disease resistance
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Rx_N | PF18052 | 13 - 99 | 1.7e-20 | Rx N-terminal domain |
| nSTAND1 | PF20703 | 168 - 380 | 6.5e-06 | Novel STAND NTPase 1 |
| NB-ARC | PF00931 | 177 - 351 | 4e-36 | NB-ARC domain |
| AAA_22 | PF13401 | 200 - 299 | 7.1e-06 | AAA domain |
| NACHT | PF05729 | 200 - 331 | 4.8e-06 | NACHT domain |
| WHD_DRP | PF23559 | 437 - 510 | 5.2e-23 | Disease resistance protein Winged helix domain |
| LRR_14 | PF23598 | 522 - 777 | 7.6e-29 | Leucine-rich repeat region |
| LRR_R13L1-DRL21 | PF25019 | 646 - 769 | 4.1e-34 | R13L1/DRL21 LRRs |
| LRR_14 | PF23598 | 1109 - 1263 | 4.5e-09 | Leucine-rich repeat region |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1752, 2889 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2673 |
| Acc16I | TGCGCA | 1 cut(s) | 2785 |
| AccB1I | GGYRCC | 1 cut(s) | 3263 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3260 |
| AccI | GTMKAC | 4 cut(s) | 156, 3046, 3400, 3862 |
| AccII | CGCG | 1 cut(s) | 794 |
| AciI | CCGC | 6 cut(s) | 227, 1690, 1825, 1876, 2919, 3361 |
| AclWI | GGATC | 3 cut(s) | 210, 1342, 2335 |
| AcoI | YGGCCR | 1 cut(s) | 412 |
| AcuI | CTGAAG | 1 cut(s) | 3257 |
| AfaI | GTAC | 7 cut(s) | 471, 1125, 1694, 2115, 2900, 3070, 3139 |
| AflII | CTTAAG | 1 cut(s) | 736 |
| AflIII | ACRYGT | 4 cut(s) | 1534, 1621, 1925, 3395 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3465 |
| AhlI | ACTAGT | 1 cut(s) | 1883 |
| AjiI | CACGTC | 3 cut(s) | 110, 1928, 2387 |
| AjnI | CCWGG | 4 cut(s) | 619, 986, 2061, 3104 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 153, 185, 3447, 3479 |
| Alw21I | GWGCWC | 7 cut(s) | 849, 1066, 1562, 2539, 3244, 3486, 3615 |
| Alw44I | GTGCAC | 1 cut(s) | 3240 |
| AlwI | GGATC | 3 cut(s) | 210, 1342, 2335 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 205 |
| Ama87I | CYCGRG | 2 cut(s) | 921, 1555 |
| AoxI | GGCC | 8 cut(s) | 412, 771, 2081, 2122, 2992, 3251, 3802, 3812 |
| ApaLI | GTGCAC | 1 cut(s) | 3240 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 311, 1237, 1791, 3022, 3573 |
| AspLEI | GCGC | 3 cut(s) | 1161, 2458, 2786 |
| AspS9I | GGNCC | 3 cut(s) | 3251, 3467, 3803 |
| AsuC2I | CCSGG | 4 cut(s) | 1860, 2258, 2906, 3032 |
| AsuII | TTCGAA | 1 cut(s) | 720 |
| AvaI | CYCGRG | 2 cut(s) | 921, 1555 |
| AvaII | GGWCC | 1 cut(s) | 3467 |
| BaeGI | GKGCMC | 1 cut(s) | 3244 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3296, 3329 |
| BanI | GGYRCC | 1 cut(s) | 3263 |
| BanII | GRGCYC | 2 cut(s) | 1562, 3486 |
| BauI | CACGAG | 2 cut(s) | 1215, 3189 |
| BbsI | GAAGAC | 4 cut(s) | 216, 3579, 3675, 3764 |
| Bbv12I | GWGCWC | 7 cut(s) | 849, 1066, 1562, 2539, 3244, 3486, 3615 |
| BceAI | ACGGC | 2 cut(s) | 399, 1984 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1287, 1321, 3405, 3439 |
| BciT130I | CCWGG | 4 cut(s) | 621, 988, 2063, 3106 |
| BciVI | GTATCC | 1 cut(s) | 718 |
| BclI | TGATCA | 2 cut(s) | 561, 1815 |
| BcnI | CCSGG | 4 cut(s) | 1860, 2258, 2906, 3032 |
| BcuI | ACTAGT | 1 cut(s) | 1883 |
| BfmI | CTRYAG | 6 cut(s) | 63, 113, 2236, 2913, 3308, 3433 |
| BfoI | RGCGCY | 1 cut(s) | 2459 |
| BfrI | CTTAAG | 1 cut(s) | 736 |
| BfuI | GTATCC | 1 cut(s) | 718 |
| BmcAI | AGTACT | 1 cut(s) | 471 |
| Bme1390I | CCNGG | 8 cut(s) | 621, 988, 1860, 2063, 2258, 2906, 3032, 3106 |
| Bme18I | GGWCC | 1 cut(s) | 3467 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3465 |
| BmeT110I | CYCGRG | 2 cut(s) | 921, 1555 |
| BmgBI | CACGTC | 3 cut(s) | 110, 1928, 2387 |
| BmgT120I | GGNCC | 3 cut(s) | 3251, 3467, 3803 |
| BmiI | GGNNCC | 3 cut(s) | 762, 3025, 3265 |
| BmrFI | CCNGG | 8 cut(s) | 621, 988, 1860, 2063, 2258, 2906, 3032, 3106 |
| BmrI | ACTGGG | 1 cut(s) | 2535 |
| BmsI | GCATC | 7 cut(s) | 859, 942, 2795, 2899, 3428, 3478, 3776 |
| BmuI | ACTGGG | 1 cut(s) | 2535 |
| BoxI | GACNNNNGTC | 2 cut(s) | 1926, 3281 |
| BpiI | GAAGAC | 4 cut(s) | 216, 3579, 3675, 3764 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 758, 790 |
| BpmI | CTGGAG | 1 cut(s) | 475 |
| Bpu14I | TTCGAA | 1 cut(s) | 720 |
| BpuEI | CTTGAG | 6 cut(s) | 441, 1350, 1610, 2516, 2543, 3539 |
| BpuMI | CCSGG | 4 cut(s) | 1860, 2258, 2906, 3032 |
| BsaAI | YACGTR | 1 cut(s) | 1622 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1313 |
| BsaI | GGTCTC | 4 cut(s) | 93, 279, 971, 2930 |
| BsaJI | CCNNGG | 5 cut(s) | 45, 986, 2062, 2943, 3104 |
| BsaWI | WCCGGW | 4 cut(s) | 763, 3041, 3049, 3403 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 524, 554, 2521, 2551, 2979, 3009 |
| Bse1I | ACTGG | 5 cut(s) | 596, 1960, 2541, 2973, 3647 |
| Bse3DI | GCAATG | 3 cut(s) | 333, 1895, 2411 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1313 |
| BseBI | CCWGG | 4 cut(s) | 621, 988, 2063, 3106 |
| BseDI | CCNNGG | 5 cut(s) | 45, 986, 2062, 2943, 3104 |
| BseJI | GATNNNNATC | 1 cut(s) | 1313 |
| BseMI | GCAATG | 3 cut(s) | 333, 1895, 2411 |
| BseMII | CTCAG | 7 cut(s) | 657, 1903, 1937, 2322, 2636, 2816, 3148 |
| BseNI | ACTGG | 5 cut(s) | 596, 1960, 2541, 2973, 3647 |
| BseRI | GAGGAG | 5 cut(s) | 545, 1031, 1424, 3207, 3809 |
| BseSI | GKGCMC | 1 cut(s) | 3244 |
| BsgI | GTGCAG | 1 cut(s) | 218 |
| Bsh1236I | CGCG | 1 cut(s) | 794 |
| BshFI | GGCC | 8 cut(s) | 414, 773, 2083, 2124, 2994, 3253, 3804, 3814 |
| BshNI | GGYRCC | 1 cut(s) | 3263 |
| BsiHKAI | GWGCWC | 7 cut(s) | 849, 1066, 1562, 2539, 3244, 3486, 3615 |
| BsiHKCI | CYCGRG | 2 cut(s) | 921, 1555 |
| BsiSI | CCGG | 9 cut(s) | 764, 1859, 2258, 2681, 2906, 3031, 3042, 3050, 3404 |
| BslFI | GGGAC | 1 cut(s) | 2679 |
| BsmBI | CGTCTC | 1 cut(s) | 3289 |
| BsmFI | GGGAC | 1 cut(s) | 2679 |
| BsmI | GAATGC | 1 cut(s) | 621 |
| BsnI | GGCC | 8 cut(s) | 414, 773, 2083, 2124, 2994, 3253, 3804, 3814 |
| Bso31I | GGTCTC | 4 cut(s) | 93, 279, 971, 2930 |
| BsoBI | CYCGRG | 2 cut(s) | 921, 1555 |
| Bsp119I | TTCGAA | 1 cut(s) | 720 |
| Bsp1286I | GDGCHC | 7 cut(s) | 849, 1066, 1562, 2539, 3244, 3486, 3615 |
| BspACI | CCGC | 6 cut(s) | 227, 1690, 1825, 1876, 2919, 3361 |
| BspANI | GGCC | 8 cut(s) | 414, 773, 2083, 2124, 2994, 3253, 3804, 3814 |
| BspCNI | CTCAG | 7 cut(s) | 658, 1902, 1938, 2323, 2637, 2817, 3147 |
| BspFNI | CGCG | 1 cut(s) | 794 |
| BspHI | TCATGA | 2 cut(s) | 658, 2161 |
| BspLI | GGNNCC | 3 cut(s) | 762, 3025, 3265 |
| BspMAI | CTGCAG | 5 cut(s) | 67, 117, 2240, 3312, 3437 |
| BspPI | GGATC | 3 cut(s) | 210, 1342, 2335 |
| BspT104I | TTCGAA | 1 cut(s) | 720 |
| BspT107I | GGYRCC | 1 cut(s) | 3263 |
| BspTI | CTTAAG | 1 cut(s) | 736 |
| BspTNI | GGTCTC | 4 cut(s) | 93, 279, 971, 2930 |
| BsrDI | GCAATG | 3 cut(s) | 333, 1895, 2411 |
| BsrI | ACTGG | 5 cut(s) | 596, 1960, 2541, 2973, 3647 |
| BssECI | CCNNGG | 5 cut(s) | 45, 986, 2062, 2943, 3104 |
| BssNAI | GTATAC | 1 cut(s) | 3863 |
| BssSI | CACGAG | 2 cut(s) | 1215, 3189 |
| BssT1I | CCWWGG | 2 cut(s) | 45, 2943 |
| Bst1107I | GTATAC | 1 cut(s) | 3863 |
| Bst2BI | CACGAG | 2 cut(s) | 1215, 3189 |
| Bst2UI | CCWGG | 4 cut(s) | 621, 988, 2063, 3106 |
| Bst4CI | ACNGT | 8 cut(s) | 487, 910, 1199, 2360, 2519, 3068, 3695, 3767 |
| Bst6I | CTCTTC | 3 cut(s) | 1782, 3183, 3294 |
| BstAFI | CTTAAG | 1 cut(s) | 736 |
| BstBAI | YACGTR | 1 cut(s) | 1622 |
| BstBI | TTCGAA | 1 cut(s) | 720 |
| BstC8I | GCNNGC | 7 cut(s) | 60, 117, 412, 1025, 2206, 2597, 3551 |
| BstFNI | CGCG | 1 cut(s) | 794 |
| BstH2I | RGCGCY | 1 cut(s) | 2459 |
| BstHHI | GCGC | 3 cut(s) | 1161, 2458, 2786 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 224, 501, 2080, 3497, 3506 |
| BstNI | CCWGG | 4 cut(s) | 621, 988, 2063, 3106 |
| BstNSI | RCATGY | 3 cut(s) | 2584, 2660, 3399 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 1926, 3281 |
| BstSCI | CCNGG | 8 cut(s) | 619, 986, 1858, 2061, 2256, 2904, 3030, 3104 |
| BstSFI | CTRYAG | 6 cut(s) | 63, 113, 2236, 2913, 3308, 3433 |
| BstSLI | GKGCMC | 1 cut(s) | 3244 |
| BstUI | CGCG | 1 cut(s) | 794 |
| BstV2I | GAAGAC | 4 cut(s) | 216, 3579, 3675, 3764 |
| BstX2I | RGATCY | 2 cut(s) | 202, 2327 |
| BstYI | RGATCY | 2 cut(s) | 202, 2327 |
| BstZ17I | GTATAC | 1 cut(s) | 3863 |
| BsuI | GTATCC | 1 cut(s) | 718 |
| BsuRI | GGCC | 8 cut(s) | 414, 773, 2083, 2124, 2994, 3253, 3804, 3814 |
| BtgZI | GCGATG | 3 cut(s) | 519, 3330, 3339 |
| BtrI | CACGTC | 3 cut(s) | 110, 1928, 2387 |
| BtsI | GCAGTG | 2 cut(s) | 3097, 3317 |
| BtsIMutI | CAGTG | 3 cut(s) | 2515, 3097, 3317 |
| Cac8I | GCNNGC | 7 cut(s) | 60, 117, 412, 1025, 2206, 2597, 3551 |
| CaiI | CAGNNNCTG | 1 cut(s) | 205 |
| CciI | TCATGA | 2 cut(s) | 658, 2161 |
| CfoI | GCGC | 3 cut(s) | 1161, 2458, 2786 |
| Cfr13I | GGNCC | 3 cut(s) | 3251, 3467, 3803 |
| CseI | GACGC | 2 cut(s) | 276, 800 |
| Csp6I | GTAC | 7 cut(s) | 470, 1124, 1693, 2114, 2899, 3069, 3138 |
| CviQI | GTAC | 7 cut(s) | 470, 1124, 1693, 2114, 2899, 3069, 3138 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2673 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3465 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2673 |
| EaeI | YGGCCR | 1 cut(s) | 412 |
| Eam1104I | CTCTTC | 3 cut(s) | 1782, 3183, 3294 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3465 |
| EarI | CTCTTC | 3 cut(s) | 1782, 3183, 3294 |
| Ecl136II | GAGCTC | 2 cut(s) | 1560, 3484 |
| Eco130I | CCWWGG | 2 cut(s) | 45, 2943 |
| Eco147I | AGGCCT | 3 cut(s) | 773, 2124, 2994 |
| Eco24I | GRGCYC | 2 cut(s) | 1562, 3486 |
| Eco31I | GGTCTC | 4 cut(s) | 93, 279, 971, 2930 |
| Eco32I | GATATC | 1 cut(s) | 836 |
| Eco47I | GGWCC | 1 cut(s) | 3467 |
| Eco53kI | GAGCTC | 2 cut(s) | 1560, 3484 |
| Eco57I | CTGAAG | 1 cut(s) | 3257 |
| Eco88I | CYCGRG | 2 cut(s) | 921, 1555 |
| EcoICRI | GAGCTC | 2 cut(s) | 1560, 3484 |
| EcoRI | GAATTC | 2 cut(s) | 71, 2165 |
| EcoRII | CCWGG | 4 cut(s) | 619, 986, 2061, 3104 |
| EcoRV | GATATC | 1 cut(s) | 836 |
| EcoT14I | CCWWGG | 2 cut(s) | 45, 2943 |
| EcoT22I | ATGCAT | 1 cut(s) | 3493 |
| EcoT38I | GRGCYC | 2 cut(s) | 1562, 3486 |
| ErhI | CCWWGG | 2 cut(s) | 45, 2943 |
| Esp3I | CGTCTC | 1 cut(s) | 3289 |
| FaqI | GGGAC | 1 cut(s) | 2679 |
| FbaI | TGATCA | 2 cut(s) | 561, 1815 |
| FblI | GTMKAC | 4 cut(s) | 156, 3046, 3400, 3862 |
| FriOI | GRGCYC | 2 cut(s) | 1562, 3486 |
| FspI | TGCGCA | 1 cut(s) | 2785 |
| GlaI | GCGC | 3 cut(s) | 1160, 2457, 2785 |
| GsuI | CTGGAG | 1 cut(s) | 475 |
| HaeII | RGCGCY | 1 cut(s) | 2459 |
| HaeIII | GGCC | 8 cut(s) | 414, 773, 2083, 2124, 2994, 3253, 3804, 3814 |
| HapII | CCGG | 9 cut(s) | 764, 1859, 2258, 2681, 2906, 3031, 3042, 3050, 3404 |
| HgaI | GACGC | 2 cut(s) | 276, 800 |
| HhaI | GCGC | 3 cut(s) | 1161, 2458, 2786 |
| Hin6I | GCGC | 3 cut(s) | 1159, 2456, 2784 |
| HinP1I | GCGC | 3 cut(s) | 1159, 2456, 2784 |
| HincII | GTYRAC | 5 cut(s) | 157, 906, 2356, 2742, 3219 |
| HindII | GTYRAC | 5 cut(s) | 157, 906, 2356, 2742, 3219 |
| HindIII | AAGCTT | 2 cut(s) | 138, 2072 |
| HpaI | GTTAAC | 1 cut(s) | 906 |
| HpaII | CCGG | 9 cut(s) | 764, 1859, 2258, 2681, 2906, 3031, 3042, 3050, 3404 |
| Hpy99I | CGWCG | 3 cut(s) | 270, 2391, 3427 |
| HpyCH4III | ACNGT | 8 cut(s) | 487, 910, 1199, 2360, 2519, 3068, 3695, 3767 |
| HpyCH4IV | ACGT | 7 cut(s) | 109, 1464, 1534, 1599, 1621, 1927, 2386 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 224, 501, 2080, 3497, 3506 |
| HpySE526I | ACGT | 7 cut(s) | 109, 1464, 1534, 1599, 1621, 1927, 2386 |
| HspAI | GCGC | 3 cut(s) | 1159, 2456, 2784 |
| Ksp22I | TGATCA | 2 cut(s) | 561, 1815 |
| KspAI | GTTAAC | 1 cut(s) | 906 |
| LmnI | GCTCC | 3 cut(s) | 1069, 2542, 3363 |
| LweI | GCATC | 7 cut(s) | 859, 942, 2795, 2899, 3428, 3478, 3776 |
| MaeII | ACGT | 7 cut(s) | 109, 1464, 1534, 1599, 1621, 1927, 2386 |
| MaeIII | GTNAC | 7 cut(s) | 49, 777, 940, 953, 1465, 1489, 2342 |
| MfeI | CAATTG | 2 cut(s) | 1737, 3222 |
| MflI | RGATCY | 2 cut(s) | 202, 2327 |
| MhlI | GDGCHC | 7 cut(s) | 849, 1066, 1562, 2539, 3244, 3486, 3615 |
| MlyI | GAGTC | 4 cut(s) | 2626, 3139, 3271, 3432 |
| MmeI | TCCRAC | 5 cut(s) | 289, 1375, 1971, 2152, 2751 |
| Mph1103I | ATGCAT | 1 cut(s) | 3493 |
| MroXI | GAANNNNTTC | 5 cut(s) | 311, 1237, 1791, 3022, 3573 |
| MslI | CAYNNNNRTG | 3 cut(s) | 684, 2174, 3618 |
| MspA1I | CMGCKG | 1 cut(s) | 410 |
| MspCI | CTTAAG | 1 cut(s) | 736 |
| MspI | CCGG | 9 cut(s) | 764, 1859, 2258, 2681, 2906, 3031, 3042, 3050, 3404 |
| MspR9I | CCNGG | 8 cut(s) | 621, 988, 1860, 2063, 2258, 2906, 3032, 3106 |
| MunI | CAATTG | 2 cut(s) | 1737, 3222 |
| Mva1269I | GAATGC | 1 cut(s) | 621 |
| MvaI | CCWGG | 4 cut(s) | 621, 988, 2063, 3106 |
| MvnI | CGCG | 1 cut(s) | 794 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 224, 501, 2080, 3497, 3506 |
| NciI | CCSGG | 4 cut(s) | 1860, 2258, 2906, 3032 |
| NlaIV | GGNNCC | 3 cut(s) | 762, 3025, 3265 |
| NmuCI | GTSAC | 4 cut(s) | 49, 940, 953, 2342 |
| NsbI | TGCGCA | 1 cut(s) | 2785 |
| NsiI | ATGCAT | 1 cut(s) | 3493 |
| NspI | RCATGY | 3 cut(s) | 2584, 2660, 3399 |
| NspV | TTCGAA | 1 cut(s) | 720 |
| PaeR7I | CTCGAG | 2 cut(s) | 921, 1555 |
| PagI | TCATGA | 2 cut(s) | 658, 2161 |
| PceI | AGGCCT | 3 cut(s) | 773, 2124, 2994 |
| PciI | ACATGT | 1 cut(s) | 3395 |
| PctI | GAATGC | 1 cut(s) | 621 |
| PdmI | GAANNNNTTC | 5 cut(s) | 311, 1237, 1791, 3022, 3573 |
| PfeI | GAWTC | 9 cut(s) | 662, 752, 1211, 1243, 2158, 2369, 2512, 2707, 3524 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3260 |
| PfoI | TCCNGGA | 1 cut(s) | 2904 |
| PleI | GAGTC | 4 cut(s) | 2626, 3138, 3271, 3432 |
| PpsI | GAGTC | 4 cut(s) | 2626, 3138, 3271, 3432 |
| Ppu21I | YACGTR | 1 cut(s) | 1622 |
| PscI | ACATGT | 1 cut(s) | 3395 |
| PshAI | GACNNNNGTC | 2 cut(s) | 1926, 3281 |
| PsiI | TTATAA | 2 cut(s) | 1752, 2889 |
| Psp124BI | GAGCTC | 2 cut(s) | 1562, 3486 |
| Psp6I | CCWGG | 4 cut(s) | 619, 986, 2061, 3104 |
| PspGI | CCWGG | 4 cut(s) | 619, 986, 2061, 3104 |
| PspN4I | GGNNCC | 3 cut(s) | 762, 3025, 3265 |
| PspPI | GGNCC | 3 cut(s) | 3251, 3467, 3803 |
| PspXI | VCTCGAGB | 2 cut(s) | 921, 1555 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3322, 3354 |
| PstI | CTGCAG | 5 cut(s) | 67, 117, 2240, 3312, 3437 |
| PstNI | CAGNNNCTG | 1 cut(s) | 205 |
| PsuI | RGATCY | 2 cut(s) | 202, 2327 |
| PvuII | CAGCTG | 1 cut(s) | 410 |
| RsaI | GTAC | 7 cut(s) | 471, 1125, 1694, 2115, 2900, 3070, 3139 |
| RsaNI | GTAC | 7 cut(s) | 470, 1124, 1693, 2114, 2899, 3069, 3138 |
| RseI | CAYNNNNRTG | 3 cut(s) | 684, 2174, 3618 |
| SacI | GAGCTC | 2 cut(s) | 1562, 3486 |
| SalI | GTCGAC | 1 cut(s) | 155 |
| Sau96I | GGNCC | 3 cut(s) | 3251, 3467, 3803 |
| ScaI | AGTACT | 1 cut(s) | 471 |
| SchI | GAGTC | 4 cut(s) | 2626, 3139, 3271, 3432 |
| ScrFI | CCNGG | 8 cut(s) | 621, 988, 1860, 2063, 2258, 2906, 3032, 3106 |
| SduI | GDGCHC | 7 cut(s) | 849, 1066, 1562, 2539, 3244, 3486, 3615 |
| SfaNI | GCATC | 7 cut(s) | 859, 942, 2795, 2899, 3428, 3478, 3776 |
| SfcI | CTRYAG | 6 cut(s) | 63, 113, 2236, 2913, 3308, 3433 |
| Sfr274I | CTCGAG | 2 cut(s) | 921, 1555 |
| SfuI | TTCGAA | 1 cut(s) | 720 |
| SinI | GGWCC | 1 cut(s) | 3467 |
| SlaI | CTCGAG | 2 cut(s) | 921, 1555 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 684, 2174, 3618 |
| SmlI | CTYRAG | 9 cut(s) | 456, 736, 921, 1365, 1555, 1589, 2495, 2558, 3554 |
| SmoI | CTYRAG | 9 cut(s) | 456, 736, 921, 1365, 1555, 1589, 2495, 2558, 3554 |
| SpeI | ACTAGT | 1 cut(s) | 1883 |
| SseBI | AGGCCT | 3 cut(s) | 773, 2124, 2994 |
| SsiI | CCGC | 6 cut(s) | 227, 1690, 1825, 1876, 2919, 3361 |
| SspI | AATATT | 2 cut(s) | 1427, 2150 |
| SstI | GAGCTC | 2 cut(s) | 1562, 3486 |
| StuI | AGGCCT | 3 cut(s) | 773, 2124, 2994 |
| StyD4I | CCNGG | 8 cut(s) | 619, 986, 1858, 2061, 2256, 2904, 3030, 3104 |
| StyI | CCWWGG | 2 cut(s) | 45, 2943 |
| TaaI | ACNGT | 8 cut(s) | 487, 910, 1199, 2360, 2519, 3068, 3695, 3767 |
| TaiI | ACGT | 7 cut(s) | 112, 1467, 1537, 1602, 1624, 1930, 2389 |
| TatI | WGTACW | 4 cut(s) | 469, 2113, 2898, 3137 |
| TauI | GCSGC | 1 cut(s) | 1828 |
| TfiI | GAWTC | 9 cut(s) | 662, 752, 1211, 1243, 2158, 2369, 2512, 2707, 3524 |
| TscAI | CASTG | 3 cut(s) | 2522, 3104, 3317 |
| TseFI | GTSAC | 4 cut(s) | 49, 940, 953, 2342 |
| Tsp45I | GTSAC | 4 cut(s) | 49, 940, 953, 2342 |
| TspGWI | ACGGA | 4 cut(s) | 2065, 3200, 3249, 3864 |
| TspRI | CASTG | 3 cut(s) | 2522, 3104, 3317 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3260 |
| Vha464I | CTTAAG | 1 cut(s) | 736 |
| VneI | GTGCAC | 1 cut(s) | 3240 |
| VpaK11BI | GGWCC | 1 cut(s) | 3467 |
| XbaI | TCTAGA | 2 cut(s) | 2893, 3775 |
| XceI | RCATGY | 3 cut(s) | 2584, 2660, 3399 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 994 |
| XhoI | CTCGAG | 2 cut(s) | 921, 1555 |
| XmiI | GTMKAC | 4 cut(s) | 156, 3046, 3400, 3862 |
| XmnI | GAANNNNTTC | 5 cut(s) | 311, 1237, 1791, 3022, 3573 |
| ZrmI | AGTACT | 1 cut(s) | 471 |
| Zsp2I | ATGCAT | 1 cut(s) | 3493 |