disease resistance
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Rx_N | PF18052 | 13 - 97 | 7.3e-21 | Rx N-terminal domain |
| nSTAND1 | PF20703 | 168 - 390 | 2.4e-06 | Novel STAND NTPase 1 |
| NB-ARC | PF00931 | 177 - 350 | 6.7e-35 | NB-ARC domain |
| AAA_22 | PF13401 | 200 - 308 | 3.9e-07 | AAA domain |
| WHD_DRP | PF23559 | 437 - 510 | 3.6e-24 | Disease resistance protein Winged helix domain |
| LRR_14 | PF23598 | 520 - 774 | 1.3e-27 | Leucine-rich repeat region |
| LRR_R13L1-DRL21 | PF25019 | 645 - 769 | 4.9e-35 | R13L1/DRL21 LRRs |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1749 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2670 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2095 |
| AccI | GTMKAC | 1 cut(s) | 156 |
| AccII | CGCG | 2 cut(s) | 794, 2386 |
| AciI | CCGC | 4 cut(s) | 343, 1822, 2386, 2586 |
| AclWI | GGATC | 5 cut(s) | 210, 752, 1342, 2335, 2377 |
| AdeI | CACNNNGTG | 1 cut(s) | 2095 |
| AfaI | GTAC | 5 cut(s) | 471, 780, 1125, 2115, 2262 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 626, 1405, 2095, 2264, 2465 |
| AflII | CTTAAG | 1 cut(s) | 736 |
| AflIII | ACRYGT | 1 cut(s) | 1618 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1972 |
| AjnI | CCWGG | 4 cut(s) | 619, 1792, 1855, 1927 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2012, 2044 |
| Alw21I | GWGCWC | 1 cut(s) | 2536 |
| Alw26I | GTCTC | 5 cut(s) | 279, 476, 493, 1079, 1864 |
| AlwI | GGATC | 5 cut(s) | 210, 752, 1342, 2335, 2377 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1928, 2437 |
| Ama87I | CYCGRG | 2 cut(s) | 2264, 2492 |
| AoxI | GGCC | 5 cut(s) | 412, 2081, 2122, 2387, 2427 |
| ApaI | GGGCCC | 1 cut(s) | 2431 |
| ApeKI | GCWGC | 7 cut(s) | 26, 62, 112, 407, 773, 930, 2235 |
| AseI | ATTAAT | 1 cut(s) | 1187 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 311, 395, 981, 1237, 1788 |
| AspLEI | GCGC | 3 cut(s) | 1161, 2386, 2458 |
| AspS9I | GGNCC | 4 cut(s) | 413, 1925, 2427, 2428 |
| AsuHPI | GGTGA | 9 cut(s) | 61, 208, 316, 400, 1206, 1370, 2354, 2578, 2617 |
| AvaI | CYCGRG | 2 cut(s) | 2264, 2492 |
| AvaII | GGWCC | 1 cut(s) | 1925 |
| BaeGI | GKGCMC | 1 cut(s) | 2431 |
| BanII | GRGCYC | 1 cut(s) | 2431 |
| BbsI | GAAGAC | 1 cut(s) | 216 |
| Bbv12I | GWGCWC | 1 cut(s) | 2536 |
| BbvCI | CCTCAGC | 1 cut(s) | 30 |
| BbvI | GCAGC | 7 cut(s) | 13, 49, 99, 419, 785, 942, 2222 |
| BccI | CCATC | 8 cut(s) | 1285, 1354, 1365, 1399, 1997, 2194, 2443, 2557 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1287, 1321 |
| BciT130I | CCWGG | 4 cut(s) | 621, 1794, 1857, 1929 |
| BciVI | GTATCC | 1 cut(s) | 718 |
| BclI | TGATCA | 1 cut(s) | 1812 |
| BcoDI | GTCTC | 5 cut(s) | 279, 476, 493, 1079, 1864 |
| BfaI | CTAG | 7 cut(s) | 432, 626, 1130, 1400, 2117, 2139, 2201 |
| BfmI | CTRYAG | 1 cut(s) | 2475 |
| BfoI | RGCGCY | 1 cut(s) | 2459 |
| BfrI | CTTAAG | 1 cut(s) | 736 |
| BfuI | GTATCC | 1 cut(s) | 718 |
| BglII | AGATCT | 1 cut(s) | 100 |
| BisI | GCNGC | 9 cut(s) | 27, 63, 113, 408, 774, 931, 1823, 2236, 2387 |
| BlsI | GCNGC | 9 cut(s) | 28, 64, 114, 409, 775, 932, 1824, 2237, 2388 |
| BmcAI | AGTACT | 2 cut(s) | 471, 2262 |
| Bme1390I | CCNGG | 4 cut(s) | 621, 1794, 1857, 1929 |
| Bme18I | GGWCC | 1 cut(s) | 1925 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1972 |
| BmeT110I | CYCGRG | 2 cut(s) | 2264, 2492 |
| BmgT120I | GGNCC | 4 cut(s) | 413, 1925, 2427, 2428 |
| BmiI | GGNNCC | 1 cut(s) | 2429 |
| BmrFI | CCNGG | 4 cut(s) | 621, 1794, 1857, 1929 |
| BmrI | ACTGGG | 2 cut(s) | 2252, 2532 |
| BmsI | GCATC | 4 cut(s) | 436, 942, 1146, 1494 |
| BmuI | ACTGGG | 2 cut(s) | 2252, 2532 |
| BpiI | GAAGAC | 1 cut(s) | 216 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 473, 505 |
| BpmI | CTGGAG | 1 cut(s) | 475 |
| Bpu10I | CCTNAGC | 2 cut(s) | 30, 1365 |
| BpuEI | CTTGAG | 8 cut(s) | 51, 113, 441, 548, 906, 1705, 1889, 2540 |
| BsaAI | YACGTR | 1 cut(s) | 1619 |
| BsaI | GGTCTC | 2 cut(s) | 279, 476 |
| BsaJI | CCNNGG | 3 cut(s) | 45, 1585, 1793 |
| BsaWI | WCCGGW | 1 cut(s) | 1887 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 524, 554, 2244, 2274, 2518, 2548 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 626, 1405, 2095, 2264, 2465 |
| Bse1I | ACTGG | 7 cut(s) | 596, 852, 1052, 1957, 2258, 2450, 2538 |
| Bse3DI | GCAATG | 3 cut(s) | 333, 2411, 2486 |
| BseBI | CCWGG | 4 cut(s) | 621, 1794, 1857, 1929 |
| BseDI | CCNNGG | 3 cut(s) | 45, 1585, 1793 |
| BseGI | GGATG | 8 cut(s) | 247, 856, 1277, 1345, 1365, 1376, 2454, 2691 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 626, 1405, 2095, 2264, 2465 |
| BseMI | GCAATG | 3 cut(s) | 333, 2411, 2486 |
| BseMII | CTCAG | 5 cut(s) | 21, 1379, 2322, 2656, 2741 |
| BseNI | ACTGG | 7 cut(s) | 596, 852, 1052, 1957, 2258, 2450, 2538 |
| BseRI | GAGGAG | 4 cut(s) | 545, 907, 1424, 2510 |
| BseSI | GKGCMC | 1 cut(s) | 2431 |
| BseXI | GCAGC | 7 cut(s) | 13, 49, 99, 419, 785, 942, 2222 |
| Bsh1236I | CGCG | 2 cut(s) | 794, 2386 |
| BshFI | GGCC | 5 cut(s) | 414, 2083, 2124, 2389, 2429 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2536 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2264, 2492 |
| BsiSI | CCGG | 2 cut(s) | 1888, 2678 |
| BslFI | GGGAC | 3 cut(s) | 304, 2240, 2676 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 626, 1405, 2095, 2264, 2465 |
| BsmAI | GTCTC | 5 cut(s) | 279, 476, 493, 1079, 1864 |
| BsmBI | CGTCTC | 2 cut(s) | 493, 1864 |
| BsmFI | GGGAC | 3 cut(s) | 304, 2240, 2676 |
| BsmI | GAATGC | 2 cut(s) | 621, 1025 |
| BsnI | GGCC | 5 cut(s) | 414, 2083, 2124, 2389, 2429 |
| Bso31I | GGTCTC | 2 cut(s) | 279, 476 |
| BsoBI | CYCGRG | 2 cut(s) | 2264, 2492 |
| Bsp120I | GGGCCC | 1 cut(s) | 2427 |
| Bsp1286I | GDGCHC | 2 cut(s) | 2431, 2536 |
| BspACI | CCGC | 4 cut(s) | 343, 1822, 2386, 2586 |
| BspANI | GGCC | 5 cut(s) | 414, 2083, 2124, 2389, 2429 |
| BspCNI | CTCAG | 5 cut(s) | 22, 1378, 2323, 2655, 2740 |
| BspFNI | CGCG | 2 cut(s) | 794, 2386 |
| BspHI | TCATGA | 1 cut(s) | 658 |
| BspLI | GGNNCC | 1 cut(s) | 2429 |
| BspPI | GGATC | 5 cut(s) | 210, 752, 1342, 2335, 2377 |
| BspTI | CTTAAG | 1 cut(s) | 736 |
| BspTNI | GGTCTC | 2 cut(s) | 279, 476 |
| BsrDI | GCAATG | 3 cut(s) | 333, 2411, 2486 |
| BsrI | ACTGG | 7 cut(s) | 596, 852, 1052, 1957, 2258, 2450, 2538 |
| BssECI | CCNNGG | 3 cut(s) | 45, 1585, 1793 |
| BssT1I | CCWWGG | 2 cut(s) | 45, 1585 |
| Bst2UI | CCWGG | 4 cut(s) | 621, 1794, 1857, 1929 |
| Bst4CI | ACNGT | 4 cut(s) | 487, 1875, 2360, 2479 |
| Bst6I | CTCTTC | 3 cut(s) | 520, 810, 987 |
| BstAFI | CTTAAG | 1 cut(s) | 736 |
| BstBAI | YACGTR | 1 cut(s) | 1619 |
| BstC8I | GCNNGC | 3 cut(s) | 412, 1025, 2594 |
| BstF5I | GGATG | 8 cut(s) | 247, 856, 1277, 1345, 1365, 1376, 2454, 2691 |
| BstFNI | CGCG | 2 cut(s) | 794, 2386 |
| BstH2I | RGCGCY | 1 cut(s) | 2459 |
| BstHHI | GCGC | 3 cut(s) | 1161, 2386, 2458 |
| BstMAI | GTCTC | 5 cut(s) | 279, 476, 493, 1079, 1864 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 224, 501, 2021, 2080, 2497 |
| BstNI | CCWGG | 4 cut(s) | 621, 1794, 1857, 1929 |
| BstNSI | RCATGY | 2 cut(s) | 1538, 2596 |
| BstSCI | CCNGG | 4 cut(s) | 619, 1792, 1855, 1927 |
| BstSFI | CTRYAG | 1 cut(s) | 2475 |
| BstSLI | GKGCMC | 1 cut(s) | 2431 |
| BstUI | CGCG | 2 cut(s) | 794, 2386 |
| BstV1I | GCAGC | 7 cut(s) | 13, 49, 99, 419, 785, 942, 2222 |
| BstV2I | GAAGAC | 1 cut(s) | 216 |
| BstX2I | RGATCY | 4 cut(s) | 100, 202, 744, 2327 |
| BstYI | RGATCY | 4 cut(s) | 100, 202, 744, 2327 |
| BsuI | GTATCC | 1 cut(s) | 718 |
| BsuRI | GGCC | 5 cut(s) | 414, 2083, 2124, 2389, 2429 |
| BtgZI | GCGATG | 1 cut(s) | 519 |
| BtsCI | GGATG | 8 cut(s) | 247, 856, 1277, 1345, 1365, 1376, 2454, 2691 |
| BtsIMutI | CAGTG | 3 cut(s) | 2365, 2484, 2735 |
| Cac8I | GCNNGC | 3 cut(s) | 412, 1025, 2594 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1928, 2437 |
| CciI | TCATGA | 1 cut(s) | 658 |
| CfoI | GCGC | 3 cut(s) | 1161, 2386, 2458 |
| Cfr13I | GGNCC | 4 cut(s) | 413, 1925, 2427, 2428 |
| CseI | GACGC | 2 cut(s) | 276, 800 |
| Csp6I | GTAC | 5 cut(s) | 470, 779, 1124, 2114, 2261 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 700, 735 |
| CviAII | CATG | 9 cut(s) | 659, 686, 973, 1206, 1520, 1535, 2190, 2351, 2593 |
| CviQI | GTAC | 5 cut(s) | 470, 779, 1124, 2114, 2261 |
| DraI | TTTAAA | 3 cut(s) | 1194, 1432, 1953 |
| DraIII | CACNNNGTG | 1 cut(s) | 2095 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2670 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1972 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2670 |
| Eam1104I | CTCTTC | 3 cut(s) | 520, 810, 987 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1972 |
| EarI | CTCTTC | 3 cut(s) | 520, 810, 987 |
| Eco130I | CCWWGG | 2 cut(s) | 45, 1585 |
| Eco147I | AGGCCT | 1 cut(s) | 2124 |
| Eco24I | GRGCYC | 1 cut(s) | 2431 |
| Eco31I | GGTCTC | 2 cut(s) | 279, 476 |
| Eco47I | GGWCC | 1 cut(s) | 1925 |
| Eco88I | CYCGRG | 2 cut(s) | 2264, 2492 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1925 |
| EcoRI | GAATTC | 1 cut(s) | 71 |
| EcoRII | CCWGG | 4 cut(s) | 619, 1792, 1855, 1927 |
| EcoT14I | CCWWGG | 2 cut(s) | 45, 1585 |
| EcoT38I | GRGCYC | 1 cut(s) | 2431 |
| ErhI | CCWWGG | 2 cut(s) | 45, 1585 |
| Esp3I | CGTCTC | 2 cut(s) | 493, 1864 |
| FaeI | CATG | 9 cut(s) | 662, 689, 976, 1209, 1523, 1538, 2193, 2354, 2596 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 719, 751, 1328, 1360 |
| FaqI | GGGAC | 3 cut(s) | 304, 2240, 2676 |
| FatI | CATG | 9 cut(s) | 658, 685, 972, 1205, 1519, 1534, 2189, 2350, 2592 |
| FbaI | TGATCA | 1 cut(s) | 1812 |
| FblI | GTMKAC | 1 cut(s) | 156 |
| Fnu4HI | GCNGC | 9 cut(s) | 27, 63, 113, 408, 774, 931, 1823, 2236, 2387 |
| FokI | GGATG | 8 cut(s) | 254, 863, 1264, 1352, 1372, 1383, 2461, 2698 |
| FriOI | GRGCYC | 1 cut(s) | 2431 |
| Fsp4HI | GCNGC | 9 cut(s) | 27, 63, 113, 408, 774, 931, 1823, 2236, 2387 |
| FspBI | CTAG | 7 cut(s) | 432, 626, 1130, 1400, 2117, 2139, 2201 |
| GlaI | GCGC | 3 cut(s) | 1160, 2385, 2457 |
| GluI | GCNGC | 9 cut(s) | 27, 63, 113, 408, 774, 931, 1823, 2236, 2387 |
| GsuI | CTGGAG | 1 cut(s) | 475 |
| HaeII | RGCGCY | 1 cut(s) | 2459 |
| HaeIII | GGCC | 5 cut(s) | 414, 2083, 2124, 2389, 2429 |
| HapII | CCGG | 2 cut(s) | 1888, 2678 |
| HgaI | GACGC | 2 cut(s) | 276, 800 |
| HhaI | GCGC | 3 cut(s) | 1161, 2386, 2458 |
| Hin1II | CATG | 9 cut(s) | 662, 689, 976, 1209, 1523, 1538, 2193, 2354, 2596 |
| Hin6I | GCGC | 3 cut(s) | 1159, 2384, 2456 |
| HinP1I | GCGC | 3 cut(s) | 1159, 2384, 2456 |
| HincII | GTYRAC | 5 cut(s) | 157, 906, 1878, 2356, 2742 |
| HindII | GTYRAC | 5 cut(s) | 157, 906, 1878, 2356, 2742 |
| HindIII | AAGCTT | 1 cut(s) | 2072 |
| HpaI | GTTAAC | 2 cut(s) | 906, 2356 |
| HpaII | CCGG | 2 cut(s) | 1888, 2678 |
| HphI | GGTGA | 9 cut(s) | 61, 208, 316, 400, 1206, 1370, 2354, 2578, 2617 |
| Hpy166II | GTNNAC | 7 cut(s) | 18, 157, 906, 1124, 1878, 2356, 2742 |
| Hpy8I | GTNNAC | 7 cut(s) | 18, 157, 906, 1124, 1878, 2356, 2742 |
| Hpy99I | CGWCG | 1 cut(s) | 270 |
| HpyCH4III | ACNGT | 4 cut(s) | 487, 1875, 2360, 2479 |
| HpyCH4IV | ACGT | 1 cut(s) | 1618 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 224, 501, 2021, 2080, 2497 |
| HpySE526I | ACGT | 1 cut(s) | 1618 |
| Hsp92II | CATG | 9 cut(s) | 662, 689, 976, 1209, 1523, 1538, 2193, 2354, 2596 |
| HspAI | GCGC | 3 cut(s) | 1159, 2384, 2456 |
| Ksp22I | TGATCA | 1 cut(s) | 1812 |
| KspAI | GTTAAC | 2 cut(s) | 906, 2356 |
| LmnI | GCTCC | 4 cut(s) | 1590, 2468, 2497, 2539 |
| Lsp1109I | GCAGC | 7 cut(s) | 13, 49, 99, 419, 785, 942, 2222 |
| LweI | GCATC | 4 cut(s) | 436, 942, 1146, 1494 |
| MaeI | CTAG | 7 cut(s) | 432, 626, 1130, 1400, 2117, 2139, 2201 |
| MaeII | ACGT | 1 cut(s) | 1618 |
| MaeIII | GTNAC | 9 cut(s) | 49, 116, 567, 940, 953, 1465, 1489, 1913, 2516 |
| MfeI | CAATTG | 3 cut(s) | 1089, 1665, 1734 |
| MflI | RGATCY | 4 cut(s) | 100, 202, 744, 2327 |
| MhlI | GDGCHC | 2 cut(s) | 2431, 2536 |
| MlyI | GAGTC | 3 cut(s) | 113, 1069, 2262 |
| MmeI | TCCRAC | 3 cut(s) | 289, 1375, 2152 |
| MroXI | GAANNNNTTC | 5 cut(s) | 311, 395, 981, 1237, 1788 |
| MslI | CAYNNNNRTG | 2 cut(s) | 576, 684 |
| MspA1I | CMGCKG | 2 cut(s) | 112, 410 |
| MspCI | CTTAAG | 1 cut(s) | 736 |
| MspI | CCGG | 2 cut(s) | 1888, 2678 |
| MspR9I | CCNGG | 4 cut(s) | 621, 1794, 1857, 1929 |
| MssI | GTTTAAAC | 1 cut(s) | 1953 |
| MunI | CAATTG | 3 cut(s) | 1089, 1665, 1734 |
| Mva1269I | GAATGC | 2 cut(s) | 621, 1025 |
| MvaI | CCWGG | 4 cut(s) | 621, 1794, 1857, 1929 |
| MvnI | CGCG | 2 cut(s) | 794, 2386 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 224, 501, 2021, 2080, 2497 |
| NlaIII | CATG | 9 cut(s) | 662, 689, 976, 1209, 1523, 1538, 2193, 2354, 2596 |
| NlaIV | GGNNCC | 1 cut(s) | 2429 |
| NmuCI | GTSAC | 6 cut(s) | 49, 116, 567, 940, 953, 2516 |
| NspI | RCATGY | 2 cut(s) | 1538, 2596 |
| PaeI | GCATGC | 1 cut(s) | 2596 |
| PaeR7I | CTCGAG | 1 cut(s) | 2492 |
| PagI | TCATGA | 1 cut(s) | 658 |
| PceI | AGGCCT | 1 cut(s) | 2124 |
| PctI | GAATGC | 2 cut(s) | 621, 1025 |
| PdmI | GAANNNNTTC | 5 cut(s) | 311, 395, 981, 1237, 1788 |
| PfeI | GAWTC | 8 cut(s) | 133, 662, 869, 1211, 1713, 2158, 2166, 2704 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2095 |
| PfoI | TCCNGGA | 1 cut(s) | 1927 |
| PkrI | GCNGC | 9 cut(s) | 28, 64, 114, 409, 775, 932, 1824, 2237, 2388 |
| PleI | GAGTC | 3 cut(s) | 113, 1068, 2261 |
| PmeI | GTTTAAAC | 1 cut(s) | 1953 |
| PpsI | GAGTC | 3 cut(s) | 113, 1068, 2261 |
| Ppu21I | YACGTR | 1 cut(s) | 1619 |
| PpuMI | RGGWCCY | 1 cut(s) | 1925 |
| PshBI | ATTAAT | 1 cut(s) | 1187 |
| PsiI | TTATAA | 1 cut(s) | 1749 |
| Psp5II | RGGWCCY | 1 cut(s) | 1925 |
| Psp6I | CCWGG | 4 cut(s) | 619, 1792, 1855, 1927 |
| PspGI | CCWGG | 4 cut(s) | 619, 1792, 1855, 1927 |
| PspN4I | GGNNCC | 1 cut(s) | 2429 |
| PspOMI | GGGCCC | 1 cut(s) | 2427 |
| PspPI | GGNCC | 4 cut(s) | 413, 1925, 2427, 2428 |
| PspPPI | RGGWCCY | 1 cut(s) | 1925 |
| PspXI | VCTCGAGB | 1 cut(s) | 2492 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1928, 2437 |
| PsuI | RGATCY | 4 cut(s) | 100, 202, 744, 2327 |
| PvuII | CAGCTG | 2 cut(s) | 112, 410 |
| RsaI | GTAC | 5 cut(s) | 471, 780, 1125, 2115, 2262 |
| RsaNI | GTAC | 5 cut(s) | 470, 779, 1124, 2114, 2261 |
| RseI | CAYNNNNRTG | 2 cut(s) | 576, 684 |
| SalI | GTCGAC | 1 cut(s) | 155 |
| SatI | GCNGC | 9 cut(s) | 27, 63, 113, 408, 774, 931, 1823, 2236, 2387 |
| Sau96I | GGNCC | 4 cut(s) | 413, 1925, 2427, 2428 |
| ScaI | AGTACT | 2 cut(s) | 471, 2262 |
| SchI | GAGTC | 3 cut(s) | 113, 1069, 2262 |
| ScrFI | CCNGG | 4 cut(s) | 621, 1794, 1857, 1929 |
| SduI | GDGCHC | 2 cut(s) | 2431, 2536 |
| SfaNI | GCATC | 4 cut(s) | 436, 942, 1146, 1494 |
| SfcI | CTRYAG | 1 cut(s) | 2475 |
| Sfr274I | CTCGAG | 1 cut(s) | 2492 |
| SinI | GGWCC | 1 cut(s) | 1925 |
| SlaI | CTCGAG | 1 cut(s) | 2492 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 576, 684 |
| SphI | GCATGC | 1 cut(s) | 2596 |
| SseBI | AGGCCT | 1 cut(s) | 2124 |
| SsiI | CCGC | 4 cut(s) | 343, 1822, 2386, 2586 |
| SspI | AATATT | 1 cut(s) | 1427 |
| SspMI | CTAG | 7 cut(s) | 432, 626, 1130, 1400, 2117, 2139, 2201 |
| StuI | AGGCCT | 1 cut(s) | 2124 |
| StyD4I | CCNGG | 4 cut(s) | 619, 1792, 1855, 1927 |
| StyI | CCWWGG | 2 cut(s) | 45, 1585 |
| TaaI | ACNGT | 4 cut(s) | 487, 1875, 2360, 2479 |
| TaiI | ACGT | 1 cut(s) | 1621 |
| TaqI | TCGA | 9 cut(s) | 156, 172, 811, 1307, 2018, 2034, 2372, 2442, 2493 |
| TaqII | GACCGA | 1 cut(s) | 972 |
| TatI | WGTACW | 4 cut(s) | 469, 778, 2113, 2260 |
| TauI | GCSGC | 2 cut(s) | 1825, 2389 |
| TfiI | GAWTC | 8 cut(s) | 133, 662, 869, 1211, 1713, 2158, 2166, 2704 |
| TscAI | CASTG | 3 cut(s) | 2365, 2484, 2735 |
| TseFI | GTSAC | 6 cut(s) | 49, 116, 567, 940, 953, 2516 |
| TseI | GCWGC | 7 cut(s) | 26, 62, 112, 407, 773, 930, 2235 |
| Tsp45I | GTSAC | 6 cut(s) | 49, 116, 567, 940, 953, 2516 |
| TspRI | CASTG | 3 cut(s) | 2365, 2484, 2735 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2095 |
| Vha464I | CTTAAG | 1 cut(s) | 736 |
| VpaK11BI | GGWCC | 1 cut(s) | 1925 |
| VspI | ATTAAT | 1 cut(s) | 1187 |
| XceI | RCATGY | 2 cut(s) | 1538, 2596 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2357 |
| XhoI | CTCGAG | 1 cut(s) | 2492 |
| XmiI | GTMKAC | 1 cut(s) | 156 |
| XmnI | GAANNNNTTC | 5 cut(s) | 311, 395, 981, 1237, 1788 |
| XspI | CTAG | 7 cut(s) | 432, 626, 1130, 1400, 2117, 2139, 2201 |
| ZrmI | AGTACT | 2 cut(s) | 471, 2262 |