RchiOBHm_Chr4g0417641

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
42939216 .. 42940914
1699 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38771

Sequence Viewer

Length: 1602 bp
ATGGTTGTGCTCTCTCTCCTTACTTCTGTTGCCGGAGGAGCGGTGAGTAAGGTGGCTTCACTTGCTAATGATCAATTGGGACTCCAAATCGTCTGCTGTTTCCGCAACGAGCTAAATAAGCTCAAAGAATCCTCAGATCAGATTGGGGATATGATGCATGATGCTGCGCACGAACCCGAAGATCGGAAACTGCGGGCAAGGGCCAGGTGGATGCAGAGGATTATAGGCGTAGCTCATGATGCAGAAGATATCTTGGATGAAGTTCAATATGAAGTAGATCGGATCGTTATAGAGGAGACAAGCCTGGATAAGAAGATACTCGGCTTCTTCTGCAACAATCCTCTTGTATTTCGTCTTCAAATGGCACGCAAGATTCACGACATCAACACATCCTTGGAGAATCTCAAAACGGATGCAGCCAGTGTCGGACTCGCCACGACAATGAGATCAAATGAAGGTGCAGCAAGCAGTCGAGGTAAGGTGGATCGGAAAACATTCTCATCCCTTGAGAAAAATGTAGTCACCCACAAAGATGCAATCATTGTTGGAAGGGATGAGGTTTTGTCAAATATAATTGCAACCCTGACCGACTCCAACAATCAAGAAAAGGTTCTTTCGGTGATGGCCATTGTGGGATTTGGAGGCTTAGGTAAAACAACTTTGGCCCAATTAGTTACCAAGCAACTGAAAGAAGGTGAAATGAAAAAGTACTTTGATCCAACATTCTGGGTGTACGTATCTATAAATTTTGATGTCGATGACATTTTACATCAAATGGTGCAATCATGTGACGCGACGAGAGCCAACCTTTCAAGTCGGGATGCATTGATTGAAAGCCTCCGCGAAAATTTGAGAGAGAAAAGGGTCTTCCTTGTACTTGATGATGTTTGGAATGAAGAAAAAGAAAAATGGGATCTTTTGAAGGGTTGTCTGCTGCAACTAGATTTTGCCAAAGGAAGCACTGTGATTGTCACCACCCGTAGCGGCGAGGTTGCATCAATCATGGAAACACTTGGACGGCCTGATCTGAAAACTCTAACTGATGATGAATGTTGGTCCATATTGAAGGATAGAGCGTTTGCAGACCCTAATGATCCAATAGCTTCAGAACGGGAGGGAATCGGAAGGGAGCTTGCCAAAAAGTGTGCTGGTCTTCCATTGGCGGCAAGGGTTTTGGGAAGCTTGATGCATTCTAAGATTAGTCAAAGCGAATGGTCGTCAATTCTGGAAAGTAAAATATGGCAGTTATCATCAAACAAAGAAACTAGCTGGATCATGTTAGTTTTAATGTTGAGTTTTGACAATTTGGAATCACCGTTGAAACAATGTTTTGCATATTGCTCAATGCTCAAGAGAGGTTCCCTAATTGAAAGAGATTACTTAATCCAACTATGGATGGGTCAAGGTTTGCTCCAGCCTTCTACTGAACAAAGGAAGCAAAAGATGGAGATGGAGGATGTAGGCGATGAGTATTTTAATACTCTACTGAAGAACTCCTTGCTTGAAGATGCTACAAAAGGTATGGATGCCATTATCACCAAATGCAAGATGCACGATCTTCTGAATGATCTTGCAATAGAAGTATCCAAGTGTCACTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

533

Amino Acids

59.88

Weight (kDa)

5.38

Isoelectric Point (pI)

41.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 14 - 94 3.8e-09 Rx N-terminal domain
NB-ARC PF00931 187 - 362 3.1e-32 NB-ARC domain
AAA_22 PF13401 207 - 299 3.1e-07 AAA domain
WHD_DRP PF23559 453 - 525 2.6e-18 Disease resistance protein Winged helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000029)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13530 FvH4_4g18270 FvH4_6g12200 FvH4_6g12460 FvH4_6g12461 FvH4_6g13450 FvH4_6g15090 FvH4_6g15220 FvH4_6g15230 FvH4_6g15250 FvH4_6g15251 FvH4_6g15340 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47980 FvH4_6g47980 FvH4_6g47980 FvH4_6g48170 FvH4_6g48310 FvH4_6g48310 FvH4_6g48850 FvH4_6g48881 FvH4_7g11830
malus_domestica MD02G1059900.v1.1 MD02G1069600.v1.1 MD02G1069700.v1.1 MD02G1070100.v1.1 MD02G1070200.v1.1 MD02G1070300.v1.1 MD02G1070800.v1.1 MD02G1070900.v1.1 MD02G1071200.v1.1 MD02G1071400.v1.1 MD02G1071900.v1.1 MD02G1075200.v1.1 MD03G1048000.v1.1 MD03G1049100.v1.1 MD03G1049200.v1.1 MD03G1052500.v1.1 MD03G1054100.v1.1 MD03G1054300.v1.1 MD03G1054400.v1.1 MD04G1113400.v1.1 MD04G1211100.v1.1 MD04G1211200.v1.1 MD05G1174900.v1.1 MD05G1175000.v1.1 MD05G1175900.v1.1 MD05G1243400.v1.1 MD07G1031500.v1.1 MD07G1031600.v1.1 MD07G1032500.v1.1 MD11G1046800.v1.1 MD11G1046900.v1.1 MD11G1047000.v1.1 MD11G1050400.v1.1 MD11G1050600.v1.1 MD11G1050800.v1.1 MD11G1051100.v1.1 MD11G1051600.v1.1 MD11G1051700.v1.1 MD11G1054600.v1.1 MD11G1055600.v1.1 MD11G1055700.v1.1 MD11G1055800.v1.1 MD11G1056000.v1.1 MD12G1126600.v1.1 MD12G1126700.v1.1 MD12G1126800.v1.1 MD12G1127300.v1.1 MD12G1127600.v1.1 MD12G1127900.v1.1 MD12G1128100.v1.1 MD12G1128300.v1.1 MD15G1261500.v1.1
prunus_persica Prupe.1G010700_v2.0.a1 Prupe.1G010800_v2.0.a1 Prupe.1G011000_v2.0.a1 Prupe.1G159600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163700_v2.0.a1 Prupe.1G163700_v2.0.a1 Prupe.1G163800_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G235500_v2.0.a1 Prupe.2G067400_v2.0.a1 Prupe.2G067500_v2.0.a1 Prupe.2G111700_v2.0.a1 Prupe.2G111800_v2.0.a1 Prupe.3G012000_v2.0.a1 Prupe.6G243400_v2.0.a1 Prupe.6G243500_v2.0.a1 Prupe.6G243600_v2.0.a1 Prupe.6G243700_v2.0.a1 Prupe.6G243800_v2.0.a1 Prupe.6G243900_v2.0.a1
pyrus_communis pycom02g04860 pycom02g04880 pycom02g04890 pycom02g05510 pycom02g05520 pycom02g05600 pycom02g05930 pycom02g06000 pycom02g06010 pycom03g03800 pycom03g03860 pycom03g03880 pycom03g03890 pycom03g03910 pycom03g03920 pycom03g04200 pycom03g04290 pycom03g04300 pycom03g04310 pycom03g04320 pycom03g09260 pycom04g10150 pycom04g10160 pycom04g10170 pycom05g16180 pycom05g16190 pycom05g16240 pycom05g21980 pycom05g21990 pycom07g02280 pycom11g03800 pycom11g03810 pycom11g04080 pycom11g04140 pycom11g04150 pycom11g04160 pycom11g04570 pycom11g04580 pycom11g04590 pycom11g04610 pycom12g12470 pycom12g12490 pycom13g22050
rosa_chinensis RchiOBHm_Chr1g0317761 RchiOBHm_Chr1g0317821 RchiOBHm_Chr1g0317831 RchiOBHm_Chr1g0317871 RchiOBHm_Chr1g0350501 RchiOBHm_Chr2g0107631 RchiOBHm_Chr3g0452091 RchiOBHm_Chr3g0464001 RchiOBHm_Chr3g0464281 RchiOBHm_Chr3g0466331 RchiOBHm_Chr3g0467341 RchiOBHm_Chr3g0467381 RchiOBHm_Chr3g0467731 RchiOBHm_Chr3g0468291 RchiOBHm_Chr3g0468321 RchiOBHm_Chr3g0468341 RchiOBHm_Chr3g0468391 RchiOBHm_Chr3g0468411 RchiOBHm_Chr3g0468571 RchiOBHm_Chr3g0468591 RchiOBHm_Chr3g0490721 RchiOBHm_Chr3g0490751 RchiOBHm_Chr3g0490761 RchiOBHm_Chr3g0490771 RchiOBHm_Chr3g0490951 RchiOBHm_Chr3g0491001 RchiOBHm_Chr3g0491011 RchiOBHm_Chr4g0412461 RchiOBHm_Chr4g0414161 RchiOBHm_Chr4g0414181 RchiOBHm_Chr4g0414191 RchiOBHm_Chr4g0414281 RchiOBHm_Chr4g0414441 RchiOBHm_Chr4g0414521 RchiOBHm_Chr4g0414531 RchiOBHm_Chr4g0417011 RchiOBHm_Chr4g0417021 RchiOBHm_Chr4g0417041 RchiOBHm_Chr4g0417071 RchiOBHm_Chr4g0417101 RchiOBHm_Chr4g0417531 RchiOBHm_Chr4g0417641 RchiOBHm_Chr4g0417651 RchiOBHm_Chr4g0417701 RchiOBHm_Chr4g0417731 RchiOBHm_Chr4g0417741 RchiOBHm_Chr4g0417781 RchiOBHm_Chr4g0418751 RchiOBHm_Chr4g0418791 RchiOBHm_Chr4g0418861 RchiOBHm_Chr4g0418881 RchiOBHm_Chr4g0418901 RchiOBHm_Chr4g0422451 RchiOBHm_Chr4g0422461 RchiOBHm_Chr4g0422471 RchiOBHm_Chr4g0422541 RchiOBHm_Chr4g0422561 RchiOBHm_Chr4g0422591 RchiOBHm_Chr4g0422651 RchiOBHm_Chr4g0422661 RchiOBHm_Chr5g0003251 RchiOBHm_Chr5g0003261 RchiOBHm_Chr5g0055871 RchiOBHm_Chr7g0204701 RchiOBHm_Chr7g0204741
rosa_laevigata RLG00000007607 RLG00000007932 RLG00000017606 RLG00000024418 RLG00000025629 RLG00000030586
rosa_multiflora Rmu_co7959167.1_g000001 Rmu_co8021330.1_g000001 Rmu_co8132128.1_g000001 Rmu_co8224744.1_g000001 Rmu_co8281865.1_g000001 Rmu_co8298487.1_g000001 Rmu_co8319035.1_g000001 Rmu_co8380035.1_g000001 Rmu_co8385371.1_g000001 Rmu_co8398173.1_g000001 Rmu_co8423363.1_g000001 Rmu_co8438275.1_g000001 Rmu_co8474729.1_g000001 Rmu_sc0000057.1_g000008 Rmu_sc0000350.1_g000023 Rmu_sc0000480.1_g000005 Rmu_sc0000654.1_g000021 Rmu_sc0000654.1_g000029 Rmu_sc0000654.1_g000032 Rmu_sc0000654.1_g000041 Rmu_sc0000654.1_g000045 Rmu_sc0000772.1_g000002 Rmu_sc0000772.1_g000041 Rmu_sc0000808.1_g000040 Rmu_sc0000830.1_g000062 Rmu_sc0000830.1_g000065 Rmu_sc0000830.1_g000072 Rmu_sc0000830.1_g000073 Rmu_sc0000935.1_g000020 Rmu_sc0000935.1_g000024 Rmu_sc0000935.1_g000026 Rmu_sc0000935.1_g000027 Rmu_sc0000935.1_g000031 Rmu_sc0000935.1_g000033 Rmu_sc0000962.1_g000033 Rmu_sc0000962.1_g000036 Rmu_sc0000962.1_g000063 Rmu_sc0000962.1_g000064 Rmu_sc0000962.1_g000065 Rmu_sc0001029.1_g000007 Rmu_sc0001063.1_g000014 Rmu_sc0001149.1_g000010 Rmu_sc0001149.1_g000011 Rmu_sc0001358.1_g000009 Rmu_sc0001448.1_g000003 Rmu_sc0001448.1_g000004 Rmu_sc0001729.1_g000005 Rmu_sc0001729.1_g000007 Rmu_sc0001729.1_g000020 Rmu_sc0001729.1_g000023 Rmu_sc0001793.1_g000015 Rmu_sc0002494.1_g000018 Rmu_sc0002494.1_g000019 Rmu_sc0002604.1_g000022 Rmu_sc0002922.1_g000011 Rmu_sc0003008.1_g000009 Rmu_sc0003221.1_g000061 Rmu_sc0003221.1_g000062 Rmu_sc0003459.1_g000014 Rmu_sc0003480.1_g000015 Rmu_sc0003541.1_g000016 Rmu_sc0003541.1_g000020 Rmu_sc0004035.1_g000001 Rmu_sc0004035.1_g000005 Rmu_sc0004035.1_g000011 Rmu_sc0004142.1_g000004 Rmu_sc0004142.1_g000010 Rmu_sc0004353.1_g000008 Rmu_sc0004616.1_g000009 Rmu_sc0004616.1_g000010 Rmu_sc0005231.1_g000004 Rmu_sc0006380.1_g000025 Rmu_sc0006492.1_g000010 Rmu_sc0006895.1_g000001 Rmu_sc0006895.1_g000002 Rmu_sc0006895.1_g000005 Rmu_sc0007034.1_g000004 Rmu_sc0007104.1_g000006 Rmu_sc0008990.1_g000003 Rmu_sc0008990.1_g000004 Rmu_sc0009106.1_g000003 Rmu_sc0009516.1_g000002 Rmu_sc0009516.1_g000003 Rmu_sc0009516.1_g000004 Rmu_sc0009516.1_g000005 Rmu_sc0009645.1_g000001 Rmu_sc0010274.1_g000001 Rmu_sc0010274.1_g000002 Rmu_sc0010419.1_g000003 Rmu_sc0010917.1_g000017 Rmu_sc0011213.1_g000001 Rmu_sc0011228.1_g000007 Rmu_sc0011538.1_g000011 Rmu_sc0011538.1_g000014 Rmu_sc0011538.1_g000015 Rmu_sc0012211.1_g000006 Rmu_sc0012351.1_g000003 Rmu_sc0012351.1_g000005 Rmu_sc0012915.1_g000002 Rmu_sc0013088.1_g000001 Rmu_sc0013459.1_g000001 Rmu_sc0013765.1_g000004 Rmu_sc0013765.1_g000005 Rmu_sc0014003.1_g000012 Rmu_sc0014003.1_g000014 Rmu_sc0014698.1_g000001 Rmu_sc0015740.1_g000001 Rmu_sc0016429.1_g000003 Rmu_sc0018885.1_g000001 Rmu_sc0020345.1_g000001 Rmu_sc0027791.1_g000001 Rmu_sc0037325.1_g000001 Rmu_ssc0000010.1_g000024 Rmu_ssc0000010.1_g000025 Rmu_ssc0000083.1_g000021 Rmu_ssc0000340.1_g000002 Rmu_ssc0000386.1_g000002 Rmu_ssc0000386.1_g000024 Rmu_ssc0000386.1_g000025 Rmu_ssc0000386.1_g000034 Rmu_ssc0000386.1_g000037 Rmu_ssc0000477.1_g000001
rosa_roxburghii Rroxscaffold_161G00448010 Rroxscaffold_164G00436080 Rroxscaffold_1G00024500 Rroxscaffold_2G00124290 Rroxscaffold_3G00222940 Rroxscaffold_3G00227440 Rroxscaffold_4G00304810 Rroxscaffold_4G00330180 Rroxscaffold_4G00330200 Rroxscaffold_5G00356620 Rroxscaffold_5G00358170 Rroxscaffold_5G00360880 Rroxscaffold_5G00361220 Rroxscaffold_5G00361950 Rroxscaffold_5G00361960 Rroxscaffold_5G00361990 Rroxscaffold_5G00362370 Rroxscaffold_5G00364540 Rroxscaffold_5G00364550 Rroxscaffold_5G00364580 Rroxscaffold_5G00364600 Rroxscaffold_6G00393290 Rroxscaffold_6G00412680 Rroxscaffold_6G00412790 Rroxscaffold_6G00413470 Rroxscaffold_6G00413720 Rroxscaffold_6G00416070 Rroxscaffold_7G00205400
rosa_rugosa Rorug01G0017300 Rorug01G0017400 Rorug01G0018000 Rorug01G0018100 Rorug01G0211500 Rorug02G0638200 Rorug03G0070000 Rorug03G0071200 Rorug03G0081000 Rorug03G0086500 Rorug03G0089300 Rorug03G0095300 Rorug03G0096000 Rorug03G0096000 Rorug04G0055000 Rorug04G0078300 Rorug04G0104100.1 Rorug04G0113800 Rorug04G0126700 Rorug04G0128000 Rorug04G0145900 Rorug04G0148700 Rorug04G0149100 Rorug04G0149100 Rorug04G0149200 Rorug04G0149300 Rorug04G0154900 Rorug04G0180400 Rorug04G0180500 Rorug04G0180700 Rorug04G0180800 Rorug04G0401500 Rorug04G0402100 Rorug05G0288600 Rorug05G0334100 Rorug07G0176400
rosa_samantha Rh1DG043200 Rh1DG043500 Rh1DG043900 Rh1DG222800 Rh3CG039900 Rh3CG156200 Rh3CG328500 Rh3CG328800 Rh3DG165000 Rh4AG208400 Rh4BG205600 Rh4BG213900 Rh4BG243900 Rh4CG198800 Rh4DG168600 Rh4DG180100 Rh4DG180300 Rh4DG180600 Rh4DG181200 Rh4DG181600 Rh4DG181700 Rh4DG183700 Rh4DG184000 Rh4DG184400 Rh4DG184700 Rh4DG206100 Rh4DG206200 Rh4DG206300 Rh4DG215600 Rh4DG238700 Rh4DG238900 Rh5DG390300
rosa_wichuraiana Rw0G005050 Rw0G009260 Rw0G009280 Rw0G015600 Rw0G023570 Rw1G002140 Rw1G002170 Rw1G002210 Rw1G002240 Rw1G019500 Rw2G015490 Rw3G003020 Rw3G010900 Rw3G012030 Rw3G012790 Rw3G013050 Rw3G013540 Rw3G013640 Rw3G013650 Rw3G026050 Rw3G026070 Rw4G015740 Rw4G015790 Rw4G015910 Rw4G015930 Rw4G015950 Rw4G017900 Rw4G017930 Rw4G018440 Rw4G018450 Rw4G018530 Rw4G020720 Rw4G020760 Rw5G019250 Rw5G034370 Rw7G018700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 168
AccBSI CCGCTC 1 cut(s) 41
AccII CGCG 2 cut(s) 794, 843
AciI CCGC 6 cut(s) 41, 103, 193, 841, 984, 1163
AclWI GGATC 6 cut(s) 290, 492, 710, 921, 1088, 1280
AcoI YGGCCR 1 cut(s) 624
AcsI RAATTY 2 cut(s) 745, 847
AcuI CTGAAG 2 cut(s) 1089, 1508
AfaI GTAC 3 cut(s) 710, 734, 876
AfiI CCNNNNNNNGG 1 cut(s) 183
AgsI TTSAA 9 cut(s) 266, 359, 813, 833, 922, 1066, 1321, 1370, 1505
AjnI CCWGG 2 cut(s) 203, 303
AluBI AGCT 7 cut(s) 112, 121, 233, 1103, 1132, 1182, 1269
AluI AGCT 7 cut(s) 112, 121, 233, 1103, 1132, 1182, 1269
Alw21I GWGCWC 1 cut(s) 12
Alw26I GTCTC 1 cut(s) 290
AlwI GGATC 6 cut(s) 290, 492, 710, 921, 1088, 1280
AoxI GGCC 4 cut(s) 201, 624, 663, 1019
ApeKI GCWGC 4 cut(s) 164, 416, 461, 934
ApoI RAATTY 2 cut(s) 745, 847
Asp700I GAANNNNTTC 2 cut(s) 494, 609
AspLEI GCGC 1 cut(s) 169
AspS9I GGNCC 3 cut(s) 201, 664, 1056
AsuHPI GGTGA 7 cut(s) 55, 514, 631, 707, 964, 1305, 1528
AvaII GGWCC 1 cut(s) 1056
BalI TGGCCA 1 cut(s) 626
BarI GAAGNNNNNNTAC 4 cut(s) 40, 72, 339, 371
BbsI GAAGAC 3 cut(s) 347, 859, 1145
Bbv12I GWGCWC 1 cut(s) 12
BbvI GCAGC 4 cut(s) 151, 428, 473, 921
BccI CCATC 4 cut(s) 616, 1390, 1438, 1444
BceAI ACGGC 1 cut(s) 1034
BciT130I CCWGG 2 cut(s) 205, 305
BciVI GTATCC 1 cut(s) 1594
BclI TGATCA 1 cut(s) 70
BcoDI GTCTC 1 cut(s) 290
BfaI CTAG 3 cut(s) 941, 1266, 1600
BfuI GTATCC 1 cut(s) 1594
BisI GCNGC 6 cut(s) 165, 417, 462, 935, 985, 1164
BlsI GCNGC 6 cut(s) 166, 418, 463, 936, 986, 1165
BmcAI AGTACT 1 cut(s) 710
Bme1390I CCNGG 2 cut(s) 205, 305
Bme18I GGWCC 1 cut(s) 1056
BmgT120I GGNCC 3 cut(s) 201, 664, 1056
BmiI GGNNCC 1 cut(s) 1360
BmrFI CCNGG 2 cut(s) 205, 305
BpiI GAAGAC 3 cut(s) 347, 859, 1145
BpmI CTGGAG 1 cut(s) 1397
Bpu10I CCTNAGC 1 cut(s) 646
BpuEI CTTGAG 2 cut(s) 527, 1334
BsaAI YACGTR 1 cut(s) 736
BsaJI CCNNGG 1 cut(s) 393
BsaXI ACNNNNNCTCC 2 cut(s) 27, 57
Bsc4I CCNNNNNNNGG 1 cut(s) 183
Bse1I ACTGG 1 cut(s) 420
BseBI CCWGG 2 cut(s) 205, 305
BseDI CCNNGG 1 cut(s) 393
BseLI CCNNNNNNNGG 1 cut(s) 183
BseMII CTCAG 1 cut(s) 147
BseNI ACTGG 1 cut(s) 420
BseRI GAGGAG 2 cut(s) 51, 308
BseXI GCAGC 4 cut(s) 151, 428, 473, 921
BsgI GTGCAG 1 cut(s) 480
Bsh1236I CGCG 2 cut(s) 794, 843
BshFI GGCC 4 cut(s) 203, 626, 665, 1021
BsiHKAI GWGCWC 1 cut(s) 12
BsiSI CCGG 1 cut(s) 33
BslFI GGGAC 1 cut(s) 93
BslI CCNNNNNNNGG 1 cut(s) 183
BsmAI GTCTC 1 cut(s) 290
BsmFI GGGAC 1 cut(s) 93
BsmI GAATGC 1 cut(s) 1189
BsnI GGCC 4 cut(s) 203, 626, 665, 1021
Bsp1286I GDGCHC 1 cut(s) 12
BspACI CCGC 6 cut(s) 41, 103, 193, 841, 984, 1163
BspANI GGCC 4 cut(s) 203, 626, 665, 1021
BspCNI CTCAG 1 cut(s) 146
BspFNI CGCG 2 cut(s) 794, 843
BspHI TCATGA 1 cut(s) 235
BspLI GGNNCC 1 cut(s) 1360
BspPI GGATC 6 cut(s) 290, 492, 710, 921, 1088, 1280
BsrBI CCGCTC 1 cut(s) 41
BsrI ACTGG 1 cut(s) 420
BssECI CCNNGG 1 cut(s) 393
BssT1I CCWWGG 1 cut(s) 393
Bst2UI CCWGG 2 cut(s) 205, 305
Bst4CI ACNGT 2 cut(s) 964, 1317
BstBAI YACGTR 1 cut(s) 736
BstC8I GCNNGC 4 cut(s) 195, 367, 466, 1134
BstDEI CTNAG 3 cut(s) 133, 646, 1194
BstFNI CGCG 2 cut(s) 794, 843
BstHHI GCGC 1 cut(s) 169
BstMAI GTCTC 1 cut(s) 290
BstMWI GCNNNNNNNGC 7 cut(s) 38, 62, 102, 118, 239, 330, 800
BstNI CCWGG 2 cut(s) 205, 305
BstSCI CCNGG 2 cut(s) 203, 303
BstSNI TACGTA 1 cut(s) 736
BstUI CGCG 2 cut(s) 794, 843
BstV1I GCAGC 4 cut(s) 151, 428, 473, 921
BstV2I GAAGAC 3 cut(s) 347, 859, 1145
BstX2I RGATCY 1 cut(s) 913
BstXI CCANNNNNNTGG 1 cut(s) 726
BstYI RGATCY 1 cut(s) 913
BsuI GTATCC 1 cut(s) 1594
BsuRI GGCC 4 cut(s) 203, 626, 665, 1021
BtgZI GCGATG 1 cut(s) 1479
BtsIMutI CAGTG 2 cut(s) 427, 960
Cac8I GCNNGC 4 cut(s) 195, 367, 466, 1134
CciI TCATGA 1 cut(s) 235
CfoI GCGC 1 cut(s) 169
Cfr13I GGNCC 3 cut(s) 201, 664, 1056
CseI GACGC 1 cut(s) 800
Csp6I GTAC 3 cut(s) 709, 733, 875
CviAII CATG 5 cut(s) 158, 236, 786, 1003, 1276
CviQI GTAC 3 cut(s) 709, 733, 875
DdeI CTNAG 3 cut(s) 133, 646, 1194
EaeI YGGCCR 1 cut(s) 624
Eco105I TACGTA 1 cut(s) 736
Eco130I CCWWGG 1 cut(s) 393
Eco32I GATATC 1 cut(s) 250
Eco47I GGWCC 1 cut(s) 1056
Eco57I CTGAAG 2 cut(s) 1089, 1508
EcoRII CCWGG 2 cut(s) 203, 303
EcoRV GATATC 1 cut(s) 250
EcoT14I CCWWGG 1 cut(s) 393
EcoT22I ATGCAT 3 cut(s) 159, 826, 1191
ErhI CCWWGG 1 cut(s) 393
FaeI CATG 5 cut(s) 161, 239, 789, 1006, 1279
FalI AAGNNNNNCTT 2 cut(s) 1481, 1513
FaqI GGGAC 1 cut(s) 93
FatI CATG 5 cut(s) 157, 235, 785, 1002, 1275
FauI CCCGC 1 cut(s) 186
FbaI TGATCA 1 cut(s) 70
Fnu4HI GCNGC 6 cut(s) 165, 417, 462, 935, 985, 1164
Fsp4HI GCNGC 6 cut(s) 165, 417, 462, 935, 985, 1164
FspBI CTAG 3 cut(s) 941, 1266, 1600
FspI TGCGCA 1 cut(s) 168
GlaI GCGC 1 cut(s) 168
GluI GCNGC 6 cut(s) 165, 417, 462, 935, 985, 1164
GsuI CTGGAG 1 cut(s) 1397
HaeIII GGCC 4 cut(s) 203, 626, 665, 1021
HapII CCGG 1 cut(s) 33
HgaI GACGC 1 cut(s) 800
HhaI GCGC 1 cut(s) 169
Hin1II CATG 5 cut(s) 161, 239, 789, 1006, 1279
Hin6I GCGC 1 cut(s) 167
HinP1I GCGC 1 cut(s) 167
HindIII AAGCTT 1 cut(s) 1180
HinfI GANTC 8 cut(s) 81, 128, 373, 400, 429, 590, 1119, 1310
HpaII CCGG 1 cut(s) 33
HphI GGTGA 7 cut(s) 55, 514, 631, 707, 964, 1305, 1528
Hpy166II GTNNAC 1 cut(s) 733
Hpy188III TCNNGA 6 cut(s) 236, 377, 602, 818, 1226, 1351
Hpy8I GTNNAC 1 cut(s) 733
Hpy99I CGWCG 1 cut(s) 799
HpyAV CCTTC 7 cut(s) 449, 543, 686, 916, 1060, 1119, 1428
HpyCH4III ACNGT 2 cut(s) 964, 1317
HpyCH4IV ACGT 1 cut(s) 735
HpyF10VI GCNNNNNNNGC 7 cut(s) 38, 62, 102, 118, 239, 330, 800
HpyF3I CTNAG 3 cut(s) 133, 646, 1194
HpySE526I ACGT 1 cut(s) 735
Hsp92II CATG 5 cut(s) 161, 239, 789, 1006, 1279
HspAI GCGC 1 cut(s) 167
Ksp22I TGATCA 1 cut(s) 70
LmnI GCTCC 3 cut(s) 38, 1129, 1416
Lsp1109I GCAGC 4 cut(s) 151, 428, 473, 921
MaeI CTAG 3 cut(s) 941, 1266, 1600
MaeII ACGT 1 cut(s) 735
MaeIII GTNAC 5 cut(s) 520, 673, 788, 970, 1592
MbiI CCGCTC 1 cut(s) 41
MfeI CAATTG 1 cut(s) 74
MflI RGATCY 1 cut(s) 913
MhlI GDGCHC 1 cut(s) 12
MlsI TGGCCA 1 cut(s) 626
MluCI AATT 8 cut(s) 74, 573, 668, 745, 847, 1221, 1303, 1365
MluNI TGGCCA 1 cut(s) 626
MlyI GAGTC 3 cut(s) 75, 423, 584
MmeI TCCRAC 5 cut(s) 406, 526, 618, 743, 1411
Mox20I TGGCCA 1 cut(s) 626
Mph1103I ATGCAT 3 cut(s) 159, 826, 1191
MroXI GAANNNNTTC 2 cut(s) 494, 609
MscI TGGCCA 1 cut(s) 626
MseI TTAA 3 cut(s) 1286, 1382, 1476
MslI CAYNNNNRTG 2 cut(s) 440, 531
Msp20I TGGCCA 1 cut(s) 626
MspI CCGG 1 cut(s) 33
MspR9I CCNGG 2 cut(s) 205, 305
MunI CAATTG 1 cut(s) 74
Mva1269I GAATGC 1 cut(s) 1189
MvaI CCWGG 2 cut(s) 205, 305
MvnI CGCG 2 cut(s) 794, 843
MwoI GCNNNNNNNGC 7 cut(s) 38, 62, 102, 118, 239, 330, 800
NlaIII CATG 5 cut(s) 161, 239, 789, 1006, 1279
NlaIV GGNNCC 1 cut(s) 1360
NmeAIII GCCGAG 1 cut(s) 300
NmuCI GTSAC 4 cut(s) 520, 788, 970, 1592
NsbI TGCGCA 1 cut(s) 168
NsiI ATGCAT 3 cut(s) 159, 826, 1191
PagI TCATGA 1 cut(s) 235
PctI GAATGC 1 cut(s) 1189
PdmI GAANNNNTTC 2 cut(s) 494, 609
PfeI GAWTC 5 cut(s) 128, 373, 400, 1119, 1310
PkrI GCNGC 6 cut(s) 166, 418, 463, 936, 986, 1165
PleI GAGTC 3 cut(s) 75, 423, 584
PpsI GAGTC 3 cut(s) 75, 423, 584
Ppu21I YACGTR 1 cut(s) 736
Psp6I CCWGG 2 cut(s) 203, 303
PspGI CCWGG 2 cut(s) 203, 303
PspN4I GGNNCC 1 cut(s) 1360
PspPI GGNCC 3 cut(s) 201, 664, 1056
PsuI RGATCY 1 cut(s) 913
RsaI GTAC 3 cut(s) 710, 734, 876
RsaNI GTAC 3 cut(s) 709, 733, 875
RseI CAYNNNNRTG 2 cut(s) 440, 531
SaqAI TTAA 3 cut(s) 1286, 1382, 1476
SatI GCNGC 6 cut(s) 165, 417, 462, 935, 985, 1164
Sau96I GGNCC 3 cut(s) 201, 664, 1056
ScaI AGTACT 1 cut(s) 710
SchI GAGTC 3 cut(s) 75, 423, 584
ScrFI CCNGG 2 cut(s) 205, 305
SduI GDGCHC 1 cut(s) 12
SinI GGWCC 1 cut(s) 1056
SmiMI CAYNNNNRTG 2 cut(s) 440, 531
SmlI CTYRAG 2 cut(s) 506, 1349
SmoI CTYRAG 2 cut(s) 506, 1349
SnaBI TACGTA 1 cut(s) 736
Sse9I AATT 8 cut(s) 74, 573, 668, 745, 847, 1221, 1303, 1365
SsiI CCGC 6 cut(s) 41, 103, 193, 841, 984, 1163
SspMI CTAG 3 cut(s) 941, 1266, 1600
StyD4I CCNGG 2 cut(s) 203, 303
StyI CCWWGG 1 cut(s) 393
TaaI ACNGT 2 cut(s) 964, 1317
TaiI ACGT 1 cut(s) 738
TaqI TCGA 2 cut(s) 472, 756
TaqII GACCGA 1 cut(s) 602
TasI AATT 8 cut(s) 74, 573, 668, 745, 847, 1221, 1303, 1365
TatI WGTACW 2 cut(s) 708, 874
TauI GCSGC 2 cut(s) 987, 1166
TfiI GAWTC 5 cut(s) 128, 373, 400, 1119, 1310
Tru1I TTAA 3 cut(s) 1286, 1382, 1476
Tru9I TTAA 3 cut(s) 1286, 1382, 1476
TscAI CASTG 2 cut(s) 427, 967
TseFI GTSAC 4 cut(s) 520, 788, 970, 1592
TseI GCWGC 4 cut(s) 164, 416, 461, 934
Tsp45I GTSAC 4 cut(s) 520, 788, 970, 1592
TspDTI ATGAA 6 cut(s) 273, 285, 468, 716, 909, 1062
TspGWI ACGGA 1 cut(s) 425
TspRI CASTG 2 cut(s) 427, 967
VpaK11BI GGWCC 1 cut(s) 1056
XapI RAATTY 2 cut(s) 745, 847
XmnI GAANNNNTTC 2 cut(s) 494, 609
XspI CTAG 3 cut(s) 941, 1266, 1600
ZrmI AGTACT 1 cut(s) 710
Zsp2I ATGCAT 3 cut(s) 159, 826, 1191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.