Rroxscaffold_5G00360880

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
41498510 .. 41547198
48689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00360880.1

Sequence Viewer

Length: 2661 bp
ATGTTTGTACTCTCTCTCCTTGAATCCTCTGCCGGCGAAGTAGTGAGTAAGGTGACTTCACTCGCTATTGATCAATTGAGACTCGATATCATCTGGGGGTTCCGCGAAGAGATAAATAAGCTCAAAAAATCCTCAACTCTGATTGGAAATATAATCCATGATGCTGCTCATGAACCTGAAGATCGGAAACTGCGGGCAAGGGCCGATTGGATGAAGAGGCTTATAAGCGTAGCTTATAATGCAGACGATATTCTGGATGAAATAGAATATGAAGTTCAGCGTATCGTTATAAAGGAGACCAGCCTGGATAAGAAGATACTCGGCTTCTTCTGCAACAATCCTGTTGTATTTCGTCTCAAGATGGCACGCAAGATTAACAACATCAACACATCCTTGGATGATCTCTACAAGCAAGCAGCCAGTGTGGGACTCGGCATGACAAGGAGATCAAATGGAGGTGCAGCAGCAAGTAAAGATAAGCGGGAAACAACCTCATTCGTTGAGAAAAATGAATTCACCTTGAAAGATGCAACCATTGTTGGAAGGGATCAGGTTGTGTCAGATATAATTGCAACCTTGACCAACTCCAACAATCAAGAAAATATTCTTTCGGTGATGGCCATTGTGGGATTGGGAGGCCTAGGTAAAACTACTTTGGCTCGCTCAGTTACCAAGCAACTGAAAGAAGGTGAAATGAAAAGGTACTTTGATGCAACATTATGGGTGTATGTATCTAATACTTTTGATGTCAATTCAATTTTACATCGAATGCTGGAATCATATGACGACGTGACTGGAGCAAATCTTTCAAGTCTGGAAGCATTGATTGGAAGCCTCCAGCAGAAGTTGAAAGAGAGAAGGTATTTTCTTGTACTTGATGACGTTTGGAATGAGGATGCTAATAATTGGGATGATTTGAAGCGTTGTCTATTGCAACTAAATTCTGCTAAAGGAAGCTCTGTGATTGTCACCACCCGTAGTGCCAAGGTTGCATCAATCATGGAAACACTTCCTAGGTGCGATCTAGAGACTCTATCGGATGATGAATGTTGGTCCATAATAAAGGATAGAGCATTTGCAGATCCTAATGCTCCGATTCCTTCAGATCTAGAGGGAATCGGAAGGGACATTGCCAAAAAGTGTGCTGGTCTTCCATTGGCGGCAAAGGTTTTGGGAAGCTTGATGCGTTCTAAGAATGGTAGCAATGAATGGAAGTCAATTAAGGAAAGTAAAGTATGGCAGGTATCATCAGACAAAGAGGATAGCAGGATCATGTCGGTTCTGAGGTTGAGTTTTGACAATTTGGAATCACCATTGAAACAATGTTTTGCATATTGCGCCATGCTCGAGAGAGGTTCCTCAATTGAAAGAGATAACTTGATCCAACTATGGATGGCTCAAGGTTTTGTCCATCCTTCTCATGGTCACCAAACCGAGCAAGAGATTGAAATGGAGGATATAGGCAATAAGTATTTTGAGACTCTACTAGAGAACTCCTGGTTTCAAGATGCTACAGAGGATGAGGATGACTATGGTGTTATCATCACCCGATGCAAGATGCATGATCTTGTGCATGATCTTGCAAACGAAGTATCCAAGTGTGAGAGCTGGACATCAGACTTCAATCATGAGATGGAAGATCATGAGATTCGACATGTTGCACGGGTTCCTACTGCAATACTAGAAAAGATGCCAAAATCAAGTATATCAAGACTGCGCTCATTCTTTTCAAATATCGGGGAGGTCTCTAATACCATTTTTCCAAAATTTAGAGCTTTACGTGTCTTAAGTTTTTGTGAGACTGAGAATCAGGAGTTGCCATATTCACTTAAGAAGCTGAAGCACTTGAGATATCTAGATCTTTCTGATGCAAAAATCAAAGCACTCCCAGAGTCTATTGGCAAGCTCTATAACCTCCAAACATTGAGATTACCTTGGAATCTTAAAAACTGTCCGAAGGTGATTCAAAATTTGATCAACTTGAGGCATTTTTACTTTGGTGTGGAAACGGAATTTGAGGCTGGGATTTTGGGGCGATTAACTAATCTCCGAAGATTGCCCTTCTTTAATATGGGTGAGGAGAGAGGTCCTGCAATTAAGGAGTTGGGTGGGTTGAACCAATTGAGAGGCCACTTGATTATTATTGGGCTAGAACATGTAAGGGATGGAGAAGAAGCAAAGAAGGCTCGCTTGGTGCACAAGAGTCACTTAAGTCGGTTAACATTTGCATGGACAGACAATGAGGTACCTAATGAAAACCAGACGGAGGTACTAGATGGCTTGGAACCTCATGGTAACTTGCAAAGCTTGAACATTTACCATTTCATGGGTGCTAGATTTCCGTCATGGATATCAGCTGAAGGAGGAGAGGTCGTGAAGGTATTTCCTTGCCTCGAACAGTTGACGATAGATGGTTGTCCCAGCCTAGAGTCGATTCGGATCACACAGGGCATGCCGTCTCTCCGGAAATTGAATATTGAAAGTTGTGACAAATTGTCAAGCCTAGGAAGGGGGCTCAACTACTGCACCTCTCTTCAGGAATTGGAGATAAAGGATTGTTACAAACTAAGGTCAATTCCAATCACACAGGGCATGCCATCTCTCCGGAGCTTGAAGATTTCTCATTGGCATCACATCTCTCCGAGAATTGAAGATCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

886

Amino Acids

100.49

Weight (kDa)

6.18

Isoelectric Point (pI)

47.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 13 - 94 3e-11 Rx N-terminal domain
NB-ARC PF00931 183 - 361 3.9e-33 NB-ARC domain
AAA_22 PF13401 205 - 322 1.5e-07 AAA domain
NACHT PF05729 205 - 341 5.4e-06 NACHT domain
WHD_DRP PF23559 451 - 528 1.1e-20 Disease resistance protein Winged helix domain
LRR_14 PF23598 572 - 874 7.5e-31 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 699 - 829 4.2e-31 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000029)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13530 FvH4_4g18270 FvH4_6g12200 FvH4_6g12460 FvH4_6g12461 FvH4_6g13450 FvH4_6g15090 FvH4_6g15220 FvH4_6g15230 FvH4_6g15250 FvH4_6g15251 FvH4_6g15340 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47980 FvH4_6g47980 FvH4_6g47980 FvH4_6g48170 FvH4_6g48310 FvH4_6g48310 FvH4_6g48850 FvH4_6g48881 FvH4_7g11830
malus_domestica MD02G1059900.v1.1 MD02G1069600.v1.1 MD02G1069700.v1.1 MD02G1070100.v1.1 MD02G1070200.v1.1 MD02G1070300.v1.1 MD02G1070800.v1.1 MD02G1070900.v1.1 MD02G1071200.v1.1 MD02G1071400.v1.1 MD02G1071900.v1.1 MD02G1075200.v1.1 MD03G1048000.v1.1 MD03G1049100.v1.1 MD03G1049200.v1.1 MD03G1052500.v1.1 MD03G1054100.v1.1 MD03G1054300.v1.1 MD03G1054400.v1.1 MD04G1113400.v1.1 MD04G1211100.v1.1 MD04G1211200.v1.1 MD05G1174900.v1.1 MD05G1175000.v1.1 MD05G1175900.v1.1 MD05G1243400.v1.1 MD07G1031500.v1.1 MD07G1031600.v1.1 MD07G1032500.v1.1 MD11G1046800.v1.1 MD11G1046900.v1.1 MD11G1047000.v1.1 MD11G1050400.v1.1 MD11G1050600.v1.1 MD11G1050800.v1.1 MD11G1051100.v1.1 MD11G1051600.v1.1 MD11G1051700.v1.1 MD11G1054600.v1.1 MD11G1055600.v1.1 MD11G1055700.v1.1 MD11G1055800.v1.1 MD11G1056000.v1.1 MD12G1126600.v1.1 MD12G1126700.v1.1 MD12G1126800.v1.1 MD12G1127300.v1.1 MD12G1127600.v1.1 MD12G1127900.v1.1 MD12G1128100.v1.1 MD12G1128300.v1.1 MD15G1261500.v1.1
prunus_persica Prupe.1G010700_v2.0.a1 Prupe.1G010800_v2.0.a1 Prupe.1G011000_v2.0.a1 Prupe.1G159600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163700_v2.0.a1 Prupe.1G163700_v2.0.a1 Prupe.1G163800_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G235500_v2.0.a1 Prupe.2G067400_v2.0.a1 Prupe.2G067500_v2.0.a1 Prupe.2G111700_v2.0.a1 Prupe.2G111800_v2.0.a1 Prupe.3G012000_v2.0.a1 Prupe.6G243400_v2.0.a1 Prupe.6G243500_v2.0.a1 Prupe.6G243600_v2.0.a1 Prupe.6G243700_v2.0.a1 Prupe.6G243800_v2.0.a1 Prupe.6G243900_v2.0.a1
pyrus_communis pycom02g04860 pycom02g04880 pycom02g04890 pycom02g05510 pycom02g05520 pycom02g05600 pycom02g05930 pycom02g06000 pycom02g06010 pycom03g03800 pycom03g03860 pycom03g03880 pycom03g03890 pycom03g03910 pycom03g03920 pycom03g04200 pycom03g04290 pycom03g04300 pycom03g04310 pycom03g04320 pycom03g09260 pycom04g10150 pycom04g10160 pycom04g10170 pycom05g16180 pycom05g16190 pycom05g16240 pycom05g21980 pycom05g21990 pycom07g02280 pycom11g03800 pycom11g03810 pycom11g04080 pycom11g04140 pycom11g04150 pycom11g04160 pycom11g04570 pycom11g04580 pycom11g04590 pycom11g04610 pycom12g12470 pycom12g12490 pycom13g22050
rosa_chinensis RchiOBHm_Chr1g0317761 RchiOBHm_Chr1g0317821 RchiOBHm_Chr1g0317831 RchiOBHm_Chr1g0317871 RchiOBHm_Chr1g0350501 RchiOBHm_Chr2g0107631 RchiOBHm_Chr3g0452091 RchiOBHm_Chr3g0464001 RchiOBHm_Chr3g0464281 RchiOBHm_Chr3g0466331 RchiOBHm_Chr3g0467341 RchiOBHm_Chr3g0467381 RchiOBHm_Chr3g0467731 RchiOBHm_Chr3g0468291 RchiOBHm_Chr3g0468321 RchiOBHm_Chr3g0468341 RchiOBHm_Chr3g0468391 RchiOBHm_Chr3g0468411 RchiOBHm_Chr3g0468571 RchiOBHm_Chr3g0468591 RchiOBHm_Chr3g0490721 RchiOBHm_Chr3g0490751 RchiOBHm_Chr3g0490761 RchiOBHm_Chr3g0490771 RchiOBHm_Chr3g0490951 RchiOBHm_Chr3g0491001 RchiOBHm_Chr3g0491011 RchiOBHm_Chr4g0412461 RchiOBHm_Chr4g0414161 RchiOBHm_Chr4g0414181 RchiOBHm_Chr4g0414191 RchiOBHm_Chr4g0414281 RchiOBHm_Chr4g0414441 RchiOBHm_Chr4g0414521 RchiOBHm_Chr4g0414531 RchiOBHm_Chr4g0417011 RchiOBHm_Chr4g0417021 RchiOBHm_Chr4g0417041 RchiOBHm_Chr4g0417071 RchiOBHm_Chr4g0417101 RchiOBHm_Chr4g0417531 RchiOBHm_Chr4g0417641 RchiOBHm_Chr4g0417651 RchiOBHm_Chr4g0417701 RchiOBHm_Chr4g0417731 RchiOBHm_Chr4g0417741 RchiOBHm_Chr4g0417781 RchiOBHm_Chr4g0418751 RchiOBHm_Chr4g0418791 RchiOBHm_Chr4g0418861 RchiOBHm_Chr4g0418881 RchiOBHm_Chr4g0418901 RchiOBHm_Chr4g0422451 RchiOBHm_Chr4g0422461 RchiOBHm_Chr4g0422471 RchiOBHm_Chr4g0422541 RchiOBHm_Chr4g0422561 RchiOBHm_Chr4g0422591 RchiOBHm_Chr4g0422651 RchiOBHm_Chr4g0422661 RchiOBHm_Chr5g0003251 RchiOBHm_Chr5g0003261 RchiOBHm_Chr5g0055871 RchiOBHm_Chr7g0204701 RchiOBHm_Chr7g0204741
rosa_laevigata RLG00000007607 RLG00000007932 RLG00000017606 RLG00000024418 RLG00000025629 RLG00000030586
rosa_multiflora Rmu_co7959167.1_g000001 Rmu_co8021330.1_g000001 Rmu_co8132128.1_g000001 Rmu_co8224744.1_g000001 Rmu_co8281865.1_g000001 Rmu_co8298487.1_g000001 Rmu_co8319035.1_g000001 Rmu_co8380035.1_g000001 Rmu_co8385371.1_g000001 Rmu_co8398173.1_g000001 Rmu_co8423363.1_g000001 Rmu_co8438275.1_g000001 Rmu_co8474729.1_g000001 Rmu_sc0000057.1_g000008 Rmu_sc0000350.1_g000023 Rmu_sc0000480.1_g000005 Rmu_sc0000654.1_g000021 Rmu_sc0000654.1_g000029 Rmu_sc0000654.1_g000032 Rmu_sc0000654.1_g000041 Rmu_sc0000654.1_g000045 Rmu_sc0000772.1_g000002 Rmu_sc0000772.1_g000041 Rmu_sc0000808.1_g000040 Rmu_sc0000830.1_g000062 Rmu_sc0000830.1_g000065 Rmu_sc0000830.1_g000072 Rmu_sc0000830.1_g000073 Rmu_sc0000935.1_g000020 Rmu_sc0000935.1_g000024 Rmu_sc0000935.1_g000026 Rmu_sc0000935.1_g000027 Rmu_sc0000935.1_g000031 Rmu_sc0000935.1_g000033 Rmu_sc0000962.1_g000033 Rmu_sc0000962.1_g000036 Rmu_sc0000962.1_g000063 Rmu_sc0000962.1_g000064 Rmu_sc0000962.1_g000065 Rmu_sc0001029.1_g000007 Rmu_sc0001063.1_g000014 Rmu_sc0001149.1_g000010 Rmu_sc0001149.1_g000011 Rmu_sc0001358.1_g000009 Rmu_sc0001448.1_g000003 Rmu_sc0001448.1_g000004 Rmu_sc0001729.1_g000005 Rmu_sc0001729.1_g000007 Rmu_sc0001729.1_g000020 Rmu_sc0001729.1_g000023 Rmu_sc0001793.1_g000015 Rmu_sc0002494.1_g000018 Rmu_sc0002494.1_g000019 Rmu_sc0002604.1_g000022 Rmu_sc0002922.1_g000011 Rmu_sc0003008.1_g000009 Rmu_sc0003221.1_g000061 Rmu_sc0003221.1_g000062 Rmu_sc0003459.1_g000014 Rmu_sc0003480.1_g000015 Rmu_sc0003541.1_g000016 Rmu_sc0003541.1_g000020 Rmu_sc0004035.1_g000001 Rmu_sc0004035.1_g000005 Rmu_sc0004035.1_g000011 Rmu_sc0004142.1_g000004 Rmu_sc0004142.1_g000010 Rmu_sc0004353.1_g000008 Rmu_sc0004616.1_g000009 Rmu_sc0004616.1_g000010 Rmu_sc0005231.1_g000004 Rmu_sc0006380.1_g000025 Rmu_sc0006492.1_g000010 Rmu_sc0006895.1_g000001 Rmu_sc0006895.1_g000002 Rmu_sc0006895.1_g000005 Rmu_sc0007034.1_g000004 Rmu_sc0007104.1_g000006 Rmu_sc0008990.1_g000003 Rmu_sc0008990.1_g000004 Rmu_sc0009106.1_g000003 Rmu_sc0009516.1_g000002 Rmu_sc0009516.1_g000003 Rmu_sc0009516.1_g000004 Rmu_sc0009516.1_g000005 Rmu_sc0009645.1_g000001 Rmu_sc0010274.1_g000001 Rmu_sc0010274.1_g000002 Rmu_sc0010419.1_g000003 Rmu_sc0010917.1_g000017 Rmu_sc0011213.1_g000001 Rmu_sc0011228.1_g000007 Rmu_sc0011538.1_g000011 Rmu_sc0011538.1_g000014 Rmu_sc0011538.1_g000015 Rmu_sc0012211.1_g000006 Rmu_sc0012351.1_g000003 Rmu_sc0012351.1_g000005 Rmu_sc0012915.1_g000002 Rmu_sc0013088.1_g000001 Rmu_sc0013459.1_g000001 Rmu_sc0013765.1_g000004 Rmu_sc0013765.1_g000005 Rmu_sc0014003.1_g000012 Rmu_sc0014003.1_g000014 Rmu_sc0014698.1_g000001 Rmu_sc0015740.1_g000001 Rmu_sc0016429.1_g000003 Rmu_sc0018885.1_g000001 Rmu_sc0020345.1_g000001 Rmu_sc0027791.1_g000001 Rmu_sc0037325.1_g000001 Rmu_ssc0000010.1_g000024 Rmu_ssc0000010.1_g000025 Rmu_ssc0000083.1_g000021 Rmu_ssc0000340.1_g000002 Rmu_ssc0000386.1_g000002 Rmu_ssc0000386.1_g000024 Rmu_ssc0000386.1_g000025 Rmu_ssc0000386.1_g000034 Rmu_ssc0000386.1_g000037 Rmu_ssc0000477.1_g000001
rosa_roxburghii Rroxscaffold_161G00448010 Rroxscaffold_164G00436080 Rroxscaffold_1G00024500 Rroxscaffold_2G00124290 Rroxscaffold_3G00222940 Rroxscaffold_3G00227440 Rroxscaffold_4G00304810 Rroxscaffold_4G00330180 Rroxscaffold_4G00330200 Rroxscaffold_5G00356620 Rroxscaffold_5G00358170 Rroxscaffold_5G00360880 Rroxscaffold_5G00361220 Rroxscaffold_5G00361950 Rroxscaffold_5G00361960 Rroxscaffold_5G00361990 Rroxscaffold_5G00362370 Rroxscaffold_5G00364540 Rroxscaffold_5G00364550 Rroxscaffold_5G00364580 Rroxscaffold_5G00364600 Rroxscaffold_6G00393290 Rroxscaffold_6G00412680 Rroxscaffold_6G00412790 Rroxscaffold_6G00413470 Rroxscaffold_6G00413720 Rroxscaffold_6G00416070 Rroxscaffold_7G00205400
rosa_rugosa Rorug01G0017300 Rorug01G0017400 Rorug01G0018000 Rorug01G0018100 Rorug01G0211500 Rorug02G0638200 Rorug03G0070000 Rorug03G0071200 Rorug03G0081000 Rorug03G0086500 Rorug03G0089300 Rorug03G0095300 Rorug03G0096000 Rorug03G0096000 Rorug04G0055000 Rorug04G0078300 Rorug04G0104100.1 Rorug04G0113800 Rorug04G0126700 Rorug04G0128000 Rorug04G0145900 Rorug04G0148700 Rorug04G0149100 Rorug04G0149100 Rorug04G0149200 Rorug04G0149300 Rorug04G0154900 Rorug04G0180400 Rorug04G0180500 Rorug04G0180700 Rorug04G0180800 Rorug04G0401500 Rorug04G0402100 Rorug05G0288600 Rorug05G0334100 Rorug07G0176400
rosa_samantha Rh1DG043200 Rh1DG043500 Rh1DG043900 Rh1DG222800 Rh3CG039900 Rh3CG156200 Rh3CG328500 Rh3CG328800 Rh3DG165000 Rh4AG208400 Rh4BG205600 Rh4BG213900 Rh4BG243900 Rh4CG198800 Rh4DG168600 Rh4DG180100 Rh4DG180300 Rh4DG180600 Rh4DG181200 Rh4DG181600 Rh4DG181700 Rh4DG183700 Rh4DG184000 Rh4DG184400 Rh4DG184700 Rh4DG206100 Rh4DG206200 Rh4DG206300 Rh4DG215600 Rh4DG238700 Rh4DG238900 Rh5DG390300
rosa_wichuraiana Rw0G005050 Rw0G009260 Rw0G009280 Rw0G015600 Rw0G023570 Rw1G002140 Rw1G002170 Rw1G002210 Rw1G002240 Rw1G019500 Rw2G015490 Rw3G003020 Rw3G010900 Rw3G012030 Rw3G012790 Rw3G013050 Rw3G013540 Rw3G013640 Rw3G013650 Rw3G026050 Rw3G026070 Rw4G015740 Rw4G015790 Rw4G015910 Rw4G015930 Rw4G015950 Rw4G017900 Rw4G017930 Rw4G018440 Rw4G018450 Rw4G018530 Rw4G020720 Rw4G020760 Rw5G019250 Rw5G034370 Rw7G018700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 224, 237, 290
Acc36I ACCTGC 1 cut(s) 1231
Acc65I GGTACC 1 cut(s) 2245
AccB1I GGYRCC 1 cut(s) 2245
AccB7I CCANNNNNTGG 1 cut(s) 2326
AccII CGCG 1 cut(s) 105
AccIII TCCGGA 2 cut(s) 2463, 2604
AciI CCGC 4 cut(s) 103, 193, 481, 1160
AclWI GGATC 5 cut(s) 555, 1076, 1277, 1375, 2447
AcoI YGGCCR 1 cut(s) 618
AcsI RAATTY 5 cut(s) 512, 940, 1766, 1969, 2012
AcuI CTGAAG 5 cut(s) 198, 1086, 1859, 2379, 2519
AfaI GTAC 5 cut(s) 9, 704, 873, 2247, 2271
AfiI CCNNNNNNNGG 4 cut(s) 1421, 2266, 2326, 2509
AflII CTTAAG 3 cut(s) 1786, 1829, 2209
AflIII ACRYGT 3 cut(s) 1654, 1780, 2155
AhdI GACNNNNNGTC 1 cut(s) 2494
AjiI CACGTC 1 cut(s) 790
AjnI CCWGG 2 cut(s) 303, 1496
AjuI GAANNNNNNNTTGG 4 cut(s) 810, 842, 2174, 2206
Alw21I GWGCWC 1 cut(s) 2199
Alw26I GTCTC 8 cut(s) 73, 290, 359, 1022, 1472, 1750, 1793, 2463
Alw44I GTGCAC 1 cut(s) 2195
AlwI GGATC 5 cut(s) 555, 1076, 1277, 1375, 2447
Ama87I CYCGRG 1 cut(s) 1346
Aor13HI TCCGGA 2 cut(s) 2463, 2604
AoxI GGCC 4 cut(s) 201, 618, 637, 2128
ApaLI GTGCAC 1 cut(s) 2195
ApeKI GCWGC 4 cut(s) 164, 416, 461, 464
ApoI RAATTY 5 cut(s) 512, 940, 1766, 1969, 2012
Asp700I GAANNNNTTC 2 cut(s) 603, 1008
Asp718I GGTACC 1 cut(s) 2245
AspA2I CCTAGG 3 cut(s) 640, 1013, 2503
AspLEI GCGC 2 cut(s) 1340, 1719
AspS9I GGNCC 3 cut(s) 201, 1053, 2087
AvaI CYCGRG 1 cut(s) 1346
AvaII GGWCC 2 cut(s) 1053, 2087
AvrII CCTAGG 3 cut(s) 640, 1013, 2503
BaeGI GKGCMC 1 cut(s) 2199
BalI TGGCCA 1 cut(s) 620
BanI GGYRCC 1 cut(s) 2245
BanII GRGCYC 1 cut(s) 2517
BarI GAAGNNNNNNTAC 2 cut(s) 40, 72
BbsI GAAGAC 1 cut(s) 1142
Bbv12I GWGCWC 1 cut(s) 2199
BbvI GCAGC 4 cut(s) 151, 428, 473, 476
BccI CCATC 9 cut(s) 355, 610, 1387, 1419, 1627, 2159, 2270, 2405, 2605
BceAI ACGGC 1 cut(s) 2440
BciT130I CCWGG 2 cut(s) 305, 1498
BciVI GTATCC 1 cut(s) 1603
BclI TGATCA 2 cut(s) 70, 1974
BcoDI GTCTC 8 cut(s) 73, 290, 359, 1022, 1472, 1750, 1793, 2463
BfmI CTRYAG 1 cut(s) 1512
BfrI CTTAAG 3 cut(s) 1786, 1829, 2209
BfuAI ACCTGC 1 cut(s) 1231
BfuI GTATCC 1 cut(s) 1603
BglII AGATCT 2 cut(s) 1105, 1858
BisI GCNGC 5 cut(s) 165, 417, 462, 465, 1161
BlnI CCTAGG 3 cut(s) 640, 1013, 2503
BlsI GCNGC 5 cut(s) 166, 418, 463, 466, 1162
Bme1390I CCNGG 2 cut(s) 305, 1498
Bme18I GGWCC 2 cut(s) 1053, 2087
BmeRI GACNNNNNGTC 1 cut(s) 2494
BmeT110I CYCGRG 1 cut(s) 1346
BmgBI CACGTC 1 cut(s) 790
BmgT120I GGNCC 3 cut(s) 201, 1053, 2087
BmiI GGNNCC 5 cut(s) 101, 1357, 1668, 2247, 2286
BmrFI CCNGG 2 cut(s) 305, 1498
BpiI GAAGAC 1 cut(s) 1142
BpmI CTGGAG 2 cut(s) 816, 821
BpuEI CTTGAG 4 cut(s) 341, 1383, 1867, 2002
Bsa29I ATCGAT 1 cut(s) 2656
BsaAI YACGTR 1 cut(s) 1781
BsaBI GATNNNNATC 1 cut(s) 2438
BsaI GGTCTC 2 cut(s) 290, 1750
BsaJI CCNNGG 6 cut(s) 393, 640, 984, 1013, 1934, 2503
BsaWI WCCGGW 2 cut(s) 2463, 2604
BsaXI ACNNNNNCTCC 5 cut(s) 30, 2355, 2358, 2385, 2388
Bsc4I CCNNNNNNNGG 4 cut(s) 1421, 2266, 2326, 2509
Bse118I RCCGGY 1 cut(s) 32
Bse1I ACTGG 2 cut(s) 420, 799
Bse3DI GCAATG 2 cut(s) 1128, 1210
Bse8I GATNNNNATC 1 cut(s) 2438
BseAI TCCGGA 2 cut(s) 2463, 2604
BseBI CCWGG 2 cut(s) 305, 1498
BseCI ATCGAT 1 cut(s) 2656
BseDI CCNNGG 6 cut(s) 393, 640, 984, 1013, 1934, 2503
BseJI GATNNNNATC 1 cut(s) 2438
BseLI CCNNNNNNNGG 4 cut(s) 1421, 2266, 2326, 2509
BseMI GCAATG 2 cut(s) 1128, 1210
BseMII CTCAG 3 cut(s) 678, 1274, 1794
BseNI ACTGG 2 cut(s) 420, 799
BseRI GAGGAG 2 cut(s) 2093, 2379
BseSI GKGCMC 1 cut(s) 2199
BseXI GCAGC 4 cut(s) 151, 428, 473, 476
BseYI CCCAGC 2 cut(s) 2021, 2420
BsgI GTGCAG 2 cut(s) 480, 2509
Bsh1236I CGCG 1 cut(s) 105
BshFI GGCC 4 cut(s) 203, 620, 639, 2130
BshNI GGYRCC 1 cut(s) 2245
BshVI ATCGAT 1 cut(s) 2656
BsiHKAI GWGCWC 1 cut(s) 2199
BsiHKCI CYCGRG 1 cut(s) 1346
BsiSI CCGG 3 cut(s) 33, 2464, 2605
BslFI GGGAC 3 cut(s) 441, 1139, 2403
BslI CCNNNNNNNGG 4 cut(s) 1421, 2266, 2326, 2509
BsmAI GTCTC 8 cut(s) 73, 290, 359, 1022, 1472, 1750, 1793, 2463
BsmBI CGTCTC 2 cut(s) 359, 2463
BsmFI GGGAC 3 cut(s) 441, 1139, 2403
BsmI GAATGC 1 cut(s) 774
BsnI GGCC 4 cut(s) 203, 620, 639, 2130
Bso31I GGTCTC 2 cut(s) 290, 1750
BsoBI CYCGRG 1 cut(s) 1346
Bsp1286I GDGCHC 2 cut(s) 2199, 2517
Bsp13I TCCGGA 2 cut(s) 2463, 2604
BspACI CCGC 4 cut(s) 103, 193, 481, 1160
BspANI GGCC 4 cut(s) 203, 620, 639, 2130
BspCNI CTCAG 3 cut(s) 677, 1275, 1795
BspDI ATCGAT 1 cut(s) 2656
BspEI TCCGGA 2 cut(s) 2463, 2604
BspFNI CGCG 1 cut(s) 105
BspHI TCATGA 3 cut(s) 169, 1627, 1642
BspLI GGNNCC 5 cut(s) 101, 1357, 1668, 2247, 2286
BspMI ACCTGC 1 cut(s) 1231
BspPI GGATC 5 cut(s) 555, 1076, 1277, 1375, 2447
BspT107I GGYRCC 1 cut(s) 2245
BspTI CTTAAG 3 cut(s) 1786, 1829, 2209
BspTNI GGTCTC 2 cut(s) 290, 1750
BsrDI GCAATG 2 cut(s) 1128, 1210
BsrFI RCCGGY 1 cut(s) 32
BsrI ACTGG 2 cut(s) 420, 799
BssAI RCCGGY 1 cut(s) 32
BssECI CCNNGG 6 cut(s) 393, 640, 984, 1013, 1934, 2503
BssT1I CCWWGG 6 cut(s) 393, 640, 984, 1013, 1934, 2503
Bst2UI CCWGG 2 cut(s) 305, 1498
Bst4CI ACNGT 2 cut(s) 1952, 2400
Bst6I CTCTTC 3 cut(s) 102, 209, 2538
BstAFI CTTAAG 3 cut(s) 1786, 1829, 2209
BstBAI YACGTR 1 cut(s) 1781
BstC8I GCNNGC 9 cut(s) 34, 195, 367, 414, 661, 1904, 2188, 2453, 2594
BstDEI CTNAG 5 cut(s) 664, 1191, 1283, 1803, 2567
BstEII GGTNACC 1 cut(s) 1424
BstFNI CGCG 1 cut(s) 105
BstHHI GCGC 2 cut(s) 1340, 1719
BstMAI GTCTC 8 cut(s) 73, 290, 359, 1022, 1472, 1750, 1793, 2463
BstMWI GCNNNNNNNGC 5 cut(s) 239, 330, 989, 1337, 2183
BstNI CCWGG 2 cut(s) 305, 1498
BstNSI RCATGY 4 cut(s) 1658, 2159, 2455, 2596
BstPI GGTNACC 1 cut(s) 1424
BstSCI CCNGG 2 cut(s) 303, 1496
BstSFI CTRYAG 1 cut(s) 1512
BstSLI GKGCMC 1 cut(s) 2199
BstUI CGCG 1 cut(s) 105
BstV1I GCAGC 4 cut(s) 151, 428, 473, 476
BstV2I GAAGAC 1 cut(s) 1142
BstX2I RGATCY 3 cut(s) 1081, 1105, 1858
BstYI RGATCY 3 cut(s) 1081, 1105, 1858
Bsu15I ATCGAT 1 cut(s) 2656
BsuI GTATCC 1 cut(s) 1603
BsuRI GGCC 4 cut(s) 203, 620, 639, 2130
BsuTUI ATCGAT 1 cut(s) 2656
BtrI CACGTC 1 cut(s) 790
BtsIMutI CAGTG 1 cut(s) 427
BveI ACCTGC 1 cut(s) 1231
Cac8I GCNNGC 9 cut(s) 34, 195, 367, 414, 661, 1904, 2188, 2453, 2594
CciI TCATGA 3 cut(s) 169, 1627, 1642
CfoI GCGC 2 cut(s) 1340, 1719
Cfr10I RCCGGY 1 cut(s) 32
Cfr13I GGNCC 3 cut(s) 201, 1053, 2087
ClaI ATCGAT 1 cut(s) 2656
Csp6I GTAC 5 cut(s) 8, 703, 872, 2246, 2270
CviQI GTAC 5 cut(s) 8, 703, 872, 2246, 2270
DdeI CTNAG 5 cut(s) 664, 1191, 1283, 1803, 2567
DriI GACNNNNNGTC 1 cut(s) 2494
EaeI YGGCCR 1 cut(s) 618
Eam1104I CTCTTC 3 cut(s) 102, 209, 2538
Eam1105I GACNNNNNGTC 1 cut(s) 2494
EarI CTCTTC 3 cut(s) 102, 209, 2538
Eco130I CCWWGG 6 cut(s) 393, 640, 984, 1013, 1934, 2503
Eco147I AGGCCT 1 cut(s) 639
Eco24I GRGCYC 1 cut(s) 2517
Eco31I GGTCTC 2 cut(s) 290, 1750
Eco32I GATATC 3 cut(s) 88, 1853, 2352
Eco47I GGWCC 2 cut(s) 1053, 2087
Eco57I CTGAAG 5 cut(s) 198, 1086, 1859, 2379, 2519
Eco88I CYCGRG 1 cut(s) 1346
Eco91I GGTNACC 1 cut(s) 1424
EcoO109I RGGNCCY 1 cut(s) 2087
EcoO65I GGTNACC 1 cut(s) 1424
EcoRI GAATTC 1 cut(s) 512
EcoRII CCWGG 2 cut(s) 303, 1496
EcoRV GATATC 3 cut(s) 88, 1853, 2352
EcoT14I CCWWGG 6 cut(s) 393, 640, 984, 1013, 1934, 2503
EcoT22I ATGCAT 1 cut(s) 1563
EcoT38I GRGCYC 1 cut(s) 2517
ErhI CCWWGG 6 cut(s) 393, 640, 984, 1013, 1934, 2503
Esp3I CGTCTC 2 cut(s) 359, 2463
FalI AAGNNNNNCTT 6 cut(s) 217, 249, 2174, 2206, 2192, 2224
FaqI GGGAC 3 cut(s) 441, 1139, 2403
FauI CCCGC 2 cut(s) 186, 474
FauNDI CATATG 1 cut(s) 781
FbaI TGATCA 2 cut(s) 70, 1974
Fnu4HI GCNGC 5 cut(s) 165, 417, 462, 465, 1161
FriOI GRGCYC 1 cut(s) 2517
Fsp4HI GCNGC 5 cut(s) 165, 417, 462, 465, 1161
GlaI GCGC 2 cut(s) 1339, 1718
GluI GCNGC 5 cut(s) 165, 417, 462, 465, 1161
GsaI CCCAGC 2 cut(s) 2025, 2424
GsuI CTGGAG 2 cut(s) 816, 821
HaeIII GGCC 4 cut(s) 203, 620, 639, 2130
HapII CCGG 3 cut(s) 33, 2464, 2605
HhaI GCGC 2 cut(s) 1340, 1719
Hin6I GCGC 2 cut(s) 1338, 1717
HinP1I GCGC 2 cut(s) 1338, 1717
HincII GTYRAC 2 cut(s) 2220, 2403
HindII GTYRAC 2 cut(s) 2220, 2403
HindIII AAGCTT 2 cut(s) 1177, 2305
HpaI GTTAAC 1 cut(s) 2220
HpaII CCGG 3 cut(s) 33, 2464, 2605
Hpy166II GTNNAC 3 cut(s) 2197, 2220, 2403
Hpy8I GTNNAC 3 cut(s) 2197, 2220, 2403
Hpy99I CGWCG 1 cut(s) 791
HpyCH4III ACNGT 2 cut(s) 1952, 2400
HpyCH4IV ACGT 3 cut(s) 789, 882, 1780
HpyF10VI GCNNNNNNNGC 5 cut(s) 239, 330, 989, 1337, 2183
HpyF3I CTNAG 5 cut(s) 664, 1191, 1283, 1803, 2567
HpySE526I ACGT 3 cut(s) 789, 882, 1780
HspAI GCGC 2 cut(s) 1338, 1717
Kpn2I TCCGGA 2 cut(s) 2463, 2604
KpnI GGTACC 1 cut(s) 2249
KroI GCCGGC 1 cut(s) 32
KroNI GCCGGC 1 cut(s) 34
Ksp22I TGATCA 2 cut(s) 70, 1974
KspAI GTTAAC 1 cut(s) 2220
LmnI GCTCC 3 cut(s) 797, 1096, 2607
Lsp1109I GCAGC 4 cut(s) 151, 428, 473, 476
MaeII ACGT 3 cut(s) 789, 882, 1780
MaeIII GTNAC 9 cut(s) 52, 667, 790, 967, 1424, 2204, 2294, 2486, 2558
MfeI CAATTG 3 cut(s) 74, 1362, 2120
MflI RGATCY 3 cut(s) 1081, 1105, 1858
MhlI GDGCHC 2 cut(s) 2199, 2517
MlsI TGGCCA 1 cut(s) 620
MluNI TGGCCA 1 cut(s) 620
MlyI GAGTC 7 cut(s) 75, 423, 1024, 1474, 1901, 2212, 2438
MmeI TCCRAC 3 cut(s) 520, 612, 1408
Mox20I TGGCCA 1 cut(s) 620
Mph1103I ATGCAT 1 cut(s) 1563
MroI TCCGGA 2 cut(s) 2463, 2604
MroNI GCCGGC 1 cut(s) 32
MroXI GAANNNNTTC 2 cut(s) 603, 1008
MscI TGGCCA 1 cut(s) 620
MslI CAYNNNNRTG 1 cut(s) 2227
Msp20I TGGCCA 1 cut(s) 620
MspA1I CMGCKG 1 cut(s) 2357
MspCI CTTAAG 3 cut(s) 1786, 1829, 2209
MspI CCGG 3 cut(s) 33, 2464, 2605
MspR9I CCNGG 2 cut(s) 305, 1498
MunI CAATTG 3 cut(s) 74, 1362, 2120
Mva1269I GAATGC 1 cut(s) 774
MvaI CCWGG 2 cut(s) 305, 1498
MvnI CGCG 1 cut(s) 105
MwoI GCNNNNNNNGC 5 cut(s) 239, 330, 989, 1337, 2183
NaeI GCCGGC 1 cut(s) 34
NdeI CATATG 1 cut(s) 781
NgoMIV GCCGGC 1 cut(s) 32
NlaIV GGNNCC 5 cut(s) 101, 1357, 1668, 2247, 2286
NmeAIII GCCGAG 2 cut(s) 300, 411
NmuCI GTSAC 6 cut(s) 52, 790, 967, 1424, 2204, 2486
NsiI ATGCAT 1 cut(s) 1563
NspI RCATGY 4 cut(s) 1658, 2159, 2455, 2596
PaeI GCATGC 2 cut(s) 2455, 2596
PaeR7I CTCGAG 1 cut(s) 1346
PagI TCATGA 3 cut(s) 169, 1627, 1642
PceI AGGCCT 1 cut(s) 639
PciI ACATGT 2 cut(s) 1654, 2155
PctI GAATGC 1 cut(s) 774
PdiI GCCGGC 1 cut(s) 34
PdmI GAANNNNTTC 2 cut(s) 603, 1008
PflMI CCANNNNNTGG 1 cut(s) 2326
PkrI GCNGC 5 cut(s) 166, 418, 463, 466, 1162
PleI GAGTC 7 cut(s) 75, 423, 1024, 1474, 1900, 2211, 2437
PpsI GAGTC 7 cut(s) 75, 423, 1024, 1474, 1900, 2211, 2437
Ppu21I YACGTR 1 cut(s) 1781
PpuMI RGGWCCY 1 cut(s) 2087
PscI ACATGT 2 cut(s) 1654, 2155
PsiI TTATAA 3 cut(s) 224, 237, 290
Psp5II RGGWCCY 1 cut(s) 2087
Psp6I CCWGG 2 cut(s) 303, 1496
PspEI GGTNACC 1 cut(s) 1424
PspFI CCCAGC 2 cut(s) 2021, 2420
PspGI CCWGG 2 cut(s) 303, 1496
PspN4I GGNNCC 5 cut(s) 101, 1357, 1668, 2247, 2286
PspPI GGNCC 3 cut(s) 201, 1053, 2087
PspPPI RGGWCCY 1 cut(s) 2087
PsuI RGATCY 3 cut(s) 1081, 1105, 1858
PvuII CAGCTG 1 cut(s) 2357
RsaI GTAC 5 cut(s) 9, 704, 873, 2247, 2271
RsaNI GTAC 5 cut(s) 8, 703, 872, 2246, 2270
RseI CAYNNNNRTG 1 cut(s) 2227
SatI GCNGC 5 cut(s) 165, 417, 462, 465, 1161
Sau96I GGNCC 3 cut(s) 201, 1053, 2087
SchI GAGTC 7 cut(s) 75, 423, 1024, 1474, 1901, 2212, 2438
ScrFI CCNGG 2 cut(s) 305, 1498
SduI GDGCHC 2 cut(s) 2199, 2517
SfcI CTRYAG 1 cut(s) 1512
Sfr274I CTCGAG 1 cut(s) 1346
SinI GGWCC 2 cut(s) 1053, 2087
SlaI CTCGAG 1 cut(s) 1346
SmiMI CAYNNNNRTG 1 cut(s) 2227
SmlI CTYRAG 8 cut(s) 356, 1346, 1398, 1786, 1829, 1846, 1981, 2209
SmoI CTYRAG 8 cut(s) 356, 1346, 1398, 1786, 1829, 1846, 1981, 2209
SphI GCATGC 2 cut(s) 2455, 2596
SseBI AGGCCT 1 cut(s) 639
SsiI CCGC 4 cut(s) 103, 193, 481, 1160
SspI AATATT 2 cut(s) 604, 2476
StuI AGGCCT 1 cut(s) 639
StyD4I CCNGG 2 cut(s) 303, 1496
StyI CCWWGG 6 cut(s) 393, 640, 984, 1013, 1934, 2503
TaaI ACNGT 2 cut(s) 1952, 2400
TaiI ACGT 3 cut(s) 792, 885, 1783
TaqI TCGA 7 cut(s) 84, 766, 1347, 1651, 2394, 2432, 2656
TatI WGTACW 2 cut(s) 7, 871
TauI GCSGC 1 cut(s) 1163
TscAI CASTG 1 cut(s) 427
TseFI GTSAC 6 cut(s) 52, 790, 967, 1424, 2204, 2486
TseI GCWGC 4 cut(s) 164, 416, 461, 464
Tsp45I GTSAC 6 cut(s) 52, 790, 967, 1424, 2204, 2486
TspGWI ACGGA 3 cut(s) 2024, 2279, 2331
TspRI CASTG 1 cut(s) 427
Van91I CCANNNNNTGG 1 cut(s) 2326
Vha464I CTTAAG 3 cut(s) 1786, 1829, 2209
VneI GTGCAC 1 cut(s) 2195
VpaK11BI GGWCC 2 cut(s) 1053, 2087
XapI RAATTY 5 cut(s) 512, 940, 1766, 1969, 2012
XbaI TCTAGA 3 cut(s) 1024, 1108, 1855
XceI RCATGY 4 cut(s) 1658, 2159, 2455, 2596
XcmI CCANNNNNNNNNTGG 2 cut(s) 628, 1418
XhoI CTCGAG 1 cut(s) 1346
XmaJI CCTAGG 3 cut(s) 640, 1013, 2503
XmnI GAANNNNTTC 2 cut(s) 603, 1008
Zsp2I ATGCAT 1 cut(s) 1563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.