MD04G1113400.v1.1

disease resistance

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Forward (+)
19946316 .. 19949758
3443 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1113400.v1.1.491

Sequence Viewer

Length: 2676 bp
ATGATGCGATGCAAAAAGAGTGATGGATGGCATTCAATTCTAAACAACAGAATGTGGGATTTACAAGAAGGAGATTATAGAATTTTGTCGGTTTTGAAGTTGAGTTTTGATGAATTGAAAATTCCATCTTTAAAACGGTGTTTTGCATATTGCTCAATGTTCACCAAAGATTTCAAAATTGAAAAGGATGATTTGATCCAAGTATGGATGGCTCATGGGTTACTTCAGTGCCCTTCTCCCAACCAAAGTAATCTAGAGATGGAGGATATTGGAAATGAATATTTTAATATTCTCTTGGAGAGCTCTTTTTTTCAAGATGTTACAGTGGATACGTATACTGCTACTACTATTACTCATTGCAAGATGCACGATCTTGTGCATGATCTTGCAGAATATGTATCAAAATCAAAGAGCAAAGAATCCAATGAGTTTCGACATGTGGCGCAAATTTCTACCTCAATGTTACAAGGAATATCAAAAGGAGGTGTACATAAATTGCGCTCAATTTTTTGGAATGGTGAAGTTCATTGTGACATCTTATCAAGATTTAAAGGCTTACGTGTGTTAAAATTATGCGAGGCTTTTATCAAGGAGTTACCAATTTCAATTGGGGAGTTGAAACACTTGAGGTATCTAGATGTTTCGAGAACAAGGATGAGGACGCTCCCCCAATGTATTGGCAAGCTTTATAATCTACAGACATTGAGGATGTTCAGACTCAAAGTTAAGTTCCCAAAGGAGCTGCTTAAATTGATAAATCTGAGACATTTTTATTTTGATCGAGATGATGAGATATATCCAGTTGGGGTTGGGCAATTGACTAATCTCCGATCATTATCTTTTTTCATTGTGGGTAAGGAGAGAGGTCGTGGAATAGAGGAACTGGCTGGCTTAAAGCAATTGAAAGGCCGATTATCCATTCATAATCTCGAGCTTGTGAGAGATGGAGAAGAAGCAAGGAAGGCAAAATTAGTGGACAAGACAGGCATTCGCAGATTAGTCTTTGTATGGGACAGGTCACGGATCAATATTAACGACCTCGATGTACTAGAAGGCCTTCAACCACCGAATACTAAACTGGAATTTTTAGAGATTCGCAACTTCATGGGTGACAAATTTGCATCGTGGATGATGGGAAGTCCCTTTCCTTCATTAAAAATATTAGCTATCATTGGTGCCAACGATCTAATTGAATGGATGGAAGCACCAGAAAACATTGTGCTCTTTCCATGCCTCGAGGAGCTGCGTCTGCACAATTGCAATCAATTGAGAAGTGCTCCTAGTCATTTTCCATCTCTTAAAAGGTTAGTCATATATTCTATGGCTAGCGGCATGCCAATATCCAATATAAGCAGCAACCTGACCACTCTGACCTCTTTGGAAATAAAGAATATAAAGGGACTTGATTATCTGCCAGAAGGGATGTTAAAAAACAACAAGAATCTTGCATGTTTGAAGATTTACAATTGTTGGGACATGAGTTCTGTTACCATGGATGATGTATTTGGGTGCTGCACTTCTCTTAAGTCCGTGATTATTTTTGACTGTCATAAACTTAGGTGTCTGCCGGATGGGTTGCAAACTCTTGTTTCTCTTGAGACGTTGTATGTGCGGGGTTGCAGTAGTCTAGAGCTCATTCCAGATATGCACAGTTTGGCTTCTCTCTGTGAATTATCCATTGATGGCTGTCCTCAGTTATCCAGTCTACCTAATGGACTTGAATACTGCACTTCTCTTCAAATGTTGAAAATAAGAGACTGCTCCAAAATAACATCCATTCCAATCACACAGGGCCTCGCTTCTCTCTGTATATTAGATATTCACAATTGCCCTGAATTATCAAGCTTGCCGAGTGGGTTAGAACATTGTACCTCTCTTCAGGACTTGACTATATCTTCTTGCAAAAAGCTAACATCTACTGGGATTCACAGCCTCCCACCCTCCCTCCACTCTCTGGCGATATATGACTGCACAAGTCTAGAGTTCATTCTAACTTTACAGGGCTGCCGGTCCCTCCGAAAATTAGAAATTGGTGGTTGTGATGGAGGGACAAGCCAACTGGTAACTGAGCTGGAATACTGTACCTCTCTTCATTCACTGTCTATCAGAGGTTGTGAAAGTCTGGCCCATTTTCCAGATGGGCTACAACTGTCTTCTTCTCTTGAGATACTCAGTATAAACAGGTGCCCAAATCTAGAAACTATTCCAAGTTTAGAAAACCTCACCTGCTTGAAGAAATTCGAAATTGGTGGATTTTGGAAGGAGCTCGATTCATTCCCTTCTTTTCAGGTTCTGCCACAACTTGAAAGGTTAAGCTTGTGGGGTTGGCGTAAGCTCAAGTCTCTGCCTGAACAAGTTCAACACTTCACTTCTCTAGCACATTTGGATATATTCGAGTTTGAAGGAATGGAGGCTCTTCCAGAGTGGTTGGGGAACCTTGCATCTCTTGTGTCCCTACATATATGGGAGTGCAGGAATCTGATGTATCTACCTACGGTTGAAGCTATGAAATGCCTCACCAAATTAGAACACATATCATTTTCTGATTGTCCTCTTCTAAAAGAGAAGTGCAAAAAGGAGAGCGGCCCAGAATGGTCCAAAATTTCACATATTCCAGAGATTGAAGTTGACGGGATCCGACTTCAGAATCTTCCAATATCTCTAAATGAGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

892

Amino Acids

101.23

Weight (kDa)

6.45

Isoelectric Point (pI)

49.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_DRP PF23559 53 - 130 1.7e-23 Disease resistance protein Winged helix domain
LRR_14 PF23598 166 - 390 3.9e-25 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 292 - 395 9.2e-21 R13L1/DRL21 LRRs
LRR_RPS2 PF23247 504 - 635 3.4e-06 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_14 PF23598 598 - 746 4.9e-07 Leucine-rich repeat region
LRR_14 PF23598 736 - 847 1.3e-06 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 786 - 843 5.5e-07 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000029)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13530 FvH4_4g18270 FvH4_6g12200 FvH4_6g12460 FvH4_6g12461 FvH4_6g13450 FvH4_6g15090 FvH4_6g15220 FvH4_6g15230 FvH4_6g15250 FvH4_6g15251 FvH4_6g15340 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47980 FvH4_6g47980 FvH4_6g47980 FvH4_6g48170 FvH4_6g48310 FvH4_6g48310 FvH4_6g48850 FvH4_6g48881 FvH4_7g11830
malus_domestica MD02G1059900.v1.1 MD02G1069600.v1.1 MD02G1069700.v1.1 MD02G1070100.v1.1 MD02G1070200.v1.1 MD02G1070300.v1.1 MD02G1070800.v1.1 MD02G1070900.v1.1 MD02G1071200.v1.1 MD02G1071400.v1.1 MD02G1071900.v1.1 MD02G1075200.v1.1 MD03G1048000.v1.1 MD03G1049100.v1.1 MD03G1049200.v1.1 MD03G1052500.v1.1 MD03G1054100.v1.1 MD03G1054300.v1.1 MD03G1054400.v1.1 MD04G1113400.v1.1 MD04G1211100.v1.1 MD04G1211200.v1.1 MD05G1174900.v1.1 MD05G1175000.v1.1 MD05G1175900.v1.1 MD05G1243400.v1.1 MD07G1031500.v1.1 MD07G1031600.v1.1 MD07G1032500.v1.1 MD11G1046800.v1.1 MD11G1046900.v1.1 MD11G1047000.v1.1 MD11G1050400.v1.1 MD11G1050600.v1.1 MD11G1050800.v1.1 MD11G1051100.v1.1 MD11G1051600.v1.1 MD11G1051700.v1.1 MD11G1054600.v1.1 MD11G1055600.v1.1 MD11G1055700.v1.1 MD11G1055800.v1.1 MD11G1056000.v1.1 MD12G1126600.v1.1 MD12G1126700.v1.1 MD12G1126800.v1.1 MD12G1127300.v1.1 MD12G1127600.v1.1 MD12G1127900.v1.1 MD12G1128100.v1.1 MD12G1128300.v1.1 MD15G1261500.v1.1
prunus_persica Prupe.1G010700_v2.0.a1 Prupe.1G010800_v2.0.a1 Prupe.1G011000_v2.0.a1 Prupe.1G159600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163700_v2.0.a1 Prupe.1G163700_v2.0.a1 Prupe.1G163800_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G235500_v2.0.a1 Prupe.2G067400_v2.0.a1 Prupe.2G067500_v2.0.a1 Prupe.2G111700_v2.0.a1 Prupe.2G111800_v2.0.a1 Prupe.3G012000_v2.0.a1 Prupe.6G243400_v2.0.a1 Prupe.6G243500_v2.0.a1 Prupe.6G243600_v2.0.a1 Prupe.6G243700_v2.0.a1 Prupe.6G243800_v2.0.a1 Prupe.6G243900_v2.0.a1
pyrus_communis pycom02g04860 pycom02g04880 pycom02g04890 pycom02g05510 pycom02g05520 pycom02g05600 pycom02g05930 pycom02g06000 pycom02g06010 pycom03g03800 pycom03g03860 pycom03g03880 pycom03g03890 pycom03g03910 pycom03g03920 pycom03g04200 pycom03g04290 pycom03g04300 pycom03g04310 pycom03g04320 pycom03g09260 pycom04g10150 pycom04g10160 pycom04g10170 pycom05g16180 pycom05g16190 pycom05g16240 pycom05g21980 pycom05g21990 pycom07g02280 pycom11g03800 pycom11g03810 pycom11g04080 pycom11g04140 pycom11g04150 pycom11g04160 pycom11g04570 pycom11g04580 pycom11g04590 pycom11g04610 pycom12g12470 pycom12g12490 pycom13g22050
rosa_chinensis RchiOBHm_Chr1g0317761 RchiOBHm_Chr1g0317821 RchiOBHm_Chr1g0317831 RchiOBHm_Chr1g0317871 RchiOBHm_Chr1g0350501 RchiOBHm_Chr2g0107631 RchiOBHm_Chr3g0452091 RchiOBHm_Chr3g0464001 RchiOBHm_Chr3g0464281 RchiOBHm_Chr3g0466331 RchiOBHm_Chr3g0467341 RchiOBHm_Chr3g0467381 RchiOBHm_Chr3g0467731 RchiOBHm_Chr3g0468291 RchiOBHm_Chr3g0468321 RchiOBHm_Chr3g0468341 RchiOBHm_Chr3g0468391 RchiOBHm_Chr3g0468411 RchiOBHm_Chr3g0468571 RchiOBHm_Chr3g0468591 RchiOBHm_Chr3g0490721 RchiOBHm_Chr3g0490751 RchiOBHm_Chr3g0490761 RchiOBHm_Chr3g0490771 RchiOBHm_Chr3g0490951 RchiOBHm_Chr3g0491001 RchiOBHm_Chr3g0491011 RchiOBHm_Chr4g0412461 RchiOBHm_Chr4g0414161 RchiOBHm_Chr4g0414181 RchiOBHm_Chr4g0414191 RchiOBHm_Chr4g0414281 RchiOBHm_Chr4g0414441 RchiOBHm_Chr4g0414521 RchiOBHm_Chr4g0414531 RchiOBHm_Chr4g0417011 RchiOBHm_Chr4g0417021 RchiOBHm_Chr4g0417041 RchiOBHm_Chr4g0417071 RchiOBHm_Chr4g0417101 RchiOBHm_Chr4g0417531 RchiOBHm_Chr4g0417641 RchiOBHm_Chr4g0417651 RchiOBHm_Chr4g0417701 RchiOBHm_Chr4g0417731 RchiOBHm_Chr4g0417741 RchiOBHm_Chr4g0417781 RchiOBHm_Chr4g0418751 RchiOBHm_Chr4g0418791 RchiOBHm_Chr4g0418861 RchiOBHm_Chr4g0418881 RchiOBHm_Chr4g0418901 RchiOBHm_Chr4g0422451 RchiOBHm_Chr4g0422461 RchiOBHm_Chr4g0422471 RchiOBHm_Chr4g0422541 RchiOBHm_Chr4g0422561 RchiOBHm_Chr4g0422591 RchiOBHm_Chr4g0422651 RchiOBHm_Chr4g0422661 RchiOBHm_Chr5g0003251 RchiOBHm_Chr5g0003261 RchiOBHm_Chr5g0055871 RchiOBHm_Chr7g0204701 RchiOBHm_Chr7g0204741
rosa_laevigata RLG00000007607 RLG00000007932 RLG00000017606 RLG00000024418 RLG00000025629 RLG00000030586
rosa_multiflora Rmu_co7959167.1_g000001 Rmu_co8021330.1_g000001 Rmu_co8132128.1_g000001 Rmu_co8224744.1_g000001 Rmu_co8281865.1_g000001 Rmu_co8298487.1_g000001 Rmu_co8319035.1_g000001 Rmu_co8380035.1_g000001 Rmu_co8385371.1_g000001 Rmu_co8398173.1_g000001 Rmu_co8423363.1_g000001 Rmu_co8438275.1_g000001 Rmu_co8474729.1_g000001 Rmu_sc0000057.1_g000008 Rmu_sc0000350.1_g000023 Rmu_sc0000480.1_g000005 Rmu_sc0000654.1_g000021 Rmu_sc0000654.1_g000029 Rmu_sc0000654.1_g000032 Rmu_sc0000654.1_g000041 Rmu_sc0000654.1_g000045 Rmu_sc0000772.1_g000002 Rmu_sc0000772.1_g000041 Rmu_sc0000808.1_g000040 Rmu_sc0000830.1_g000062 Rmu_sc0000830.1_g000065 Rmu_sc0000830.1_g000072 Rmu_sc0000830.1_g000073 Rmu_sc0000935.1_g000020 Rmu_sc0000935.1_g000024 Rmu_sc0000935.1_g000026 Rmu_sc0000935.1_g000027 Rmu_sc0000935.1_g000031 Rmu_sc0000935.1_g000033 Rmu_sc0000962.1_g000033 Rmu_sc0000962.1_g000036 Rmu_sc0000962.1_g000063 Rmu_sc0000962.1_g000064 Rmu_sc0000962.1_g000065 Rmu_sc0001029.1_g000007 Rmu_sc0001063.1_g000014 Rmu_sc0001149.1_g000010 Rmu_sc0001149.1_g000011 Rmu_sc0001358.1_g000009 Rmu_sc0001448.1_g000003 Rmu_sc0001448.1_g000004 Rmu_sc0001729.1_g000005 Rmu_sc0001729.1_g000007 Rmu_sc0001729.1_g000020 Rmu_sc0001729.1_g000023 Rmu_sc0001793.1_g000015 Rmu_sc0002494.1_g000018 Rmu_sc0002494.1_g000019 Rmu_sc0002604.1_g000022 Rmu_sc0002922.1_g000011 Rmu_sc0003008.1_g000009 Rmu_sc0003221.1_g000061 Rmu_sc0003221.1_g000062 Rmu_sc0003459.1_g000014 Rmu_sc0003480.1_g000015 Rmu_sc0003541.1_g000016 Rmu_sc0003541.1_g000020 Rmu_sc0004035.1_g000001 Rmu_sc0004035.1_g000005 Rmu_sc0004035.1_g000011 Rmu_sc0004142.1_g000004 Rmu_sc0004142.1_g000010 Rmu_sc0004353.1_g000008 Rmu_sc0004616.1_g000009 Rmu_sc0004616.1_g000010 Rmu_sc0005231.1_g000004 Rmu_sc0006380.1_g000025 Rmu_sc0006492.1_g000010 Rmu_sc0006895.1_g000001 Rmu_sc0006895.1_g000002 Rmu_sc0006895.1_g000005 Rmu_sc0007034.1_g000004 Rmu_sc0007104.1_g000006 Rmu_sc0008990.1_g000003 Rmu_sc0008990.1_g000004 Rmu_sc0009106.1_g000003 Rmu_sc0009516.1_g000002 Rmu_sc0009516.1_g000003 Rmu_sc0009516.1_g000004 Rmu_sc0009516.1_g000005 Rmu_sc0009645.1_g000001 Rmu_sc0010274.1_g000001 Rmu_sc0010274.1_g000002 Rmu_sc0010419.1_g000003 Rmu_sc0010917.1_g000017 Rmu_sc0011213.1_g000001 Rmu_sc0011228.1_g000007 Rmu_sc0011538.1_g000011 Rmu_sc0011538.1_g000014 Rmu_sc0011538.1_g000015 Rmu_sc0012211.1_g000006 Rmu_sc0012351.1_g000003 Rmu_sc0012351.1_g000005 Rmu_sc0012915.1_g000002 Rmu_sc0013088.1_g000001 Rmu_sc0013459.1_g000001 Rmu_sc0013765.1_g000004 Rmu_sc0013765.1_g000005 Rmu_sc0014003.1_g000012 Rmu_sc0014003.1_g000014 Rmu_sc0014698.1_g000001 Rmu_sc0015740.1_g000001 Rmu_sc0016429.1_g000003 Rmu_sc0018885.1_g000001 Rmu_sc0020345.1_g000001 Rmu_sc0027791.1_g000001 Rmu_sc0037325.1_g000001 Rmu_ssc0000010.1_g000024 Rmu_ssc0000010.1_g000025 Rmu_ssc0000083.1_g000021 Rmu_ssc0000340.1_g000002 Rmu_ssc0000386.1_g000002 Rmu_ssc0000386.1_g000024 Rmu_ssc0000386.1_g000025 Rmu_ssc0000386.1_g000034 Rmu_ssc0000386.1_g000037 Rmu_ssc0000477.1_g000001
rosa_roxburghii Rroxscaffold_161G00448010 Rroxscaffold_164G00436080 Rroxscaffold_1G00024500 Rroxscaffold_2G00124290 Rroxscaffold_3G00222940 Rroxscaffold_3G00227440 Rroxscaffold_4G00304810 Rroxscaffold_4G00330180 Rroxscaffold_4G00330200 Rroxscaffold_5G00356620 Rroxscaffold_5G00358170 Rroxscaffold_5G00360880 Rroxscaffold_5G00361220 Rroxscaffold_5G00361950 Rroxscaffold_5G00361960 Rroxscaffold_5G00361990 Rroxscaffold_5G00362370 Rroxscaffold_5G00364540 Rroxscaffold_5G00364550 Rroxscaffold_5G00364580 Rroxscaffold_5G00364600 Rroxscaffold_6G00393290 Rroxscaffold_6G00412680 Rroxscaffold_6G00412790 Rroxscaffold_6G00413470 Rroxscaffold_6G00413720 Rroxscaffold_6G00416070 Rroxscaffold_7G00205400
rosa_rugosa Rorug01G0017300 Rorug01G0017400 Rorug01G0018000 Rorug01G0018100 Rorug01G0211500 Rorug02G0638200 Rorug03G0070000 Rorug03G0071200 Rorug03G0081000 Rorug03G0086500 Rorug03G0089300 Rorug03G0095300 Rorug03G0096000 Rorug03G0096000 Rorug04G0055000 Rorug04G0078300 Rorug04G0104100.1 Rorug04G0113800 Rorug04G0126700 Rorug04G0128000 Rorug04G0145900 Rorug04G0148700 Rorug04G0149100 Rorug04G0149100 Rorug04G0149200 Rorug04G0149300 Rorug04G0154900 Rorug04G0180400 Rorug04G0180500 Rorug04G0180700 Rorug04G0180800 Rorug04G0401500 Rorug04G0402100 Rorug05G0288600 Rorug05G0334100 Rorug07G0176400
rosa_samantha Rh1DG043200 Rh1DG043500 Rh1DG043900 Rh1DG222800 Rh3CG039900 Rh3CG156200 Rh3CG328500 Rh3CG328800 Rh3DG165000 Rh4AG208400 Rh4BG205600 Rh4BG213900 Rh4BG243900 Rh4CG198800 Rh4DG168600 Rh4DG180100 Rh4DG180300 Rh4DG180600 Rh4DG181200 Rh4DG181600 Rh4DG181700 Rh4DG183700 Rh4DG184000 Rh4DG184400 Rh4DG184700 Rh4DG206100 Rh4DG206200 Rh4DG206300 Rh4DG215600 Rh4DG238700 Rh4DG238900 Rh5DG390300
rosa_wichuraiana Rw0G005050 Rw0G009260 Rw0G009280 Rw0G015600 Rw0G023570 Rw1G002140 Rw1G002170 Rw1G002210 Rw1G002240 Rw1G019500 Rw2G015490 Rw3G003020 Rw3G010900 Rw3G012030 Rw3G012790 Rw3G013050 Rw3G013540 Rw3G013640 Rw3G013650 Rw3G026050 Rw3G026070 Rw4G015740 Rw4G015790 Rw4G015910 Rw4G015930 Rw4G015950 Rw4G017900 Rw4G017930 Rw4G018440 Rw4G018450 Rw4G018530 Rw4G020720 Rw4G020760 Rw5G019250 Rw5G034370 Rw7G018700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 690
AarI CACCTGC 1 cut(s) 2234
AbsI CCTCGAGG 1 cut(s) 1235
Acc36I ACCTGC 1 cut(s) 2234
AccB1I GGYRCC 2 cut(s) 1175, 2184
AccB7I CCANNNNNTGG 1 cut(s) 1954
AccBSI CCGCTC 1 cut(s) 2583
AccI GTMKAC 2 cut(s) 335, 1705
AciI CCGC 3 cut(s) 1329, 1612, 2583
AclWI GGATC 4 cut(s) 190, 1031, 2629, 2642
AcsI RAATTY 7 cut(s) 81, 120, 447, 1082, 1115, 2237, 2601
AcuI CTGAAG 3 cut(s) 209, 1862, 2627
AfaI GTAC 5 cut(s) 489, 1047, 1870, 2083, 2672
AfiI CCNNNNNNNGG 1 cut(s) 1954
AflII CTTAAG 1 cut(s) 1523
AflIII ACRYGT 2 cut(s) 436, 559
Alw21I GWGCWC 5 cut(s) 305, 1224, 1279, 1635, 2268
Alw26I GTCTC 4 cut(s) 757, 1592, 1749, 2346
AlwI GGATC 4 cut(s) 190, 1031, 2629, 2642
AlwNI CAGNNNCTG 1 cut(s) 2293
Ama87I CYCGRG 2 cut(s) 929, 1235
AoxI GGCC 5 cut(s) 907, 1054, 1792, 2124, 2584
ApeKI GCWGC 5 cut(s) 742, 1243, 1353, 1512, 2004
ApoI RAATTY 7 cut(s) 81, 120, 447, 1082, 1115, 2237, 2601
Asp700I GAANNNNTTC 4 cut(s) 1056, 2202, 2237, 2355
AspLEI GCGC 2 cut(s) 445, 501
AspS9I GGNCC 5 cut(s) 1792, 2010, 2125, 2585, 2595
AsuHPI GGTGA 5 cut(s) 154, 530, 1121, 2215, 2509
AsuII TTCGAA 1 cut(s) 2241
AsuNHI GCTAGC 1 cut(s) 1325
AvaI CYCGRG 2 cut(s) 929, 1235
AvaII GGWCC 2 cut(s) 2010, 2595
BaeGI GKGCMC 2 cut(s) 233, 2189
BamHI GGATCC 1 cut(s) 2634
BanI GGYRCC 2 cut(s) 1175, 2184
BanII GRGCYC 3 cut(s) 305, 1635, 2268
BbsI GAAGAC 1 cut(s) 2145
Bbv12I GWGCWC 5 cut(s) 305, 1224, 1279, 1635, 2268
BbvI GCAGC 5 cut(s) 729, 1230, 1365, 1499, 1991
BciVI GTATCC 1 cut(s) 322
BcoDI GTCTC 4 cut(s) 757, 1592, 1749, 2346
BfaI CTAG 9 cut(s) 254, 635, 1049, 1281, 1326, 1628, 1979, 2195, 2375
BfmI CTRYAG 1 cut(s) 695
BfrI CTTAAG 1 cut(s) 1523
BfuAI ACCTGC 1 cut(s) 2234
BfuI GTATCC 1 cut(s) 322
BisI GCNGC 7 cut(s) 743, 1244, 1330, 1354, 1513, 2005, 2584
BlsI GCNGC 7 cut(s) 744, 1245, 1331, 1355, 1514, 2006, 2585
BmcAI AGTACT 1 cut(s) 2672
Bme18I GGWCC 2 cut(s) 2010, 2595
BmeT110I CYCGRG 2 cut(s) 929, 1235
BmgT120I GGNCC 5 cut(s) 1792, 2010, 2125, 2585, 2595
BmiI GGNNCC 5 cut(s) 1177, 2012, 2186, 2435, 2636
BmrI ACTGGG 1 cut(s) 1929
BmsI GCATC 3 cut(s) 354, 1130, 2450
BmtI GCTAGC 1 cut(s) 1329
BmuI ACTGGG 1 cut(s) 1929
BpiI GAAGAC 1 cut(s) 2145
BplI GAGNNNNNCTC 2 cut(s) 1261, 1293
Bpu14I TTCGAA 1 cut(s) 2241
BpuEI CTTGAG 4 cut(s) 646, 1616, 2183, 2321
BsaAI YACGTR 2 cut(s) 333, 560
BsaBI GATNNNNATC 1 cut(s) 835
BsaJI CCNNGG 1 cut(s) 1491
BsaXI ACNNNNNCTCC 2 cut(s) 1929, 1959
Bsc4I CCNNNNNNNGG 1 cut(s) 1954
Bse118I RCCGGY 1 cut(s) 2007
Bse1I ACTGG 6 cut(s) 800, 888, 1083, 1701, 1924, 2064
Bse3DI GCAATG 1 cut(s) 355
Bse8I GATNNNNATC 1 cut(s) 835
BseDI CCNNGG 1 cut(s) 1491
BseJI GATNNNNATC 1 cut(s) 835
BseLI CCNNNNNNNGG 1 cut(s) 1954
BseMI GCAATG 1 cut(s) 355
BseMII CTCAG 4 cut(s) 752, 1706, 2058, 2185
BseNI ACTGG 6 cut(s) 800, 888, 1083, 1701, 1924, 2064
BseRI GAGGAG 1 cut(s) 1253
BseSI GKGCMC 2 cut(s) 233, 2189
BseXI GCAGC 5 cut(s) 729, 1230, 1365, 1499, 1991
BsgI GTGCAG 5 cut(s) 1235, 1498, 1711, 1954, 2491
BshFI GGCC 5 cut(s) 909, 1056, 1794, 2126, 2586
BshNI GGYRCC 2 cut(s) 1175, 2184
BsiHKAI GWGCWC 5 cut(s) 305, 1224, 1279, 1635, 2268
BsiHKCI CYCGRG 2 cut(s) 929, 1235
BsiSI CCGG 2 cut(s) 1568, 2008
BslFI GGGAC 7 cut(s) 1025, 1125, 1413, 1487, 1996, 2062, 2437
BslI CCNNNNNNNGG 1 cut(s) 1954
BsmAI GTCTC 4 cut(s) 757, 1592, 1749, 2346
BsmBI CGTCTC 1 cut(s) 1592
BsmFI GGGAC 7 cut(s) 1025, 1125, 1413, 1487, 1996, 2062, 2437
BsmI GAATGC 2 cut(s) 31, 987
BsnI GGCC 5 cut(s) 909, 1056, 1794, 2126, 2586
BsoBI CYCGRG 2 cut(s) 929, 1235
Bsp119I TTCGAA 1 cut(s) 2241
Bsp1286I GDGCHC 7 cut(s) 233, 305, 1224, 1279, 1635, 2189, 2268
Bsp1407I TGTACA 1 cut(s) 487
Bsp143I GATC 8 cut(s) 195, 370, 382, 778, 830, 1023, 1183, 2634
Bsp19I CCATGG 1 cut(s) 1491
BspACI CCGC 3 cut(s) 1329, 1612, 2583
BspANI GGCC 5 cut(s) 909, 1056, 1794, 2126, 2586
BspCNI CTCAG 4 cut(s) 753, 1705, 2059, 2184
BspLI GGNNCC 5 cut(s) 1177, 2012, 2186, 2435, 2636
BspMI ACCTGC 1 cut(s) 2234
BspOI GCTAGC 1 cut(s) 1329
BspPI GGATC 4 cut(s) 190, 1031, 2629, 2642
BspQI GCTCTTC 1 cut(s) 2421
BspT104I TTCGAA 1 cut(s) 2241
BspT107I GGYRCC 2 cut(s) 1175, 2184
BspTI CTTAAG 1 cut(s) 1523
BsrBI CCGCTC 1 cut(s) 2583
BsrDI GCAATG 1 cut(s) 355
BsrFI RCCGGY 1 cut(s) 2007
BsrGI TGTACA 1 cut(s) 487
BsrI ACTGG 6 cut(s) 800, 888, 1083, 1701, 1924, 2064
BssAI RCCGGY 1 cut(s) 2007
BssECI CCNNGG 1 cut(s) 1491
BssMI GATC 8 cut(s) 195, 370, 382, 778, 830, 1023, 1183, 2634
BssNAI GTATAC 1 cut(s) 336
BssT1I CCWWGG 1 cut(s) 1491
Bst1107I GTATAC 1 cut(s) 336
Bst4CI ACNGT 8 cut(s) 138, 325, 1547, 1652, 2081, 2100, 2151, 2497
Bst6I CTCTTC 5 cut(s) 1740, 1881, 2094, 2421, 2559
BstAFI CTTAAG 1 cut(s) 1523
BstAUI TGTACA 1 cut(s) 487
BstBAI YACGTR 2 cut(s) 333, 560
BstBI TTCGAA 1 cut(s) 2241
BstC8I GCNNGC 5 cut(s) 683, 889, 1327, 1334, 1847
BstDEI CTNAG 5 cut(s) 761, 1556, 1692, 2067, 2171
BstDSI CCRYGG 1 cut(s) 1491
BstHHI GCGC 2 cut(s) 445, 501
BstKTI GATC 8 cut(s) 198, 373, 385, 781, 833, 1026, 1186, 2637
BstMAI GTCTC 4 cut(s) 757, 1592, 1749, 2346
BstMBI GATC 8 cut(s) 195, 370, 382, 778, 830, 1023, 1183, 2634
BstMWI GCNNNNNNNGC 2 cut(s) 962, 1249
BstNSI RCATGY 3 cut(s) 440, 1336, 1452
BstSFI CTRYAG 1 cut(s) 695
BstSLI GKGCMC 2 cut(s) 233, 2189
BstSNI TACGTA 1 cut(s) 333
BstV1I GCAGC 5 cut(s) 729, 1230, 1365, 1499, 1991
BstV2I GAAGAC 1 cut(s) 2145
BstX2I RGATCY 1 cut(s) 2634
BstXI CCANNNNNNTGG 1 cut(s) 677
BstYI RGATCY 1 cut(s) 2634
BstZ17I GTATAC 1 cut(s) 336
BsuI GTATCC 1 cut(s) 322
BsuRI GGCC 5 cut(s) 909, 1056, 1794, 2126, 2586
BtgI CCRYGG 1 cut(s) 1491
BtgZI GCGATG 1 cut(s) 22
BtsIMutI CAGTG 3 cut(s) 233, 330, 2096
BveI ACCTGC 1 cut(s) 2234
Cac8I GCNNGC 5 cut(s) 683, 889, 1327, 1334, 1847
CaiI CAGNNNCTG 1 cut(s) 2293
CfoI GCGC 2 cut(s) 445, 501
Cfr10I RCCGGY 1 cut(s) 2007
Cfr13I GGNCC 5 cut(s) 1792, 2010, 2125, 2585, 2595
CseI GACGC 2 cut(s) 670, 1235
Csp6I GTAC 5 cut(s) 488, 1046, 1869, 2082, 2671
CspCI CAANNNNNGTGG 2 cut(s) 954, 989
CviAII CATG 9 cut(s) 215, 380, 437, 1105, 1230, 1333, 1449, 1477, 1492
CviQI GTAC 5 cut(s) 488, 1046, 1869, 2082, 2671
DdeI CTNAG 5 cut(s) 761, 1556, 1692, 2067, 2171
DpnI GATC 8 cut(s) 197, 372, 384, 780, 832, 1025, 1185, 2636
DpnII GATC 8 cut(s) 195, 370, 382, 778, 830, 1023, 1183, 2634
DraI TTTAAA 2 cut(s) 132, 550
Eam1104I CTCTTC 5 cut(s) 1740, 1881, 2094, 2421, 2559
EarI CTCTTC 5 cut(s) 1740, 1881, 2094, 2421, 2559
Ecl136II GAGCTC 3 cut(s) 303, 1633, 2266
Eco105I TACGTA 1 cut(s) 333
Eco130I CCWWGG 1 cut(s) 1491
Eco147I AGGCCT 1 cut(s) 1056
Eco24I GRGCYC 3 cut(s) 305, 1635, 2268
Eco47I GGWCC 2 cut(s) 2010, 2595
Eco53kI GAGCTC 3 cut(s) 303, 1633, 2266
Eco57I CTGAAG 3 cut(s) 209, 1862, 2627
Eco88I CYCGRG 2 cut(s) 929, 1235
EcoICRI GAGCTC 3 cut(s) 303, 1633, 2266
EcoO109I RGGNCCY 1 cut(s) 1792
EcoT14I CCWWGG 1 cut(s) 1491
EcoT38I GRGCYC 3 cut(s) 305, 1635, 2268
ErhI CCWWGG 1 cut(s) 1491
Esp3I CGTCTC 1 cut(s) 1592
FaeI CATG 9 cut(s) 218, 383, 440, 1108, 1233, 1336, 1452, 1480, 1495
FaqI GGGAC 7 cut(s) 1025, 1125, 1413, 1487, 1996, 2062, 2437
FatI CATG 9 cut(s) 214, 379, 436, 1104, 1229, 1332, 1448, 1476, 1491
FauI CCCGC 1 cut(s) 1605
FblI GTMKAC 2 cut(s) 335, 1705
Fnu4HI GCNGC 7 cut(s) 743, 1244, 1330, 1354, 1513, 2005, 2584
FriOI GRGCYC 3 cut(s) 305, 1635, 2268
Fsp4HI GCNGC 7 cut(s) 743, 1244, 1330, 1354, 1513, 2005, 2584
FspBI CTAG 9 cut(s) 254, 635, 1049, 1281, 1326, 1628, 1979, 2195, 2375
GlaI GCGC 2 cut(s) 444, 500
GluI GCNGC 7 cut(s) 743, 1244, 1330, 1354, 1513, 2005, 2584
HaeIII GGCC 5 cut(s) 909, 1056, 1794, 2126, 2586
HapII CCGG 2 cut(s) 1568, 2008
HgaI GACGC 2 cut(s) 670, 1235
HhaI GCGC 2 cut(s) 445, 501
Hin1II CATG 9 cut(s) 218, 383, 440, 1108, 1233, 1336, 1452, 1480, 1495
Hin6I GCGC 2 cut(s) 443, 499
HinP1I GCGC 2 cut(s) 443, 499
HincII GTYRAC 1 cut(s) 2629
HindII GTYRAC 1 cut(s) 2629
HindIII AAGCTT 3 cut(s) 683, 1843, 2314
HinfI GANTC 8 cut(s) 419, 717, 1093, 1441, 1924, 2270, 2476, 2647
HpaII CCGG 2 cut(s) 1568, 2008
HphI GGTGA 5 cut(s) 154, 530, 1121, 2215, 2509
Hpy166II GTNNAC 6 cut(s) 162, 336, 488, 976, 1706, 2629
Hpy8I GTNNAC 6 cut(s) 162, 336, 488, 976, 1706, 2629
HpyCH4III ACNGT 8 cut(s) 138, 325, 1547, 1652, 2081, 2100, 2151, 2497
HpyCH4IV ACGT 3 cut(s) 332, 559, 1601
HpyF10VI GCNNNNNNNGC 2 cut(s) 962, 1249
HpyF3I CTNAG 5 cut(s) 761, 1556, 1692, 2067, 2171
HpySE526I ACGT 3 cut(s) 332, 559, 1601
Hsp92II CATG 9 cut(s) 218, 383, 440, 1108, 1233, 1336, 1452, 1480, 1495
HspAI GCGC 2 cut(s) 443, 499
Kzo9I GATC 8 cut(s) 195, 370, 382, 778, 830, 1023, 1183, 2634
LguI GCTCTTC 1 cut(s) 2421
LmnI GCTCC 6 cut(s) 669, 739, 1240, 1282, 1766, 2263
Lsp1109I GCAGC 5 cut(s) 729, 1230, 1365, 1499, 1991
LweI GCATC 3 cut(s) 354, 1130, 2450
MaeI CTAG 9 cut(s) 254, 635, 1049, 1281, 1326, 1628, 1979, 2195, 2375
MaeII ACGT 3 cut(s) 332, 559, 1601
MaeIII GTNAC 9 cut(s) 219, 319, 462, 530, 594, 1017, 1109, 1486, 2062
MalI GATC 8 cut(s) 197, 372, 384, 780, 832, 1025, 1185, 2636
MbiI CCGCTC 1 cut(s) 2583
MboI GATC 8 cut(s) 195, 370, 382, 778, 830, 1023, 1183, 2634
MfeI CAATTG 7 cut(s) 606, 815, 899, 1255, 1265, 1465, 1825
MflI RGATCY 1 cut(s) 2634
MhlI GDGCHC 7 cut(s) 233, 305, 1224, 1279, 1635, 2189, 2268
MlyI GAGTC 1 cut(s) 711
MmeI TCCRAC 1 cut(s) 2662
MroXI GAANNNNTTC 4 cut(s) 1056, 2202, 2237, 2355
MspCI CTTAAG 1 cut(s) 1523
MspI CCGG 2 cut(s) 1568, 2008
MunI CAATTG 7 cut(s) 606, 815, 899, 1255, 1265, 1465, 1825
Mva1269I GAATGC 2 cut(s) 31, 987
MwoI GCNNNNNNNGC 2 cut(s) 962, 1249
NcoI CCATGG 1 cut(s) 1491
NdeII GATC 8 cut(s) 195, 370, 382, 778, 830, 1023, 1183, 2634
NheI GCTAGC 1 cut(s) 1325
NlaIII CATG 9 cut(s) 218, 383, 440, 1108, 1233, 1336, 1452, 1480, 1495
NlaIV GGNNCC 5 cut(s) 1177, 2012, 2186, 2435, 2636
NmeAIII GCCGAG 1 cut(s) 1875
NmuCI GTSAC 3 cut(s) 530, 1017, 1109
NspI RCATGY 3 cut(s) 440, 1336, 1452
NspV TTCGAA 1 cut(s) 2241
PaeI GCATGC 1 cut(s) 1336
PaeR7I CTCGAG 2 cut(s) 929, 1235
PaqCI CACCTGC 1 cut(s) 2234
PceI AGGCCT 1 cut(s) 1056
PciI ACATGT 1 cut(s) 436
PciSI GCTCTTC 1 cut(s) 2421
PctI GAATGC 2 cut(s) 31, 987
PdmI GAANNNNTTC 4 cut(s) 1056, 2202, 2237, 2355
PfeI GAWTC 7 cut(s) 419, 1093, 1441, 1924, 2270, 2476, 2647
PflMI CCANNNNNTGG 1 cut(s) 1954
PkrI GCNGC 7 cut(s) 744, 1245, 1331, 1355, 1514, 2006, 2585
PleI GAGTC 1 cut(s) 711
PpsI GAGTC 1 cut(s) 711
Ppu21I YACGTR 2 cut(s) 333, 560
PscI ACATGT 1 cut(s) 436
PsiI TTATAA 1 cut(s) 690
Psp124BI GAGCTC 3 cut(s) 305, 1635, 2268
PspN4I GGNNCC 5 cut(s) 1177, 2012, 2186, 2435, 2636
PspPI GGNCC 5 cut(s) 1792, 2010, 2125, 2585, 2595
PspXI VCTCGAGB 1 cut(s) 1235
PstNI CAGNNNCTG 1 cut(s) 2293
PsuI RGATCY 1 cut(s) 2634
RsaI GTAC 5 cut(s) 489, 1047, 1870, 2083, 2672
RsaNI GTAC 5 cut(s) 488, 1046, 1869, 2082, 2671
SacI GAGCTC 3 cut(s) 305, 1635, 2268
SapI GCTCTTC 1 cut(s) 2421
SatI GCNGC 7 cut(s) 743, 1244, 1330, 1354, 1513, 2005, 2584
Sau3AI GATC 8 cut(s) 195, 370, 382, 778, 830, 1023, 1183, 2634
Sau96I GGNCC 5 cut(s) 1792, 2010, 2125, 2585, 2595
ScaI AGTACT 1 cut(s) 2672
SchI GAGTC 1 cut(s) 711
SduI GDGCHC 7 cut(s) 233, 305, 1224, 1279, 1635, 2189, 2268
SfaNI GCATC 3 cut(s) 354, 1130, 2450
SfcI CTRYAG 1 cut(s) 695
Sfr274I CTCGAG 2 cut(s) 929, 1235
SfuI TTCGAA 1 cut(s) 2241
SinI GGWCC 2 cut(s) 2010, 2595
SlaI CTCGAG 2 cut(s) 929, 1235
SmlI CTYRAG 7 cut(s) 625, 929, 1235, 1523, 1595, 2162, 2336
SmoI CTYRAG 7 cut(s) 625, 929, 1235, 1523, 1595, 2162, 2336
SnaBI TACGTA 1 cut(s) 333
SphI GCATGC 1 cut(s) 1336
SseBI AGGCCT 1 cut(s) 1056
SsiI CCGC 3 cut(s) 1329, 1612, 2583
SspI AATATT 4 cut(s) 281, 289, 1030, 1161
SspMI CTAG 9 cut(s) 254, 635, 1049, 1281, 1326, 1628, 1979, 2195, 2375
SstI GAGCTC 3 cut(s) 305, 1635, 2268
StuI AGGCCT 1 cut(s) 1056
StyI CCWWGG 1 cut(s) 1491
TaaI ACNGT 8 cut(s) 138, 325, 1547, 1652, 2081, 2100, 2151, 2497
TaiI ACGT 3 cut(s) 335, 562, 1604
TaqI TCGA 9 cut(s) 433, 644, 781, 930, 1041, 1236, 2241, 2268, 2394
TatI WGTACW 3 cut(s) 487, 1045, 2670
TauI GCSGC 2 cut(s) 1332, 2586
TfiI GAWTC 7 cut(s) 419, 1093, 1441, 1924, 2270, 2476, 2647
TscAI CASTG 3 cut(s) 233, 330, 2103
TseFI GTSAC 3 cut(s) 530, 1017, 1109
TseI GCWGC 5 cut(s) 742, 1243, 1353, 1512, 2004
Tsp45I GTSAC 3 cut(s) 530, 1017, 1109
TspGWI ACGGA 2 cut(s) 1036, 1519
TspRI CASTG 3 cut(s) 233, 330, 2103
Van91I CCANNNNNTGG 1 cut(s) 1954
Vha464I CTTAAG 1 cut(s) 1523
VpaK11BI GGWCC 2 cut(s) 2010, 2595
XapI RAATTY 7 cut(s) 81, 120, 447, 1082, 1115, 2237, 2601
XbaI TCTAGA 5 cut(s) 253, 634, 1627, 1978, 2194
XceI RCATGY 3 cut(s) 440, 1336, 1452
XcmI CCANNNNNNNNNTGG 1 cut(s) 2135
XhoI CTCGAG 2 cut(s) 929, 1235
XmiI GTMKAC 2 cut(s) 335, 1705
XmnI GAANNNNTTC 4 cut(s) 1056, 2202, 2237, 2355
XspI CTAG 9 cut(s) 254, 635, 1049, 1281, 1326, 1628, 1979, 2195, 2375
ZrmI AGTACT 1 cut(s) 2672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.