FvH4_6g48881

disease resistance

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
36719502 .. 36723624
4123 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g48881.t1

Sequence Viewer

Length: 3504 bp
ATGGCAGCTGAATTAGTGCTCACTTTCGCTGCTGAGGGGATTCTGACCAAGGTTTCTTTACTTGCCGCTAACAAAATTGCTCTTGCACGGGGGTTCCACACCGAACTGGAGAAGCTCAGACAGTCCTTATCCAACATTCAAGATTTCTTAGGCAGCGCTGCGGATCAGAGACTAGATGATCGGGGCAAGGCAGTAGAGACATGGGTCAAGAAACTTCAACAGGTAGCTGAAGACGCAGATGATGTTTTGGACGAGTTCGAGTATGAACTTCTCCGACAACAAGTGGAGCTGCGAAACCACATGAAGAGAAAGGTACTCAACTTCCTTTCTGCCTCCAATCCTCTTTGGTTTCGTTTCAAAATGGCGCATAAGATTAAGAAGATCAATGATTCTCTGGTGGAGCTTAAGAATGAGGCACCTTTAATCAACTTGGTTGCAAAAAAAGGAGATTCAAGGCAACGACCAGATCGAGTGCAAACTGATTCATTTTTTGAGAAGGGTGAAAAAGTTGTTGGAAGGGAAGACGCTGTGACAAAGATAGTTACGACGTTGATCAGCTCCGACATTCAGCAGAAGGATCTTTCAGTTATGGCCATTGTGGGAATGGCTGGACTGGGGAAGACGACTCTGGCTAAGTCAGTGTACAATGAATCTGCCATAAAAACACACTTCCATCAAAGAATATGGGTGTGTGTGTCTAACACTTTTGAAGTGGATACGATTTTAAGTCTGATGGTAGAATCTCTAACAAAAAAGGCTGGAATGAAAAGTCGAGATGCATTGCTTCAAGTTCTGAGAGAGGAGATTACAGGGAAGAGATATGTTCTGGTGCTCGATGATGTTTGGAATGAGGAGAGGGAAAAGTGGGATAGCTTGATGAGTTGTTTGTCAAAGCTGAATTCTAATCCCGGAAGCTGCATTATCGTCACCACCCGTAGCGCCTATGTGTCAACTATTGCTGAAACACTCCCCAGACCTGAGTTGAGAAAGCTATCAGAGGAGGAATGTTGGTCCATTATAAAGCAAAGAGCTTTAAATTTAGACGAAAATGGTTTCATTGATGCAGAACTAGAAAGAATTGGGAGGGCGATTGCTGAGAAGTGTGGAGGGGTACCCTTGGTTGCAAAGGTTTTGGGAAGCCTACTGGGCTCAAGAGCTAGTAAAGTTGAATGGTTGTCAATTCGAGACAATAGATTATGGGAACTACCTGAAGGGGAGGACAGGATCATGAAGGTATTGAAGTTGAGTTTTGATAATCTGGAGCCATCGCCATTGAAACAATGTTTTGCATATTGCTCAATGTTGAGAAAAGATTTCGAAATTGAAAGAGATAATTTGATCCAGCTTTGGATGGCTCAAGGATTACTCCAGACTTCTTCAACTGTCGAAAATCATCATGAGATGGAGGATACTGGCAAAGAATATTTTAACATTCTACTAAACAATTCCTTATTCCAAGAGGTAATTGAAGGAGGCACTATTACGAAGTACACAATGCACGATCTTGTGCATGATCTTGCAGAAAAAGTGTCCAAAAGTGAGCGCTTGACACAGGAGTTGAATGATGATGTTCGACATGTTGCACGTAGTCGACCTCCTTCAACACTAGAAAACATGTCAAAAGTAACTGTTGGGAGATTGCGCTCACTATTTTCAAATGACCAGGTCCCAGAGAACATTTTCTCCAAGTTCAAAGCAATGCGGGTCTTAAGTTTAGATACATCAAATATAGAAGAGTTGCCAAATTCATTTGGCAAGCTGAAGCACTTGAGATATCTAGACCTCTCAAAAACAAGAATCAAAGCACTTCCCAAGGCAATTGGCAAGCTCTATAACCTTCAAACATTGCGAATGCAGTATTGTGATCTGAACAAGCTTCCAAGGGAGATGCAAAACTTGATCAACTTGAGGCATCTTTGTGTTGATGAGTATATAGAATTTCCGGCTGGAATGTTCAGGGGACTAACTAATCTCCGGACATTGTCTTGCTTTAATGTGGGCGAGGAGATGGGTTGTAGAATTGAGGAATTGCGTGGCTTGAACCAACTGAAGGGTATGTTAACCATTCGTAATCTGGAAAATGTAAGGGATGAAGCGGAAGCGAAGAAGGCAAAATTAGAAGAGAAGAAAAACGTTGTGGAGTTAAGTTTGGACTTCTCTTGGAGACCACTAACCAGCAACATTCATGATGAGAATGTACTCGAAGGACTCCAACCACACACCGAGTTGGAAATCTTAAGGATTACATTCTTCATGGGTGATAGATTTCCTTCATGGATGATGAGAGTCCCTTTGCCTCTCAACAATTTGAAGAAGCTCGTCCTAACTGGGTGCCTCAAATGTGGAGAACTCTCGATTGGCCATCTACCGTTCCTTAGAGATGTGGAGATAAATGGTATGGATAACCTAAAACGCTTTGGAAGTGAAATTTATGGTTATGACCTTGTTTACGACGCTACACGAGAGAAGGAGACAATAGTCTTATTTCCAGCACTAAAAACATTAAAAATTTTCGATTGCCGTGGGCTAATTGAATGGATGGAAGCACCCACAACGACGACGACAAAAGTAGAGGTGTTCCCTTGCTTGGAGGAGTTGACGATAGTCAATTGTCCAAGTATTGGGTTCATTCGAATTCCCTACAGCACGGTATCCCTCCGCGAACTGCGGATTCAAAGCTGTCATGCATTATCTAGTATTGGCCAACTCGATCATTGCACCTCTCTACAGGAACTGCGGATTGGCAGCTGTAATGCATTATCTAGTATTGGCCTAACATCCTCACAGGGCCTTCCATCTCTCCGGAAATTGATTATTACATTCTGTGGTGGATTATCAACCCTACCGAGCGGGATTGAAAACTGCACCTCTCTTGAGCTATTACATGTATTCGGATGCAAAAATCTAGCGACCATTTCGTTTACACGAGTCCTCCCATCCCTCCGTAAATTGGGAGTTCTGTACTGCGATAATCTATCTTGCTTGGCTGTTCGGGAATATCGTCCCTCGTTTCAGGAGTTGAATCCATGTCTTGAGAAGTTGACTATATCGTTCTGCAAAGGTCTACAATCTCTTCCAGATTTCCGTAGTTTCACATCCCTCCGTGACTTGCGGTTAGGTCCTTTCTGGGAGAACCTCGACTCTTTCCCTGATTTTCAAGTTCAATCCCAACAACTTGTCTCATTAGAGTTGAACGGGTGGCCTAAGCTCAAGTCTCTTCCTCAACAAGTTCAACACTTGACTTCGCTTACGAGGTTGGCTATATGGTTTTTCAAAGGAGTGGAGACTTTACCAGAGTGGCTGGGCAACCTTGCATCTCTCGTGGAGCTGAGAATTCAGGATTGTGAGATTCTCAAGTATCTACCTTCTCTCGAAGCAATGCAACGCCTCACCAAATTACAGCGTCTAGAAGTTATTGATTGTCCACTTCTAGAAGAAAGATGCACCGAGGACAGCGGTGAAGAATGGCCCAAGATTTCTCACATTCAAAATATCAGAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

1168

Amino Acids

132.92

Weight (kDa)

6.53

Isoelectric Point (pI)

44.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 14 - 100 4.1e-18 Rx N-terminal domain
NB-ARC PF00931 174 - 345 2e-34 NB-ARC domain
NACHT PF05729 196 - 336 7.1e-07 NACHT domain
WHD_DRP PF23559 437 - 507 1.6e-22 Disease resistance protein Winged helix domain
LRR_14 PF23598 547 - 807 4.2e-30 Leucine-rich repeat region
LRR_8 PF13855 567 - 623 6.7e-07 Leucine rich repeat
LRR_R13L1-DRL21 PF25019 674 - 800 2.4e-31 R13L1/DRL21 LRRs
LRR_14 PF23598 1020 - 1164 8.4e-08 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 1078 - 1134 5.5e-07 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000029)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13530 FvH4_4g18270 FvH4_6g12200 FvH4_6g12460 FvH4_6g12461 FvH4_6g13450 FvH4_6g15090 FvH4_6g15220 FvH4_6g15230 FvH4_6g15250 FvH4_6g15251 FvH4_6g15340 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47980 FvH4_6g47980 FvH4_6g47980 FvH4_6g48170 FvH4_6g48310 FvH4_6g48310 FvH4_6g48850 FvH4_6g48881 FvH4_7g11830
malus_domestica MD02G1059900.v1.1 MD02G1069600.v1.1 MD02G1069700.v1.1 MD02G1070100.v1.1 MD02G1070200.v1.1 MD02G1070300.v1.1 MD02G1070800.v1.1 MD02G1070900.v1.1 MD02G1071200.v1.1 MD02G1071400.v1.1 MD02G1071900.v1.1 MD02G1075200.v1.1 MD03G1048000.v1.1 MD03G1049100.v1.1 MD03G1049200.v1.1 MD03G1052500.v1.1 MD03G1054100.v1.1 MD03G1054300.v1.1 MD03G1054400.v1.1 MD04G1113400.v1.1 MD04G1211100.v1.1 MD04G1211200.v1.1 MD05G1174900.v1.1 MD05G1175000.v1.1 MD05G1175900.v1.1 MD05G1243400.v1.1 MD07G1031500.v1.1 MD07G1031600.v1.1 MD07G1032500.v1.1 MD11G1046800.v1.1 MD11G1046900.v1.1 MD11G1047000.v1.1 MD11G1050400.v1.1 MD11G1050600.v1.1 MD11G1050800.v1.1 MD11G1051100.v1.1 MD11G1051600.v1.1 MD11G1051700.v1.1 MD11G1054600.v1.1 MD11G1055600.v1.1 MD11G1055700.v1.1 MD11G1055800.v1.1 MD11G1056000.v1.1 MD12G1126600.v1.1 MD12G1126700.v1.1 MD12G1126800.v1.1 MD12G1127300.v1.1 MD12G1127600.v1.1 MD12G1127900.v1.1 MD12G1128100.v1.1 MD12G1128300.v1.1 MD15G1261500.v1.1
prunus_persica Prupe.1G010700_v2.0.a1 Prupe.1G010800_v2.0.a1 Prupe.1G011000_v2.0.a1 Prupe.1G159600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163700_v2.0.a1 Prupe.1G163700_v2.0.a1 Prupe.1G163800_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G235500_v2.0.a1 Prupe.2G067400_v2.0.a1 Prupe.2G067500_v2.0.a1 Prupe.2G111700_v2.0.a1 Prupe.2G111800_v2.0.a1 Prupe.3G012000_v2.0.a1 Prupe.6G243400_v2.0.a1 Prupe.6G243500_v2.0.a1 Prupe.6G243600_v2.0.a1 Prupe.6G243700_v2.0.a1 Prupe.6G243800_v2.0.a1 Prupe.6G243900_v2.0.a1
pyrus_communis pycom02g04860 pycom02g04880 pycom02g04890 pycom02g05510 pycom02g05520 pycom02g05600 pycom02g05930 pycom02g06000 pycom02g06010 pycom03g03800 pycom03g03860 pycom03g03880 pycom03g03890 pycom03g03910 pycom03g03920 pycom03g04200 pycom03g04290 pycom03g04300 pycom03g04310 pycom03g04320 pycom03g09260 pycom04g10150 pycom04g10160 pycom04g10170 pycom05g16180 pycom05g16190 pycom05g16240 pycom05g21980 pycom05g21990 pycom07g02280 pycom11g03800 pycom11g03810 pycom11g04080 pycom11g04140 pycom11g04150 pycom11g04160 pycom11g04570 pycom11g04580 pycom11g04590 pycom11g04610 pycom12g12470 pycom12g12490 pycom13g22050
rosa_chinensis RchiOBHm_Chr1g0317761 RchiOBHm_Chr1g0317821 RchiOBHm_Chr1g0317831 RchiOBHm_Chr1g0317871 RchiOBHm_Chr1g0350501 RchiOBHm_Chr2g0107631 RchiOBHm_Chr3g0452091 RchiOBHm_Chr3g0464001 RchiOBHm_Chr3g0464281 RchiOBHm_Chr3g0466331 RchiOBHm_Chr3g0467341 RchiOBHm_Chr3g0467381 RchiOBHm_Chr3g0467731 RchiOBHm_Chr3g0468291 RchiOBHm_Chr3g0468321 RchiOBHm_Chr3g0468341 RchiOBHm_Chr3g0468391 RchiOBHm_Chr3g0468411 RchiOBHm_Chr3g0468571 RchiOBHm_Chr3g0468591 RchiOBHm_Chr3g0490721 RchiOBHm_Chr3g0490751 RchiOBHm_Chr3g0490761 RchiOBHm_Chr3g0490771 RchiOBHm_Chr3g0490951 RchiOBHm_Chr3g0491001 RchiOBHm_Chr3g0491011 RchiOBHm_Chr4g0412461 RchiOBHm_Chr4g0414161 RchiOBHm_Chr4g0414181 RchiOBHm_Chr4g0414191 RchiOBHm_Chr4g0414281 RchiOBHm_Chr4g0414441 RchiOBHm_Chr4g0414521 RchiOBHm_Chr4g0414531 RchiOBHm_Chr4g0417011 RchiOBHm_Chr4g0417021 RchiOBHm_Chr4g0417041 RchiOBHm_Chr4g0417071 RchiOBHm_Chr4g0417101 RchiOBHm_Chr4g0417531 RchiOBHm_Chr4g0417641 RchiOBHm_Chr4g0417651 RchiOBHm_Chr4g0417701 RchiOBHm_Chr4g0417731 RchiOBHm_Chr4g0417741 RchiOBHm_Chr4g0417781 RchiOBHm_Chr4g0418751 RchiOBHm_Chr4g0418791 RchiOBHm_Chr4g0418861 RchiOBHm_Chr4g0418881 RchiOBHm_Chr4g0418901 RchiOBHm_Chr4g0422451 RchiOBHm_Chr4g0422461 RchiOBHm_Chr4g0422471 RchiOBHm_Chr4g0422541 RchiOBHm_Chr4g0422561 RchiOBHm_Chr4g0422591 RchiOBHm_Chr4g0422651 RchiOBHm_Chr4g0422661 RchiOBHm_Chr5g0003251 RchiOBHm_Chr5g0003261 RchiOBHm_Chr5g0055871 RchiOBHm_Chr7g0204701 RchiOBHm_Chr7g0204741
rosa_laevigata RLG00000007607 RLG00000007932 RLG00000017606 RLG00000024418 RLG00000025629 RLG00000030586
rosa_multiflora Rmu_co7959167.1_g000001 Rmu_co8021330.1_g000001 Rmu_co8132128.1_g000001 Rmu_co8224744.1_g000001 Rmu_co8281865.1_g000001 Rmu_co8298487.1_g000001 Rmu_co8319035.1_g000001 Rmu_co8380035.1_g000001 Rmu_co8385371.1_g000001 Rmu_co8398173.1_g000001 Rmu_co8423363.1_g000001 Rmu_co8438275.1_g000001 Rmu_co8474729.1_g000001 Rmu_sc0000057.1_g000008 Rmu_sc0000350.1_g000023 Rmu_sc0000480.1_g000005 Rmu_sc0000654.1_g000021 Rmu_sc0000654.1_g000029 Rmu_sc0000654.1_g000032 Rmu_sc0000654.1_g000041 Rmu_sc0000654.1_g000045 Rmu_sc0000772.1_g000002 Rmu_sc0000772.1_g000041 Rmu_sc0000808.1_g000040 Rmu_sc0000830.1_g000062 Rmu_sc0000830.1_g000065 Rmu_sc0000830.1_g000072 Rmu_sc0000830.1_g000073 Rmu_sc0000935.1_g000020 Rmu_sc0000935.1_g000024 Rmu_sc0000935.1_g000026 Rmu_sc0000935.1_g000027 Rmu_sc0000935.1_g000031 Rmu_sc0000935.1_g000033 Rmu_sc0000962.1_g000033 Rmu_sc0000962.1_g000036 Rmu_sc0000962.1_g000063 Rmu_sc0000962.1_g000064 Rmu_sc0000962.1_g000065 Rmu_sc0001029.1_g000007 Rmu_sc0001063.1_g000014 Rmu_sc0001149.1_g000010 Rmu_sc0001149.1_g000011 Rmu_sc0001358.1_g000009 Rmu_sc0001448.1_g000003 Rmu_sc0001448.1_g000004 Rmu_sc0001729.1_g000005 Rmu_sc0001729.1_g000007 Rmu_sc0001729.1_g000020 Rmu_sc0001729.1_g000023 Rmu_sc0001793.1_g000015 Rmu_sc0002494.1_g000018 Rmu_sc0002494.1_g000019 Rmu_sc0002604.1_g000022 Rmu_sc0002922.1_g000011 Rmu_sc0003008.1_g000009 Rmu_sc0003221.1_g000061 Rmu_sc0003221.1_g000062 Rmu_sc0003459.1_g000014 Rmu_sc0003480.1_g000015 Rmu_sc0003541.1_g000016 Rmu_sc0003541.1_g000020 Rmu_sc0004035.1_g000001 Rmu_sc0004035.1_g000005 Rmu_sc0004035.1_g000011 Rmu_sc0004142.1_g000004 Rmu_sc0004142.1_g000010 Rmu_sc0004353.1_g000008 Rmu_sc0004616.1_g000009 Rmu_sc0004616.1_g000010 Rmu_sc0005231.1_g000004 Rmu_sc0006380.1_g000025 Rmu_sc0006492.1_g000010 Rmu_sc0006895.1_g000001 Rmu_sc0006895.1_g000002 Rmu_sc0006895.1_g000005 Rmu_sc0007034.1_g000004 Rmu_sc0007104.1_g000006 Rmu_sc0008990.1_g000003 Rmu_sc0008990.1_g000004 Rmu_sc0009106.1_g000003 Rmu_sc0009516.1_g000002 Rmu_sc0009516.1_g000003 Rmu_sc0009516.1_g000004 Rmu_sc0009516.1_g000005 Rmu_sc0009645.1_g000001 Rmu_sc0010274.1_g000001 Rmu_sc0010274.1_g000002 Rmu_sc0010419.1_g000003 Rmu_sc0010917.1_g000017 Rmu_sc0011213.1_g000001 Rmu_sc0011228.1_g000007 Rmu_sc0011538.1_g000011 Rmu_sc0011538.1_g000014 Rmu_sc0011538.1_g000015 Rmu_sc0012211.1_g000006 Rmu_sc0012351.1_g000003 Rmu_sc0012351.1_g000005 Rmu_sc0012915.1_g000002 Rmu_sc0013088.1_g000001 Rmu_sc0013459.1_g000001 Rmu_sc0013765.1_g000004 Rmu_sc0013765.1_g000005 Rmu_sc0014003.1_g000012 Rmu_sc0014003.1_g000014 Rmu_sc0014698.1_g000001 Rmu_sc0015740.1_g000001 Rmu_sc0016429.1_g000003 Rmu_sc0018885.1_g000001 Rmu_sc0020345.1_g000001 Rmu_sc0027791.1_g000001 Rmu_sc0037325.1_g000001 Rmu_ssc0000010.1_g000024 Rmu_ssc0000010.1_g000025 Rmu_ssc0000083.1_g000021 Rmu_ssc0000340.1_g000002 Rmu_ssc0000386.1_g000002 Rmu_ssc0000386.1_g000024 Rmu_ssc0000386.1_g000025 Rmu_ssc0000386.1_g000034 Rmu_ssc0000386.1_g000037 Rmu_ssc0000477.1_g000001
rosa_roxburghii Rroxscaffold_161G00448010 Rroxscaffold_164G00436080 Rroxscaffold_1G00024500 Rroxscaffold_2G00124290 Rroxscaffold_3G00222940 Rroxscaffold_3G00227440 Rroxscaffold_4G00304810 Rroxscaffold_4G00330180 Rroxscaffold_4G00330200 Rroxscaffold_5G00356620 Rroxscaffold_5G00358170 Rroxscaffold_5G00360880 Rroxscaffold_5G00361220 Rroxscaffold_5G00361950 Rroxscaffold_5G00361960 Rroxscaffold_5G00361990 Rroxscaffold_5G00362370 Rroxscaffold_5G00364540 Rroxscaffold_5G00364550 Rroxscaffold_5G00364580 Rroxscaffold_5G00364600 Rroxscaffold_6G00393290 Rroxscaffold_6G00412680 Rroxscaffold_6G00412790 Rroxscaffold_6G00413470 Rroxscaffold_6G00413720 Rroxscaffold_6G00416070 Rroxscaffold_7G00205400
rosa_rugosa Rorug01G0017300 Rorug01G0017400 Rorug01G0018000 Rorug01G0018100 Rorug01G0211500 Rorug02G0638200 Rorug03G0070000 Rorug03G0071200 Rorug03G0081000 Rorug03G0086500 Rorug03G0089300 Rorug03G0095300 Rorug03G0096000 Rorug03G0096000 Rorug04G0055000 Rorug04G0078300 Rorug04G0104100.1 Rorug04G0113800 Rorug04G0126700 Rorug04G0128000 Rorug04G0145900 Rorug04G0148700 Rorug04G0149100 Rorug04G0149100 Rorug04G0149200 Rorug04G0149300 Rorug04G0154900 Rorug04G0180400 Rorug04G0180500 Rorug04G0180700 Rorug04G0180800 Rorug04G0401500 Rorug04G0402100 Rorug05G0288600 Rorug05G0334100 Rorug07G0176400
rosa_samantha Rh1DG043200 Rh1DG043500 Rh1DG043900 Rh1DG222800 Rh3CG039900 Rh3CG156200 Rh3CG328500 Rh3CG328800 Rh3DG165000 Rh4AG208400 Rh4BG205600 Rh4BG213900 Rh4BG243900 Rh4CG198800 Rh4DG168600 Rh4DG180100 Rh4DG180300 Rh4DG180600 Rh4DG181200 Rh4DG181600 Rh4DG181700 Rh4DG183700 Rh4DG184000 Rh4DG184400 Rh4DG184700 Rh4DG206100 Rh4DG206200 Rh4DG206300 Rh4DG215600 Rh4DG238700 Rh4DG238900 Rh5DG390300
rosa_wichuraiana Rw0G005050 Rw0G009260 Rw0G009280 Rw0G015600 Rw0G023570 Rw1G002140 Rw1G002170 Rw1G002210 Rw1G002240 Rw1G019500 Rw2G015490 Rw3G003020 Rw3G010900 Rw3G012030 Rw3G012790 Rw3G013050 Rw3G013540 Rw3G013640 Rw3G013650 Rw3G026050 Rw3G026070 Rw4G015740 Rw4G015790 Rw4G015910 Rw4G015930 Rw4G015950 Rw4G017900 Rw4G017930 Rw4G018440 Rw4G018450 Rw4G018530 Rw4G020720 Rw4G020760 Rw5G019250 Rw5G034370 Rw7G018700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1019
Acc65I GGTACC 1 cut(s) 1111
AccB1I GGYRCC 3 cut(s) 415, 1111, 2331
AccB7I CCANNNNNTGG 1 cut(s) 2621
AccBSI CCGCTC 1 cut(s) 2850
AccI GTMKAC 2 cut(s) 1591, 3064
AccII CGCG 1 cut(s) 2661
AccIII TCCGGA 2 cut(s) 1974, 2802
AclI AACGTT 1 cut(s) 2133
AclWI GGATC 4 cut(s) 171, 585, 1232, 1333
AcoI YGGCCR 3 cut(s) 591, 2359, 2701
AcsI RAATTY 9 cut(s) 898, 1036, 1744, 1937, 2427, 2508, 2634, 3333, 3498
AcuI CTGAAG 4 cut(s) 249, 1230, 1781, 2069
AfaI GTAC 6 cut(s) 315, 644, 1113, 1490, 2199, 2963
AfeI AGCGCT 2 cut(s) 157, 1544
AfiI CCNNNNNNNGG 4 cut(s) 2050, 2587, 2621, 2950
AflII CTTAAG 3 cut(s) 404, 1708, 2236
AflIII ACRYGT 3 cut(s) 1576, 1614, 2884
AjnI CCWGG 1 cut(s) 1662
AjuI GAANNNNNNNTTGG 6 cut(s) 495, 527, 2340, 2372, 2724, 2756
AloI GAACNNNNNNTCC 2 cut(s) 1667, 1699
Alw21I GWGCWC 2 cut(s) 21, 834
Alw26I GTCTC 8 cut(s) 163, 191, 1179, 2158, 2465, 3184, 3219, 3278
AlwI GGATC 4 cut(s) 171, 585, 1232, 1333
AlwNI CAGNNNCTG 1 cut(s) 2734
Aor13HI TCCGGA 2 cut(s) 1974, 2802
Aor51HI AGCGCT 2 cut(s) 157, 1544
AoxI GGCC 7 cut(s) 591, 2359, 2701, 2770, 2788, 3200, 3467
ApeKI GCWGC 7 cut(s) 5, 29, 153, 158, 289, 915, 2745
ApoI RAATTY 9 cut(s) 898, 1036, 1744, 1937, 2427, 2508, 2634, 3333, 3498
Asp700I GAANNNNTTC 1 cut(s) 1679
Asp718I GGTACC 1 cut(s) 1111
AspLEI GCGC 5 cut(s) 158, 367, 941, 1545, 1644
AspS9I GGNCC 5 cut(s) 1011, 1666, 2788, 3119, 3468
AsuC2I CCSGG 1 cut(s) 909
AsuHPI GGTGA 5 cut(s) 512, 919, 2270, 3382, 3470
AsuII TTCGAA 2 cut(s) 1317, 2632
AvaII GGWCC 3 cut(s) 1011, 1666, 3119
BalI TGGCCA 3 cut(s) 593, 2361, 2703
BanI GGYRCC 3 cut(s) 415, 1111, 2331
BanII GRGCYC 1 cut(s) 1151
BauI CACGAG 3 cut(s) 2460, 2925, 3320
BbsI GAAGAC 3 cut(s) 237, 528, 626
Bbv12I GWGCWC 2 cut(s) 21, 834
BbvCI CCTCAGC 1 cut(s) 33
BbvI GCAGC 7 cut(s) 16, 17, 145, 165, 276, 902, 2757
BceAI ACGGC 1 cut(s) 2505
BciT130I CCWGG 1 cut(s) 1664
BciVI GTATCC 3 cut(s) 709, 1402, 2662
BclI TGATCA 2 cut(s) 552, 1899
BcnI CCSGG 1 cut(s) 909
BcoDI GTCTC 8 cut(s) 163, 191, 1179, 2158, 2465, 3184, 3219, 3278
BfmI CTRYAG 2 cut(s) 2641, 2726
BfoI RGCGCY 3 cut(s) 159, 942, 1546
BfrI CTTAAG 3 cut(s) 404, 1708, 2236
BfuI GTATCC 3 cut(s) 709, 1402, 2662
BglI GCCNNNNNGGC 1 cut(s) 1146
BisI GCNGC 8 cut(s) 6, 30, 66, 154, 159, 290, 916, 2746
BlsI GCNGC 8 cut(s) 7, 31, 67, 155, 160, 291, 917, 2747
Bme1390I CCNGG 2 cut(s) 909, 1664
Bme18I GGWCC 3 cut(s) 1011, 1666, 3119
BmgT120I GGNCC 5 cut(s) 1011, 1666, 2788, 3119, 3468
BmiI GGNNCC 6 cut(s) 95, 417, 1113, 1263, 1668, 2333
BmrFI CCNGG 2 cut(s) 909, 1664
BmrI ACTGGG 3 cut(s) 623, 1154, 2337
BmsI GCATC 7 cut(s) 766, 1051, 1878, 1921, 2885, 3323, 3431
BmuI ACTGGG 3 cut(s) 623, 1154, 2337
BoxI GACNNNNGTC 3 cut(s) 203, 2477, 2603
BpiI GAAGAC 3 cut(s) 237, 528, 626
BpmI CTGGAG 3 cut(s) 128, 1280, 1352
Bpu10I CCTNAGC 2 cut(s) 33, 3204
Bpu14I TTCGAA 2 cut(s) 1317, 2632
BpuEI CTTGAG 8 cut(s) 1135, 1341, 1789, 1927, 2894, 3053, 3194, 3338
BpuMI CCSGG 1 cut(s) 909
BsaAI YACGTR 1 cut(s) 1586
BsaI GGTCTC 1 cut(s) 2158
BsaJI CCNNGG 6 cut(s) 48, 1116, 1812, 1880, 2521, 3447
BsaWI WCCGGW 2 cut(s) 1974, 2802
BsaXI ACNNNNNCTCC 4 cut(s) 1667, 1697, 2916, 2946
Bsc4I CCNNNNNNNGG 4 cut(s) 2050, 2587, 2621, 2950
Bse1I ACTGG 5 cut(s) 111, 618, 1149, 1417, 2332
Bse3DI GCAATG 5 cut(s) 779, 1704, 1844, 2713, 3384
BseAI TCCGGA 2 cut(s) 1974, 2802
BseBI CCWGG 1 cut(s) 1664
BseDI CCNNGG 6 cut(s) 48, 1116, 1812, 1880, 2521, 3447
BseGI GGATG 8 cut(s) 1356, 2095, 2283, 2544, 2777, 2900, 2936, 3095
BseLI CCNNNNNNNGG 4 cut(s) 2050, 2587, 2621, 2950
BseMI GCAATG 5 cut(s) 779, 1704, 1844, 2713, 3384
BseMII CTCAG 6 cut(s) 24, 130, 785, 969, 1086, 3320
BseNI ACTGG 5 cut(s) 111, 618, 1149, 1417, 2332
BseRI GAGGAG 5 cut(s) 815, 866, 1013, 2018, 2606
BseXI GCAGC 7 cut(s) 16, 17, 145, 165, 276, 902, 2757
BseYI CCCAGC 1 cut(s) 3301
BsgI GTGCAG 1 cut(s) 2848
Bsh1236I CGCG 1 cut(s) 2661
BshFI GGCC 7 cut(s) 593, 2361, 2703, 2772, 2790, 3202, 3469
BshNI GGYRCC 3 cut(s) 415, 1111, 2331
BsiHKAI GWGCWC 2 cut(s) 21, 834
BsiSI CCGG 4 cut(s) 909, 1943, 1975, 2803
BslFI GGGAC 4 cut(s) 1652, 1974, 2273, 2988
BslI CCNNNNNNNGG 4 cut(s) 2050, 2587, 2621, 2950
BsmAI GTCTC 8 cut(s) 163, 191, 1179, 2158, 2465, 3184, 3219, 3278
BsmFI GGGAC 4 cut(s) 1652, 1974, 2273, 2988
BsmI GAATGC 1 cut(s) 1857
BsnI GGCC 7 cut(s) 593, 2361, 2703, 2772, 2790, 3202, 3469
Bso31I GGTCTC 1 cut(s) 2158
Bsp119I TTCGAA 2 cut(s) 1317, 2632
Bsp1286I GDGCHC 3 cut(s) 21, 834, 1151
Bsp13I TCCGGA 2 cut(s) 1974, 2802
Bsp1407I TGTACA 1 cut(s) 642
BspANI GGCC 7 cut(s) 593, 2361, 2703, 2772, 2790, 3202, 3469
BspCNI CTCAG 6 cut(s) 25, 129, 786, 970, 1087, 3321
BspEI TCCGGA 2 cut(s) 1974, 2802
BspFNI CGCG 1 cut(s) 2661
BspHI TCATGA 3 cut(s) 1227, 1396, 2185
BspLI GGNNCC 6 cut(s) 95, 417, 1113, 1263, 1668, 2333
BspPI GGATC 4 cut(s) 171, 585, 1232, 1333
BspT104I TTCGAA 2 cut(s) 1317, 2632
BspT107I GGYRCC 3 cut(s) 415, 1111, 2331
BspTI CTTAAG 3 cut(s) 404, 1708, 2236
BspTNI GGTCTC 1 cut(s) 2158
BsrBI CCGCTC 1 cut(s) 2850
BsrDI GCAATG 5 cut(s) 779, 1704, 1844, 2713, 3384
BsrGI TGTACA 1 cut(s) 642
BsrI ACTGG 5 cut(s) 111, 618, 1149, 1417, 2332
BssECI CCNNGG 6 cut(s) 48, 1116, 1812, 1880, 2521, 3447
BssSI CACGAG 3 cut(s) 2460, 2925, 3320
BssT1I CCWWGG 4 cut(s) 48, 1116, 1812, 1880
Bst2BI CACGAG 3 cut(s) 2460, 2925, 3320
Bst2UI CCWGG 1 cut(s) 1664
Bst4CI ACNGT 5 cut(s) 123, 1384, 1630, 2370, 2650
Bst6I CTCTTC 6 cut(s) 299, 809, 1728, 2115, 3078, 3222
BstAFI CTTAAG 3 cut(s) 404, 1708, 2236
BstAUI TGTACA 1 cut(s) 642
BstBAI YACGTR 1 cut(s) 1586
BstBI TTCGAA 2 cut(s) 1317, 2632
BstC8I GCNNGC 2 cut(s) 1757, 1826
BstDSI CCRYGG 1 cut(s) 2521
BstF5I GGATG 8 cut(s) 1356, 2095, 2283, 2544, 2777, 2900, 2936, 3095
BstFNI CGCG 1 cut(s) 2661
BstH2I RGCGCY 3 cut(s) 159, 942, 1546
BstHHI GCGC 5 cut(s) 158, 367, 941, 1545, 1644
BstMAI GTCTC 8 cut(s) 163, 191, 1179, 2158, 2465, 3184, 3219, 3278
BstMWI GCNNNNNNNGC 3 cut(s) 233, 1146, 2108
BstNI CCWGG 1 cut(s) 1664
BstNSI RCATGY 3 cut(s) 1580, 1618, 2888
BstPAI GACNNNNGTC 3 cut(s) 203, 2477, 2603
BstSCI CCNGG 2 cut(s) 907, 1662
BstSFI CTRYAG 2 cut(s) 2641, 2726
BstUI CGCG 1 cut(s) 2661
BstV1I GCAGC 7 cut(s) 16, 17, 145, 165, 276, 902, 2757
BstV2I GAAGAC 3 cut(s) 237, 528, 626
BstX2I RGATCY 1 cut(s) 577
BstYI RGATCY 1 cut(s) 577
BsuI GTATCC 3 cut(s) 709, 1402, 2662
BsuRI GGCC 7 cut(s) 593, 2361, 2703, 2772, 2790, 3202, 3469
BtgI CCRYGG 1 cut(s) 2521
BtgZI GCGATG 1 cut(s) 1251
BtsCI GGATG 8 cut(s) 1356, 2095, 2283, 2544, 2777, 2900, 2936, 3095
BtsIMutI CAGTG 1 cut(s) 645
Cac8I GCNNGC 2 cut(s) 1757, 1826
CaiI CAGNNNCTG 1 cut(s) 2734
CciI TCATGA 3 cut(s) 1227, 1396, 2185
CfoI GCGC 5 cut(s) 158, 367, 941, 1545, 1644
Cfr13I GGNCC 5 cut(s) 1011, 1666, 2788, 3119, 3468
CseI GACGC 4 cut(s) 242, 533, 2462, 3392
CsiI ACCWGGT 1 cut(s) 1662
Csp6I GTAC 6 cut(s) 314, 643, 1112, 1489, 2198, 2962
CviQI GTAC 6 cut(s) 314, 643, 1112, 1489, 2198, 2962
DraI TTTAAA 1 cut(s) 1035
EaeI YGGCCR 3 cut(s) 591, 2359, 2701
Eam1104I CTCTTC 6 cut(s) 299, 809, 1728, 2115, 3078, 3222
EarI CTCTTC 6 cut(s) 299, 809, 1728, 2115, 3078, 3222
Eco130I CCWWGG 4 cut(s) 48, 1116, 1812, 1880
Eco24I GRGCYC 1 cut(s) 1151
Eco31I GGTCTC 1 cut(s) 2158
Eco32I GATATC 1 cut(s) 1775
Eco47I GGWCC 3 cut(s) 1011, 1666, 3119
Eco47III AGCGCT 2 cut(s) 157, 1544
Eco57I CTGAAG 4 cut(s) 249, 1230, 1781, 2069
EcoO109I RGGNCCY 3 cut(s) 1666, 2788, 3119
EcoRI GAATTC 3 cut(s) 898, 2634, 3333
EcoRII CCWGG 1 cut(s) 1662
EcoRV GATATC 1 cut(s) 1775
EcoT14I CCWWGG 4 cut(s) 48, 1116, 1812, 1880
EcoT22I ATGCAT 3 cut(s) 781, 2689, 2758
EcoT38I GRGCYC 1 cut(s) 1151
ErhI CCWWGG 4 cut(s) 48, 1116, 1812, 1880
FaqI GGGAC 4 cut(s) 1652, 1974, 2273, 2988
FauI CCCGC 2 cut(s) 1695, 2843
FbaI TGATCA 2 cut(s) 552, 1899
FblI GTMKAC 2 cut(s) 1591, 3064
Fnu4HI GCNGC 8 cut(s) 6, 30, 66, 154, 159, 290, 916, 2746
FokI GGATG 8 cut(s) 1363, 2102, 2290, 2551, 2764, 2907, 2923, 3082
FriOI GRGCYC 1 cut(s) 1151
Fsp4HI GCNGC 8 cut(s) 6, 30, 66, 154, 159, 290, 916, 2746
GlaI GCGC 5 cut(s) 157, 366, 940, 1544, 1643
GluI GCNGC 8 cut(s) 6, 30, 66, 154, 159, 290, 916, 2746
GsaI CCCAGC 1 cut(s) 3305
GsuI CTGGAG 3 cut(s) 128, 1280, 1352
HaeII RGCGCY 3 cut(s) 159, 942, 1546
HaeIII GGCC 7 cut(s) 593, 2361, 2703, 2772, 2790, 3202, 3469
HapII CCGG 4 cut(s) 909, 1943, 1975, 2803
HgaI GACGC 4 cut(s) 242, 533, 2462, 3392
HhaI GCGC 5 cut(s) 158, 367, 941, 1545, 1644
Hin6I GCGC 5 cut(s) 156, 365, 939, 1543, 1642
HinP1I GCGC 5 cut(s) 156, 365, 939, 1543, 1642
HincII GTYRAC 5 cut(s) 951, 1592, 2061, 2598, 3042
HindII GTYRAC 5 cut(s) 951, 1592, 2061, 2598, 3042
HindIII AAGCTT 1 cut(s) 1874
HpaI GTTAAC 1 cut(s) 2061
HpaII CCGG 4 cut(s) 909, 1943, 1975, 2803
HphI GGTGA 5 cut(s) 512, 919, 2270, 3382, 3470
Hpy99I CGWCG 4 cut(s) 550, 2456, 2560, 2563
HpyCH4III ACNGT 5 cut(s) 123, 1384, 1630, 2370, 2650
HpyCH4IV ACGT 3 cut(s) 548, 1585, 2133
HpyF10VI GCNNNNNNNGC 3 cut(s) 233, 1146, 2108
HpySE526I ACGT 3 cut(s) 548, 1585, 2133
HspAI GCGC 5 cut(s) 156, 365, 939, 1543, 1642
Kpn2I TCCGGA 2 cut(s) 1974, 2802
KpnI GGTACC 1 cut(s) 1115
Ksp22I TGATCA 2 cut(s) 552, 1899
KspAI GTTAAC 1 cut(s) 2061
LmnI GCTCC 5 cut(s) 286, 400, 563, 1261, 3325
Lsp1109I GCAGC 7 cut(s) 16, 17, 145, 165, 276, 902, 2757
LweI GCATC 7 cut(s) 766, 1051, 1878, 1921, 2885, 3323, 3431
MabI ACCWGGT 1 cut(s) 1662
MaeII ACGT 3 cut(s) 548, 1585, 2133
MaeIII GTNAC 5 cut(s) 529, 541, 925, 1624, 3104
MbiI CCGCTC 1 cut(s) 2850
MfeI CAATTG 2 cut(s) 1818, 2608
MflI RGATCY 1 cut(s) 577
MhlI GDGCHC 3 cut(s) 21, 834, 1151
MlsI TGGCCA 3 cut(s) 593, 2361, 2703
MluNI TGGCCA 3 cut(s) 593, 2361, 2703
MlyI GAGTC 5 cut(s) 619, 2202, 2295, 2937, 3134
MmeI TCCRAC 6 cut(s) 156, 298, 493, 585, 2208, 2236
Mox20I TGGCCA 3 cut(s) 593, 2361, 2703
Mph1103I ATGCAT 3 cut(s) 781, 2689, 2758
MroI TCCGGA 2 cut(s) 1974, 2802
MroXI GAANNNNTTC 1 cut(s) 1679
MscI TGGCCA 3 cut(s) 593, 2361, 2703
MslI CAYNNNNRTG 1 cut(s) 1917
Msp20I TGGCCA 3 cut(s) 593, 2361, 2703
MspA1I CMGCKG 3 cut(s) 8, 2748, 3456
MspCI CTTAAG 3 cut(s) 404, 1708, 2236
MspI CCGG 4 cut(s) 909, 1943, 1975, 2803
MspR9I CCNGG 2 cut(s) 909, 1664
MunI CAATTG 2 cut(s) 1818, 2608
Mva1269I GAATGC 1 cut(s) 1857
MvaI CCWGG 1 cut(s) 1664
MvnI CGCG 1 cut(s) 2661
MwoI GCNNNNNNNGC 3 cut(s) 233, 1146, 2108
NciI CCSGG 1 cut(s) 909
NlaIV GGNNCC 6 cut(s) 95, 417, 1113, 1263, 1668, 2333
NmuCI GTSAC 3 cut(s) 529, 925, 3104
NsiI ATGCAT 3 cut(s) 781, 2689, 2758
NspI RCATGY 3 cut(s) 1580, 1618, 2888
NspV TTCGAA 2 cut(s) 1317, 2632
PagI TCATGA 3 cut(s) 1227, 1396, 2185
PciI ACATGT 3 cut(s) 1576, 1614, 2884
PcsI WCGNNNNNNNCGW 2 cut(s) 466, 2998
PctI GAATGC 1 cut(s) 1857
PdmI GAANNNNTTC 1 cut(s) 1679
PflFI GACNNNGTC 2 cut(s) 1664, 1981
PflMI CCANNNNNTGG 1 cut(s) 2621
PfoI TCCNGGA 1 cut(s) 907
PkrI GCNGC 8 cut(s) 7, 31, 67, 155, 160, 291, 917, 2747
PleI GAGTC 5 cut(s) 619, 2202, 2294, 2936, 3134
PpsI GAGTC 5 cut(s) 619, 2202, 2294, 2936, 3134
Ppu21I YACGTR 1 cut(s) 1586
PpuMI RGGWCCY 2 cut(s) 1666, 3119
PscI ACATGT 3 cut(s) 1576, 1614, 2884
PshAI GACNNNNGTC 3 cut(s) 203, 2477, 2603
PsiI TTATAA 1 cut(s) 1019
Psp1406I AACGTT 1 cut(s) 2133
Psp5II RGGWCCY 2 cut(s) 1666, 3119
Psp6I CCWGG 1 cut(s) 1662
PspFI CCCAGC 1 cut(s) 3301
PspGI CCWGG 1 cut(s) 1662
PspN4I GGNNCC 6 cut(s) 95, 417, 1113, 1263, 1668, 2333
PspPI GGNCC 5 cut(s) 1011, 1666, 2788, 3119, 3468
PspPPI RGGWCCY 2 cut(s) 1666, 3119
PstNI CAGNNNCTG 1 cut(s) 2734
PsuI RGATCY 1 cut(s) 577
PsyI GACNNNGTC 2 cut(s) 1664, 1981
PvuII CAGCTG 2 cut(s) 8, 2748
RsaI GTAC 6 cut(s) 315, 644, 1113, 1490, 2199, 2963
RsaNI GTAC 6 cut(s) 314, 643, 1112, 1489, 2198, 2962
RseI CAYNNNNRTG 1 cut(s) 1917
SalI GTCGAC 1 cut(s) 1590
SatI GCNGC 8 cut(s) 6, 30, 66, 154, 159, 290, 916, 2746
Sau96I GGNCC 5 cut(s) 1011, 1666, 2788, 3119, 3468
SchI GAGTC 5 cut(s) 619, 2202, 2295, 2937, 3134
ScrFI CCNGG 2 cut(s) 909, 1664
SduI GDGCHC 3 cut(s) 21, 834, 1151
SexAI ACCWGGT 1 cut(s) 1662
SfaNI GCATC 7 cut(s) 766, 1051, 1878, 1921, 2885, 3323, 3431
SfcI CTRYAG 2 cut(s) 2641, 2726
SfuI TTCGAA 2 cut(s) 1317, 2632
SinI GGWCC 3 cut(s) 1011, 1666, 3119
SmiMI CAYNNNNRTG 1 cut(s) 1917
SspI AATATT 1 cut(s) 1424
StyD4I CCNGG 2 cut(s) 907, 1662
StyI CCWWGG 4 cut(s) 48, 1116, 1812, 1880
TaaI ACNGT 5 cut(s) 123, 1384, 1630, 2370, 2650
TaiI ACGT 3 cut(s) 551, 1588, 2136
TatI WGTACW 4 cut(s) 642, 1488, 2197, 2961
TauI GCSGC 1 cut(s) 68
TscAI CASTG 1 cut(s) 645
TseFI GTSAC 3 cut(s) 529, 925, 3104
TseI GCWGC 7 cut(s) 5, 29, 153, 158, 289, 915, 2745
Tsp45I GTSAC 3 cut(s) 529, 925, 3104
TspGWI ACGGA 3 cut(s) 2933, 3074, 3092
TspRI CASTG 1 cut(s) 645
Tth111I GACNNNGTC 2 cut(s) 1664, 1981
Van91I CCANNNNNTGG 1 cut(s) 2621
Vha464I CTTAAG 3 cut(s) 404, 1708, 2236
VpaK11BI GGWCC 3 cut(s) 1011, 1666, 3119
XapI RAATTY 9 cut(s) 898, 1036, 1744, 1937, 2427, 2508, 2634, 3333, 3498
XbaI TCTAGA 3 cut(s) 1777, 3406, 3430
XceI RCATGY 3 cut(s) 1580, 1618, 2888
XcmI CCANNNNNNNNNTGG 2 cut(s) 601, 2071
XmiI GTMKAC 2 cut(s) 1591, 3064
XmnI GAANNNNTTC 1 cut(s) 1679
Zsp2I ATGCAT 3 cut(s) 781, 2689, 2758
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.