Rroxscaffold_4G00330200

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000029
Physical Location & Seq
Forward (+)
63684646 .. 63700061
15416 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00330200.1

Sequence Viewer

Length: 4026 bp
ATGGCTGAATTTCTCACTTTTGGTGCTCAAGAATTGCTGACGAAAGTGGCTTCACGGGCCGCTGAAGAGTTCCATCTTGTATGGGGATTCAATGGAGAAATTGCAAAGCTGCGTGAGTCGGTCCTCATGCTTGAAGCTGTGCTACGAGATGCCGAACATCCGCGACAAGACCAGGGAGAGGCTGTGAAGCTCTGGGTGAAGAAGCTTGGAGACATAGCTCAGCATGCCGATGATGTGCTGGATGATTATGGATATGAGCTTCTTCGGCGTCAGGTGCAATTGCGAAACAAGGTGCAAGATTTTTTTCCCCTCTCCAATCCCATTCTTTTTCGTATTAAAATGGCACATAAAATTAAAAAAATCAACACATCTTTGGAGGATTTGGGTAAAAAGGCAACTGCTATCGGCTTATTTGCTAGACTATCCTTAGATGCAACCACTTCCCATGATATAAGCATTGACAGGGAAACCTACTCTATCTTAAAACAAGATGAAAACAATATCATTGGAAGGGACGATGTTGTGGCAGATATAGTTCAAGCCCTGACCAAATCAGACCACAATCTGGAAAGTGATCTCTCGGTTCTGGCCATTGTGGGTATGGGAGGGCTTGGAAAGACAACTTTGGCTAAATCAATATATCATGAATCTGAGATAAGCAAGCACTTTGAGAAAAAGATGTGGATATGTGTATCTACCCTTTTTGAAGTTAATTCAATTCTGAGAGGGATCTTGGAATATCTTAAACCAGAAAATGCTGCGGTGAAAGGTATAGATGCAATGTGTAACATTCTTCAAGAAGAGTTGAAAGGAAAGAGATACCTTCTTATACTTGATGATGTATGGAATGAAGATGCTGAAAAATGGAATGATTTGAAGAGTTGTTTGGTAAGAATTACTGATGTCCACGGAAGCAGCATTGTTGTCACTACTCGCAGTGACAAAGTTGCAAAAACGGTGGAAACCCTTCCTAGGTGTGATTTGAGAAAACTATCAGATGACGAGTGTTGGCTTATATTGAAGAATAGAGCAGTTCCTGTTGGAAGTGTTCCTATACTTGAAGATCAAGAGACAATTGGAAGGGAGATTGCCAAAAAGTGTGGAGGTGTACCATTAGTGGCAAAGGTATTAGGAGACATCATGCGCTCTAAAACGAGTAATGAATGGAGTTCAATTATGGAAAGTGAAATATGGGACTTGCCAGATGAAAAAGACAGAATCATGTCGATTTTAAAGTTGAGTTTTGATGAATTGAAACCTTCATCATTGAAACAGTGTTTTGCATACTGCTCAATGTTCATCAAAGACTTTGAAATGGAAAAGGATGACTTAATCCAACTTTGGATGGCTCAAGGATGGCTTCACCCCACAAGAAGTAATATGGAGATGGAGGATAGAGGGAACGAATATTTCAACATTTTATCAGAAAAATCCCTTTTTGAAGACGTTACAACGTATTATGATGGTAGGACAACATGCAAGATGCACGATCTTGTGCATGACCTTGCAGAACGAGTGTCAAACATGACAAACCGCCGCTCACTGTTTTCGAAGGGAGAAGCACTTGGGAACACCTTGCCTAGCTTTAGATCTTTACGTGTGTTAAATTTATACAAGGCAGACATTGACAAGTTGCCGAGTTCAATTGGAAAGTTGACACACTTGAGGTATCTGAATGTTATGAAAACAAATGTGAAAGCATTTCCAAAATCTATTGGTCAACTTTATTACCTTCAAACGTTTAAAATGCCCTATCATGTTGAAGAGTTCCCAAAGATGATAGCTAATATGATCAACTTGAGACATGTTTATTTTGGTCAACATGCGATAGTTCCTGTTGGCATATTGGGAAGATTGACGAATCTCAGATCATTACCCTTTCTGAAGGTGGGTAAGGAAACTGGGCCTAGGATTGAGGAACTGGGTGGATTAAATCATTTGAGAGGCACCTTATCCATCTATAATCTGGAGCATGTAAGAGATGGAGAAGAAGCAGTGAATGCAAAGTTAGTTGATAAGAAACATATACGCAAGTTAACTCTCGACTGGAAGCTTAGTAGACCAAGCAACAATGTTGACAATGAGGATGATGTACTTGAAGGTCTGCAACCACATTGTAATTTGGAAATTTTGAAGATTAAGGGGTTTATGGGTGTTAAGTTTCCATCATGGTTATTGCTTGCCTGCAACTTGAAAGAAATTGTATTAGCAGGGTGCAACAAATGCGAAGGAGTTCCAATACTGGGCCATCTGCCAAATCTCATACATGTTAAGATGAGGAACATGCCGAACCTAAGGTGCTTGGGGTCTGAGTTTTATGGTTACGATCAGATTTCCGGTGCAACAACAAGTGACGAGAGAAAGACTTTGTTTCCTGCTTTGAGATCATTACATATTGAGAATGCCGAGAATCTAATAGAATGGATGGAAGCAGGGGAATTGATGCTGACGGCAGAAAAATTAAGGGTGTTTCCTTACCTTGAGGAGCTGACCTTGGAGCAGTGTAAGCAATTGAGAAGTGCTCCCAGTCATTTTCCATCTCTCATGAAGTTGTCGATACGAGGAGTGGAAAGTGGTATGCCTATAGCAAGTATTTTAAGCGATAAACTGACTACGCTCACTCATCTCGAAATACTTCGTGTCGAGGGACTTGCTAGTCTTCCGGAAGGGACGTTAAGAAACAACAAGAATCTTGAAGCTCTGCATATAGAAGACTGTCCGGAGTTAAGTTGCATTGCTCCCCATGGATTTAACTGCTGCGCATCTCTTCAGAAACTGAGTATTTGGAAGTGTCCTAAGTTGAGGTATTTATCTGATGGGCCACTCCCACTCTCTCTCAAGGAGTTGGACATACAAGATTGCTCCAGTCTAGAGTCCATTCCAATCATCCCTGAGCAAGGCGGTCTCCCATCTCTGCGCAAATTGTCTATATCCAAGTGTTCTCAGTTATCCAGTTTACCTGATGGGCTACAATACTGCACATCTCTTCAAGAATTGCTTATATCGAGCTGCCCAAAGATAACGTCCATTCCAGCCCAATACTGCACTTCTCTTCAAGAATTGCAGATATGGAGCTGCCCAGAGATAACGTCCATTCCAGCCCAATACTGCACATCTCTTCAACAACTGCACATAGGGAGCTGCCCAAAGATAACATCCATTCCAATTCCATCTGCGGGCCTCCCGTCCCTTGGTCAACTGTTGCTTATGCAGTGTCCTGAATTATCAAGCCTACCGAGTGGACTAGGGTGCTGCACCTCTCTTGTTGGTCTGGCAATGATAGAGTGCCCTAAGGTAACATCCATTCCAATTGGCAGTCTCAGTACAACCCTTCGAGACTTGTGTGTAGATAATCCACAGTCTCTTCCAATTTTACACGGCGGCTTCACATCCCTCCGTCAATTGGTAATTAGGGGATTTCAAAGTACACAAATTGATCTGCAATTTTGTCAAATCCTCGTCTCTCTTGAGGATTTGACAATAAGTGATTGTCCTAATCTAGAGACTGTTCCAAGTTTAGACAAGCTCACATCCCTCCTTGAGTTGAGGATTTCTGCTTGTTCCAGATTGACATGTCTACCCAGTGGGTTAGCAATGGCATCCCCGCATGTATTCACCCGTCTCAAGGGATTGGAAATTGGTCGGTTTTGGAATGAGCTGGATTCATTCCCGGCTCTTCAGGTTCTACCACAACTTGAAAGATTGAGGATCTACGGCTGGCCGAAGCTCAAGTCTCTGCCTGAACAAATTCAACACTTGACGTCTTTGACCTCTTTGTCGATATATGACTTTGAGGGAGTGGAGGCTATTCCAGAATGGTTGGGAAACCTTGCATCTCTTCACTCCTTAACTATTGAGGATTGCAAGAATCTGATGTATCTACCTTCCGTCCAAGCTATGCAACGCCTCACCAAATTAGATTGGCTACATATCTACAATTGTCCCCTTTTGAGCGAAAGATGCACCGCGGAGAGCGGCCCAGAGTGGCCTAAGATTTCTCATATTCCAGTTATCTCTGTTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 ko04014 map03460 map04014
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

1341

Amino Acids

150.56

Weight (kDa)

6.03

Isoelectric Point (pI)

51.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 11 - 97 1.4e-19 Rx N-terminal domain
NB-ARC PF00931 175 - 345 1.2e-34 NB-ARC domain
WHD_DRP PF23559 432 - 503 1e-22 Disease resistance protein Winged helix domain
LRR_14 PF23598 516 - 854 9.7e-31 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 638 - 762 3.8e-36 R13L1/DRL21 LRRs
LRR_R13L1-DRL21 PF25019 1131 - 1187 5.2e-06 R13L1/DRL21 LRRs
LRR_14 PF23598 1229 - 1313 6.2e-06 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 1248 - 1307 2.6e-07 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000029)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13530 FvH4_4g18270 FvH4_6g12200 FvH4_6g12460 FvH4_6g12461 FvH4_6g13450 FvH4_6g15090 FvH4_6g15220 FvH4_6g15230 FvH4_6g15250 FvH4_6g15251 FvH4_6g15340 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47980 FvH4_6g47980 FvH4_6g47980 FvH4_6g48170 FvH4_6g48310 FvH4_6g48310 FvH4_6g48850 FvH4_6g48881 FvH4_7g11830
malus_domestica MD02G1059900.v1.1 MD02G1069600.v1.1 MD02G1069700.v1.1 MD02G1070100.v1.1 MD02G1070200.v1.1 MD02G1070300.v1.1 MD02G1070800.v1.1 MD02G1070900.v1.1 MD02G1071200.v1.1 MD02G1071400.v1.1 MD02G1071900.v1.1 MD02G1075200.v1.1 MD03G1048000.v1.1 MD03G1049100.v1.1 MD03G1049200.v1.1 MD03G1052500.v1.1 MD03G1054100.v1.1 MD03G1054300.v1.1 MD03G1054400.v1.1 MD04G1113400.v1.1 MD04G1211100.v1.1 MD04G1211200.v1.1 MD05G1174900.v1.1 MD05G1175000.v1.1 MD05G1175900.v1.1 MD05G1243400.v1.1 MD07G1031500.v1.1 MD07G1031600.v1.1 MD07G1032500.v1.1 MD11G1046800.v1.1 MD11G1046900.v1.1 MD11G1047000.v1.1 MD11G1050400.v1.1 MD11G1050600.v1.1 MD11G1050800.v1.1 MD11G1051100.v1.1 MD11G1051600.v1.1 MD11G1051700.v1.1 MD11G1054600.v1.1 MD11G1055600.v1.1 MD11G1055700.v1.1 MD11G1055800.v1.1 MD11G1056000.v1.1 MD12G1126600.v1.1 MD12G1126700.v1.1 MD12G1126800.v1.1 MD12G1127300.v1.1 MD12G1127600.v1.1 MD12G1127900.v1.1 MD12G1128100.v1.1 MD12G1128300.v1.1 MD15G1261500.v1.1
prunus_persica Prupe.1G010700_v2.0.a1 Prupe.1G010800_v2.0.a1 Prupe.1G011000_v2.0.a1 Prupe.1G159600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163700_v2.0.a1 Prupe.1G163700_v2.0.a1 Prupe.1G163800_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G235500_v2.0.a1 Prupe.2G067400_v2.0.a1 Prupe.2G067500_v2.0.a1 Prupe.2G111700_v2.0.a1 Prupe.2G111800_v2.0.a1 Prupe.3G012000_v2.0.a1 Prupe.6G243400_v2.0.a1 Prupe.6G243500_v2.0.a1 Prupe.6G243600_v2.0.a1 Prupe.6G243700_v2.0.a1 Prupe.6G243800_v2.0.a1 Prupe.6G243900_v2.0.a1
pyrus_communis pycom02g04860 pycom02g04880 pycom02g04890 pycom02g05510 pycom02g05520 pycom02g05600 pycom02g05930 pycom02g06000 pycom02g06010 pycom03g03800 pycom03g03860 pycom03g03880 pycom03g03890 pycom03g03910 pycom03g03920 pycom03g04200 pycom03g04290 pycom03g04300 pycom03g04310 pycom03g04320 pycom03g09260 pycom04g10150 pycom04g10160 pycom04g10170 pycom05g16180 pycom05g16190 pycom05g16240 pycom05g21980 pycom05g21990 pycom07g02280 pycom11g03800 pycom11g03810 pycom11g04080 pycom11g04140 pycom11g04150 pycom11g04160 pycom11g04570 pycom11g04580 pycom11g04590 pycom11g04610 pycom12g12470 pycom12g12490 pycom13g22050
rosa_chinensis RchiOBHm_Chr1g0317761 RchiOBHm_Chr1g0317821 RchiOBHm_Chr1g0317831 RchiOBHm_Chr1g0317871 RchiOBHm_Chr1g0350501 RchiOBHm_Chr2g0107631 RchiOBHm_Chr3g0452091 RchiOBHm_Chr3g0464001 RchiOBHm_Chr3g0464281 RchiOBHm_Chr3g0466331 RchiOBHm_Chr3g0467341 RchiOBHm_Chr3g0467381 RchiOBHm_Chr3g0467731 RchiOBHm_Chr3g0468291 RchiOBHm_Chr3g0468321 RchiOBHm_Chr3g0468341 RchiOBHm_Chr3g0468391 RchiOBHm_Chr3g0468411 RchiOBHm_Chr3g0468571 RchiOBHm_Chr3g0468591 RchiOBHm_Chr3g0490721 RchiOBHm_Chr3g0490751 RchiOBHm_Chr3g0490761 RchiOBHm_Chr3g0490771 RchiOBHm_Chr3g0490951 RchiOBHm_Chr3g0491001 RchiOBHm_Chr3g0491011 RchiOBHm_Chr4g0412461 RchiOBHm_Chr4g0414161 RchiOBHm_Chr4g0414181 RchiOBHm_Chr4g0414191 RchiOBHm_Chr4g0414281 RchiOBHm_Chr4g0414441 RchiOBHm_Chr4g0414521 RchiOBHm_Chr4g0414531 RchiOBHm_Chr4g0417011 RchiOBHm_Chr4g0417021 RchiOBHm_Chr4g0417041 RchiOBHm_Chr4g0417071 RchiOBHm_Chr4g0417101 RchiOBHm_Chr4g0417531 RchiOBHm_Chr4g0417641 RchiOBHm_Chr4g0417651 RchiOBHm_Chr4g0417701 RchiOBHm_Chr4g0417731 RchiOBHm_Chr4g0417741 RchiOBHm_Chr4g0417781 RchiOBHm_Chr4g0418751 RchiOBHm_Chr4g0418791 RchiOBHm_Chr4g0418861 RchiOBHm_Chr4g0418881 RchiOBHm_Chr4g0418901 RchiOBHm_Chr4g0422451 RchiOBHm_Chr4g0422461 RchiOBHm_Chr4g0422471 RchiOBHm_Chr4g0422541 RchiOBHm_Chr4g0422561 RchiOBHm_Chr4g0422591 RchiOBHm_Chr4g0422651 RchiOBHm_Chr4g0422661 RchiOBHm_Chr5g0003251 RchiOBHm_Chr5g0003261 RchiOBHm_Chr5g0055871 RchiOBHm_Chr7g0204701 RchiOBHm_Chr7g0204741
rosa_laevigata RLG00000007607 RLG00000007932 RLG00000017606 RLG00000024418 RLG00000025629 RLG00000030586
rosa_multiflora Rmu_co7959167.1_g000001 Rmu_co8021330.1_g000001 Rmu_co8132128.1_g000001 Rmu_co8224744.1_g000001 Rmu_co8281865.1_g000001 Rmu_co8298487.1_g000001 Rmu_co8319035.1_g000001 Rmu_co8380035.1_g000001 Rmu_co8385371.1_g000001 Rmu_co8398173.1_g000001 Rmu_co8423363.1_g000001 Rmu_co8438275.1_g000001 Rmu_co8474729.1_g000001 Rmu_sc0000057.1_g000008 Rmu_sc0000350.1_g000023 Rmu_sc0000480.1_g000005 Rmu_sc0000654.1_g000021 Rmu_sc0000654.1_g000029 Rmu_sc0000654.1_g000032 Rmu_sc0000654.1_g000041 Rmu_sc0000654.1_g000045 Rmu_sc0000772.1_g000002 Rmu_sc0000772.1_g000041 Rmu_sc0000808.1_g000040 Rmu_sc0000830.1_g000062 Rmu_sc0000830.1_g000065 Rmu_sc0000830.1_g000072 Rmu_sc0000830.1_g000073 Rmu_sc0000935.1_g000020 Rmu_sc0000935.1_g000024 Rmu_sc0000935.1_g000026 Rmu_sc0000935.1_g000027 Rmu_sc0000935.1_g000031 Rmu_sc0000935.1_g000033 Rmu_sc0000962.1_g000033 Rmu_sc0000962.1_g000036 Rmu_sc0000962.1_g000063 Rmu_sc0000962.1_g000064 Rmu_sc0000962.1_g000065 Rmu_sc0001029.1_g000007 Rmu_sc0001063.1_g000014 Rmu_sc0001149.1_g000010 Rmu_sc0001149.1_g000011 Rmu_sc0001358.1_g000009 Rmu_sc0001448.1_g000003 Rmu_sc0001448.1_g000004 Rmu_sc0001729.1_g000005 Rmu_sc0001729.1_g000007 Rmu_sc0001729.1_g000020 Rmu_sc0001729.1_g000023 Rmu_sc0001793.1_g000015 Rmu_sc0002494.1_g000018 Rmu_sc0002494.1_g000019 Rmu_sc0002604.1_g000022 Rmu_sc0002922.1_g000011 Rmu_sc0003008.1_g000009 Rmu_sc0003221.1_g000061 Rmu_sc0003221.1_g000062 Rmu_sc0003459.1_g000014 Rmu_sc0003480.1_g000015 Rmu_sc0003541.1_g000016 Rmu_sc0003541.1_g000020 Rmu_sc0004035.1_g000001 Rmu_sc0004035.1_g000005 Rmu_sc0004035.1_g000011 Rmu_sc0004142.1_g000004 Rmu_sc0004142.1_g000010 Rmu_sc0004353.1_g000008 Rmu_sc0004616.1_g000009 Rmu_sc0004616.1_g000010 Rmu_sc0005231.1_g000004 Rmu_sc0006380.1_g000025 Rmu_sc0006492.1_g000010 Rmu_sc0006895.1_g000001 Rmu_sc0006895.1_g000002 Rmu_sc0006895.1_g000005 Rmu_sc0007034.1_g000004 Rmu_sc0007104.1_g000006 Rmu_sc0008990.1_g000003 Rmu_sc0008990.1_g000004 Rmu_sc0009106.1_g000003 Rmu_sc0009516.1_g000002 Rmu_sc0009516.1_g000003 Rmu_sc0009516.1_g000004 Rmu_sc0009516.1_g000005 Rmu_sc0009645.1_g000001 Rmu_sc0010274.1_g000001 Rmu_sc0010274.1_g000002 Rmu_sc0010419.1_g000003 Rmu_sc0010917.1_g000017 Rmu_sc0011213.1_g000001 Rmu_sc0011228.1_g000007 Rmu_sc0011538.1_g000011 Rmu_sc0011538.1_g000014 Rmu_sc0011538.1_g000015 Rmu_sc0012211.1_g000006 Rmu_sc0012351.1_g000003 Rmu_sc0012351.1_g000005 Rmu_sc0012915.1_g000002 Rmu_sc0013088.1_g000001 Rmu_sc0013459.1_g000001 Rmu_sc0013765.1_g000004 Rmu_sc0013765.1_g000005 Rmu_sc0014003.1_g000012 Rmu_sc0014003.1_g000014 Rmu_sc0014698.1_g000001 Rmu_sc0015740.1_g000001 Rmu_sc0016429.1_g000003 Rmu_sc0018885.1_g000001 Rmu_sc0020345.1_g000001 Rmu_sc0027791.1_g000001 Rmu_sc0037325.1_g000001 Rmu_ssc0000010.1_g000024 Rmu_ssc0000010.1_g000025 Rmu_ssc0000083.1_g000021 Rmu_ssc0000340.1_g000002 Rmu_ssc0000386.1_g000002 Rmu_ssc0000386.1_g000024 Rmu_ssc0000386.1_g000025 Rmu_ssc0000386.1_g000034 Rmu_ssc0000386.1_g000037 Rmu_ssc0000477.1_g000001
rosa_roxburghii Rroxscaffold_161G00448010 Rroxscaffold_164G00436080 Rroxscaffold_1G00024500 Rroxscaffold_2G00124290 Rroxscaffold_3G00222940 Rroxscaffold_3G00227440 Rroxscaffold_4G00304810 Rroxscaffold_4G00330180 Rroxscaffold_4G00330200 Rroxscaffold_5G00356620 Rroxscaffold_5G00358170 Rroxscaffold_5G00360880 Rroxscaffold_5G00361220 Rroxscaffold_5G00361950 Rroxscaffold_5G00361960 Rroxscaffold_5G00361990 Rroxscaffold_5G00362370 Rroxscaffold_5G00364540 Rroxscaffold_5G00364550 Rroxscaffold_5G00364580 Rroxscaffold_5G00364600 Rroxscaffold_6G00393290 Rroxscaffold_6G00412680 Rroxscaffold_6G00412790 Rroxscaffold_6G00413470 Rroxscaffold_6G00413720 Rroxscaffold_6G00416070 Rroxscaffold_7G00205400
rosa_rugosa Rorug01G0017300 Rorug01G0017400 Rorug01G0018000 Rorug01G0018100 Rorug01G0211500 Rorug02G0638200 Rorug03G0070000 Rorug03G0071200 Rorug03G0081000 Rorug03G0086500 Rorug03G0089300 Rorug03G0095300 Rorug03G0096000 Rorug03G0096000 Rorug04G0055000 Rorug04G0078300 Rorug04G0104100.1 Rorug04G0113800 Rorug04G0126700 Rorug04G0128000 Rorug04G0145900 Rorug04G0148700 Rorug04G0149100 Rorug04G0149100 Rorug04G0149200 Rorug04G0149300 Rorug04G0154900 Rorug04G0180400 Rorug04G0180500 Rorug04G0180700 Rorug04G0180800 Rorug04G0401500 Rorug04G0402100 Rorug05G0288600 Rorug05G0334100 Rorug07G0176400
rosa_samantha Rh1DG043200 Rh1DG043500 Rh1DG043900 Rh1DG222800 Rh3CG039900 Rh3CG156200 Rh3CG328500 Rh3CG328800 Rh3DG165000 Rh4AG208400 Rh4BG205600 Rh4BG213900 Rh4BG243900 Rh4CG198800 Rh4DG168600 Rh4DG180100 Rh4DG180300 Rh4DG180600 Rh4DG181200 Rh4DG181600 Rh4DG181700 Rh4DG183700 Rh4DG184000 Rh4DG184400 Rh4DG184700 Rh4DG206100 Rh4DG206200 Rh4DG206300 Rh4DG215600 Rh4DG238700 Rh4DG238900 Rh5DG390300
rosa_wichuraiana Rw0G005050 Rw0G009260 Rw0G009280 Rw0G015600 Rw0G023570 Rw1G002140 Rw1G002170 Rw1G002210 Rw1G002240 Rw1G019500 Rw2G015490 Rw3G003020 Rw3G010900 Rw3G012030 Rw3G012790 Rw3G013050 Rw3G013540 Rw3G013640 Rw3G013650 Rw3G026050 Rw3G026070 Rw4G015740 Rw4G015790 Rw4G015910 Rw4G015930 Rw4G015950 Rw4G017900 Rw4G017930 Rw4G018440 Rw4G018450 Rw4G018530 Rw4G020720 Rw4G020760 Rw5G019250 Rw5G034370 Rw7G018700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 2655, 3775
AatII GACGTC 1 cut(s) 3764
Acc16I TGCGCA 2 cut(s) 2761, 2918
AccB1I GGYRCC 1 cut(s) 1946
AccB7I CCANNNNNTGG 1 cut(s) 565
AccBSI CCGCTC 2 cut(s) 1539, 3975
AccI GTMKAC 2 cut(s) 2059, 3577
AccII CGCG 2 cut(s) 163, 3968
AccIII TCCGGA 2 cut(s) 2662, 2719
AclI AACGTT 1 cut(s) 1739
AclWI GGATC 2 cut(s) 737, 3716
AcoI YGGCCR 2 cut(s) 588, 3719
AcsI RAATTY 4 cut(s) 8, 1606, 2127, 3747
AcuI CTGAAG 4 cut(s) 84, 1904, 2753, 3662
AcyI GRCGYC 2 cut(s) 268, 3761
AfaI GTAC 4 cut(s) 1110, 2094, 3325, 3427
AfiI CCNNNNNNNGG 9 cut(s) 178, 565, 972, 2243, 2897, 3176, 3191, 3403, 3625
AflIII ACRYGT 4 cut(s) 1597, 1804, 2266, 3572
AjnI CCWGG 1 cut(s) 171
AjuI GAANNNNNNNTTGG 2 cut(s) 869, 901
Alw21I GWGCWC 2 cut(s) 28, 2524
AlwI GGATC 2 cut(s) 737, 3716
AlwNI CAGNNNCTG 2 cut(s) 1037, 2776
Aor13HI TCCGGA 2 cut(s) 2662, 2719
AoxI GGCC 9 cut(s) 57, 588, 1904, 2245, 2819, 3178, 3719, 3976, 3986
ApeKI GCWGC 8 cut(s) 109, 758, 915, 2757, 3009, 3075, 3141, 3252
ApoI RAATTY 4 cut(s) 8, 1606, 2127, 3747
ArsI GACNNNNNNTTYG 4 cut(s) 3008, 3040, 3716, 3748
Asp700I GAANNNNTTC 4 cut(s) 966, 2232, 2634, 3747
AspA2I CCTAGG 2 cut(s) 971, 1907
AspLEI GCGC 3 cut(s) 1146, 2762, 2919
AspS9I GGNCC 7 cut(s) 57, 121, 1904, 2245, 2819, 3178, 3977
AsuC2I CCSGG 1 cut(s) 3671
AsuHPI GGTGA 5 cut(s) 208, 775, 1355, 3607, 3901
AsuII TTCGAA 1 cut(s) 1550
AvaII GGWCC 1 cut(s) 121
AvrII CCTAGG 2 cut(s) 971, 1907
AxyI CCTNAGG 2 cut(s) 2294, 3291
BaeGI GKGCMC 1 cut(s) 3290
BalI TGGCCA 1 cut(s) 590
BanI GGYRCC 1 cut(s) 1946
BarI GAAGNNNNNNTAC 2 cut(s) 126, 158
BbsI GAAGAC 3 cut(s) 1449, 2651, 2718
Bbv12I GWGCWC 2 cut(s) 28, 2524
BbvI GCAGC 8 cut(s) 96, 745, 927, 2744, 2996, 3062, 3128, 3239
BceAI ACGGC 3 cut(s) 2466, 3394, 3730
BcgI CGANNNNNNTGC 2 cut(s) 2633, 2667
BciT130I CCWGG 1 cut(s) 173
BclI TGATCA 1 cut(s) 1791
BcnI CCSGG 1 cut(s) 3671
BfaI CTAG 8 cut(s) 417, 972, 1581, 1908, 2655, 2870, 3245, 3500
BfmI CTRYAG 1 cut(s) 2583
BglII AGATCT 1 cut(s) 1589
BlnI CCTAGG 2 cut(s) 971, 1907
BlpI GCTNAGC 1 cut(s) 219
Bme1390I CCNGG 2 cut(s) 173, 3671
Bme18I GGWCC 1 cut(s) 121
BmgT120I GGNCC 7 cut(s) 57, 121, 1904, 2245, 2819, 3178, 3977
BmiI GGNNCC 1 cut(s) 1948
BmrFI CCNGG 2 cut(s) 173, 3671
BmrI ACTGGG 5 cut(s) 1911, 1931, 2252, 2520, 3576
BmuI ACTGGG 5 cut(s) 1911, 1931, 2252, 2520, 3576
BpiI GAAGAC 3 cut(s) 1449, 2651, 2718
BplI GAGNNNNNCTC 2 cut(s) 2506, 2538
BpmI CTGGAG 2 cut(s) 1988, 2848
Bpu10I CCTNAGC 1 cut(s) 2892
Bpu1102I GCTNAGC 1 cut(s) 219
Bpu14I TTCGAA 1 cut(s) 1550
BpuMI CCSGG 1 cut(s) 3671
BsaAI YACGTR 1 cut(s) 1598
BsaHI GRCGYC 2 cut(s) 268, 3761
BsaI GGTCTC 1 cut(s) 2909
BsaJI CCNNGG 8 cut(s) 172, 907, 971, 1907, 2493, 2743, 3190, 3966
BsaWI WCCGGW 3 cut(s) 2336, 2662, 2719
BsaXI ACNNNNNCTCC 2 cut(s) 168, 198
Bsc4I CCNNNNNNNGG 9 cut(s) 178, 565, 972, 2243, 2897, 3176, 3191, 3403, 3625
Bse1I ACTGG 9 cut(s) 1906, 1926, 2051, 2247, 2526, 2865, 2952, 3582, 4007
Bse21I CCTNAGG 2 cut(s) 2294, 3291
Bse3DI GCAATG 4 cut(s) 786, 2733, 3282, 3600
BseAI TCCGGA 2 cut(s) 2662, 2719
BseBI CCWGG 1 cut(s) 173
BseDI CCNNGG 8 cut(s) 172, 907, 971, 1907, 2493, 2743, 3190, 3966
BseLI CCNNNNNNNGG 9 cut(s) 178, 565, 972, 2243, 2897, 3176, 3191, 3403, 3625
BseMI GCAATG 4 cut(s) 786, 2733, 3282, 3600
BseMII CTCAG 9 cut(s) 233, 642, 713, 1879, 2301, 2768, 2883, 2957, 3334
BseNI ACTGG 9 cut(s) 1906, 1926, 2051, 2247, 2526, 2865, 2952, 3582, 4007
BseRI GAGGAG 2 cut(s) 2498, 2577
BseSI GKGCMC 1 cut(s) 3290
BseXI GCAGC 8 cut(s) 96, 745, 927, 2744, 2996, 3062, 3128, 3239
BsgI GTGCAG 5 cut(s) 2962, 3028, 3094, 3113, 3238
Bsh1236I CGCG 2 cut(s) 163, 3968
BshFI GGCC 9 cut(s) 59, 590, 1906, 2247, 2821, 3180, 3721, 3978, 3988
BshNI GGYRCC 1 cut(s) 1946
BsiHKAI GWGCWC 2 cut(s) 28, 2524
BsiSI CCGG 4 cut(s) 2337, 2663, 2720, 3671
BslFI GGGAC 6 cut(s) 527, 1208, 2661, 2683, 3172, 3927
BslI CCNNNNNNNGG 9 cut(s) 178, 565, 972, 2243, 2897, 3176, 3191, 3403, 3625
BsmBI CGTCTC 2 cut(s) 3466, 3626
BsmFI GGGAC 6 cut(s) 527, 1208, 2661, 2683, 3172, 3927
BsmI GAATGC 2 cut(s) 2005, 2407
BsnI GGCC 9 cut(s) 59, 590, 1906, 2247, 2821, 3180, 3721, 3978, 3988
Bso31I GGTCTC 1 cut(s) 2909
Bsp119I TTCGAA 1 cut(s) 1550
Bsp1286I GDGCHC 3 cut(s) 28, 2524, 3290
Bsp13I TCCGGA 2 cut(s) 2662, 2719
Bsp1720I GCTNAGC 1 cut(s) 219
Bsp19I CCATGG 1 cut(s) 2743
BspANI GGCC 9 cut(s) 59, 590, 1906, 2247, 2821, 3180, 3721, 3978, 3988
BspCNI CTCAG 9 cut(s) 232, 643, 714, 1878, 2302, 2769, 2884, 2956, 3333
BspEI TCCGGA 2 cut(s) 2662, 2719
BspFNI CGCG 2 cut(s) 163, 3968
BspHI TCATGA 2 cut(s) 643, 2544
BspLI GGNNCC 1 cut(s) 1948
BspPI GGATC 2 cut(s) 737, 3716
BspQI GCTCTTC 1 cut(s) 3681
BspT104I TTCGAA 1 cut(s) 1550
BspT107I GGYRCC 1 cut(s) 1946
BspTNI GGTCTC 1 cut(s) 2909
BsrBI CCGCTC 2 cut(s) 1539, 3975
BsrDI GCAATG 4 cut(s) 786, 2733, 3282, 3600
BsrI ACTGG 9 cut(s) 1906, 1926, 2051, 2247, 2526, 2865, 2952, 3582, 4007
BssECI CCNNGG 8 cut(s) 172, 907, 971, 1907, 2493, 2743, 3190, 3966
BssNI GRCGYC 2 cut(s) 268, 3761
BssT1I CCWWGG 5 cut(s) 971, 1907, 2493, 2743, 3190
Bst2UI CCWGG 1 cut(s) 173
Bst4CI ACNGT 7 cut(s) 958, 1275, 1545, 2717, 3201, 3360, 3508
BstACI GRCGYC 2 cut(s) 268, 3761
BstAPI GCANNNNNTGC 2 cut(s) 2000, 2223
BstBAI YACGTR 1 cut(s) 1598
BstBI TTCGAA 1 cut(s) 1550
BstC8I GCNNGC 6 cut(s) 225, 662, 2181, 2185, 3178, 3719
BstDSI CCRYGG 3 cut(s) 907, 2743, 3966
BstENI CCTNNNNNAGG 1 cut(s) 2895
BstFNI CGCG 2 cut(s) 163, 3968
BstHHI GCGC 3 cut(s) 1146, 2762, 2919
BstMWI GCNNNNNNNGC 8 cut(s) 56, 224, 265, 274, 2000, 2223, 2506, 3960
BstNI CCWGG 1 cut(s) 173
BstNSI RCATGY 9 cut(s) 227, 1479, 1808, 1826, 1976, 2270, 2287, 3576, 3611
BstSCI CCNGG 2 cut(s) 171, 3669
BstSFI CTRYAG 1 cut(s) 2583
BstSLI GKGCMC 1 cut(s) 3290
BstUI CGCG 2 cut(s) 163, 3968
BstV1I GCAGC 8 cut(s) 96, 745, 927, 2744, 2996, 3062, 3128, 3239
BstV2I GAAGAC 3 cut(s) 1449, 2651, 2718
BstX2I RGATCY 3 cut(s) 729, 1589, 3708
BstYI RGATCY 3 cut(s) 729, 1589, 3708
Bsu36I CCTNAGG 2 cut(s) 2294, 3291
BsuRI GGCC 9 cut(s) 59, 590, 1906, 2247, 2821, 3180, 3721, 3978, 3988
BtgI CCRYGG 3 cut(s) 907, 2743, 3966
BtsI GCAGTG 4 cut(s) 943, 2001, 2507, 3218
BtsIMutI CAGTG 7 cut(s) 943, 1280, 1541, 2001, 2507, 3218, 3589
Cac8I GCNNGC 6 cut(s) 225, 662, 2181, 2185, 3178, 3719
CaiI CAGNNNCTG 2 cut(s) 1037, 2776
CciI TCATGA 2 cut(s) 643, 2544
CfoI GCGC 3 cut(s) 1146, 2762, 2919
Cfr13I GGNCC 7 cut(s) 57, 121, 1904, 2245, 2819, 3178, 3977
Cfr42I CCGCGG 1 cut(s) 3969
CseI GACGC 1 cut(s) 257
Csp6I GTAC 4 cut(s) 1109, 2093, 3324, 3426
CspCI CAANNNNNGTGG 4 cut(s) 939, 974, 1081, 1116
CviQI GTAC 4 cut(s) 1109, 2093, 3324, 3426
DraI TTTAAA 2 cut(s) 1233, 1744
DrdI GACNNNNNNGTC 2 cut(s) 2655, 3775
DseDI GACNNNNNNGTC 2 cut(s) 2655, 3775
EaeI YGGCCR 2 cut(s) 588, 3719
Eco130I CCWWGG 5 cut(s) 971, 1907, 2493, 2743, 3190
Eco31I GGTCTC 1 cut(s) 2909
Eco47I GGWCC 1 cut(s) 121
Eco57I CTGAAG 4 cut(s) 84, 1904, 2753, 3662
Eco81I CCTNAGG 2 cut(s) 2294, 3291
EcoNI CCTNNNNNAGG 1 cut(s) 2895
EcoRII CCWGG 1 cut(s) 171
EcoT14I CCWWGG 5 cut(s) 971, 1907, 2493, 2743, 3190
ErhI CCWWGG 5 cut(s) 971, 1907, 2493, 2743, 3190
Esp3I CGTCTC 2 cut(s) 3466, 3626
FalI AAGNNNNNCTT 6 cut(s) 1313, 1345, 1344, 1376, 2982, 3014
FaqI GGGAC 6 cut(s) 527, 1208, 2661, 2683, 3172, 3927
FauI CCCGC 2 cut(s) 3169, 3612
FbaI TGATCA 1 cut(s) 1791
FblI GTMKAC 2 cut(s) 2059, 3577
FspBI CTAG 8 cut(s) 417, 972, 1581, 1908, 2655, 2870, 3245, 3500
FspI TGCGCA 2 cut(s) 2761, 2918
GlaI GCGC 3 cut(s) 1145, 2761, 2918
GsuI CTGGAG 2 cut(s) 1988, 2848
HaeIII GGCC 9 cut(s) 59, 590, 1906, 2247, 2821, 3180, 3721, 3978, 3988
HapII CCGG 4 cut(s) 2337, 2663, 2720, 3671
HgaI GACGC 1 cut(s) 257
HhaI GCGC 3 cut(s) 1146, 2762, 2919
Hin1I GRCGYC 2 cut(s) 268, 3761
Hin6I GCGC 3 cut(s) 1144, 2760, 2917
HinP1I GCGC 3 cut(s) 1144, 2760, 2917
HincII GTYRAC 6 cut(s) 1656, 1721, 1820, 2037, 2077, 3197
HindII GTYRAC 6 cut(s) 1656, 1721, 1820, 2037, 2077, 3197
HindIII AAGCTT 2 cut(s) 203, 2051
HpaI GTTAAC 1 cut(s) 2037
HpaII CCGG 4 cut(s) 2337, 2663, 2720, 3671
HphI GGTGA 5 cut(s) 208, 775, 1355, 3607, 3901
HpyCH4III ACNGT 7 cut(s) 958, 1275, 1545, 2717, 3201, 3360, 3508
HpyCH4IV ACGT 8 cut(s) 1446, 1454, 1597, 1739, 2672, 3023, 3089, 3761
HpyF10VI GCNNNNNNNGC 8 cut(s) 56, 224, 265, 274, 2000, 2223, 2506, 3960
HpySE526I ACGT 8 cut(s) 1446, 1454, 1597, 1739, 2672, 3023, 3089, 3761
Hsp92I GRCGYC 2 cut(s) 268, 3761
HspAI GCGC 3 cut(s) 1144, 2760, 2917
Kpn2I TCCGGA 2 cut(s) 2662, 2719
Ksp22I TGATCA 1 cut(s) 1791
KspAI GTTAAC 1 cut(s) 2037
KspI CCGCGG 1 cut(s) 3969
LguI GCTCTTC 1 cut(s) 3681
LmnI GCTCC 8 cut(s) 1969, 2485, 2497, 2527, 2743, 2867, 3072, 3138
Lsp1109I GCAGC 8 cut(s) 96, 745, 927, 2744, 2996, 3062, 3128, 3239
MaeI CTAG 8 cut(s) 417, 972, 1581, 1908, 2655, 2870, 3245, 3500
MaeII ACGT 8 cut(s) 1446, 1454, 1597, 1739, 2672, 3023, 3089, 3761
MaeIII GTNAC 7 cut(s) 785, 925, 938, 1447, 2321, 2351, 3295
MbiI CCGCTC 2 cut(s) 1539, 3975
MfeI CAATTG 7 cut(s) 278, 1074, 1644, 2510, 3309, 3401, 3937
MflI RGATCY 3 cut(s) 729, 1589, 3708
MhlI GDGCHC 3 cut(s) 28, 2524, 3290
MlsI TGGCCA 1 cut(s) 590
MluNI TGGCCA 1 cut(s) 590
MlyI GAGTC 2 cut(s) 125, 2882
MmeI TCCRAC 3 cut(s) 1021, 1360, 2826
Mox20I TGGCCA 1 cut(s) 590
MroI TCCGGA 2 cut(s) 2662, 2719
MroXI GAANNNNTTC 4 cut(s) 966, 2232, 2634, 3747
MscI TGGCCA 1 cut(s) 590
MslI CAYNNNNRTG 1 cut(s) 228
Msp20I TGGCCA 1 cut(s) 590
MspA1I CMGCKG 2 cut(s) 62, 3968
MspI CCGG 4 cut(s) 2337, 2663, 2720, 3671
MspR9I CCNGG 2 cut(s) 173, 3671
MunI CAATTG 7 cut(s) 278, 1074, 1644, 2510, 3309, 3401, 3937
Mva1269I GAATGC 2 cut(s) 2005, 2407
MvaI CCWGG 1 cut(s) 173
MvnI CGCG 2 cut(s) 163, 3968
MwoI GCNNNNNNNGC 8 cut(s) 56, 224, 265, 274, 2000, 2223, 2506, 3960
NciI CCSGG 1 cut(s) 3671
NcoI CCATGG 1 cut(s) 2743
NlaIV GGNNCC 1 cut(s) 1948
NmeAIII GCCGAG 2 cut(s) 1662, 2431
NmuCI GTSAC 3 cut(s) 925, 938, 2351
NsbI TGCGCA 2 cut(s) 2761, 2918
NspI RCATGY 9 cut(s) 227, 1479, 1808, 1826, 1976, 2270, 2287, 3576, 3611
NspV TTCGAA 1 cut(s) 1550
PaeI GCATGC 1 cut(s) 227
PagI TCATGA 2 cut(s) 643, 2544
PciI ACATGT 3 cut(s) 1804, 2266, 3572
PciSI GCTCTTC 1 cut(s) 3681
PctI GAATGC 2 cut(s) 2005, 2407
PdmI GAANNNNTTC 4 cut(s) 966, 2232, 2634, 3747
PfeI GAWTC 8 cut(s) 87, 647, 1218, 1861, 2410, 2689, 3662, 3868
PflMI CCANNNNNTGG 1 cut(s) 565
PleI GAGTC 2 cut(s) 124, 2881
PpsI GAGTC 2 cut(s) 124, 2881
Ppu21I YACGTR 1 cut(s) 1598
PscI ACATGT 3 cut(s) 1804, 2266, 3572
Psp1406I AACGTT 1 cut(s) 1739
Psp6I CCWGG 1 cut(s) 171
PspGI CCWGG 1 cut(s) 171
PspN4I GGNNCC 1 cut(s) 1948
PspPI GGNCC 7 cut(s) 57, 121, 1904, 2245, 2819, 3178, 3977
PstNI CAGNNNCTG 2 cut(s) 1037, 2776
PsuI RGATCY 3 cut(s) 729, 1589, 3708
RsaI GTAC 4 cut(s) 1110, 2094, 3325, 3427
RsaNI GTAC 4 cut(s) 1109, 2093, 3324, 3426
RseI CAYNNNNRTG 1 cut(s) 228
SacII CCGCGG 1 cut(s) 3969
SapI GCTCTTC 1 cut(s) 3681
Sau96I GGNCC 7 cut(s) 57, 121, 1904, 2245, 2819, 3178, 3977
SchI GAGTC 2 cut(s) 125, 2882
ScrFI CCNGG 2 cut(s) 173, 3671
SduI GDGCHC 3 cut(s) 28, 2524, 3290
SfcI CTRYAG 1 cut(s) 2583
Sfr303I CCGCGG 1 cut(s) 3969
SfuI TTCGAA 1 cut(s) 1550
SgrBI CCGCGG 1 cut(s) 3969
SinI GGWCC 1 cut(s) 121
SmiMI CAYNNNNRTG 1 cut(s) 228
SphI GCATGC 1 cut(s) 227
SspI AATATT 1 cut(s) 1409
SspMI CTAG 8 cut(s) 417, 972, 1581, 1908, 2655, 2870, 3245, 3500
StyD4I CCNGG 2 cut(s) 171, 3669
StyI CCWWGG 5 cut(s) 971, 1907, 2493, 2743, 3190
TaaI ACNGT 7 cut(s) 958, 1275, 1545, 2717, 3201, 3360, 3508
TaiI ACGT 8 cut(s) 1449, 1457, 1600, 1742, 2675, 3026, 3092, 3764
TaqI TCGA 9 cut(s) 1226, 1550, 2043, 2555, 2628, 2643, 3005, 3334, 3779
TaqII GACCGA 1 cut(s) 109
TatI WGTACW 3 cut(s) 2092, 3323, 3425
TauI GCSGC 4 cut(s) 62, 1539, 3384, 3978
TfiI GAWTC 8 cut(s) 87, 647, 1218, 1861, 2410, 2689, 3662, 3868
TscAI CASTG 7 cut(s) 943, 1280, 1548, 2001, 2507, 3218, 3589
TseFI GTSAC 3 cut(s) 925, 938, 2351
TseI GCWGC 8 cut(s) 109, 758, 915, 2757, 3009, 3075, 3141, 3252
Tsp45I GTSAC 3 cut(s) 925, 938, 2351
TspGWI ACGGA 3 cut(s) 924, 3386, 3877
TspRI CASTG 7 cut(s) 943, 1280, 1548, 2001, 2507, 3218, 3589
Van91I CCANNNNNTGG 1 cut(s) 565
VpaK11BI GGWCC 1 cut(s) 121
XagI CCTNNNNNAGG 1 cut(s) 2895
XapI RAATTY 4 cut(s) 8, 1606, 2127, 3747
XbaI TCTAGA 2 cut(s) 2869, 3499
XceI RCATGY 9 cut(s) 227, 1479, 1808, 1826, 1976, 2270, 2287, 3576, 3611
XcmI CCANNNNNNNNNTGG 2 cut(s) 598, 1963
XmaJI CCTAGG 2 cut(s) 971, 1907
XmiI GTMKAC 2 cut(s) 2059, 3577
XmnI GAANNNNTTC 4 cut(s) 966, 2232, 2634, 3747
XspI CTAG 8 cut(s) 417, 972, 1581, 1908, 2655, 2870, 3245, 3500
ZraI GACGTC 1 cut(s) 3762
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.