RchiOBHm_Chr1g0317761

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
5316734 .. 5320970
4237 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54805

Sequence Viewer

Length: 4047 bp
ATGGCTGAATTTCTCACTTTCGGTGCTCAAGAATTGCTGAAGAAAGTGGCTTCAATGGCCGCTCAAGAGTTCGATCTTGTATGGGGATTCAATGGAGAAATAACAAAGCTGCGTGAGTCTGTGCTTATGCTTGAGGCTGTACTACAAGATGCCGAACATCCGCAACAAGATCAGGGAGAGGCTGTGAAGCTTTGGATGAAGAAGCTTGAAGACATAGCTCAACATGCAGACGATGTGTTGGATGATTATGGATATGAGCTTCTCCGGCGTAAGGTGCAATTGCGAAACCAGATGAAGAAAAAGGTGCAAGATTTTTTTTCCCTCTCCAATCCCATTATATTTCGTGTTAAAATGGCACATAAAATTAAGAAAATCAACACATCTTTGGATGAGTTGAATAAGAAGGCAAGTGCTATTGGCTTAGTTGCTAGACGATCGTTAGATGCAACAACTTCTCATGGTATAAGCATTGATAGGGAAACCTACTCTCTCTTAAAAGAAGATGAAAACAATATCATTGGAAGGGACAATGTTGTGGCGGATATAGTTCAAGCCCTGACCAAATCAAACCACAATCTGGAAAGTGATCTCCCAGTTTTGGCCATTGTGGGTATGGGAGGGCTTGGAAAGACGACTTTGGCTAAATCAATATATCATGAATCTGAGATAAGTAAGCACTTTGAGAAAAAGATGTGGATATGTGTATCTACCCATTTTGAAGTCAATTCAATTCTGAGAGGGATCCTGGAATATCTTAAACCAGAAAATGCTGCAGTGAAAGCTATAGATGCAATATGTAATATTCTCCAAGAAGAGTTGAAAGGAAAGAGATACCTTCTTATACTTGATGATGTATGGAATGAAGATGCTGAAAAATGGAATGATTTGAAGAATTGTTTGCTAAGAATTACCGATGCCCAAGGAAGTAGCATTGTTGTCACTACTCGCAGTGACAAAGTTGCAAAAACGGTGGAGACCCTTCCTAGGTGTGATTTGAGAAAACTATCAGATGATGATTGTTGGCTTATATTGAAGAATAAAGCAGTTCCATTCGGAAGTGTTCCTATACTTGAAGATCAAGAGACAATTGGAAGGGAGATTGCCAAAAAGTGTGGAGGTGTACCATTAGTGGCAAAGGTATTGGGAAACATTATGTGCTCTAAATCGAGCAATGAATGGATTTCAATTATGGAAAATAAAATATGGGATTTACCGGAAGATGAAGAAGACAGAATCATGTCGATTTTAAAGTTGAGTTTTGATGAATTGAAACCTTCAACATTGAAACAATGTTTTGCATACTGTTCAATGTTTGTCAAAGACTCTAGAATGAAAAAGGATGACTTGGTCCAACTTTGGATGGCTCAAGGATGGCTTCACCCCACCAAAAGTAATATGGAGATGGAGGATAGAGGGAACAAATATTTCAACATTTTATCAGAAAAATCCCTTTTTGAAGACGTTAGAACGTATCGTGATGGTAGTGTAAGATGCAAGATGCACGATCTTGTGCATGACCTTGCAGGACAAGTGTCAAACATGGCAAACTGCCGCTCACTATTTTCCAAGGGCGAAGCACTTGGGAAGACCTTGCCTAACTTTAGATCTTTACGTGTGTTAAGTTTATACAACGCAGACATTGACAAGTTGCCGAGTTCAATTGGAAAGTTGACACACTTGAGGTATCTGAATGTTATGAAAACAAGAGTGAAGGCATTTCCAAAATCTATTGGTCAACTTTATTACCTTCAAACGTTTAAAATGCCTTATCATGTTGAAGAGTTCCCAAAGATGATTGCTGATATGATCAACTTGAGACATGTTTATTTTGGTAAACATGCAAAAGTTCCTGTTGGGATATTGGGAAGATTGACAAATCTCAGATCATTACCTTTTCTGAAGGTGGGTAAGGAAACTGGGCCTAGGATTGAGGAACTGGGTGGGTTAAACCATTTGAGAGACACCTTATCCATCTATAATCTGGAGCATGTAAGAGATGAAGAAGAAGCAGTGAATGCAAAGTTAGTTGATAAGAAACGTATACGCAAGTTAACTCTCGACTGGAAGCTTAGTAGACCAAGCAACAATGTTGACGATGAGGATGTTGTACTTGAAGGCCTGCGACCACATTGTAATTTGGAAATTTTGAAGATTCAGGGGTTCATGGGTGTTAAGTTTCCATCATGGTTTTTGGATGCCAACAACTTGAAAGAACTTGAATTAGTAGGCTGCAACAAATGCGAAGGAGTTCCAATACTGGGCCATCTCCCAAATCTCATACATGTTAAGATGAGGAACATGCAGAACTTAAGGTGCTTGGGGTCTGAGTTTTATGGTTACGATCAGATTTCAAGTGCAACAACAAGTGACTGGAGGAAGACTTTGTTTCCTGCTTTGAGATCATTACATATTGAGAATGTCGAGAATCTAATAGATTGGATGGAAGCAGGGGAAGTGATGCTGACAGCAGAAAAATTAAGGGTGTTTCCTTACCTTGAGAAGTTGACCCTGAAGCAGTGTAGGCAATTGAGAAGTGCTCCCAGTCATTTTCCATCTCTCAAGAAGTTGGTGATACGAGGAATGGAAAGTGGCATGCCTATGGCAAGTATTTTAAGCAATAAACTGACTACTCTAACTTATCTCAGAGTATATGATGTCGAGGGACTTACTGGTCTTCCAGAAGGGACTTTAAGAAACAACAAGAATCTTGAATATTTGTATATACACGACTGTCCGGAGTTAAGTTGCATTGCTCCCCATGGATTTGACTGCTGCACATCTCTTCAGGAACTTGAAATTTGGAAGTGTCCTAAGTTAAGGTATTTATCTGATGGGCTACTCCCACTCTCTCTCAAGGAGTTGGACATACAAGATTGCTCAAGTCTAGAGTCCATTCCAATCATCCCTGAGCAAGGCAGTCTCCCATCTCTGCGCAAATTGTCTATATCCAAGTGTTCTCAATTATCCAGTTTACCTGATGGGCTACAATACTGCACATCTCTTCAACAACTGGACATAAAGAGCTGCCCAAAGGTAACGTCCATTCCAGCCCAATATTGCACATCTCTTCAAGAACTGAAAATATCGGGTTGCCCAGAGATAACGTCCATTCCAATTCCATCTGAGGGCCTCCCGTCCCTTGGTCGACTGGCGCTTTCTCGATGTCCTGAATTATCAAGCCTACCGAGTGGACTAGGCTGCTGCACCTCTCTTGTTGATTTGTTGATAACAAAGTGCCCTAAGGTAACATCCATTCCAATTGGCACTCTCAGTACAACCCTCCGAGACTTGTGTGTAGATAATCCAGAGTCTCTTCCAATTTTACACGGCGGCTTCACATCCCTCCTTGAATTGGAAATTGTGGGATGTCAAAGTACACAAATTGATCTGCAATTTTGTGCCTTTCTTCAAAACCTCGTCTCTCTTGAGGTGTTGAGAATAACAGAGTGTCCTAATCTAGAGAGTGTTCTGAGTTTAGACAAGCTCACATTCCTCCGCAGATTGGAGATTGTTCGATGTTCCAAATTAACATGTCTACCCAGTGGGTTAGCAATGACATCCCCACACGTATTTACCCATCTCAAGTCCATGGCTATTGGTCAGTTTTGGAACGAGCTGGATTCATTCCCGGCTCTTCAGGTTCTACCACAACTTGAAAGATTGACGATCTGCGGGTGGCCGAAGCTCAAGTCTCTGCCTAAACAAATTCAACACTTGACGTCTTTGACCCGTTTGTGGATACGTTGCTTTGAGGGAGTGGAGGCTATTCCAGAATGGTTGGGAAACCTTGCATCACTTCACACCTTACAAATTTGGAGTTGCAAGAATCTGATGTATCTACCTTCTGTCCAAGCTATGCAATGCCTCACCAAATTAGATTCACTGCATATCTCCAATTGTCCCCTTTTGAGCGAAAGATGCATCGCGGAGAGAGGCCCAGAGTGGCCTAAGATTTCTCATATTCCAGCAATCAATGGTAACTCTTTCCTCTACCTCTTTTCTGAATCGGTCGATATTCATATCACTTTAATTATATTAGTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

1348

Amino Acids

152.22

Weight (kDa)

7.01

Isoelectric Point (pI)

47.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 11 - 97 1.6e-20 Rx N-terminal domain
NB-ARC PF00931 179 - 349 1.6e-35 NB-ARC domain
WHD_DRP PF23559 437 - 508 9.6e-22 Disease resistance protein Winged helix domain
LRR_14 PF23598 520 - 859 7.5e-32 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 643 - 767 2.8e-35 R13L1/DRL21 LRRs
LRR_RPS2 PF23247 923 - 1029 7.4e-06 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_14 PF23598 1216 - 1299 1.9e-06 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 1235 - 1297 1.7e-06 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000029)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13530 FvH4_4g18270 FvH4_6g12200 FvH4_6g12460 FvH4_6g12461 FvH4_6g13450 FvH4_6g15090 FvH4_6g15220 FvH4_6g15230 FvH4_6g15250 FvH4_6g15251 FvH4_6g15340 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47980 FvH4_6g47980 FvH4_6g47980 FvH4_6g48170 FvH4_6g48310 FvH4_6g48310 FvH4_6g48850 FvH4_6g48881 FvH4_7g11830
malus_domestica MD02G1059900.v1.1 MD02G1069600.v1.1 MD02G1069700.v1.1 MD02G1070100.v1.1 MD02G1070200.v1.1 MD02G1070300.v1.1 MD02G1070800.v1.1 MD02G1070900.v1.1 MD02G1071200.v1.1 MD02G1071400.v1.1 MD02G1071900.v1.1 MD02G1075200.v1.1 MD03G1048000.v1.1 MD03G1049100.v1.1 MD03G1049200.v1.1 MD03G1052500.v1.1 MD03G1054100.v1.1 MD03G1054300.v1.1 MD03G1054400.v1.1 MD04G1113400.v1.1 MD04G1211100.v1.1 MD04G1211200.v1.1 MD05G1174900.v1.1 MD05G1175000.v1.1 MD05G1175900.v1.1 MD05G1243400.v1.1 MD07G1031500.v1.1 MD07G1031600.v1.1 MD07G1032500.v1.1 MD11G1046800.v1.1 MD11G1046900.v1.1 MD11G1047000.v1.1 MD11G1050400.v1.1 MD11G1050600.v1.1 MD11G1050800.v1.1 MD11G1051100.v1.1 MD11G1051600.v1.1 MD11G1051700.v1.1 MD11G1054600.v1.1 MD11G1055600.v1.1 MD11G1055700.v1.1 MD11G1055800.v1.1 MD11G1056000.v1.1 MD12G1126600.v1.1 MD12G1126700.v1.1 MD12G1126800.v1.1 MD12G1127300.v1.1 MD12G1127600.v1.1 MD12G1127900.v1.1 MD12G1128100.v1.1 MD12G1128300.v1.1 MD15G1261500.v1.1
prunus_persica Prupe.1G010700_v2.0.a1 Prupe.1G010800_v2.0.a1 Prupe.1G011000_v2.0.a1 Prupe.1G159600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163700_v2.0.a1 Prupe.1G163700_v2.0.a1 Prupe.1G163800_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G235500_v2.0.a1 Prupe.2G067400_v2.0.a1 Prupe.2G067500_v2.0.a1 Prupe.2G111700_v2.0.a1 Prupe.2G111800_v2.0.a1 Prupe.3G012000_v2.0.a1 Prupe.6G243400_v2.0.a1 Prupe.6G243500_v2.0.a1 Prupe.6G243600_v2.0.a1 Prupe.6G243700_v2.0.a1 Prupe.6G243800_v2.0.a1 Prupe.6G243900_v2.0.a1
pyrus_communis pycom02g04860 pycom02g04880 pycom02g04890 pycom02g05510 pycom02g05520 pycom02g05600 pycom02g05930 pycom02g06000 pycom02g06010 pycom03g03800 pycom03g03860 pycom03g03880 pycom03g03890 pycom03g03910 pycom03g03920 pycom03g04200 pycom03g04290 pycom03g04300 pycom03g04310 pycom03g04320 pycom03g09260 pycom04g10150 pycom04g10160 pycom04g10170 pycom05g16180 pycom05g16190 pycom05g16240 pycom05g21980 pycom05g21990 pycom07g02280 pycom11g03800 pycom11g03810 pycom11g04080 pycom11g04140 pycom11g04150 pycom11g04160 pycom11g04570 pycom11g04580 pycom11g04590 pycom11g04610 pycom12g12470 pycom12g12490 pycom13g22050
rosa_chinensis RchiOBHm_Chr1g0317761 RchiOBHm_Chr1g0317821 RchiOBHm_Chr1g0317831 RchiOBHm_Chr1g0317871 RchiOBHm_Chr1g0350501 RchiOBHm_Chr2g0107631 RchiOBHm_Chr3g0452091 RchiOBHm_Chr3g0464001 RchiOBHm_Chr3g0464281 RchiOBHm_Chr3g0466331 RchiOBHm_Chr3g0467341 RchiOBHm_Chr3g0467381 RchiOBHm_Chr3g0467731 RchiOBHm_Chr3g0468291 RchiOBHm_Chr3g0468321 RchiOBHm_Chr3g0468341 RchiOBHm_Chr3g0468391 RchiOBHm_Chr3g0468411 RchiOBHm_Chr3g0468571 RchiOBHm_Chr3g0468591 RchiOBHm_Chr3g0490721 RchiOBHm_Chr3g0490751 RchiOBHm_Chr3g0490761 RchiOBHm_Chr3g0490771 RchiOBHm_Chr3g0490951 RchiOBHm_Chr3g0491001 RchiOBHm_Chr3g0491011 RchiOBHm_Chr4g0412461 RchiOBHm_Chr4g0414161 RchiOBHm_Chr4g0414181 RchiOBHm_Chr4g0414191 RchiOBHm_Chr4g0414281 RchiOBHm_Chr4g0414441 RchiOBHm_Chr4g0414521 RchiOBHm_Chr4g0414531 RchiOBHm_Chr4g0417011 RchiOBHm_Chr4g0417021 RchiOBHm_Chr4g0417041 RchiOBHm_Chr4g0417071 RchiOBHm_Chr4g0417101 RchiOBHm_Chr4g0417531 RchiOBHm_Chr4g0417641 RchiOBHm_Chr4g0417651 RchiOBHm_Chr4g0417701 RchiOBHm_Chr4g0417731 RchiOBHm_Chr4g0417741 RchiOBHm_Chr4g0417781 RchiOBHm_Chr4g0418751 RchiOBHm_Chr4g0418791 RchiOBHm_Chr4g0418861 RchiOBHm_Chr4g0418881 RchiOBHm_Chr4g0418901 RchiOBHm_Chr4g0422451 RchiOBHm_Chr4g0422461 RchiOBHm_Chr4g0422471 RchiOBHm_Chr4g0422541 RchiOBHm_Chr4g0422561 RchiOBHm_Chr4g0422591 RchiOBHm_Chr4g0422651 RchiOBHm_Chr4g0422661 RchiOBHm_Chr5g0003251 RchiOBHm_Chr5g0003261 RchiOBHm_Chr5g0055871 RchiOBHm_Chr7g0204701 RchiOBHm_Chr7g0204741
rosa_laevigata RLG00000007607 RLG00000007932 RLG00000017606 RLG00000024418 RLG00000025629 RLG00000030586
rosa_multiflora Rmu_co7959167.1_g000001 Rmu_co8021330.1_g000001 Rmu_co8132128.1_g000001 Rmu_co8224744.1_g000001 Rmu_co8281865.1_g000001 Rmu_co8298487.1_g000001 Rmu_co8319035.1_g000001 Rmu_co8380035.1_g000001 Rmu_co8385371.1_g000001 Rmu_co8398173.1_g000001 Rmu_co8423363.1_g000001 Rmu_co8438275.1_g000001 Rmu_co8474729.1_g000001 Rmu_sc0000057.1_g000008 Rmu_sc0000350.1_g000023 Rmu_sc0000480.1_g000005 Rmu_sc0000654.1_g000021 Rmu_sc0000654.1_g000029 Rmu_sc0000654.1_g000032 Rmu_sc0000654.1_g000041 Rmu_sc0000654.1_g000045 Rmu_sc0000772.1_g000002 Rmu_sc0000772.1_g000041 Rmu_sc0000808.1_g000040 Rmu_sc0000830.1_g000062 Rmu_sc0000830.1_g000065 Rmu_sc0000830.1_g000072 Rmu_sc0000830.1_g000073 Rmu_sc0000935.1_g000020 Rmu_sc0000935.1_g000024 Rmu_sc0000935.1_g000026 Rmu_sc0000935.1_g000027 Rmu_sc0000935.1_g000031 Rmu_sc0000935.1_g000033 Rmu_sc0000962.1_g000033 Rmu_sc0000962.1_g000036 Rmu_sc0000962.1_g000063 Rmu_sc0000962.1_g000064 Rmu_sc0000962.1_g000065 Rmu_sc0001029.1_g000007 Rmu_sc0001063.1_g000014 Rmu_sc0001149.1_g000010 Rmu_sc0001149.1_g000011 Rmu_sc0001358.1_g000009 Rmu_sc0001448.1_g000003 Rmu_sc0001448.1_g000004 Rmu_sc0001729.1_g000005 Rmu_sc0001729.1_g000007 Rmu_sc0001729.1_g000020 Rmu_sc0001729.1_g000023 Rmu_sc0001793.1_g000015 Rmu_sc0002494.1_g000018 Rmu_sc0002494.1_g000019 Rmu_sc0002604.1_g000022 Rmu_sc0002922.1_g000011 Rmu_sc0003008.1_g000009 Rmu_sc0003221.1_g000061 Rmu_sc0003221.1_g000062 Rmu_sc0003459.1_g000014 Rmu_sc0003480.1_g000015 Rmu_sc0003541.1_g000016 Rmu_sc0003541.1_g000020 Rmu_sc0004035.1_g000001 Rmu_sc0004035.1_g000005 Rmu_sc0004035.1_g000011 Rmu_sc0004142.1_g000004 Rmu_sc0004142.1_g000010 Rmu_sc0004353.1_g000008 Rmu_sc0004616.1_g000009 Rmu_sc0004616.1_g000010 Rmu_sc0005231.1_g000004 Rmu_sc0006380.1_g000025 Rmu_sc0006492.1_g000010 Rmu_sc0006895.1_g000001 Rmu_sc0006895.1_g000002 Rmu_sc0006895.1_g000005 Rmu_sc0007034.1_g000004 Rmu_sc0007104.1_g000006 Rmu_sc0008990.1_g000003 Rmu_sc0008990.1_g000004 Rmu_sc0009106.1_g000003 Rmu_sc0009516.1_g000002 Rmu_sc0009516.1_g000003 Rmu_sc0009516.1_g000004 Rmu_sc0009516.1_g000005 Rmu_sc0009645.1_g000001 Rmu_sc0010274.1_g000001 Rmu_sc0010274.1_g000002 Rmu_sc0010419.1_g000003 Rmu_sc0010917.1_g000017 Rmu_sc0011213.1_g000001 Rmu_sc0011228.1_g000007 Rmu_sc0011538.1_g000011 Rmu_sc0011538.1_g000014 Rmu_sc0011538.1_g000015 Rmu_sc0012211.1_g000006 Rmu_sc0012351.1_g000003 Rmu_sc0012351.1_g000005 Rmu_sc0012915.1_g000002 Rmu_sc0013088.1_g000001 Rmu_sc0013459.1_g000001 Rmu_sc0013765.1_g000004 Rmu_sc0013765.1_g000005 Rmu_sc0014003.1_g000012 Rmu_sc0014003.1_g000014 Rmu_sc0014698.1_g000001 Rmu_sc0015740.1_g000001 Rmu_sc0016429.1_g000003 Rmu_sc0018885.1_g000001 Rmu_sc0020345.1_g000001 Rmu_sc0027791.1_g000001 Rmu_sc0037325.1_g000001 Rmu_ssc0000010.1_g000024 Rmu_ssc0000010.1_g000025 Rmu_ssc0000083.1_g000021 Rmu_ssc0000340.1_g000002 Rmu_ssc0000386.1_g000002 Rmu_ssc0000386.1_g000024 Rmu_ssc0000386.1_g000025 Rmu_ssc0000386.1_g000034 Rmu_ssc0000386.1_g000037 Rmu_ssc0000477.1_g000001
rosa_roxburghii Rroxscaffold_161G00448010 Rroxscaffold_164G00436080 Rroxscaffold_1G00024500 Rroxscaffold_2G00124290 Rroxscaffold_3G00222940 Rroxscaffold_3G00227440 Rroxscaffold_4G00304810 Rroxscaffold_4G00330180 Rroxscaffold_4G00330200 Rroxscaffold_5G00356620 Rroxscaffold_5G00358170 Rroxscaffold_5G00360880 Rroxscaffold_5G00361220 Rroxscaffold_5G00361950 Rroxscaffold_5G00361960 Rroxscaffold_5G00361990 Rroxscaffold_5G00362370 Rroxscaffold_5G00364540 Rroxscaffold_5G00364550 Rroxscaffold_5G00364580 Rroxscaffold_5G00364600 Rroxscaffold_6G00393290 Rroxscaffold_6G00412680 Rroxscaffold_6G00412790 Rroxscaffold_6G00413470 Rroxscaffold_6G00413720 Rroxscaffold_6G00416070 Rroxscaffold_7G00205400
rosa_rugosa Rorug01G0017300 Rorug01G0017400 Rorug01G0018000 Rorug01G0018100 Rorug01G0211500 Rorug02G0638200 Rorug03G0070000 Rorug03G0071200 Rorug03G0081000 Rorug03G0086500 Rorug03G0089300 Rorug03G0095300 Rorug03G0096000 Rorug03G0096000 Rorug04G0055000 Rorug04G0078300 Rorug04G0104100.1 Rorug04G0113800 Rorug04G0126700 Rorug04G0128000 Rorug04G0145900 Rorug04G0148700 Rorug04G0149100 Rorug04G0149100 Rorug04G0149200 Rorug04G0149300 Rorug04G0154900 Rorug04G0180400 Rorug04G0180500 Rorug04G0180700 Rorug04G0180800 Rorug04G0401500 Rorug04G0402100 Rorug05G0288600 Rorug05G0334100 Rorug07G0176400
rosa_samantha Rh1DG043200 Rh1DG043500 Rh1DG043900 Rh1DG222800 Rh3CG039900 Rh3CG156200 Rh3CG328500 Rh3CG328800 Rh3DG165000 Rh4AG208400 Rh4BG205600 Rh4BG213900 Rh4BG243900 Rh4CG198800 Rh4DG168600 Rh4DG180100 Rh4DG180300 Rh4DG180600 Rh4DG181200 Rh4DG181600 Rh4DG181700 Rh4DG183700 Rh4DG184000 Rh4DG184400 Rh4DG184700 Rh4DG206100 Rh4DG206200 Rh4DG206300 Rh4DG215600 Rh4DG238700 Rh4DG238900 Rh5DG390300
rosa_wichuraiana Rw0G005050 Rw0G009260 Rw0G009280 Rw0G015600 Rw0G023570 Rw1G002140 Rw1G002170 Rw1G002210 Rw1G002240 Rw1G019500 Rw2G015490 Rw3G003020 Rw3G010900 Rw3G012030 Rw3G012790 Rw3G013050 Rw3G013540 Rw3G013640 Rw3G013650 Rw3G026050 Rw3G026070 Rw4G015740 Rw4G015790 Rw4G015910 Rw4G015930 Rw4G015950 Rw4G017900 Rw4G017930 Rw4G018440 Rw4G018450 Rw4G018530 Rw4G020720 Rw4G020760 Rw5G019250 Rw5G034370 Rw7G018700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2670
AatII GACGTC 1 cut(s) 3722
Acc16I TGCGCA 1 cut(s) 2933
AccB7I CCANNNNNTGG 1 cut(s) 577
AccBSI CCGCTC 2 cut(s) 62, 1554
AccI GTMKAC 4 cut(s) 2041, 2074, 3145, 3535
AccII CGCG 1 cut(s) 3926
AccIII TCCGGA 1 cut(s) 2734
AciI CCGC 8 cut(s) 60, 161, 539, 1552, 3330, 3496, 3672, 3926
AclI AACGTT 1 cut(s) 1754
AclWI GGATC 2 cut(s) 736, 749
AcoI YGGCCR 3 cut(s) 57, 600, 3677
AcsI RAATTY 5 cut(s) 8, 2142, 2796, 3705, 3810
AcuI CTGAAG 5 cut(s) 59, 1919, 2531, 2768, 3620
AcyI GRCGYC 1 cut(s) 3719
AfaI GTAC 5 cut(s) 141, 1122, 2109, 3274, 3376
AflII CTTAAG 1 cut(s) 2308
AflIII ACRYGT 5 cut(s) 1612, 1819, 2281, 3530, 3565
AjnI CCWGG 1 cut(s) 744
Alw21I GWGCWC 3 cut(s) 28, 1160, 2539
Alw26I GTCTC 9 cut(s) 968, 1076, 1810, 1953, 2924, 3279, 3315, 3424, 3696
AlwI GGATC 2 cut(s) 736, 749
Aor13HI TCCGGA 1 cut(s) 2734
AoxI GGCC 9 cut(s) 57, 600, 1919, 2116, 2260, 3127, 3677, 3934, 3944
ApeKI GCWGC 7 cut(s) 109, 770, 2229, 2772, 3024, 3198, 3201
ApoI RAATTY 5 cut(s) 8, 2142, 2796, 3705, 3810
ArsI GACNNNNNNTTYG 4 cut(s) 3023, 3055, 3674, 3706
Asp700I GAANNNNTTC 1 cut(s) 2247
AspA2I CCTAGG 2 cut(s) 983, 1922
AspLEI GCGC 2 cut(s) 2934, 3154
AspS9I GGNCC 5 cut(s) 1348, 1919, 2260, 3127, 3935
AsuC2I CCSGG 1 cut(s) 3629
AsuHPI GGTGA 3 cut(s) 1370, 2581, 3859
AvaII GGWCC 1 cut(s) 1348
AvrII CCTAGG 2 cut(s) 983, 1922
AxyI CCTNAGG 1 cut(s) 3240
BaeGI GKGCMC 1 cut(s) 3239
BalI TGGCCA 1 cut(s) 602
BamHI GGATCC 1 cut(s) 741
BbsI GAAGAC 6 cut(s) 216, 1233, 1464, 1592, 2384, 2666
Bbv12I GWGCWC 3 cut(s) 28, 1160, 2539
BbvI GCAGC 7 cut(s) 96, 757, 2216, 2759, 3011, 3185, 3188
BceAI ACGGC 1 cut(s) 3343
BciT130I CCWGG 1 cut(s) 746
BciVI GTATCC 1 cut(s) 3732
BclI TGATCA 1 cut(s) 1806
BcnI CCSGG 1 cut(s) 3629
BcoDI GTCTC 9 cut(s) 968, 1076, 1810, 1953, 2924, 3279, 3315, 3424, 3696
BfaI CTAG 7 cut(s) 429, 984, 1326, 1923, 2885, 3194, 3458
BfmI CTRYAG 2 cut(s) 771, 783
BfoI RGCGCY 1 cut(s) 3155
BfrI CTTAAG 1 cut(s) 2308
BfuI GTATCC 1 cut(s) 3732
BglII AGATCT 1 cut(s) 1604
BlnI CCTAGG 2 cut(s) 983, 1922
Bme1390I CCNGG 2 cut(s) 746, 3629
Bme18I GGWCC 1 cut(s) 1348
BmgT120I GGNCC 5 cut(s) 1348, 1919, 2260, 3127, 3935
BmiI GGNNCC 1 cut(s) 743
BmrFI CCNGG 2 cut(s) 746, 3629
BmrI ACTGGG 6 cut(s) 587, 1926, 1946, 2267, 2535, 3534
BmuI ACTGGG 6 cut(s) 587, 1926, 1946, 2267, 2535, 3534
BoxI GACNNNNGTC 1 cut(s) 1531
BpiI GAAGAC 6 cut(s) 216, 1233, 1464, 1592, 2384, 2666
BplI GAGNNNNNCTC 2 cut(s) 2521, 2553
BpmI CTGGAG 2 cut(s) 2003, 2392
Bpu10I CCTNAGC 1 cut(s) 2907
BpuMI CCSGG 1 cut(s) 3629
BsaAI YACGTR 2 cut(s) 1613, 3568
BsaHI GRCGYC 1 cut(s) 3719
BsaI GGTCTC 1 cut(s) 968
BsaJI CCNNGG 7 cut(s) 919, 983, 1566, 1922, 2758, 3139, 3588
BsaWI WCCGGW 2 cut(s) 1213, 2734
BsaXI ACNNNNNCTCC 2 cut(s) 168, 198
Bse21I CCTNAGG 1 cut(s) 3240
Bse3DI GCAATG 4 cut(s) 1177, 2748, 3558, 3866
BseAI TCCGGA 1 cut(s) 2734
BseBI CCWGG 1 cut(s) 746
BseDI CCNNGG 7 cut(s) 919, 983, 1566, 1922, 2758, 3139, 3588
BseMI GCAATG 4 cut(s) 1177, 2748, 3558, 3866
BseMII CTCAG 9 cut(s) 654, 725, 1894, 2316, 2656, 2898, 3114, 3283, 3461
BseSI GKGCMC 1 cut(s) 3239
BseXI GCAGC 7 cut(s) 96, 757, 2216, 2759, 3011, 3185, 3188
BsgI GTGCAG 3 cut(s) 2758, 2977, 3187
Bsh1236I CGCG 1 cut(s) 3926
Bsh1285I CGRYCG 2 cut(s) 437, 4011
BshFI GGCC 9 cut(s) 59, 602, 1921, 2118, 2262, 3129, 3679, 3936, 3946
BsiEI CGRYCG 2 cut(s) 437, 4011
BsiHKAI GWGCWC 3 cut(s) 28, 1160, 2539
BsiSI CCGG 4 cut(s) 265, 1214, 2735, 3629
BslFI GGGAC 5 cut(s) 539, 2676, 2698, 3121, 3885
BsmAI GTCTC 9 cut(s) 968, 1076, 1810, 1953, 2924, 3279, 3315, 3424, 3696
BsmBI CGTCTC 1 cut(s) 3424
BsmFI GGGAC 5 cut(s) 539, 2676, 2698, 3121, 3885
BsmI GAATGC 1 cut(s) 2020
BsnI GGCC 9 cut(s) 59, 602, 1921, 2118, 2262, 3129, 3679, 3936, 3946
Bso31I GGTCTC 1 cut(s) 968
Bsp1286I GDGCHC 4 cut(s) 28, 1160, 2539, 3239
Bsp13I TCCGGA 1 cut(s) 2734
Bsp19I CCATGG 2 cut(s) 2758, 3588
BspACI CCGC 8 cut(s) 60, 161, 539, 1552, 3330, 3496, 3672, 3926
BspANI GGCC 9 cut(s) 59, 602, 1921, 2118, 2262, 3129, 3679, 3936, 3946
BspCNI CTCAG 9 cut(s) 655, 726, 1893, 2317, 2655, 2899, 3115, 3282, 3462
BspEI TCCGGA 1 cut(s) 2734
BspFNI CGCG 1 cut(s) 3926
BspHI TCATGA 1 cut(s) 655
BspLI GGNNCC 1 cut(s) 743
BspMAI CTGCAG 1 cut(s) 775
BspPI GGATC 2 cut(s) 736, 749
BspQI GCTCTTC 1 cut(s) 3639
BspTI CTTAAG 1 cut(s) 2308
BspTNI GGTCTC 1 cut(s) 968
BsrBI CCGCTC 2 cut(s) 62, 1554
BsrDI GCAATG 4 cut(s) 1177, 2748, 3558, 3866
BssECI CCNNGG 7 cut(s) 919, 983, 1566, 1922, 2758, 3139, 3588
BssNAI GTATAC 1 cut(s) 2042
BssNI GRCGYC 1 cut(s) 3719
BssT1I CCWWGG 7 cut(s) 919, 983, 1566, 1922, 2758, 3139, 3588
Bst1107I GTATAC 1 cut(s) 2042
Bst2UI CCWGG 1 cut(s) 746
Bst4CI ACNGT 3 cut(s) 970, 1304, 2732
Bst6I CTCTTC 7 cut(s) 807, 1773, 2787, 3006, 3072, 3318, 3639
BstACI GRCGYC 1 cut(s) 3719
BstAFI CTTAAG 1 cut(s) 2308
BstAPI GCANNNNNTGC 2 cut(s) 2015, 2238
BstBAI YACGTR 2 cut(s) 1613, 3568
BstC8I GCNNGC 2 cut(s) 2120, 2594
BstDSI CCRYGG 2 cut(s) 2758, 3588
BstENI CCTNNNNNAGG 1 cut(s) 2910
BstFNI CGCG 1 cut(s) 3926
BstH2I RGCGCY 1 cut(s) 3155
BstHHI GCGC 2 cut(s) 2934, 3154
BstMAI GTCTC 9 cut(s) 968, 1076, 1810, 1953, 2924, 3279, 3315, 3424, 3696
BstMCI CGRYCG 2 cut(s) 437, 4011
BstNI CCWGG 1 cut(s) 746
BstNSI RCATGY 8 cut(s) 227, 1823, 1841, 1991, 2285, 2302, 2596, 3534
BstPAI GACNNNNGTC 1 cut(s) 1531
BstSCI CCNGG 2 cut(s) 744, 3627
BstSFI CTRYAG 2 cut(s) 771, 783
BstSLI GKGCMC 1 cut(s) 3239
BstUI CGCG 1 cut(s) 3926
BstV1I GCAGC 7 cut(s) 96, 757, 2216, 2759, 3011, 3185, 3188
BstV2I GAAGAC 6 cut(s) 216, 1233, 1464, 1592, 2384, 2666
BstX2I RGATCY 2 cut(s) 741, 1604
BstYI RGATCY 2 cut(s) 741, 1604
BstZ17I GTATAC 1 cut(s) 2042
Bsu36I CCTNAGG 1 cut(s) 3240
BsuI GTATCC 1 cut(s) 3732
BsuRI GGCC 9 cut(s) 59, 602, 1921, 2118, 2262, 3129, 3679, 3936, 3946
BtgI CCRYGG 2 cut(s) 2758, 3588
BtgZI GCGATG 1 cut(s) 3907
BtsI GCAGTG 5 cut(s) 780, 955, 2016, 2522, 3881
BtsIMutI CAGTG 6 cut(s) 780, 955, 2016, 2522, 3547, 3881
Cac8I GCNNGC 2 cut(s) 2120, 2594
CciI TCATGA 1 cut(s) 655
CfoI GCGC 2 cut(s) 2934, 3154
Cfr13I GGNCC 5 cut(s) 1348, 1919, 2260, 3127, 3935
Csp6I GTAC 5 cut(s) 140, 1121, 2108, 3273, 3375
CspCI CAANNNNNGTGG 4 cut(s) 951, 986, 1093, 1128
CviQI GTAC 5 cut(s) 140, 1121, 2108, 3273, 3375
DraI TTTAAA 2 cut(s) 1248, 1759
DrdI GACNNNNNNGTC 1 cut(s) 2670
DseDI GACNNNNNNGTC 1 cut(s) 2670
EaeI YGGCCR 3 cut(s) 57, 600, 3677
Eam1104I CTCTTC 7 cut(s) 807, 1773, 2787, 3006, 3072, 3318, 3639
EarI CTCTTC 7 cut(s) 807, 1773, 2787, 3006, 3072, 3318, 3639
EciI GGCGGA 1 cut(s) 554
Eco130I CCWWGG 7 cut(s) 919, 983, 1566, 1922, 2758, 3139, 3588
Eco147I AGGCCT 1 cut(s) 2118
Eco31I GGTCTC 1 cut(s) 968
Eco47I GGWCC 1 cut(s) 1348
Eco57I CTGAAG 5 cut(s) 59, 1919, 2531, 2768, 3620
Eco81I CCTNAGG 1 cut(s) 3240
EcoNI CCTNNNNNAGG 1 cut(s) 2910
EcoO109I RGGNCCY 1 cut(s) 3127
EcoRII CCWGG 1 cut(s) 744
EcoT14I CCWWGG 7 cut(s) 919, 983, 1566, 1922, 2758, 3139, 3588
EcoT22I ATGCAT 1 cut(s) 3923
ErhI CCWWGG 7 cut(s) 919, 983, 1566, 1922, 2758, 3139, 3588
Esp3I CGTCTC 1 cut(s) 3424
FalI AAGNNNNNCTT 4 cut(s) 1328, 1360, 1359, 1391
FaqI GGGAC 5 cut(s) 539, 2676, 2698, 3121, 3885
FauI CCCGC 1 cut(s) 3665
FbaI TGATCA 1 cut(s) 1806
FblI GTMKAC 4 cut(s) 2041, 2074, 3145, 3535
FspBI CTAG 7 cut(s) 429, 984, 1326, 1923, 2885, 3194, 3458
FspI TGCGCA 1 cut(s) 2933
GlaI GCGC 2 cut(s) 2933, 3153
GsuI CTGGAG 2 cut(s) 2003, 2392
HaeII RGCGCY 1 cut(s) 3155
HaeIII GGCC 9 cut(s) 59, 602, 1921, 2118, 2262, 3129, 3679, 3936, 3946
HapII CCGG 4 cut(s) 265, 1214, 2735, 3629
HhaI GCGC 2 cut(s) 2934, 3154
Hin1I GRCGYC 1 cut(s) 3719
Hin6I GCGC 2 cut(s) 2932, 3152
HinP1I GCGC 2 cut(s) 2932, 3152
HincII GTYRAC 6 cut(s) 1671, 1736, 2052, 2092, 2505, 3146
HindII GTYRAC 6 cut(s) 1671, 1736, 2052, 2092, 2505, 3146
HindIII AAGCTT 3 cut(s) 188, 203, 2066
HpaI GTTAAC 1 cut(s) 2052
HpaII CCGG 4 cut(s) 265, 1214, 2735, 3629
HphI GGTGA 3 cut(s) 1370, 2581, 3859
HpyCH4III ACNGT 3 cut(s) 970, 1304, 2732
Hsp92I GRCGYC 1 cut(s) 3719
HspAI GCGC 2 cut(s) 2932, 3152
Kpn2I TCCGGA 1 cut(s) 2734
Ksp22I TGATCA 1 cut(s) 1806
KspAI GTTAAC 1 cut(s) 2052
LguI GCTCTTC 1 cut(s) 3639
LmnI GCTCC 3 cut(s) 1984, 2542, 2758
Lsp1109I GCAGC 7 cut(s) 96, 757, 2216, 2759, 3011, 3185, 3188
MaeI CTAG 7 cut(s) 429, 984, 1326, 1923, 2885, 3194, 3458
MaeIII GTNAC 7 cut(s) 937, 950, 2336, 2366, 3034, 3244, 3977
MbiI CCGCTC 2 cut(s) 62, 1554
MfeI CAATTG 6 cut(s) 278, 1086, 1659, 2525, 3258, 3895
MflI RGATCY 2 cut(s) 741, 1604
MhlI GDGCHC 4 cut(s) 28, 1160, 2539, 3239
MlsI TGGCCA 1 cut(s) 602
MluNI TGGCCA 1 cut(s) 602
MlyI GAGTC 4 cut(s) 125, 1316, 2897, 3317
MmeI TCCRAC 3 cut(s) 219, 1375, 2841
Mox20I TGGCCA 1 cut(s) 602
Mph1103I ATGCAT 1 cut(s) 3923
MroI TCCGGA 1 cut(s) 2734
MroXI GAANNNNTTC 1 cut(s) 2247
MscI TGGCCA 1 cut(s) 602
MslI CAYNNNNRTG 1 cut(s) 2597
Msp20I TGGCCA 1 cut(s) 602
MspCI CTTAAG 1 cut(s) 2308
MspI CCGG 4 cut(s) 265, 1214, 2735, 3629
MspR9I CCNGG 2 cut(s) 746, 3629
MunI CAATTG 6 cut(s) 278, 1086, 1659, 2525, 3258, 3895
Mva1269I GAATGC 1 cut(s) 2020
MvaI CCWGG 1 cut(s) 746
MvnI CGCG 1 cut(s) 3926
NciI CCSGG 1 cut(s) 3629
NcoI CCATGG 2 cut(s) 2758, 3588
NlaIV GGNNCC 1 cut(s) 743
NmeAIII GCCGAG 1 cut(s) 1677
NmuCI GTSAC 3 cut(s) 937, 950, 2366
NsbI TGCGCA 1 cut(s) 2933
NsiI ATGCAT 1 cut(s) 3923
NspI RCATGY 8 cut(s) 227, 1823, 1841, 1991, 2285, 2302, 2596, 3534
PaeI GCATGC 1 cut(s) 2596
PagI TCATGA 1 cut(s) 655
PceI AGGCCT 1 cut(s) 2118
PciI ACATGT 3 cut(s) 1819, 2281, 3530
PciSI GCTCTTC 1 cut(s) 3639
PctI GAATGC 1 cut(s) 2020
PdmI GAANNNNTTC 1 cut(s) 2247
PflFI GACNNNGTC 1 cut(s) 1346
PflMI CCANNNNNTGG 1 cut(s) 577
PfoI TCCNGGA 1 cut(s) 744
Ple19I CGATCG 1 cut(s) 437
PleI GAGTC 4 cut(s) 124, 1316, 2896, 3316
PpsI GAGTC 4 cut(s) 124, 1316, 2896, 3316
Ppu21I YACGTR 2 cut(s) 1613, 3568
PscI ACATGT 3 cut(s) 1819, 2281, 3530
PshAI GACNNNNGTC 1 cut(s) 1531
Psp1406I AACGTT 1 cut(s) 1754
Psp6I CCWGG 1 cut(s) 744
PspGI CCWGG 1 cut(s) 744
PspN4I GGNNCC 1 cut(s) 743
PspPI GGNCC 5 cut(s) 1348, 1919, 2260, 3127, 3935
PstI CTGCAG 1 cut(s) 775
PsuI RGATCY 2 cut(s) 741, 1604
PsyI GACNNNGTC 1 cut(s) 1346
PvuI CGATCG 1 cut(s) 437
RsaI GTAC 5 cut(s) 141, 1122, 2109, 3274, 3376
RsaNI GTAC 5 cut(s) 140, 1121, 2108, 3273, 3375
RseI CAYNNNNRTG 1 cut(s) 2597
SalI GTCGAC 1 cut(s) 3144
SapI GCTCTTC 1 cut(s) 3639
Sau96I GGNCC 5 cut(s) 1348, 1919, 2260, 3127, 3935
SchI GAGTC 4 cut(s) 125, 1316, 2897, 3317
ScrFI CCNGG 2 cut(s) 746, 3629
SduI GDGCHC 4 cut(s) 28, 1160, 2539, 3239
SfcI CTRYAG 2 cut(s) 771, 783
SinI GGWCC 1 cut(s) 1348
SmiMI CAYNNNNRTG 1 cut(s) 2597
SphI GCATGC 1 cut(s) 2596
SseBI AGGCCT 1 cut(s) 2118
SsiI CCGC 8 cut(s) 60, 161, 539, 1552, 3330, 3496, 3672, 3926
SspI AATATT 4 cut(s) 802, 1424, 2714, 3056
SspMI CTAG 7 cut(s) 429, 984, 1326, 1923, 2885, 3194, 3458
StuI AGGCCT 1 cut(s) 2118
StyD4I CCNGG 2 cut(s) 744, 3627
StyI CCWWGG 7 cut(s) 919, 983, 1566, 1922, 2758, 3139, 3588
TaaI ACNGT 3 cut(s) 970, 1304, 2732
TaqII GACCGA 1 cut(s) 3997
TatI WGTACW 4 cut(s) 139, 2107, 3272, 3374
TauI GCSGC 3 cut(s) 62, 1554, 3333
TscAI CASTG 6 cut(s) 780, 955, 2016, 2522, 3547, 3888
TseFI GTSAC 3 cut(s) 937, 950, 2366
TseI GCWGC 7 cut(s) 109, 770, 2229, 2772, 3024, 3198, 3201
Tsp45I GTSAC 3 cut(s) 937, 950, 2366
TspRI CASTG 6 cut(s) 780, 955, 2016, 2522, 3547, 3888
Tth111I GACNNNGTC 1 cut(s) 1346
Van91I CCANNNNNTGG 1 cut(s) 577
Vha464I CTTAAG 1 cut(s) 2308
VpaK11BI GGWCC 1 cut(s) 1348
XagI CCTNNNNNAGG 1 cut(s) 2910
XapI RAATTY 5 cut(s) 8, 2142, 2796, 3705, 3810
XbaI TCTAGA 3 cut(s) 1325, 2884, 3457
XceI RCATGY 8 cut(s) 227, 1823, 1841, 1991, 2285, 2302, 2596, 3534
XcmI CCANNNNNNNNNTGG 3 cut(s) 610, 1393, 1978
XmaJI CCTAGG 2 cut(s) 983, 1922
XmiI GTMKAC 4 cut(s) 2041, 2074, 3145, 3535
XmnI GAANNNNTTC 1 cut(s) 2247
XspI CTAG 7 cut(s) 429, 984, 1326, 1923, 2885, 3194, 3458
ZraI GACGTC 1 cut(s) 3720
Zsp2I ATGCAT 1 cut(s) 3923
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.