disease resistance
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 79 - 128 | 2.6e-06 | PPR repeat family |
| PPR_2 | PF13041 | 282 - 330 | 2.1e-09 | PPR repeat family |
| PPR_2 | PF13041 | 384 - 431 | 2.4e-09 | PPR repeat family |
| PPR_3 | PF13812 | 384 - 432 | 1.9e-06 | Pentatricopeptide repeat domain |
| PPR | PF01535 | 387 - 416 | 2.8e-06 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1193 |
| AccI | GTMKAC | 1 cut(s) | 873 |
| AccII | CGCG | 1 cut(s) | 817 |
| AciI | CCGC | 3 cut(s) | 444, 1061, 1238 |
| AcoI | YGGCCR | 5 cut(s) | 15, 390, 403, 678, 1291 |
| AcsI | RAATTY | 1 cut(s) | 527 |
| AfaI | GTAC | 4 cut(s) | 21, 1091, 1359, 1530 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1678 |
| AflII | CTTAAG | 1 cut(s) | 1022 |
| AflIII | ACRYGT | 1 cut(s) | 760 |
| AgeI | ACCGGT | 1 cut(s) | 137 |
| AgsI | TTSAA | 5 cut(s) | 253, 313, 644, 938, 1370 |
| AjnI | CCWGG | 2 cut(s) | 24, 405 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 378, 410, 615, 647 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 702, 734 |
| Alw21I | GWGCWC | 1 cut(s) | 382 |
| Alw26I | GTCTC | 1 cut(s) | 103 |
| AoxI | GGCC | 7 cut(s) | 15, 47, 390, 403, 678, 1291, 1488 |
| ApeKI | GCWGC | 5 cut(s) | 87, 206, 592, 989, 1245 |
| ApoI | RAATTY | 1 cut(s) | 527 |
| ArsI | GACNNNNNNTTYG | 3 cut(s) | 27, 27, 59 |
| AsiGI | ACCGGT | 1 cut(s) | 137 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 242 |
| AspLEI | GCGC | 1 cut(s) | 817 |
| AsuHPI | GGTGA | 4 cut(s) | 182, 352, 698, 1669 |
| AsuII | TTCGAA | 2 cut(s) | 229, 1131 |
| BalI | TGGCCA | 3 cut(s) | 392, 405, 1293 |
| BanII | GRGCYC | 2 cut(s) | 328, 1692 |
| BauI | CACGAG | 2 cut(s) | 381, 597 |
| Bbv12I | GWGCWC | 1 cut(s) | 382 |
| BbvI | GCAGC | 5 cut(s) | 74, 218, 604, 976, 1232 |
| BccI | CCATC | 7 cut(s) | 562, 733, 824, 1330, 1457, 1569, 1648 |
| BceAI | ACGGC | 2 cut(s) | 2, 938 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 157, 191, 818, 852, 1467, 1501 |
| BciT130I | CCWGG | 2 cut(s) | 26, 407 |
| BclI | TGATCA | 1 cut(s) | 129 |
| BcoDI | GTCTC | 1 cut(s) | 103 |
| BfaI | CTAG | 4 cut(s) | 341, 648, 1109, 1304 |
| BfmI | CTRYAG | 2 cut(s) | 1225, 1492 |
| BfrI | CTTAAG | 1 cut(s) | 1022 |
| BfuAI | ACCTGC | 1 cut(s) | 1193 |
| BisI | GCNGC | 5 cut(s) | 88, 207, 593, 990, 1246 |
| BlpI | GCTNAGC | 1 cut(s) | 1691 |
| BlsI | GCNGC | 5 cut(s) | 89, 208, 594, 991, 1247 |
| Bme1390I | CCNGG | 2 cut(s) | 26, 407 |
| BmrFI | CCNGG | 2 cut(s) | 26, 407 |
| BmrI | ACTGGG | 1 cut(s) | 1667 |
| BmsI | GCATC | 2 cut(s) | 496, 1048 |
| BmuI | ACTGGG | 1 cut(s) | 1667 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1691 |
| Bpu14I | TTCGAA | 2 cut(s) | 229, 1131 |
| BpuEI | CTTGAG | 3 cut(s) | 184, 340, 1234 |
| Bsa29I | ATCGAT | 1 cut(s) | 1389 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1560 |
| BsaJI | CCNNGG | 4 cut(s) | 25, 118, 406, 703 |
| BsaWI | WCCGGW | 1 cut(s) | 137 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 194, 224, 702, 732, 825, 855, 1641, 1671 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1678 |
| Bse118I | RCCGGY | 1 cut(s) | 137 |
| Bse1I | ACTGG | 4 cut(s) | 84, 346, 406, 1673 |
| Bse3DI | GCAATG | 4 cut(s) | 257, 1478, 1581, 1599 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1560 |
| BseBI | CCWGG | 2 cut(s) | 26, 407 |
| BseCI | ATCGAT | 1 cut(s) | 1389 |
| BseDI | CCNNGG | 4 cut(s) | 25, 118, 406, 703 |
| BseGI | GGATG | 6 cut(s) | 195, 511, 853, 1063, 1156, 1561 |
| BseJI | GATNNNNATC | 1 cut(s) | 1560 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1678 |
| BseMI | GCAATG | 4 cut(s) | 257, 1478, 1581, 1599 |
| BseMII | CTCAG | 4 cut(s) | 114, 277, 548, 1705 |
| BseNI | ACTGG | 4 cut(s) | 84, 346, 406, 1673 |
| BseRI | GAGGAG | 4 cut(s) | 164, 723, 1052, 1055 |
| BseXI | GCAGC | 5 cut(s) | 74, 218, 604, 976, 1232 |
| BseYI | CCCAGC | 1 cut(s) | 1685 |
| BsgI | GTGCAG | 1 cut(s) | 1425 |
| Bsh1236I | CGCG | 1 cut(s) | 817 |
| BshFI | GGCC | 7 cut(s) | 17, 49, 392, 405, 680, 1293, 1490 |
| BshTI | ACCGGT | 1 cut(s) | 137 |
| BshVI | ATCGAT | 1 cut(s) | 1389 |
| BsiHKAI | GWGCWC | 1 cut(s) | 382 |
| BsiSI | CCGG | 1 cut(s) | 138 |
| BsiWI | CGTACG | 1 cut(s) | 19 |
| BslFI | GGGAC | 2 cut(s) | 412, 1603 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1678 |
| BsmAI | GTCTC | 1 cut(s) | 103 |
| BsmFI | GGGAC | 2 cut(s) | 412, 1603 |
| BsmI | GAATGC | 1 cut(s) | 89 |
| BsnI | GGCC | 7 cut(s) | 17, 49, 392, 405, 680, 1293, 1490 |
| Bsp119I | TTCGAA | 2 cut(s) | 229, 1131 |
| Bsp1286I | GDGCHC | 3 cut(s) | 328, 382, 1692 |
| Bsp1407I | TGTACA | 1 cut(s) | 1528 |
| Bsp143I | GATC | 3 cut(s) | 129, 1386, 1390 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1691 |
| Bsp19I | CCATGG | 1 cut(s) | 118 |
| BspACI | CCGC | 3 cut(s) | 444, 1061, 1238 |
| BspANI | GGCC | 7 cut(s) | 17, 49, 392, 405, 680, 1293, 1490 |
| BspCNI | CTCAG | 4 cut(s) | 113, 276, 547, 1704 |
| BspDI | ATCGAT | 1 cut(s) | 1389 |
| BspFNI | CGCG | 1 cut(s) | 817 |
| BspMAI | CTGCAG | 1 cut(s) | 1496 |
| BspMI | ACCTGC | 1 cut(s) | 1193 |
| BspQI | GCTCTTC | 1 cut(s) | 1226 |
| BspT104I | TTCGAA | 2 cut(s) | 229, 1131 |
| BspTI | CTTAAG | 1 cut(s) | 1022 |
| BsrDI | GCAATG | 4 cut(s) | 257, 1478, 1581, 1599 |
| BsrFI | RCCGGY | 1 cut(s) | 137 |
| BsrGI | TGTACA | 1 cut(s) | 1528 |
| BsrI | ACTGG | 4 cut(s) | 84, 346, 406, 1673 |
| BssAI | RCCGGY | 1 cut(s) | 137 |
| BssECI | CCNNGG | 4 cut(s) | 25, 118, 406, 703 |
| BssMI | GATC | 3 cut(s) | 129, 1386, 1390 |
| BssSI | CACGAG | 2 cut(s) | 381, 597 |
| BssT1I | CCWWGG | 2 cut(s) | 118, 703 |
| Bst2BI | CACGAG | 2 cut(s) | 381, 597 |
| Bst2UI | CCWGG | 2 cut(s) | 26, 407 |
| Bst4CI | ACNGT | 6 cut(s) | 457, 485, 661, 1187, 1379, 1642 |
| Bst6I | CTCTTC | 2 cut(s) | 187, 1226 |
| BstAFI | CTTAAG | 1 cut(s) | 1022 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1208, 1475 |
| BstAUI | TGTACA | 1 cut(s) | 1528 |
| BstBI | TTCGAA | 2 cut(s) | 229, 1131 |
| BstC8I | GCNNGC | 5 cut(s) | 170, 1445, 1476, 1492, 1542 |
| BstDEI | CTNAG | 4 cut(s) | 100, 263, 534, 1691 |
| BstDSI | CCRYGG | 1 cut(s) | 118 |
| BstEII | GGTNACC | 1 cut(s) | 575 |
| BstF5I | GGATG | 6 cut(s) | 195, 511, 853, 1063, 1156, 1561 |
| BstFNI | CGCG | 1 cut(s) | 817 |
| BstHHI | GCGC | 1 cut(s) | 817 |
| BstKTI | GATC | 3 cut(s) | 132, 1389, 1393 |
| BstMAI | GTCTC | 1 cut(s) | 103 |
| BstMBI | GATC | 3 cut(s) | 129, 1386, 1390 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 989, 1208, 1475, 1480 |
| BstNI | CCWGG | 2 cut(s) | 26, 407 |
| BstNSI | RCATGY | 1 cut(s) | 764 |
| BstPI | GGTNACC | 1 cut(s) | 575 |
| BstSCI | CCNGG | 2 cut(s) | 24, 405 |
| BstSFI | CTRYAG | 2 cut(s) | 1225, 1492 |
| BstUI | CGCG | 1 cut(s) | 817 |
| BstV1I | GCAGC | 5 cut(s) | 74, 218, 604, 976, 1232 |
| Bsu15I | ATCGAT | 1 cut(s) | 1389 |
| BsuRI | GGCC | 7 cut(s) | 17, 49, 392, 405, 680, 1293, 1490 |
| BsuTUI | ATCGAT | 1 cut(s) | 1389 |
| BtgI | CCRYGG | 1 cut(s) | 118 |
| BtsCI | GGATG | 6 cut(s) | 195, 511, 853, 1063, 1156, 1561 |
| BtsIMutI | CAGTG | 2 cut(s) | 453, 657 |
| BveI | ACCTGC | 1 cut(s) | 1193 |
| Cac8I | GCNNGC | 5 cut(s) | 170, 1445, 1476, 1492, 1542 |
| CfoI | GCGC | 1 cut(s) | 817 |
| Cfr10I | RCCGGY | 1 cut(s) | 137 |
| ClaI | ATCGAT | 1 cut(s) | 1389 |
| CseI | GACGC | 1 cut(s) | 806 |
| Csp6I | GTAC | 4 cut(s) | 20, 1090, 1358, 1529 |
| CspAI | ACCGGT | 1 cut(s) | 137 |
| CviQI | GTAC | 4 cut(s) | 20, 1090, 1358, 1529 |
| DdeI | CTNAG | 4 cut(s) | 100, 263, 534, 1691 |
| DpnI | GATC | 3 cut(s) | 131, 1388, 1392 |
| DpnII | GATC | 3 cut(s) | 129, 1386, 1390 |
| EaeI | YGGCCR | 5 cut(s) | 15, 390, 403, 678, 1291 |
| Eam1104I | CTCTTC | 2 cut(s) | 187, 1226 |
| EarI | CTCTTC | 2 cut(s) | 187, 1226 |
| Eco130I | CCWWGG | 2 cut(s) | 118, 703 |
| Eco24I | GRGCYC | 2 cut(s) | 328, 1692 |
| Eco91I | GGTNACC | 1 cut(s) | 575 |
| EcoO65I | GGTNACC | 1 cut(s) | 575 |
| EcoRII | CCWGG | 2 cut(s) | 24, 405 |
| EcoT14I | CCWWGG | 2 cut(s) | 118, 703 |
| EcoT38I | GRGCYC | 2 cut(s) | 328, 1692 |
| ErhI | CCWWGG | 2 cut(s) | 118, 703 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 288, 320 |
| FaqI | GGGAC | 2 cut(s) | 412, 1603 |
| FauI | CCCGC | 1 cut(s) | 437 |
| FbaI | TGATCA | 1 cut(s) | 129 |
| FblI | GTMKAC | 1 cut(s) | 873 |
| Fnu4HI | GCNGC | 5 cut(s) | 88, 207, 593, 990, 1246 |
| FokI | GGATG | 6 cut(s) | 182, 518, 860, 1070, 1163, 1548 |
| FriOI | GRGCYC | 2 cut(s) | 328, 1692 |
| Fsp4HI | GCNGC | 5 cut(s) | 88, 207, 593, 990, 1246 |
| FspBI | CTAG | 4 cut(s) | 341, 648, 1109, 1304 |
| GlaI | GCGC | 1 cut(s) | 816 |
| GluI | GCNGC | 5 cut(s) | 88, 207, 593, 990, 1246 |
| GsaI | CCCAGC | 1 cut(s) | 1689 |
| HaeIII | GGCC | 7 cut(s) | 17, 49, 392, 405, 680, 1293, 1490 |
| HapII | CCGG | 1 cut(s) | 138 |
| HgaI | GACGC | 1 cut(s) | 806 |
| HhaI | GCGC | 1 cut(s) | 817 |
| Hin6I | GCGC | 1 cut(s) | 815 |
| HinP1I | GCGC | 1 cut(s) | 815 |
| HindIII | AAGCTT | 3 cut(s) | 297, 372, 1441 |
| HinfI | GANTC | 4 cut(s) | 4, 36, 238, 412 |
| HpaII | CCGG | 1 cut(s) | 138 |
| HphI | GGTGA | 4 cut(s) | 182, 352, 698, 1669 |
| Hpy166II | GTNNAC | 3 cut(s) | 610, 874, 960 |
| Hpy188I | TCNGA | 6 cut(s) | 55, 103, 266, 537, 822, 1310 |
| Hpy188III | TCNNGA | 7 cut(s) | 133, 143, 341, 383, 1109, 1121, 1453 |
| Hpy8I | GTNNAC | 3 cut(s) | 610, 874, 960 |
| Hpy99I | CGWCG | 2 cut(s) | 287, 822 |
| HpyAV | CCTTC | 4 cut(s) | 60, 590, 838, 1602 |
| HpyCH4III | ACNGT | 6 cut(s) | 457, 485, 661, 1187, 1379, 1642 |
| HpyCH4IV | ACGT | 1 cut(s) | 626 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 989, 1208, 1475, 1480 |
| HpyF3I | CTNAG | 4 cut(s) | 100, 263, 534, 1691 |
| HpySE526I | ACGT | 1 cut(s) | 626 |
| HspAI | GCGC | 1 cut(s) | 815 |
| Ksp22I | TGATCA | 1 cut(s) | 129 |
| Kzo9I | GATC | 3 cut(s) | 129, 1386, 1390 |
| LguI | GCTCTTC | 1 cut(s) | 1226 |
| LmnI | GCTCC | 1 cut(s) | 177 |
| Lsp1109I | GCAGC | 5 cut(s) | 74, 218, 604, 976, 1232 |
| LweI | GCATC | 2 cut(s) | 496, 1048 |
| MaeI | CTAG | 4 cut(s) | 341, 648, 1109, 1304 |
| MaeII | ACGT | 1 cut(s) | 626 |
| MaeIII | GTNAC | 8 cut(s) | 575, 652, 698, 766, 918, 1181, 1261, 1462 |
| MalI | GATC | 3 cut(s) | 131, 1388, 1392 |
| MboI | GATC | 3 cut(s) | 129, 1386, 1390 |
| MboII | GAAGA | 4 cut(s) | 174, 914, 1213, 1676 |
| MfeI | CAATTG | 1 cut(s) | 1698 |
| MhlI | GDGCHC | 3 cut(s) | 328, 382, 1692 |
| MlsI | TGGCCA | 3 cut(s) | 392, 405, 1293 |
| MluCI | AATT | 8 cut(s) | 386, 498, 527, 754, 804, 862, 952, 1698 |
| MluNI | TGGCCA | 3 cut(s) | 392, 405, 1293 |
| MlyI | GAGTC | 1 cut(s) | 30 |
| MmeI | TCCRAC | 3 cut(s) | 800, 1395, 1686 |
| Mox20I | TGGCCA | 3 cut(s) | 392, 405, 1293 |
| MroXI | GAANNNNTTC | 1 cut(s) | 242 |
| MscI | TGGCCA | 3 cut(s) | 392, 405, 1293 |
| MseI | TTAA | 4 cut(s) | 618, 735, 1023, 1280 |
| MslI | CAYNNNNRTG | 2 cut(s) | 737, 1268 |
| Msp20I | TGGCCA | 3 cut(s) | 392, 405, 1293 |
| MspCI | CTTAAG | 1 cut(s) | 1022 |
| MspI | CCGG | 1 cut(s) | 138 |
| MspR9I | CCNGG | 2 cut(s) | 26, 407 |
| MunI | CAATTG | 1 cut(s) | 1698 |
| Mva1269I | GAATGC | 1 cut(s) | 89 |
| MvaI | CCWGG | 2 cut(s) | 26, 407 |
| MvnI | CGCG | 1 cut(s) | 817 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 989, 1208, 1475, 1480 |
| NcoI | CCATGG | 1 cut(s) | 118 |
| NdeII | GATC | 3 cut(s) | 129, 1386, 1390 |
| NmuCI | GTSAC | 1 cut(s) | 1261 |
| NspI | RCATGY | 1 cut(s) | 764 |
| NspV | TTCGAA | 2 cut(s) | 229, 1131 |
| PciI | ACATGT | 1 cut(s) | 760 |
| PciSI | GCTCTTC | 1 cut(s) | 1226 |
| PctI | GAATGC | 1 cut(s) | 89 |
| PdmI | GAANNNNTTC | 1 cut(s) | 242 |
| PfeI | GAWTC | 2 cut(s) | 238, 412 |
| Pfl23II | CGTACG | 1 cut(s) | 19 |
| PinAI | ACCGGT | 1 cut(s) | 137 |
| PkrI | GCNGC | 5 cut(s) | 89, 208, 594, 991, 1247 |
| PleI | GAGTC | 1 cut(s) | 30 |
| PpsI | GAGTC | 1 cut(s) | 30 |
| PscI | ACATGT | 1 cut(s) | 760 |
| Psp6I | CCWGG | 2 cut(s) | 24, 405 |
| PspEI | GGTNACC | 1 cut(s) | 575 |
| PspFI | CCCAGC | 1 cut(s) | 1685 |
| PspGI | CCWGG | 2 cut(s) | 24, 405 |
| PspLI | CGTACG | 1 cut(s) | 19 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 645, 677 |
| PstI | CTGCAG | 1 cut(s) | 1496 |
| RsaI | GTAC | 4 cut(s) | 21, 1091, 1359, 1530 |
| RsaNI | GTAC | 4 cut(s) | 20, 1090, 1358, 1529 |
| RseI | CAYNNNNRTG | 2 cut(s) | 737, 1268 |
| SapI | GCTCTTC | 1 cut(s) | 1226 |
| SaqAI | TTAA | 4 cut(s) | 618, 735, 1023, 1280 |
| SatI | GCNGC | 5 cut(s) | 88, 207, 593, 990, 1246 |
| Sau3AI | GATC | 3 cut(s) | 129, 1386, 1390 |
| SbfI | CCTGCAGG | 1 cut(s) | 1496 |
| SchI | GAGTC | 1 cut(s) | 30 |
| ScrFI | CCNGG | 2 cut(s) | 26, 407 |
| SdaI | CCTGCAGG | 1 cut(s) | 1496 |
| SduI | GDGCHC | 3 cut(s) | 328, 382, 1692 |
| SfaNI | GCATC | 2 cut(s) | 496, 1048 |
| SfcI | CTRYAG | 2 cut(s) | 1225, 1492 |
| SfuI | TTCGAA | 2 cut(s) | 229, 1131 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 737, 1268 |
| SmlI | CTYRAG | 4 cut(s) | 163, 319, 1022, 1213 |
| SmoI | CTYRAG | 4 cut(s) | 163, 319, 1022, 1213 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 1496 |
| Sse9I | AATT | 8 cut(s) | 386, 498, 527, 754, 804, 862, 952, 1698 |
| SsiI | CCGC | 3 cut(s) | 444, 1061, 1238 |
| SspI | AATATT | 1 cut(s) | 334 |
| SspMI | CTAG | 4 cut(s) | 341, 648, 1109, 1304 |
| StyD4I | CCNGG | 2 cut(s) | 24, 405 |
| StyI | CCWWGG | 2 cut(s) | 118, 703 |
| TaaI | ACNGT | 6 cut(s) | 457, 485, 661, 1187, 1379, 1642 |
| TaiI | ACGT | 1 cut(s) | 629 |
| TaqI | TCGA | 6 cut(s) | 229, 522, 828, 1131, 1389, 1437 |
| TasI | AATT | 8 cut(s) | 386, 498, 527, 754, 804, 862, 952, 1698 |
| TatI | WGTACW | 1 cut(s) | 1528 |
| TfiI | GAWTC | 2 cut(s) | 238, 412 |
| Tru1I | TTAA | 4 cut(s) | 618, 735, 1023, 1280 |
| Tru9I | TTAA | 4 cut(s) | 618, 735, 1023, 1280 |
| TscAI | CASTG | 2 cut(s) | 460, 664 |
| TseFI | GTSAC | 1 cut(s) | 1261 |
| TseI | GCWGC | 5 cut(s) | 87, 206, 592, 989, 1245 |
| Tsp45I | GTSAC | 1 cut(s) | 1261 |
| TspRI | CASTG | 2 cut(s) | 460, 664 |
| Vha464I | CTTAAG | 1 cut(s) | 1022 |
| XapI | RAATTY | 1 cut(s) | 527 |
| XbaI | TCTAGA | 2 cut(s) | 340, 1108 |
| XceI | RCATGY | 1 cut(s) | 764 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 413, 688 |
| XmiI | GTMKAC | 1 cut(s) | 873 |
| XmnI | GAANNNNTTC | 1 cut(s) | 242 |
| XspI | CTAG | 4 cut(s) | 341, 648, 1109, 1304 |