Rw3G013540

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Forward (+)
13408889 .. 13411039
2151 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G013540.1

Sequence Viewer

Length: 2151 bp
ATGCACGATCTTGTGCATGATGTTGCAGAACGTGTATCAAAATCTTCGCAGGAAAGAGGTCGCTCATTTGTTGGCGATCAATTCTTTCTACCAATTGCAAGCTTTCAGACTTTGCGAGTCTTAGGATTATACGGGTCAAATATTAAGGAGTTGCCAGTTTCAATTGGAAAAATGAAACACTTGAGGTATCTGGATATTTCTGATACAAGGATTACAACACTCCCCAAATCTATTGGCAAGCTTTATAACCTACAGACTTTGAAAATGGAAGGTCTCCACTTGAAAGAGCTTCCAAAGGAACTGCTCAATTTGATCGATTTGAGACATATTTGTCCCATTAGATCAAGCGTATTTCTTTCACAGCAGTTTCCATGGCCAGCTGGGATGGGGCGATTGACTAACCTTCAATCATTACCTTATTTTACGGTGCGTAAGGAGATAGGTTGGGGAATCGAGGAACTGGGCGGCTTGAAACAATTGAAAGGTGGATTAACTATTTATCATCTGGAACATGTGAGAGATAGAGACGCAGCTAAGAAAGCAAATCTAGTGGGGAAGCGTATACGTGATTTGAGCTTTTGTTGGTCGAGTAACGAACACCGGGCAAGCAGCAGCAACATTGATGAGGATGTACTGGAAGCACTTCAACCACACCCTAATTTGGAATTCTTAAAGATTGAAAACTTCATGGGTGATAAATTTCCTTCATGGATGATGAGCAAGTTGTCTCTACCCAGAAATTTGAAAGAGATCGCCTTTGGGGGCTGCAACAAATGTGATGGAGTCCCAAAACTTGGCCATCTGCCTAATCTTAGATCTCTTCTCATGGACAGAATGTCAAACCTGAAATGTCTAGGATCTGACTTTTACGGTTACGATCCCCATGAGGCTACGACAGGTTCTCAGACGAAAGCTCTGTTTCCTGCATTGAAGAGTTTGCATATTAAAAACGCCAAGAAGCTAATCGAATGGAGTGAACCACAAGTATTGTTGCCAACAGAGGCGTTTCCATGTCTTGAGGAGCTTATTCTGTGGGATTGTCCCCAATTAACAAGTGCTCCCAGTTATTTTCCATCTCTTCAGACGCTGAGTATGAGTGGAATAGATAGCGCTGTGCCAGCAACAAGTATTCTTAGCGAACTGACCACTCTCACTTATCTCCGTCTAGTATGGTTGAAGGGAGTTAACTGCCTGCCGGAAGGGACGTTAAGGAACAACAAGAATCTTGCACGTTTGGTGATAATACATTGTTGGGAGTTGACTTGTATTGCTCCCCATGGATTTGGTTGTTGCACTTCTCTTCAGTCACTGGAGATTTCAACCTGTAATAAACTGATGTATTTACCTGAGGGGCTACTTGCACCATCTCTAAAGATGTTGGATATAAGGACCTGCGACAGTCTGGAGTCCATCCCATTTACGGAGGGGATAGAATACAGCAGTCTTGAAACCTTGAGAATCAAGAAATGCAACATAACGTCCATTCCAATTTCACAGGGCTTGCCATCCCTTCGTGTACTGGAGATTTTTCATTGTCCTAAACTGTCGAGCCTCCCCAGTGGACTAAACTGCTGCACCTCTCTTGAGAAGTTGGAGATAATAAACTGCCCCAGTCTGGAGACAATTCCATATTTAGCATCCCTCACCAGCTTGAAGATATTGAATATCGGTGCCTTCTGCGAGCTCGATTCATTCCCTGCTATACCGGTCATGCCACAACTTGAGGAACTAAGGCTGGAAGGGTGGCCTAAGCTCAAGTCTCTGCCTGAACAGATTCAACACTCCACTTCTCTCACGTCTTTGACCATATGCTCCTTCGACCATGTGGAGGAAATTCCAGACTGGTTCGGAAACTTCTCTTCTCTTGACTGCCTCAACATAGAGCGTTGCCAAAATCTAAAGGAACTTCCTTCACTCCTAGCTATGCAACGCCTCACAAAATTAAGATTCCTGTTCATCTATGACTGTCCTATAATTGAAAGATGCAGGACGGGCGGCCCAGAGTGGCCCAAGATTTCTCATATCCCACATGTCCGTTGTAAGATTTCTTCTCTACTTTTCATTTTACTACCATTACTTGTTATATATGTTGTAGCTACTCATTCAAACTTCAATAATCCTACAGAATATTTCCAAATGCAAAACTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

716

Amino Acids

80.72

Weight (kDa)

7.47

Isoelectric Point (pI)

57.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 29 - 319 7.6e-30 Leucine-rich repeat region
LRR_8 PF13855 37 - 91 5.8e-06 Leucine rich repeat
LRR_R13L1-DRL21 PF25019 151 - 279 4.4e-33 R13L1/DRL21 LRRs
LRR_14 PF23598 479 - 557 5e-06 Leucine-rich repeat region
LRR_RPS2 PF23247 484 - 604 3.1e-06 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_R13L1-DRL21 PF25019 590 - 650 1.6e-06 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000029)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13530 FvH4_4g18270 FvH4_6g12200 FvH4_6g12460 FvH4_6g12461 FvH4_6g13450 FvH4_6g15090 FvH4_6g15220 FvH4_6g15230 FvH4_6g15250 FvH4_6g15251 FvH4_6g15340 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47980 FvH4_6g47980 FvH4_6g47980 FvH4_6g48170 FvH4_6g48310 FvH4_6g48310 FvH4_6g48850 FvH4_6g48881 FvH4_7g11830
malus_domestica MD02G1059900.v1.1 MD02G1069600.v1.1 MD02G1069700.v1.1 MD02G1070100.v1.1 MD02G1070200.v1.1 MD02G1070300.v1.1 MD02G1070800.v1.1 MD02G1070900.v1.1 MD02G1071200.v1.1 MD02G1071400.v1.1 MD02G1071900.v1.1 MD02G1075200.v1.1 MD03G1048000.v1.1 MD03G1049100.v1.1 MD03G1049200.v1.1 MD03G1052500.v1.1 MD03G1054100.v1.1 MD03G1054300.v1.1 MD03G1054400.v1.1 MD04G1113400.v1.1 MD04G1211100.v1.1 MD04G1211200.v1.1 MD05G1174900.v1.1 MD05G1175000.v1.1 MD05G1175900.v1.1 MD05G1243400.v1.1 MD07G1031500.v1.1 MD07G1031600.v1.1 MD07G1032500.v1.1 MD11G1046800.v1.1 MD11G1046900.v1.1 MD11G1047000.v1.1 MD11G1050400.v1.1 MD11G1050600.v1.1 MD11G1050800.v1.1 MD11G1051100.v1.1 MD11G1051600.v1.1 MD11G1051700.v1.1 MD11G1054600.v1.1 MD11G1055600.v1.1 MD11G1055700.v1.1 MD11G1055800.v1.1 MD11G1056000.v1.1 MD12G1126600.v1.1 MD12G1126700.v1.1 MD12G1126800.v1.1 MD12G1127300.v1.1 MD12G1127600.v1.1 MD12G1127900.v1.1 MD12G1128100.v1.1 MD12G1128300.v1.1 MD15G1261500.v1.1
prunus_persica Prupe.1G010700_v2.0.a1 Prupe.1G010800_v2.0.a1 Prupe.1G011000_v2.0.a1 Prupe.1G159600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163700_v2.0.a1 Prupe.1G163700_v2.0.a1 Prupe.1G163800_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G235500_v2.0.a1 Prupe.2G067400_v2.0.a1 Prupe.2G067500_v2.0.a1 Prupe.2G111700_v2.0.a1 Prupe.2G111800_v2.0.a1 Prupe.3G012000_v2.0.a1 Prupe.6G243400_v2.0.a1 Prupe.6G243500_v2.0.a1 Prupe.6G243600_v2.0.a1 Prupe.6G243700_v2.0.a1 Prupe.6G243800_v2.0.a1 Prupe.6G243900_v2.0.a1
pyrus_communis pycom02g04860 pycom02g04880 pycom02g04890 pycom02g05510 pycom02g05520 pycom02g05600 pycom02g05930 pycom02g06000 pycom02g06010 pycom03g03800 pycom03g03860 pycom03g03880 pycom03g03890 pycom03g03910 pycom03g03920 pycom03g04200 pycom03g04290 pycom03g04300 pycom03g04310 pycom03g04320 pycom03g09260 pycom04g10150 pycom04g10160 pycom04g10170 pycom05g16180 pycom05g16190 pycom05g16240 pycom05g21980 pycom05g21990 pycom07g02280 pycom11g03800 pycom11g03810 pycom11g04080 pycom11g04140 pycom11g04150 pycom11g04160 pycom11g04570 pycom11g04580 pycom11g04590 pycom11g04610 pycom12g12470 pycom12g12490 pycom13g22050
rosa_chinensis RchiOBHm_Chr1g0317761 RchiOBHm_Chr1g0317821 RchiOBHm_Chr1g0317831 RchiOBHm_Chr1g0317871 RchiOBHm_Chr1g0350501 RchiOBHm_Chr2g0107631 RchiOBHm_Chr3g0452091 RchiOBHm_Chr3g0464001 RchiOBHm_Chr3g0464281 RchiOBHm_Chr3g0466331 RchiOBHm_Chr3g0467341 RchiOBHm_Chr3g0467381 RchiOBHm_Chr3g0467731 RchiOBHm_Chr3g0468291 RchiOBHm_Chr3g0468321 RchiOBHm_Chr3g0468341 RchiOBHm_Chr3g0468391 RchiOBHm_Chr3g0468411 RchiOBHm_Chr3g0468571 RchiOBHm_Chr3g0468591 RchiOBHm_Chr3g0490721 RchiOBHm_Chr3g0490751 RchiOBHm_Chr3g0490761 RchiOBHm_Chr3g0490771 RchiOBHm_Chr3g0490951 RchiOBHm_Chr3g0491001 RchiOBHm_Chr3g0491011 RchiOBHm_Chr4g0412461 RchiOBHm_Chr4g0414161 RchiOBHm_Chr4g0414181 RchiOBHm_Chr4g0414191 RchiOBHm_Chr4g0414281 RchiOBHm_Chr4g0414441 RchiOBHm_Chr4g0414521 RchiOBHm_Chr4g0414531 RchiOBHm_Chr4g0417011 RchiOBHm_Chr4g0417021 RchiOBHm_Chr4g0417041 RchiOBHm_Chr4g0417071 RchiOBHm_Chr4g0417101 RchiOBHm_Chr4g0417531 RchiOBHm_Chr4g0417641 RchiOBHm_Chr4g0417651 RchiOBHm_Chr4g0417701 RchiOBHm_Chr4g0417731 RchiOBHm_Chr4g0417741 RchiOBHm_Chr4g0417781 RchiOBHm_Chr4g0418751 RchiOBHm_Chr4g0418791 RchiOBHm_Chr4g0418861 RchiOBHm_Chr4g0418881 RchiOBHm_Chr4g0418901 RchiOBHm_Chr4g0422451 RchiOBHm_Chr4g0422461 RchiOBHm_Chr4g0422471 RchiOBHm_Chr4g0422541 RchiOBHm_Chr4g0422561 RchiOBHm_Chr4g0422591 RchiOBHm_Chr4g0422651 RchiOBHm_Chr4g0422661 RchiOBHm_Chr5g0003251 RchiOBHm_Chr5g0003261 RchiOBHm_Chr5g0055871 RchiOBHm_Chr7g0204701 RchiOBHm_Chr7g0204741
rosa_laevigata RLG00000007607 RLG00000007932 RLG00000017606 RLG00000024418 RLG00000025629 RLG00000030586
rosa_multiflora Rmu_co7959167.1_g000001 Rmu_co8021330.1_g000001 Rmu_co8132128.1_g000001 Rmu_co8224744.1_g000001 Rmu_co8281865.1_g000001 Rmu_co8298487.1_g000001 Rmu_co8319035.1_g000001 Rmu_co8380035.1_g000001 Rmu_co8385371.1_g000001 Rmu_co8398173.1_g000001 Rmu_co8423363.1_g000001 Rmu_co8438275.1_g000001 Rmu_co8474729.1_g000001 Rmu_sc0000057.1_g000008 Rmu_sc0000350.1_g000023 Rmu_sc0000480.1_g000005 Rmu_sc0000654.1_g000021 Rmu_sc0000654.1_g000029 Rmu_sc0000654.1_g000032 Rmu_sc0000654.1_g000041 Rmu_sc0000654.1_g000045 Rmu_sc0000772.1_g000002 Rmu_sc0000772.1_g000041 Rmu_sc0000808.1_g000040 Rmu_sc0000830.1_g000062 Rmu_sc0000830.1_g000065 Rmu_sc0000830.1_g000072 Rmu_sc0000830.1_g000073 Rmu_sc0000935.1_g000020 Rmu_sc0000935.1_g000024 Rmu_sc0000935.1_g000026 Rmu_sc0000935.1_g000027 Rmu_sc0000935.1_g000031 Rmu_sc0000935.1_g000033 Rmu_sc0000962.1_g000033 Rmu_sc0000962.1_g000036 Rmu_sc0000962.1_g000063 Rmu_sc0000962.1_g000064 Rmu_sc0000962.1_g000065 Rmu_sc0001029.1_g000007 Rmu_sc0001063.1_g000014 Rmu_sc0001149.1_g000010 Rmu_sc0001149.1_g000011 Rmu_sc0001358.1_g000009 Rmu_sc0001448.1_g000003 Rmu_sc0001448.1_g000004 Rmu_sc0001729.1_g000005 Rmu_sc0001729.1_g000007 Rmu_sc0001729.1_g000020 Rmu_sc0001729.1_g000023 Rmu_sc0001793.1_g000015 Rmu_sc0002494.1_g000018 Rmu_sc0002494.1_g000019 Rmu_sc0002604.1_g000022 Rmu_sc0002922.1_g000011 Rmu_sc0003008.1_g000009 Rmu_sc0003221.1_g000061 Rmu_sc0003221.1_g000062 Rmu_sc0003459.1_g000014 Rmu_sc0003480.1_g000015 Rmu_sc0003541.1_g000016 Rmu_sc0003541.1_g000020 Rmu_sc0004035.1_g000001 Rmu_sc0004035.1_g000005 Rmu_sc0004035.1_g000011 Rmu_sc0004142.1_g000004 Rmu_sc0004142.1_g000010 Rmu_sc0004353.1_g000008 Rmu_sc0004616.1_g000009 Rmu_sc0004616.1_g000010 Rmu_sc0005231.1_g000004 Rmu_sc0006380.1_g000025 Rmu_sc0006492.1_g000010 Rmu_sc0006895.1_g000001 Rmu_sc0006895.1_g000002 Rmu_sc0006895.1_g000005 Rmu_sc0007034.1_g000004 Rmu_sc0007104.1_g000006 Rmu_sc0008990.1_g000003 Rmu_sc0008990.1_g000004 Rmu_sc0009106.1_g000003 Rmu_sc0009516.1_g000002 Rmu_sc0009516.1_g000003 Rmu_sc0009516.1_g000004 Rmu_sc0009516.1_g000005 Rmu_sc0009645.1_g000001 Rmu_sc0010274.1_g000001 Rmu_sc0010274.1_g000002 Rmu_sc0010419.1_g000003 Rmu_sc0010917.1_g000017 Rmu_sc0011213.1_g000001 Rmu_sc0011228.1_g000007 Rmu_sc0011538.1_g000011 Rmu_sc0011538.1_g000014 Rmu_sc0011538.1_g000015 Rmu_sc0012211.1_g000006 Rmu_sc0012351.1_g000003 Rmu_sc0012351.1_g000005 Rmu_sc0012915.1_g000002 Rmu_sc0013088.1_g000001 Rmu_sc0013459.1_g000001 Rmu_sc0013765.1_g000004 Rmu_sc0013765.1_g000005 Rmu_sc0014003.1_g000012 Rmu_sc0014003.1_g000014 Rmu_sc0014698.1_g000001 Rmu_sc0015740.1_g000001 Rmu_sc0016429.1_g000003 Rmu_sc0018885.1_g000001 Rmu_sc0020345.1_g000001 Rmu_sc0027791.1_g000001 Rmu_sc0037325.1_g000001 Rmu_ssc0000010.1_g000024 Rmu_ssc0000010.1_g000025 Rmu_ssc0000083.1_g000021 Rmu_ssc0000340.1_g000002 Rmu_ssc0000386.1_g000002 Rmu_ssc0000386.1_g000024 Rmu_ssc0000386.1_g000025 Rmu_ssc0000386.1_g000034 Rmu_ssc0000386.1_g000037 Rmu_ssc0000477.1_g000001
rosa_roxburghii Rroxscaffold_161G00448010 Rroxscaffold_164G00436080 Rroxscaffold_1G00024500 Rroxscaffold_2G00124290 Rroxscaffold_3G00222940 Rroxscaffold_3G00227440 Rroxscaffold_4G00304810 Rroxscaffold_4G00330180 Rroxscaffold_4G00330200 Rroxscaffold_5G00356620 Rroxscaffold_5G00358170 Rroxscaffold_5G00360880 Rroxscaffold_5G00361220 Rroxscaffold_5G00361950 Rroxscaffold_5G00361960 Rroxscaffold_5G00361990 Rroxscaffold_5G00362370 Rroxscaffold_5G00364540 Rroxscaffold_5G00364550 Rroxscaffold_5G00364580 Rroxscaffold_5G00364600 Rroxscaffold_6G00393290 Rroxscaffold_6G00412680 Rroxscaffold_6G00412790 Rroxscaffold_6G00413470 Rroxscaffold_6G00413720 Rroxscaffold_6G00416070 Rroxscaffold_7G00205400
rosa_rugosa Rorug01G0017300 Rorug01G0017400 Rorug01G0018000 Rorug01G0018100 Rorug01G0211500 Rorug02G0638200 Rorug03G0070000 Rorug03G0071200 Rorug03G0081000 Rorug03G0086500 Rorug03G0089300 Rorug03G0095300 Rorug03G0096000 Rorug03G0096000 Rorug04G0055000 Rorug04G0078300 Rorug04G0104100.1 Rorug04G0113800 Rorug04G0126700 Rorug04G0128000 Rorug04G0145900 Rorug04G0148700 Rorug04G0149100 Rorug04G0149100 Rorug04G0149200 Rorug04G0149300 Rorug04G0154900 Rorug04G0180400 Rorug04G0180500 Rorug04G0180700 Rorug04G0180800 Rorug04G0401500 Rorug04G0402100 Rorug05G0288600 Rorug05G0334100 Rorug07G0176400
rosa_samantha Rh1DG043200 Rh1DG043500 Rh1DG043900 Rh1DG222800 Rh3CG039900 Rh3CG156200 Rh3CG328500 Rh3CG328800 Rh3DG165000 Rh4AG208400 Rh4BG205600 Rh4BG213900 Rh4BG243900 Rh4CG198800 Rh4DG168600 Rh4DG180100 Rh4DG180300 Rh4DG180600 Rh4DG181200 Rh4DG181600 Rh4DG181700 Rh4DG183700 Rh4DG184000 Rh4DG184400 Rh4DG184700 Rh4DG206100 Rh4DG206200 Rh4DG206300 Rh4DG215600 Rh4DG238700 Rh4DG238900 Rh5DG390300
rosa_wichuraiana Rw0G005050 Rw0G009260 Rw0G009280 Rw0G015600 Rw0G023570 Rw1G002140 Rw1G002170 Rw1G002210 Rw1G002240 Rw1G019500 Rw2G015490 Rw3G003020 Rw3G010900 Rw3G012030 Rw3G012790 Rw3G013050 Rw3G013540 Rw3G013640 Rw3G013650 Rw3G026050 Rw3G026070 Rw4G015740 Rw4G015790 Rw4G015910 Rw4G015930 Rw4G015950 Rw4G017900 Rw4G017930 Rw4G018440 Rw4G018450 Rw4G018530 Rw4G020720 Rw4G020760 Rw5G019250 Rw5G034370 Rw7G018700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 246
AasI GACNNNNNNGTC 1 cut(s) 330
Acc36I ACCTGC 1 cut(s) 1400
AccB1I GGYRCC 1 cut(s) 1670
AccB7I CCANNNNNTGG 1 cut(s) 794
AccI GTMKAC 1 cut(s) 562
AciI CCGC 2 cut(s) 465, 1995
AclWI GGATC 2 cut(s) 865, 872
AcoI YGGCCR 2 cut(s) 374, 796
AcsI RAATTY 4 cut(s) 665, 698, 739, 1833
AcuI CTGAAG 2 cut(s) 1064, 1286
AfaI GTAC 2 cut(s) 633, 1518
AfeI AGCGCT 1 cut(s) 1111
AfiI CCNNNNNNNGG 5 cut(s) 661, 794, 1420, 1615, 1828
AflIII ACRYGT 3 cut(s) 31, 511, 2029
AgeI ACCGGT 1 cut(s) 1705
AhdI GACNNNNNGTC 1 cut(s) 835
AjiI CACGTC 1 cut(s) 1797
Alw21I GWGCWC 2 cut(s) 1060, 1686
Alw26I GTCTC 6 cut(s) 278, 316, 519, 732, 1613, 1764
AlwI GGATC 2 cut(s) 865, 872
AlwNI CAGNNNCTG 2 cut(s) 1087, 1309
Aor51HI AGCGCT 1 cut(s) 1111
AoxI GGCC 5 cut(s) 374, 796, 1745, 1996, 2006
ApeKI GCWGC 5 cut(s) 530, 609, 612, 765, 1572
ApoI RAATTY 4 cut(s) 665, 698, 739, 1833
AsiGI ACCGGT 1 cut(s) 1705
Asp700I GAANNNNTTC 2 cut(s) 642, 1773
AspLEI GCGC 1 cut(s) 1112
AspS9I GGNCC 3 cut(s) 1389, 1997, 2007
AsuC2I CCSGG 1 cut(s) 602
AsuHPI GGTGA 3 cut(s) 704, 1249, 1636
AvaII GGWCC 1 cut(s) 1389
AxyI CCTNAGG 1 cut(s) 1347
BalI TGGCCA 2 cut(s) 376, 798
BanI GGYRCC 1 cut(s) 1670
BanII GRGCYC 1 cut(s) 1686
BarI GAAGNNNNNNTAC 2 cut(s) 2032, 2064
Bbv12I GWGCWC 2 cut(s) 1060, 1686
BbvI GCAGC 5 cut(s) 542, 621, 624, 752, 1559
BccI CCATC 7 cut(s) 379, 773, 807, 1081, 1372, 1418, 1513
BcnI CCSGG 1 cut(s) 602
BcoDI GTCTC 6 cut(s) 278, 316, 519, 732, 1613, 1764
BfaI CTAG 4 cut(s) 548, 854, 1166, 1919
BfmI CTRYAG 2 cut(s) 251, 2121
BfoI RGCGCY 1 cut(s) 1113
BfuAI ACCTGC 1 cut(s) 1400
BglII AGATCT 1 cut(s) 815
BisI GCNGC 7 cut(s) 466, 531, 610, 613, 766, 1573, 1996
BlsI GCNGC 7 cut(s) 467, 532, 611, 614, 767, 1574, 1997
Bme1390I CCNGG 1 cut(s) 602
Bme18I GGWCC 1 cut(s) 1389
BmeRI GACNNNNNGTC 1 cut(s) 835
BmgBI CACGTC 1 cut(s) 1797
BmgT120I GGNCC 3 cut(s) 1389, 1997, 2007
BmiI GGNNCC 1 cut(s) 1672
BmrFI CCNGG 1 cut(s) 602
BmrI ACTGGG 4 cut(s) 470, 1056, 1551, 1605
BmsI GCATC 2 cut(s) 1646, 1973
BmuI ACTGGG 4 cut(s) 470, 1056, 1551, 1605
BpmI CTGGAG 4 cut(s) 1331, 1424, 1541, 1637
Bpu10I CCTNAGC 1 cut(s) 1749
BpuEI CTTGAG 6 cut(s) 202, 1037, 1474, 1604, 1739, 1742
BpuMI CCSGG 1 cut(s) 602
Bsa29I ATCGAT 1 cut(s) 315
BsaAI YACGTR 1 cut(s) 566
BsaI GGTCTC 1 cut(s) 278
BsaJI CCNNGG 2 cut(s) 371, 1276
BsaWI WCCGGW 1 cut(s) 1705
BsaXI ACNNNNNCTCC 2 cut(s) 1042, 1072
Bsc4I CCNNNNNNNGG 5 cut(s) 661, 794, 1420, 1615, 1828
Bse118I RCCGGY 1 cut(s) 1705
Bse1I ACTGG 9 cut(s) 155, 465, 639, 1062, 1314, 1524, 1557, 1611, 1847
Bse21I CCTNAGG 1 cut(s) 1347
BseCI ATCGAT 1 cut(s) 315
BseDI CCNNGG 2 cut(s) 371, 1276
BseGI GGATG 6 cut(s) 390, 634, 717, 1410, 1505, 1637
BseLI CCNNNNNNNGG 5 cut(s) 661, 794, 1420, 1615, 1828
BseMII CTCAG 3 cut(s) 917, 1079, 1338
BseNI ACTGG 9 cut(s) 155, 465, 639, 1062, 1314, 1524, 1557, 1611, 1847
BseRI GAGGAG 1 cut(s) 1034
BseXI GCAGC 5 cut(s) 542, 621, 624, 752, 1559
BseYI CCCAGC 1 cut(s) 380
BsgI GTGCAG 1 cut(s) 1558
BshFI GGCC 5 cut(s) 376, 798, 1747, 1998, 2008
BshNI GGYRCC 1 cut(s) 1670
BshTI ACCGGT 1 cut(s) 1705
BshVI ATCGAT 1 cut(s) 315
BsiHKAI GWGCWC 2 cut(s) 1060, 1686
BsiSI CCGG 3 cut(s) 601, 1196, 1706
BslFI GGGAC 4 cut(s) 318, 770, 1026, 1216
BslI CCNNNNNNNGG 5 cut(s) 661, 794, 1420, 1615, 1828
BsmAI GTCTC 6 cut(s) 278, 316, 519, 732, 1613, 1764
BsmBI CGTCTC 1 cut(s) 519
BsmFI GGGAC 4 cut(s) 318, 770, 1026, 1216
BsnI GGCC 5 cut(s) 376, 798, 1747, 1998, 2008
Bso31I GGTCTC 1 cut(s) 278
Bsp1286I GDGCHC 2 cut(s) 1060, 1686
Bsp143I GATC 8 cut(s) 7, 76, 312, 341, 750, 815, 857, 877
Bsp19I CCATGG 2 cut(s) 371, 1276
BspACI CCGC 2 cut(s) 465, 1995
BspANI GGCC 5 cut(s) 376, 798, 1747, 1998, 2008
BspCNI CTCAG 3 cut(s) 916, 1080, 1339
BspDI ATCGAT 1 cut(s) 315
BspLI GGNNCC 1 cut(s) 1672
BspMI ACCTGC 1 cut(s) 1400
BspPI GGATC 2 cut(s) 865, 872
BspT107I GGYRCC 1 cut(s) 1670
BspTNI GGTCTC 1 cut(s) 278
BsrFI RCCGGY 1 cut(s) 1705
BsrI ACTGG 9 cut(s) 155, 465, 639, 1062, 1314, 1524, 1557, 1611, 1847
BssAI RCCGGY 1 cut(s) 1705
BssECI CCNNGG 2 cut(s) 371, 1276
BssMI GATC 8 cut(s) 7, 76, 312, 341, 750, 815, 857, 877
BssNAI GTATAC 1 cut(s) 563
BssT1I CCWWGG 2 cut(s) 371, 1276
Bst1107I GTATAC 1 cut(s) 563
Bst4CI ACNGT 6 cut(s) 427, 872, 1400, 1545, 1967, 2147
Bst6I CTCTTC 5 cut(s) 825, 926, 1083, 1305, 1864
BstBAI YACGTR 1 cut(s) 566
BstC8I GCNNGC 8 cut(s) 100, 239, 378, 607, 1119, 1193, 1502, 1682
BstDEI CTNAG 9 cut(s) 121, 534, 812, 903, 1088, 1133, 1347, 1730, 1749
BstDSI CCRYGG 2 cut(s) 371, 1276
BstF5I GGATG 6 cut(s) 390, 634, 717, 1410, 1505, 1637
BstH2I RGCGCY 1 cut(s) 1113
BstHHI GCGC 1 cut(s) 1112
BstKTI GATC 8 cut(s) 10, 79, 315, 344, 753, 818, 860, 880
BstMAI GTCTC 6 cut(s) 278, 316, 519, 732, 1613, 1764
BstMBI GATC 8 cut(s) 7, 76, 312, 341, 750, 815, 857, 877
BstMWI GCNNNNNNNGC 3 cut(s) 539, 1118, 1992
BstNSI RCATGY 2 cut(s) 515, 2033
BstSCI CCNGG 1 cut(s) 600
BstSFI CTRYAG 2 cut(s) 251, 2121
BstV1I GCAGC 5 cut(s) 542, 621, 624, 752, 1559
BstX2I RGATCY 2 cut(s) 815, 857
BstXI CCANNNNNNTGG 1 cut(s) 1283
BstYI RGATCY 2 cut(s) 815, 857
BstZ17I GTATAC 1 cut(s) 563
Bsu15I ATCGAT 1 cut(s) 315
Bsu36I CCTNAGG 1 cut(s) 1347
BsuRI GGCC 5 cut(s) 376, 798, 1747, 1998, 2008
BsuTUI ATCGAT 1 cut(s) 315
BtgI CCRYGG 2 cut(s) 371, 1276
BtrI CACGTC 1 cut(s) 1797
BtsCI GGATG 6 cut(s) 390, 634, 717, 1410, 1505, 1637
BtsIMutI CAGTG 2 cut(s) 1307, 1564
BveI ACCTGC 1 cut(s) 1400
Cac8I GCNNGC 8 cut(s) 100, 239, 378, 607, 1119, 1193, 1502, 1682
CaiI CAGNNNCTG 2 cut(s) 1087, 1309
CfoI GCGC 1 cut(s) 1112
Cfr10I RCCGGY 1 cut(s) 1705
Cfr13I GGNCC 3 cut(s) 1389, 1997, 2007
ClaI ATCGAT 1 cut(s) 315
CseI GACGC 2 cut(s) 536, 1093
Csp6I GTAC 2 cut(s) 632, 1517
CspAI ACCGGT 1 cut(s) 1705
CspCI CAANNNNNGTGG 4 cut(s) 531, 566, 969, 1004
CviQI GTAC 2 cut(s) 632, 1517
DdeI CTNAG 9 cut(s) 121, 534, 812, 903, 1088, 1133, 1347, 1730, 1749
DpnI GATC 8 cut(s) 9, 78, 314, 343, 752, 817, 859, 879
DpnII GATC 8 cut(s) 7, 76, 312, 341, 750, 815, 857, 877
DrdI GACNNNNNNGTC 1 cut(s) 330
DriI GACNNNNNGTC 1 cut(s) 835
DseDI GACNNNNNNGTC 1 cut(s) 330
EaeI YGGCCR 2 cut(s) 374, 796
Eam1104I CTCTTC 5 cut(s) 825, 926, 1083, 1305, 1864
Eam1105I GACNNNNNGTC 1 cut(s) 835
EarI CTCTTC 5 cut(s) 825, 926, 1083, 1305, 1864
Ecl136II GAGCTC 1 cut(s) 1684
Eco130I CCWWGG 2 cut(s) 371, 1276
Eco24I GRGCYC 1 cut(s) 1686
Eco31I GGTCTC 1 cut(s) 278
Eco47I GGWCC 1 cut(s) 1389
Eco47III AGCGCT 1 cut(s) 1111
Eco53kI GAGCTC 1 cut(s) 1684
Eco57I CTGAAG 2 cut(s) 1064, 1286
Eco81I CCTNAGG 1 cut(s) 1347
EcoICRI GAGCTC 1 cut(s) 1684
EcoO109I RGGNCCY 1 cut(s) 1389
EcoRI GAATTC 1 cut(s) 665
EcoT14I CCWWGG 2 cut(s) 371, 1276
EcoT38I GRGCYC 1 cut(s) 1686
ErhI CCWWGG 2 cut(s) 371, 1276
Esp3I CGTCTC 1 cut(s) 519
FaqI GGGAC 4 cut(s) 318, 770, 1026, 1216
FauNDI CATATG 1 cut(s) 1808
FblI GTMKAC 1 cut(s) 562
Fnu4HI GCNGC 7 cut(s) 466, 531, 610, 613, 766, 1573, 1996
FokI GGATG 6 cut(s) 397, 641, 724, 1397, 1492, 1624
FriOI GRGCYC 1 cut(s) 1686
Fsp4HI GCNGC 7 cut(s) 466, 531, 610, 613, 766, 1573, 1996
FspBI CTAG 4 cut(s) 548, 854, 1166, 1919
GlaI GCGC 1 cut(s) 1111
GluI GCNGC 7 cut(s) 466, 531, 610, 613, 766, 1573, 1996
GsaI CCCAGC 1 cut(s) 384
GsuI CTGGAG 4 cut(s) 1331, 1424, 1541, 1637
HaeII RGCGCY 1 cut(s) 1113
HaeIII GGCC 5 cut(s) 376, 798, 1747, 1998, 2008
HapII CCGG 3 cut(s) 601, 1196, 1706
HgaI GACGC 2 cut(s) 536, 1093
HhaI GCGC 1 cut(s) 1112
Hin6I GCGC 1 cut(s) 1110
HinP1I GCGC 1 cut(s) 1110
HincII GTYRAC 2 cut(s) 1186, 1260
HindII GTYRAC 2 cut(s) 1186, 1260
HindIII AAGCTT 2 cut(s) 100, 239
HinfI GANTC 9 cut(s) 117, 450, 783, 1222, 1406, 1458, 1688, 1774, 1947
HpaI GTTAAC 1 cut(s) 1186
HpaII CCGG 3 cut(s) 601, 1196, 1706
HphI GGTGA 3 cut(s) 704, 1249, 1636
Hpy166II GTNNAC 6 cut(s) 563, 977, 1186, 1260, 1517, 1562
Hpy188I TCNGA 6 cut(s) 108, 202, 862, 906, 1083, 1850
Hpy8I GTNNAC 6 cut(s) 563, 977, 1186, 1260, 1517, 1562
HpyCH4III ACNGT 6 cut(s) 427, 872, 1400, 1545, 1967, 2147
HpyCH4IV ACGT 6 cut(s) 31, 565, 1205, 1231, 1478, 1796
HpyF10VI GCNNNNNNNGC 3 cut(s) 539, 1118, 1992
HpyF3I CTNAG 9 cut(s) 121, 534, 812, 903, 1088, 1133, 1347, 1730, 1749
HpySE526I ACGT 6 cut(s) 31, 565, 1205, 1231, 1478, 1796
HspAI GCGC 1 cut(s) 1110
KspAI GTTAAC 1 cut(s) 1186
Kzo9I GATC 8 cut(s) 7, 76, 312, 341, 750, 815, 857, 877
LmnI GCTCC 4 cut(s) 1021, 1063, 1276, 1817
Lsp1109I GCAGC 5 cut(s) 542, 621, 624, 752, 1559
LweI GCATC 2 cut(s) 1646, 1973
MaeI CTAG 4 cut(s) 548, 854, 1166, 1919
MaeII ACGT 6 cut(s) 31, 565, 1205, 1231, 1478, 1796
MaeIII GTNAC 3 cut(s) 590, 872, 1305
MalI GATC 8 cut(s) 9, 78, 314, 343, 752, 817, 859, 879
MboI GATC 8 cut(s) 7, 76, 312, 341, 750, 815, 857, 877
MboII GAAGA 8 cut(s) 36, 812, 943, 1070, 1292, 1666, 1851, 2040
MfeI CAATTG 3 cut(s) 93, 162, 476
MflI RGATCY 2 cut(s) 815, 857
MhlI GDGCHC 2 cut(s) 1060, 1686
MlsI TGGCCA 2 cut(s) 376, 798
MluNI TGGCCA 2 cut(s) 376, 798
MlyI GAGTC 3 cut(s) 126, 792, 1415
MmeI TCCRAC 2 cut(s) 1359, 1572
Mox20I TGGCCA 2 cut(s) 376, 798
MroXI GAANNNNTTC 2 cut(s) 642, 1773
MscI TGGCCA 2 cut(s) 376, 798
MseI TTAA 9 cut(s) 144, 491, 671, 945, 1049, 1185, 1208, 1943, 2149
Msp20I TGGCCA 2 cut(s) 376, 798
MspA1I CMGCKG 1 cut(s) 380
MspI CCGG 3 cut(s) 601, 1196, 1706
MspR9I CCNGG 1 cut(s) 602
MunI CAATTG 3 cut(s) 93, 162, 476
MwoI GCNNNNNNNGC 3 cut(s) 539, 1118, 1992
NciI CCSGG 1 cut(s) 602
NcoI CCATGG 2 cut(s) 371, 1276
NdeI CATATG 1 cut(s) 1808
NdeII GATC 8 cut(s) 7, 76, 312, 341, 750, 815, 857, 877
NlaIV GGNNCC 1 cut(s) 1672
NmuCI GTSAC 1 cut(s) 1305
NspI RCATGY 2 cut(s) 515, 2033
PciI ACATGT 2 cut(s) 511, 2029
PdmI GAANNNNTTC 2 cut(s) 642, 1773
PfeI GAWTC 6 cut(s) 450, 1222, 1458, 1688, 1774, 1947
PflMI CCANNNNNTGG 1 cut(s) 794
PinAI ACCGGT 1 cut(s) 1705
PkrI GCNGC 7 cut(s) 467, 532, 611, 614, 767, 1574, 1997
PleI GAGTC 3 cut(s) 125, 791, 1414
PpsI GAGTC 3 cut(s) 125, 791, 1414
Ppu21I YACGTR 1 cut(s) 566
PpuMI RGGWCCY 1 cut(s) 1389
PscI ACATGT 2 cut(s) 511, 2029
PsiI TTATAA 1 cut(s) 246
Psp124BI GAGCTC 1 cut(s) 1686
Psp5II RGGWCCY 1 cut(s) 1389
PspFI CCCAGC 1 cut(s) 380
PspN4I GGNNCC 1 cut(s) 1672
PspPI GGNCC 3 cut(s) 1389, 1997, 2007
PspPPI RGGWCCY 1 cut(s) 1389
PstNI CAGNNNCTG 2 cut(s) 1087, 1309
PsuI RGATCY 2 cut(s) 815, 857
PvuII CAGCTG 1 cut(s) 380
RsaI GTAC 2 cut(s) 633, 1518
RsaNI GTAC 2 cut(s) 632, 1517
SacI GAGCTC 1 cut(s) 1686
SaqAI TTAA 9 cut(s) 144, 491, 671, 945, 1049, 1185, 1208, 1943, 2149
SatI GCNGC 7 cut(s) 466, 531, 610, 613, 766, 1573, 1996
Sau3AI GATC 8 cut(s) 7, 76, 312, 341, 750, 815, 857, 877
Sau96I GGNCC 3 cut(s) 1389, 1997, 2007
SchI GAGTC 3 cut(s) 126, 792, 1415
ScrFI CCNGG 1 cut(s) 602
SduI GDGCHC 2 cut(s) 1060, 1686
SfaNI GCATC 2 cut(s) 1646, 1973
SfcI CTRYAG 2 cut(s) 251, 2121
SinI GGWCC 1 cut(s) 1389
SmlI CTYRAG 6 cut(s) 181, 1016, 1453, 1583, 1721, 1754
SmoI CTYRAG 6 cut(s) 181, 1016, 1453, 1583, 1721, 1754
SsiI CCGC 2 cut(s) 465, 1995
SspI AATATT 2 cut(s) 142, 2129
SspMI CTAG 4 cut(s) 548, 854, 1166, 1919
SstI GAGCTC 1 cut(s) 1686
StyD4I CCNGG 1 cut(s) 600
StyI CCWWGG 2 cut(s) 371, 1276
TaaI ACNGT 6 cut(s) 427, 872, 1400, 1545, 1967, 2147
TaiI ACGT 6 cut(s) 34, 568, 1208, 1234, 1481, 1799
TaqI TCGA 7 cut(s) 315, 453, 587, 966, 1547, 1686, 1818
TatI WGTACW 2 cut(s) 631, 1516
TauI GCSGC 2 cut(s) 468, 1998
TfiI GAWTC 6 cut(s) 450, 1222, 1458, 1688, 1774, 1947
Tru1I TTAA 9 cut(s) 144, 491, 671, 945, 1049, 1185, 1208, 1943, 2149
Tru9I TTAA 9 cut(s) 144, 491, 671, 945, 1049, 1185, 1208, 1943, 2149
TscAI CASTG 2 cut(s) 1314, 1564
TseFI GTSAC 1 cut(s) 1305
TseI GCWGC 5 cut(s) 530, 609, 612, 765, 1572
Tsp45I GTSAC 1 cut(s) 1305
TspDTI ATGAA 7 cut(s) 188, 676, 696, 1520, 1680, 1945, 2050
TspGWI ACGGA 3 cut(s) 1151, 1436, 2024
TspRI CASTG 2 cut(s) 1314, 1564
Van91I CCANNNNNTGG 1 cut(s) 794
VpaK11BI GGWCC 1 cut(s) 1389
XapI RAATTY 4 cut(s) 665, 698, 739, 1833
XceI RCATGY 2 cut(s) 515, 2033
XmiI GTMKAC 1 cut(s) 562
XmnI GAANNNNTTC 2 cut(s) 642, 1773
XspI CTAG 4 cut(s) 548, 854, 1166, 1919
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.