.1e-07 AAA domain
WHD_DRP PF23559 436 - 505 2.7e-21 Disease resistance protein Winged helix domain
LRR_14 PF23598 508 - 721 3.2e-21 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 598 - 722 2.5e-33 R13L1/DRL21 LRRs
LRR_14 PF23598 965 - 1132 2.2e-06 Leucine-rich repeat region
LRR_14 PF23598 1127 - 1216 1.1e-07 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 1143 - 1202 8.7e-08 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000029)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13530 FvH4_4g18270 FvH4_6g12200 FvH4_6g12460 FvH4_6g12461 FvH4_6g13450 FvH4_6g15090 FvH4_6g15220 FvH4_6g15230 FvH4_6g15250 FvH4_6g15251 FvH4_6g15340 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47980 FvH4_6g47980 FvH4_6g47980 FvH4_6g48170 FvH4_6g48310 FvH4_6g48310 FvH4_6g48850 FvH4_6g48881 FvH4_7g11830
malus_domestica MD02G1059900.v1.1 MD02G1069600.v1.1 MD02G1069700.v1.1 MD02G1070100.v1.1 MD02G1070200.v1.1 MD02G1070300.v1.1 MD02G1070800.v1.1 MD02G1070900.v1.1 MD02G1071200.v1.1 MD02G1071400.v1.1 MD02G1071900.v1.1 MD02G1075200.v1.1 MD03G1048000.v1.1 MD03G1049100.v1.1 MD03G1049200.v1.1 MD03G1052500.v1.1 MD03G1054100.v1.1 MD03G1054300.v1.1 MD03G1054400.v1.1 MD04G1113400.v1.1 MD04G1211100.v1.1 MD04G1211200.v1.1 MD05G1174900.v1.1 MD05G1175000.v1.1 MD05G1175900.v1.1 MD05G1243400.v1.1 MD07G1031500.v1.1 MD07G1031600.v1.1 MD07G1032500.v1.1 MD11G1046800.v1.1 MD11G1046900.v1.1 MD11G1047000.v1.1 MD11G1050400.v1.1 MD11G1050600.v1.1 MD11G1050800.v1.1 MD11G1051100.v1.1 MD11G1051600.v1.1 MD11G1051700.v1.1 MD11G1054600.v1.1 MD11G1055600.v1.1 MD11G1055700.v1.1 MD11G1055800.v1.1 MD11G1056000.v1.1 MD12G1126600.v1.1 MD12G1126700.v1.1 MD12G1126800.v1.1 MD12G1127300.v1.1 MD12G1127600.v1.1 MD12G1127900.v1.1 MD12G1128100.v1.1 MD12G1128300.v1.1 MD15G1261500.v1.1
prunus_persica Prupe.1G010700_v2.0.a1 Prupe.1G010800_v2.0.a1 Prupe.1G011000_v2.0.a1 Prupe.1G159600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163700_v2.0.a1 Prupe.1G163700_v2.0.a1 Prupe.1G163800_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G235500_v2.0.a1 Prupe.2G067400_v2.0.a1 Prupe.2G067500_v2.0.a1 Prupe.2G111700_v2.0.a1 Prupe.2G111800_v2.0.a1 Prupe.3G012000_v2.0.a1 Prupe.6G243400_v2.0.a1 Prupe.6G243500_v2.0.a1 Prupe.6G243600_v2.0.a1 Prupe.6G243700_v2.0.a1 Prupe.6G243800_v2.0.a1 Prupe.6G243900_v2.0.a1
pyrus_communis pycom02g04860 pycom02g04880 pycom02g04890 pycom02g05510 pycom02g05520 pycom02g05600 pycom02g05930 pycom02g06000 pycom02g06010 pycom03g03800 pycom03g03860 pycom03g03880 pycom03g03890 pycom03g03910 pycom03g03920 pycom03g04200 pycom03g04290 pycom03g04300 pycom03g04310 pycom03g04320 pycom03g09260 pycom04g10150 pycom04g10160 pycom04g10170 pycom05g16180 pycom05g16190 pycom05g16240 pycom05g21980 pycom05g21990 pycom07g02280 pycom11g03800 pycom11g03810 pycom11g04080 pycom11g04140 pycom11g04150 pycom11g04160 pycom11g04570 pycom11g04580 pycom11g04590 pycom11g04610 pycom12g12470 pycom12g12490 pycom13g22050
rosa_chinensis RchiOBHm_Chr1g0317761 RchiOBHm_Chr1g0317821 RchiOBHm_Chr1g0317831 RchiOBHm_Chr1g0317871 RchiOBHm_Chr1g0350501 RchiOBHm_Chr2g0107631 RchiOBHm_Chr3g0452091 RchiOBHm_Chr3g0464001 RchiOBHm_Chr3g0464281 RchiOBHm_Chr3g0466331 RchiOBHm_Chr3g0467341 RchiOBHm_Chr3g0467381 RchiOBHm_Chr3g0467731 RchiOBHm_Chr3g0468291 RchiOBHm_Chr3g0468321 RchiOBHm_Chr3g0468341 RchiOBHm_Chr3g0468391 RchiOBHm_Chr3g0468411 RchiOBHm_Chr3g0468571 RchiOBHm_Chr3g0468591 RchiOBHm_Chr3g0490721 RchiOBHm_Chr3g0490751 RchiOBHm_Chr3g0490761 RchiOBHm_Chr3g0490771 RchiOBHm_Chr3g0490951 RchiOBHm_Chr3g0491001 RchiOBHm_Chr3g0491011 RchiOBHm_Chr4g0412461 RchiOBHm_Chr4g0414161 RchiOBHm_Chr4g0414181 RchiOBHm_Chr4g0414191 RchiOBHm_Chr4g0414281 RchiOBHm_Chr4g0414441 RchiOBHm_Chr4g0414521 RchiOBHm_Chr4g0414531 RchiOBHm_Chr4g0417011 RchiOBHm_Chr4g0417021 RchiOBHm_Chr4g0417041 RchiOBHm_Chr4g0417071 RchiOBHm_Chr4g0417101 RchiOBHm_Chr4g0417531 RchiOBHm_Chr4g0417641 RchiOBHm_Chr4g0417651 RchiOBHm_Chr4g0417701 RchiOBHm_Chr4g0417731 RchiOBHm_Chr4g0417741 RchiOBHm_Chr4g0417781 RchiOBHm_Chr4g0418751 RchiOBHm_Chr4g0418791 RchiOBHm_Chr4g0418861 RchiOBHm_Chr4g0418881 RchiOBHm_Chr4g0418901 RchiOBHm_Chr4g0422451 RchiOBHm_Chr4g0422461 RchiOBHm_Chr4g0422471 RchiOBHm_Chr4g0422541 RchiOBHm_Chr4g0422561 RchiOBHm_Chr4g0422591 RchiOBHm_Chr4g0422651 RchiOBHm_Chr4g0422661 RchiOBHm_Chr5g0003251 RchiOBHm_Chr5g0003261 RchiOBHm_Chr5g0055871 RchiOBHm_Chr7g0204701 RchiOBHm_Chr7g0204741
rosa_laevigata RLG00000007607 RLG00000007932 RLG00000017606 RLG00000024418 RLG00000025629 RLG00000030586
rosa_multiflora Rmu_co7959167.1_g000001 Rmu_co8021330.1_g000001 Rmu_co8132128.1_g000001 Rmu_co8224744.1_g000001 Rmu_co8281865.1_g000001 Rmu_co8298487.1_g000001 Rmu_co8319035.1_g000001 Rmu_co8380035.1_g000001 Rmu_co8385371.1_g000001 Rmu_co8398173.1_g000001 Rmu_co8423363.1_g000001 Rmu_co8438275.1_g000001 Rmu_co8474729.1_g000001 Rmu_sc0000057.1_g000008 Rmu_sc0000350.1_g000023 Rmu_sc0000480.1_g000005 Rmu_sc0000654.1_g000021 Rmu_sc0000654.1_g000029 Rmu_sc0000654.1_g000032 Rmu_sc0000654.1_g000041 Rmu_sc0000654.1_g000045 Rmu_sc0000772.1_g000002 Rmu_sc0000772.1_g000041 Rmu_sc0000808.1_g000040 Rmu_sc0000830.1_g000062 Rmu_sc0000830.1_g000065 Rmu_sc0000830.1_g000072 Rmu_sc0000830.1_g000073 Rmu_sc0000935.1_g000020 Rmu_sc0000935.1_g000024 Rmu_sc0000935.1_g000026 Rmu_sc0000935.1_g000027 Rmu_sc0000935.1_g000031 Rmu_sc0000935.1_g000033 Rmu_sc0000962.1_g000033 Rmu_sc0000962.1_g000036 Rmu_sc0000962.1_g000063 Rmu_sc0000962.1_g000064 Rmu_sc0000962.1_g000065 Rmu_sc0001029.1_g000007 Rmu_sc0001063.1_g000014 Rmu_sc0001149.1_g000010 Rmu_sc0001149.1_g000011 Rmu_sc0001358.1_g000009 Rmu_sc0001448.1_g000003 Rmu_sc0001448.1_g000004 Rmu_sc0001729.1_g000005 Rmu_sc0001729.1_g000007 Rmu_sc0001729.1_g000020 Rmu_sc0001729.1_g000023 Rmu_sc0001793.1_g000015 Rmu_sc0002494.1_g000018 Rmu_sc0002494.1_g000019 Rmu_sc0002604.1_g000022 Rmu_sc0002922.1_g000011 Rmu_sc0003008.1_g000009 Rmu_sc0003221.1_g000061 Rmu_sc0003221.1_g000062 Rmu_sc0003459.1_g000014 Rmu_sc0003480.1_g000015 Rmu_sc0003541.1_g000016 Rmu_sc0003541.1_g000020 Rmu_sc0004035.1_g000001 Rmu_sc0004035.1_g000005 Rmu_sc0004035.1_g000011 Rmu_sc0004142.1_g000004 Rmu_sc0004142.1_g000010 Rmu_sc0004353.1_g000008 Rmu_sc0004616.1_g000009 Rmu_sc0004616.1_g000010 Rmu_sc0005231.1_g000004 Rmu_sc0006380.1_g000025 Rmu_sc0006492.1_g000010 Rmu_sc0006895.1_g000001 Rmu_sc0006895.1_g000002 Rmu_sc0006895.1_g000005 Rmu_sc0007034.1_g000004 Rmu_sc0007104.1_g000006 Rmu_sc0008990.1_g000003 Rmu_sc0008990.1_g000004 Rmu_sc0009106.1_g000003 Rmu_sc0009516.1_g000002 Rmu_sc0009516.1_g000003 Rmu_sc0009516.1_g000004 Rmu_sc0009516.1_g000005 Rmu_sc0009645.1_g000001 Rmu_sc0010274.1_g000001 Rmu_sc0010274.1_g000002 Rmu_sc0010419.1_g000003 Rmu_sc0010917.1_g000017 Rmu_sc0011213.1_g000001 Rmu_sc0011228.1_g000007 Rmu_sc0011538.1_g000011 Rmu_sc0011538.1_g000014 Rmu_sc0011538.1_g000015 Rmu_sc0012211.1_g000006 Rmu_sc0012351.1_g000003 Rmu_sc0012351.1_g000005 Rmu_sc0012915.1_g000002 Rmu_sc0013088.1_g000001 Rmu_sc0013459.1_g000001 Rmu_sc0013765.1_g000004 Rmu_sc0013765.1_g000005 Rmu_sc0014003.1_g000012 Rmu_sc0014003.1_g000014 Rmu_sc0014698.1_g000001 Rmu_sc0015740.1_g000001 Rmu_sc0016429.1_g000003 Rmu_sc0018885.1_g000001 Rmu_sc0020345.1_g000001 Rmu_sc0027791.1_g000001 Rmu_sc0037325.1_g000001 Rmu_ssc0000010.1_g000024 Rmu_ssc0000010.1_g000025 Rmu_ssc0000083.1_g000021 Rmu_ssc0000340.1_g000002 Rmu_ssc0000386.1_g000002 Rmu_ssc0000386.1_g000024 Rmu_ssc0000386.1_g000025 Rmu_ssc0000386.1_g000034 Rmu_ssc0000386.1_g000037 Rmu_ssc0000477.1_g000001
rosa_roxburghii Rroxscaffold_161G00448010 Rroxscaffold_164G00436080 Rroxscaffold_1G00024500 Rroxscaffold_2G00124290 Rroxscaffold_3G00222940 Rroxscaffold_3G00227440 Rroxscaffold_4G00304810 Rroxscaffold_4G00330180 Rroxscaffold_4G00330200 Rroxscaffold_5G00356620 Rroxscaffold_5G00358170 Rroxscaffold_5G00360880 Rroxscaffold_5G00361220 Rroxscaffold_5G00361950 Rroxscaffold_5G00361960 Rroxscaffold_5G00361990 Rroxscaffold_5G00362370 Rroxscaffold_5G00364540 Rroxscaffold_5G00364550 Rroxscaffold_5G00364580 Rroxscaffold_5G00364600 Rroxscaffold_6G00393290 Rroxscaffold_6G00412680 Rroxscaffold_6G00412790 Rroxscaffold_6G00413470 Rroxscaffold_6G00413720 Rroxscaffold_6G00416070 Rroxscaffold_7G00205400
rosa_rugosa Rorug01G0017300 Rorug01G0017400 Rorug01G0018000 Rorug01G0018100 Rorug01G0211500 Rorug02G0638200 Rorug03G0070000 Rorug03G0071200 Rorug03G0081000 Rorug03G0086500 Rorug03G0089300 Rorug03G0095300 Rorug03G0096000 Rorug03G0096000 Rorug04G0055000 Rorug04G0078300 Rorug04G0104100.1 Rorug04G0113800 Rorug04G0126700 Rorug04G0128000 Rorug04G0145900 Rorug04G0148700 Rorug04G0149100 Rorug04G0149100 Rorug04G0149200 Rorug04G0149300 Rorug04G0154900 Rorug04G0180400 Rorug04G0180500 Rorug04G0180700 Rorug04G0180800 Rorug04G0401500 Rorug04G0402100 Rorug05G0288600 Rorug05G0334100 Rorug07G0176400
rosa_samantha Rh1DG043200 Rh1DG043500 Rh1DG043900 Rh1DG222800 Rh3CG039900 Rh3CG156200 Rh3CG328500 Rh3CG328800 Rh3DG165000 Rh4AG208400 Rh4BG205600 Rh4BG213900 Rh4BG243900 Rh4CG198800 Rh4DG168600 Rh4DG180100 Rh4DG180300 Rh4DG180600 Rh4DG181200 Rh4DG181600 Rh4DG181700 Rh4DG183700 Rh4DG184000 Rh4DG184400 Rh4DG184700 Rh4DG206100 Rh4DG206200 Rh4DG206300 Rh4DG215600 Rh4DG238700 Rh4DG238900 Rh5DG390300
rosa_wichuraiana Rw0G005050 Rw0G009260 Rw0G009280 Rw0G015600 Rw0G023570 Rw1G002140 Rw1G002170 Rw1G002210 Rw1G002240 Rw1G019500 Rw2G015490 Rw3G003020 Rw3G010900 Rw3G012030 Rw3G012790 Rw3G013050 Rw3G013540 Rw3G013640 Rw3G013650 Rw3G026050 Rw3G026070 Rw4G015740 Rw4G015790 Rw4G015910 Rw4G015930 Rw4G015950 Rw4G017900 Rw4G017930 Rw4G018440 Rw4G018450 Rw4G018530 Rw4G020720 Rw4G020760 Rw5G019250 Rw5G034370 Rw7G018700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1028, 1608
AasI GACNNNNNNGTC 1 cut(s) 2529
AbsI CCTCGAGG 1 cut(s) 2351
Acc65I GGTACC 1 cut(s) 2968
AccB1I GGYRCC 1 cut(s) 2968
AccB7I CCANNNNNTGG 3 cut(s) 1954, 2123, 2864
AccBSI CCGCTC 1 cut(s) 3660
AccI GTMKAC 3 cut(s) 2905, 3259, 3621
AccII CGCG 2 cut(s) 174, 3093
AccIII TCCGGA 1 cut(s) 2593
AciI CCGC 9 cut(s) 174, 1681, 2445, 2638, 2662, 2731, 3091, 3220, 3660
AclWI GGATC 7 cut(s) 860, 1189, 1339, 2194, 2236, 2635, 3401
AcoI YGGCCR 3 cut(s) 1440, 1597, 3088
AcuI CTGAAG 1 cut(s) 3460
AdeI CACNNNGTG 2 cut(s) 1954, 2780
AfiI CCNNNNNNNGG 8 cut(s) 417, 623, 984, 1402, 1954, 2123, 2864, 2937
AflII CTTAAG 1 cut(s) 733
AflIII ACRYGT 1 cut(s) 3254
AjnI CCWGG 3 cut(s) 597, 616, 1651
AleI CACNNNNGTG 1 cut(s) 80
AloI GAACNNNNNNTCC 2 cut(s) 2531, 2563
Alw21I GWGCWC 5 cut(s) 1063, 2395, 3103, 3345, 3531
Alw26I GTCTC 9 cut(s) 173, 490, 968, 1076, 2789, 3148, 3179, 3423, 3464
Alw44I GTGCAC 1 cut(s) 3099
AlwI GGATC 7 cut(s) 860, 1189, 1339, 2194, 2236, 2635, 3401
Ama87I CYCGRG 2 cut(s) 918, 2351
Aor13HI TCCGGA 1 cut(s) 2593
ApaLI GTGCAC 1 cut(s) 3099
AseI ATTAAT 2 cut(s) 1127, 2600
Asp700I GAANNNNTTC 3 cut(s) 1234, 1647, 3432
Asp718I GGTACC 1 cut(s) 2968
AspA2I CCTAGG 1 cut(s) 983
AspLEI GCGC 2 cut(s) 1158, 2317
AspS9I GGNCC 4 cut(s) 595, 1784, 3110, 3662
AsuC2I CCSGG 2 cut(s) 2910, 3400
AsuHPI GGTGA 8 cut(s) 61, 208, 1367, 2213, 2476, 2879, 3292, 3586
AsuII TTCGAA 1 cut(s) 2550
AsuNHI GCTAGC 1 cut(s) 2059
AvaI CYCGRG 2 cut(s) 918, 2351
AvaII GGWCC 2 cut(s) 595, 1784
AvrII CCTAGG 1 cut(s) 983
BaeGI GKGCMC 2 cut(s) 2963, 3103
BalI TGGCCA 1 cut(s) 1442
BanI GGYRCC 1 cut(s) 2968
BanII GRGCYC 1 cut(s) 3345
BauI CACGAG 2 cut(s) 80, 3048
BbsI GAAGAC 2 cut(s) 216, 1006
Bbv12I GWGCWC 5 cut(s) 1063, 2395, 3103, 3345, 3531
BbvCI CCTCAGC 1 cut(s) 30
BcgI CGANNNNNNTGC 2 cut(s) 1284, 1318
BciT130I CCWGG 3 cut(s) 599, 618, 1653
BciVI GTATCC 3 cut(s) 715, 1716, 2697
BclI TGATCA 2 cut(s) 558, 1671
BcnI CCSGG 2 cut(s) 2910, 3400
BcoDI GTCTC 9 cut(s) 173, 490, 968, 1076, 2789, 3148, 3179, 3423, 3464
BfmI CTRYAG 2 cut(s) 3292, 3622
BfoI RGCGCY 1 cut(s) 2318
BfrI CTTAAG 1 cut(s) 733
BfuI GTATCC 3 cut(s) 715, 1716, 2697
BglII AGATCT 2 cut(s) 100, 202
BlnI CCTAGG 1 cut(s) 983
BmcAI AGTACT 1 cut(s) 468
Bme1390I CCNGG 5 cut(s) 599, 618, 1653, 2910, 3400
Bme18I GGWCC 2 cut(s) 595, 1784
BmeT110I CYCGRG 2 cut(s) 918, 2351
BmgT120I GGNCC 4 cut(s) 595, 1784, 3110, 3662
BmiI GGNNCC 1 cut(s) 2970
BmrFI CCNGG 5 cut(s) 599, 618, 1653, 2910, 3400
BmrI ACTGGG 2 cut(s) 1736, 2391
BmtI GCTAGC 1 cut(s) 2063
BmuI ACTGGG 2 cut(s) 1736, 2391
BpiI GAAGAC 2 cut(s) 216, 1006
BpmI CTGGAG 1 cut(s) 472
Bpu10I CCTNAGC 2 cut(s) 30, 3408
Bpu14I TTCGAA 1 cut(s) 2550
BpuMI CCSGG 2 cut(s) 2910, 3400
Bsa29I ATCGAT 1 cut(s) 3084
BsaBI GATNNNNATC 1 cut(s) 3614
BsaI GGTCTC 3 cut(s) 968, 2789, 3464
BsaJI CCNNGG 6 cut(s) 45, 983, 1314, 1652, 1921, 2964
BsaWI WCCGGW 5 cut(s) 331, 592, 1746, 2593, 3262
BsaXI ACNNNNNCTCC 8 cut(s) 521, 551, 1857, 1887, 2377, 2407, 2838, 2868
Bsc4I CCNNNNNNNGG 8 cut(s) 417, 623, 984, 1402, 1954, 2123, 2864, 2937
Bse1I ACTGG 4 cut(s) 1731, 1816, 2318, 2397
Bse3DI GCAATG 2 cut(s) 508, 2270
Bse8I GATNNNNATC 1 cut(s) 3614
BseAI TCCGGA 1 cut(s) 2593
BseBI CCWGG 3 cut(s) 599, 618, 1653
BseCI ATCGAT 1 cut(s) 3084
BseDI CCNNGG 6 cut(s) 45, 983, 1314, 1652, 1921, 2964
BseJI GATNNNNATC 1 cut(s) 3614
BseLI CCNNNNNNNGG 8 cut(s) 417, 623, 984, 1402, 1954, 2123, 2864, 2937
BseMI GCAATG 2 cut(s) 508, 2270
BseMII CTCAG 4 cut(s) 21, 2181, 2622, 2984
BseNI ACTGG 4 cut(s) 1731, 1816, 2318, 2397
BseRI GAGGAG 6 cut(s) 542, 904, 1421, 2369, 3066, 3668
BseSI GKGCMC 2 cut(s) 2963, 3103
BseYI CCCAGC 1 cut(s) 3355
BsgI GTGCAG 1 cut(s) 1895
Bsh1236I CGCG 2 cut(s) 174, 3093
BshNI GGYRCC 1 cut(s) 2968
BshVI ATCGAT 1 cut(s) 3084
BsiHKAI GWGCWC 5 cut(s) 1063, 2395, 3103, 3345, 3531
BsiHKCI CYCGRG 2 cut(s) 918, 2351
BsiSI CCGG 8 cut(s) 332, 593, 1747, 2537, 2594, 2909, 3263, 3399
BslFI GGGAC 4 cut(s) 1743, 2099, 2874, 3612
BslI CCNNNNNNNGG 8 cut(s) 417, 623, 984, 1402, 1954, 2123, 2864, 2937
BsmAI GTCTC 9 cut(s) 173, 490, 968, 1076, 2789, 3148, 3179, 3423, 3464
BsmBI CGTCTC 1 cut(s) 490
BsmFI GGGAC 4 cut(s) 1743, 2099, 2874, 3612
BsmI GAATGC 3 cut(s) 160, 618, 3350
Bso31I GGTCTC 3 cut(s) 968, 2789, 3464
BsoBI CYCGRG 2 cut(s) 918, 2351
Bsp119I TTCGAA 1 cut(s) 2550
Bsp1286I GDGCHC 6 cut(s) 1063, 2395, 2963, 3103, 3345, 3531
Bsp13I TCCGGA 1 cut(s) 2593
Bsp1407I TGTACA 1 cut(s) 2375
BspACI CCGC 9 cut(s) 174, 1681, 2445, 2638, 2662, 2731, 3091, 3220, 3660
BspCNI CTCAG 4 cut(s) 22, 2182, 2623, 2985
BspDI ATCGAT 1 cut(s) 3084
BspEI TCCGGA 1 cut(s) 2593
BspFNI CGCG 2 cut(s) 174, 3093
BspHI TCATGA 2 cut(s) 655, 2020
BspLI GGNNCC 1 cut(s) 2970
BspMAI CTGCAG 1 cut(s) 3296
BspOI GCTAGC 1 cut(s) 2063
BspPI GGATC 7 cut(s) 860, 1189, 1339, 2194, 2236, 2635, 3401
BspT104I TTCGAA 1 cut(s) 2550
BspT107I GGYRCC 1 cut(s) 2968
BspTI CTTAAG 1 cut(s) 733
BspTNI GGTCTC 3 cut(s) 968, 2789, 3464
BsrBI CCGCTC 1 cut(s) 3660
BsrDI GCAATG 2 cut(s) 508, 2270
BsrGI TGTACA 1 cut(s) 2375
BsrI ACTGG 4 cut(s) 1731, 1816, 2318, 2397
BssECI CCNNGG 6 cut(s) 45, 983, 1314, 1652, 1921, 2964
BssSI CACGAG 2 cut(s) 80, 3048
BssT1I CCWWGG 5 cut(s) 45, 983, 1314, 1921, 2964
Bst2BI CACGAG 2 cut(s) 80, 3048
Bst2UI CCWGG 3 cut(s) 599, 618, 1653
Bst4CI ACNGT 9 cut(s) 184, 484, 2219, 2506, 2780, 2888, 2950, 3288, 3626
Bst6I CTCTTC 3 cut(s) 1638, 3153, 3305
BstAFI CTTAAG 1 cut(s) 733
BstAPI GCANNNNNTGC 1 cut(s) 3326
BstAUI TGTACA 1 cut(s) 2375
BstBI TTCGAA 1 cut(s) 2550
BstC8I GCNNGC 4 cut(s) 60, 1601, 2061, 2453
BstENI CCTNNNNNAGG 1 cut(s) 621
BstFNI CGCG 2 cut(s) 174, 3093
BstH2I RGCGCY 1 cut(s) 2318
BstHHI GCGC 2 cut(s) 1158, 2317
BstMAI GTCTC 9 cut(s) 173, 490, 968, 1076, 2789, 3148, 3179, 3423, 3464
BstMWI GCNNNNNNNGC 7 cut(s) 224, 498, 1939, 2442, 3326, 3356, 3365
BstNI CCWGG 3 cut(s) 599, 618, 1653
BstNSI RCATGY 2 cut(s) 2455, 3258
BstSCI CCNGG 5 cut(s) 597, 616, 1651, 2908, 3398
BstSFI CTRYAG 2 cut(s) 3292, 3622
BstSLI GKGCMC 2 cut(s) 2963, 3103
BstUI CGCG 2 cut(s) 174, 3093
BstV2I GAAGAC 2 cut(s) 216, 1006
BstX2I RGATCY 5 cut(s) 100, 202, 865, 2186, 2627
BstXI CCANNNNNNTGG 1 cut(s) 876
BstYI RGATCY 5 cut(s) 100, 202, 865, 2186, 2627
Bsu15I ATCGAT 1 cut(s) 3084
BsuI GTATCC 3 cut(s) 715, 1716, 2697
BsuTUI ATCGAT 1 cut(s) 3084
Cac8I GCNNGC 4 cut(s) 60, 1601, 2061, 2453
CciI TCATGA 2 cut(s) 655, 2020
CfoI GCGC 2 cut(s) 1158, 2317
Cfr13I GGNCC 4 cut(s) 595, 1784, 3110, 3662
ClaI ATCGAT 1 cut(s) 3084
CseI GACGC 1 cut(s) 276
CspCI CAANNNNNGTGG 2 cut(s) 697, 732
CviAII CATG 9 cut(s) 656, 970, 2021, 2029, 2049, 2210, 2437, 2452, 3255
DraI TTTAAA 4 cut(s) 349, 910, 1429, 1812
DraIII CACNNNGTG 2 cut(s) 1954, 2780
DrdI GACNNNNNNGTC 1 cut(s) 2529
DseDI GACNNNNNNGTC 1 cut(s) 2529
EaeI YGGCCR 3 cut(s) 1440, 1597, 3088
Eam1104I CTCTTC 3 cut(s) 1638, 3153, 3305
EarI CTCTTC 3 cut(s) 1638, 3153, 3305
Ecl136II GAGCTC 1 cut(s) 3343
Eco130I CCWWGG 5 cut(s) 45, 983, 1314, 1921, 2964
Eco147I AGGCCT 3 cut(s) 988, 1983, 2853
Eco24I GRGCYC 1 cut(s) 3345
Eco31I GGTCTC 3 cut(s) 968, 2789, 3464
Eco47I GGWCC 2 cut(s) 595, 1784
Eco53kI GAGCTC 1 cut(s) 3343
Eco57I CTGAAG 1 cut(s) 3460
Eco88I CYCGRG 2 cut(s) 918, 2351
EcoICRI GAGCTC 1 cut(s) 3343
EcoNI CCTNNNNNAGG 1 cut(s) 621
EcoRI GAATTC 3 cut(s) 71, 1230, 2024
EcoRII CCWGG 3 cut(s) 597, 616, 1651
EcoT14I CCWWGG 5 cut(s) 45, 983, 1314, 1921, 2964
EcoT22I ATGCAT 1 cut(s) 3352
EcoT38I GRGCYC 1 cut(s) 3345
ErhI CCWWGG 5 cut(s) 45, 983, 1314, 1921, 2964
Esp3I CGTCTC 1 cut(s) 490
FaeI CATG 9 cut(s) 659, 973, 2024, 2032, 2052, 2213, 2440, 2455, 3258
FalI AAGNNNNNCTT 6 cut(s) 716, 748, 1325, 1357, 1356, 1388
FaqI GGGAC 4 cut(s) 1743, 2099, 2874, 3612
FatI CATG 9 cut(s) 655, 969, 2020, 2028, 2048, 2209, 2436, 2451, 3254
FauI CCCGC 1 cut(s) 167
FauNDI CATATG 1 cut(s) 291
FbaI TGATCA 2 cut(s) 558, 1671
FblI GTMKAC 3 cut(s) 2905, 3259, 3621
FriOI GRGCYC 1 cut(s) 3345
GlaI GCGC 2 cut(s) 1157, 2316
GsaI CCCAGC 1 cut(s) 3359
GsuI CTGGAG 1 cut(s) 472
HaeII RGCGCY 1 cut(s) 2318
HapII CCGG 8 cut(s) 332, 593, 1747, 2537, 2594, 2909, 3263, 3399
HgaI GACGC 1 cut(s) 276
HhaI GCGC 2 cut(s) 1158, 2317
Hin1II CATG 9 cut(s) 659, 973, 2024, 2032, 2052, 2213, 2440, 2455, 3258
Hin6I GCGC 2 cut(s) 1156, 2315
HinP1I GCGC 2 cut(s) 1156, 2315
HincII GTYRAC 2 cut(s) 903, 2215
HindII GTYRAC 2 cut(s) 903, 2215
HpaI GTTAAC 1 cut(s) 903
HpaII CCGG 8 cut(s) 332, 593, 1747, 2537, 2594, 2909, 3263, 3399
HphI GGTGA 8 cut(s) 61, 208, 1367, 2213, 2476, 2879, 3292, 3586
Hpy99I CGWCG 1 cut(s) 270
HpyCH4III ACNGT 9 cut(s) 184, 484, 2219, 2506, 2780, 2888, 2950, 3288, 3626
HpyCH4IV ACGT 1 cut(s) 1461
HpyF10VI GCNNNNNNNGC 7 cut(s) 224, 498, 1939, 2442, 3326, 3356, 3365
HpySE526I ACGT 1 cut(s) 1461
Hsp92II CATG 9 cut(s) 659, 973, 2024, 2032, 2052, 2213, 2440, 2455, 3258
HspAI GCGC 2 cut(s) 1156, 2315
Kpn2I TCCGGA 1 cut(s) 2593
KpnI GGTACC 1 cut(s) 2972
Ksp22I TGATCA 2 cut(s) 558, 1671
KspAI GTTAAC 1 cut(s) 903
LmnI GCTCC 4 cut(s) 1066, 2356, 2398, 3340
MaeII ACGT 1 cut(s) 1461
MbiI CCGCTC 1 cut(s) 3660
MfeI CAATTG 6 cut(s) 1086, 1185, 1524, 2954, 3074, 3321
MflI RGATCY 5 cut(s) 100, 202, 865, 2186, 2627
MhlI GDGCHC 6 cut(s) 1063, 2395, 2963, 3103, 3345, 3531
MlsI TGGCCA 1 cut(s) 1442
MluNI TGGCCA 1 cut(s) 1442
MlyI GAGTC 5 cut(s) 113, 1839, 2121, 3026, 3562
MmeI TCCRAC 3 cut(s) 289, 1372, 2011
Mox20I TGGCCA 1 cut(s) 1442
Mph1103I ATGCAT 1 cut(s) 3352
MroI TCCGGA 1 cut(s) 2593
MroXI GAANNNNTTC 3 cut(s) 1234, 1647, 3432
MscI TGGCCA 1 cut(s) 1442
MslI CAYNNNNRTG 1 cut(s) 80
Msp20I TGGCCA 1 cut(s) 1442
MspA1I CMGCKG 1 cut(s) 2640
MspCI CTTAAG 1 cut(s) 733
MspI CCGG 8 cut(s) 332, 593, 1747, 2537, 2594, 2909, 3263, 3399
MspR9I CCNGG 5 cut(s) 599, 618, 1653, 2910, 3400
MssI GTTTAAAC 1 cut(s) 1812
MunI CAATTG 6 cut(s) 1086, 1185, 1524, 2954, 3074, 3321
Mva1269I GAATGC 3 cut(s) 160, 618, 3350
MvaI CCWGG 3 cut(s) 599, 618, 1653
MvnI CGCG 2 cut(s) 174, 3093
MwoI GCNNNNNNNGC 7 cut(s) 224, 498, 1939, 2442, 3326, 3356, 3365
NciI CCSGG 2 cut(s) 2910, 3400
NdeI CATATG 1 cut(s) 291
NheI GCTAGC 1 cut(s) 2059
NlaIII CATG 9 cut(s) 659, 973, 2024, 2032, 2052, 2213, 2440, 2455, 3258
NlaIV GGNNCC 1 cut(s) 2970
NmuCI GTSAC 8 cut(s) 49, 116, 674, 937, 950, 1169, 2744, 3282
NsiI ATGCAT 1 cut(s) 3352
NspI RCATGY 2 cut(s) 2455, 3258
NspV TTCGAA 1 cut(s) 2550
OliI CACNNNNGTG 1 cut(s) 80
PaeI GCATGC 1 cut(s) 2455
PaeR7I CTCGAG 2 cut(s) 918, 2351
PagI TCATGA 2 cut(s) 655, 2020
PceI AGGCCT 3 cut(s) 988, 1983, 2853
PciI ACATGT 1 cut(s) 3254
PcsI WCGNNNNNNNCGW 1 cut(s) 3090
PctI GAATGC 3 cut(s) 160, 618, 3350
PdmI GAANNNNTTC 3 cut(s) 1234, 1647, 3432
PflFI GACNNNGTC 2 cut(s) 2210, 2365
PflMI CCANNNNNTGG 3 cut(s) 1954, 2123, 2864
PleI GAGTC 5 cut(s) 113, 1839, 2120, 3026, 3561
PmeI GTTTAAAC 1 cut(s) 1812
PpsI GAGTC 5 cut(s) 113, 1839, 2120, 3026, 3561
PscI ACATGT 1 cut(s) 3254
PshBI ATTAAT 2 cut(s) 1127, 2600
PsiI TTATAA 2 cut(s) 1028, 1608
Psp124BI GAGCTC 1 cut(s) 3345
Psp6I CCWGG 3 cut(s) 597, 616, 1651
PspFI CCCAGC 1 cut(s) 3355
PspGI CCWGG 3 cut(s) 597, 616, 1651
PspN4I GGNNCC 1 cut(s) 2970
PspPI GGNCC 4 cut(s) 595, 1784, 3110, 3662
PspXI VCTCGAGB 2 cut(s) 918, 2351
PstI CTGCAG 1 cut(s) 3296
PsuI RGATCY 5 cut(s) 100, 202, 865, 2186, 2627
PsyI GACNNNGTC 2 cut(s) 2210, 2365
RseI CAYNNNNRTG 1 cut(s) 80
SacI GAGCTC 1 cut(s) 3345
Sau96I GGNCC 4 cut(s) 595, 1784, 3110, 3662
ScaI AGTACT 1 cut(s) 468
SchI GAGTC 5 cut(s) 113, 1839, 2121, 3026, 3562
ScrFI CCNGG 5 cut(s) 599, 618, 1653, 2910, 3400
SduI GDGCHC 6 cut(s) 1063, 2395, 2963, 3103, 3345, 3531
SfcI CTRYAG 2 cut(s) 3292, 3622
Sfr274I CTCGAG 2 cut(s) 918, 2351
SfuI TTCGAA 1 cut(s) 2550
SinI GGWCC 2 cut(s) 595, 1784
SlaI CTCGAG 2 cut(s) 918, 2351
SmiMI CAYNNNNRTG 1 cut(s) 80
SphI GCATGC 1 cut(s) 2455
SseBI AGGCCT 3 cut(s) 988, 1983, 2853
SsiI CCGC 9 cut(s) 174, 1681, 2445, 2638, 2662, 2731, 3091, 3220, 3660
SspI AATATT 1 cut(s) 1424
SstI GAGCTC 1 cut(s) 3345
StuI AGGCCT 3 cut(s) 988, 1983, 2853
StyD4I CCNGG 5 cut(s) 597, 616, 1651, 2908, 3398
StyI CCWWGG 5 cut(s) 45, 983, 1314, 1921, 2964
TaaI ACNGT 9 cut(s) 184, 484, 2219, 2506, 2780, 2888, 2950, 3288, 3626
TaiI ACGT 1 cut(s) 1464
TatI WGTACW 7 cut(s) 466, 1972, 2375, 2606, 2757, 2950, 2996
TauI GCSGC 4 cut(s) 1684, 2665, 3093, 3663
TseFI GTSAC 8 cut(s) 49, 116, 674, 937, 950, 1169, 2744, 3282
Tsp45I GTSAC 8 cut(s) 49, 116, 674, 937, 950, 1169, 2744, 3282
TspGWI ACGGA 2 cut(s) 272, 3059
Tth111I GACNNNGTC 2 cut(s) 2210, 2365
Van91I CCANNNNNTGG 3 cut(s) 1954, 2123, 2864
Vha464I CTTAAG 1 cut(s) 733
VneI GTGCAC 1 cut(s) 3099
VpaK11BI GGWCC 2 cut(s) 595, 1784
VspI ATTAAT 2 cut(s) 1127, 2600
XagI CCTNNNNNAGG 1 cut(s) 621
XbaI TCTAGA 5 cut(s) 754, 1997, 3028, 3556, 3634
XceI RCATGY 2 cut(s) 2455, 3258
XcmI CCANNNNNNNNNTGG 1 cut(s) 2216
XhoI CTCGAG 2 cut(s) 918, 2351
XmaJI CCTAGG 1 cut(s) 983
XmiI GTMKAC 3 cut(s) 2905, 3259, 3621
XmnI GAANNNNTTC 3 cut(s) 1234, 1647, 3432
ZrmI AGTACT 1 cut(s) 468
Zsp2I ATGCAT 1 cut(s) 3352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.