RchiOBHm_Chr3g0467381

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
13525813 .. 13534630
8818 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43335

Sequence Viewer

Length: 3816 bp
ATGGCTGAGTTTCTTACTTTTGCTGCCCAGGAAATGCTGACCAAAGTGGCTTCACTTGCCACTCAAGAGTTCACTCTTTTATGGGGTTTCAAAGGAGAATTAGCAAATCTGCGTGAGTCGCTGCTCTTTCTTGAAGCTGTGCTACGAGATGCTGAACAGAAGCGGCAAGATCAGGGCGAGGCTGTGAAGCTCTGGTTGGAGAAGCTTGAAGACATAGCTCATCTTGCCGATGATGTGTTGGATGACTACGGATATGAGCTTCTTCGGCGTAAGGTGGAACTGCGAAACCAAATGAAGAAAAAGGTGCAAAACTTTTTTTCTCTCTCCAATCCTATCTTTTTTCGTGCTAAAATGGCACATAAAATTCAGAAAATCAACACATCTTTGGAGGATTTAGGTAAAAGGGCAAGTGGTTTTGGATTTGTTGCTAGGCCTTCCATAGACGCAACAAGCTCCTATGATAGAAGAATTGATAGGGAAACCTACTCTGAGTTCAAAAAAGATGAAAGCAATATCATTGGAAGGAAGGATGTTGTGGAAGATATAGTGAAAGCCTTGACCAACTCTAACAACAGTCAGGAAAATGATCTTTCAGTTCTAGTTATTGTGGGAATGGGAGGACTTGGGAAGACCACTTTAGCTAAATCAATATATCATGATGATAAGATAAAGCAACACTTCCAAGAAAAGATGTGGGTTTGTGTGTCTATCCCTTTTGAAGTCAACTCGATTTTAAGGGGGATCTTGGAGTCTGTTAAACCTGAACATGCTGCTGTACAAACTAGAGATGCAATATGTAGAATCCTCAAAAAGGAATTGAAAGGGAAAAAGTATCTTCTTGTGCTTGATGATGTTTGGAACGAAGATGCTCAAAAATGGGAAGAACTGATCAGTTGTTTGGTAAACGTCAATAATACCCAAGGAAGCAGCATCCTTATCACTACCCGTAGCGACAAAGTTGCAAAAATGTTGGAGACCCTTCCTAGGTGTAATTTAGAAAAACTATCAGATGATGAATGTTGGCTTATATTGAAGGACATAGCAATTCTAGTTAGCAGTGCTTCTATTGCTGGAGATCAAGAAAAAATTGGAAGGGAGATTGCTAAAAAGTGCAGAGGCGTGCCATTAGTAGCAAAGGTGTTGGGAAATATGATGCGTTCTAAAAGGTGTGATGAATGGCAATCGATTGTGGATAATGGTATATGGGATTTACCGGAGGAAGAAACAAGAATATTGACGATTTTGAAATTGAGTTTTGATGAATTGAAATCTCCATCGCTGAAACAATGTTTTGCATATTGCTCCATGTTCATCAAAGATTTTGAATTTGAAAAGTACGACTTGATCCAACTTTGGATGGCTCAAGGATGGCTTCACCCTTCTCCCAACCAAAATAATCTAGAGATGGAAGACAAAGGTAATGAATATTTTAATATTCTGTTACATAACTCATTTTTTCAAAATGTGAAAAGGGATCACCATGGTGATATAATCACGTGCCAAATGCATGATCTCGTTCATGATCTTGCTGAACGTGTTTCAAAGTCAAAGTACTTGCGCTCCGCATTTTCAAATGGAGCAGTCCTTTCAGACAACTCACCTGGATTTAAAGCTCTACGTATTTTAAAGTTACACAATGCAGACGTTCAGGAGTTGCCAGATTCAATTGGAAAGTTGAGACACTTGAGGTATCTAAATGTCATGTATACAAAGATCAAAGCATTTCCCAAATCTTTGGGTCAGCTTTATAACCTTCAGACATTTAAAATGCCTTCTTACCTTCAAGAGTTCCCGAAGCAAATTGCAAATTTGATCAACCTACGGCATATTTATTTTGATGAAACTGTGGAAGTTCCAGCTGGGGTATTGGGAAGATTGACTAATCTCCGATCATTACCTCCTGTAAAGATAGGTAAGGAGACAGGAACTGGAATTGGGGAATTAGGTGGCTTAAACCACCTGAAAGACCACTTAAGTATTCGTAATCTGGAACATGTAAGAGATAAAGAAGAAGCAGAGAAAGCAAATTTAGTGGAGAAGAAACATCTACGCAAGTTATACCTCGGATGGACGCTTAGGAGGCCGAGCAACGGTGCTTACAGTGACGAAGTTGTACTTGAAGTCTTGCGACCGCATTCTAATCTGGAATTTTTGTGGATATCCGGCTTCATGGGTGTTAAATTTCCATCATGGTTATCGCTATCCAACAACTTAAAAGAGATTGGATTATCCAACTGCAACCAATGCGAAGGAGTCACAGTACTTGGCCATCTGCCCAATCTTGTACGTTTGGATTTGAGCTGGATGCAGAACCTCAGGTGTTTGGGAAATGAGTTTTATGGTTATGATCCGGTTTCTGATGATACAAAGGTTTTGTTTCCTGCATTGAAAACATTAGATATTGGGTGGGCGGAAAACCTAATTGAATGGATGGAAATGCCAACGGAAAGAGTGACGGTGTTTCCTTGCCTTGAGAATTTGGGCTTGTCCTTTTGCGACCAATTGAGAAGTGCTCCCAGTCATTTTCCATCTCTGAAAAGTTTGCGGATCATAGGCATGAATAACGGAGGCATTCCAATAGCAAGTATTCTAAGCAATAGTCTGACCACTCTCACTTCTCTACATATAAGCATTGTAAAGGGACTTGCTTGTCTGCCGGAAAGGTTGTTAGAAAACAACCAGAATCTTTCATGTTTGTGTATATCCTATTGTGAGGAGTTGACTTGTATTGCTCCGCCCCATTCACAAGGGTATGAGCACTGCCGCCGCGCATCTCTTCAGGAACTGAGAATTAGTGGGTGTCCTAAGCTGCGGTGTTTGCGTGATTATGGGCTATTATCTCTTGAGATGTTGGAGATAAGAGATTGCTCCAGTCTAGAGTCCATCCCAATCATCCCTGAGCACGGTGGTCTCCCATCTCTACGCCTATTGAGGATCGAAGAATGTCCTCAGTTATCCAGTCTACCTGATGGGCTACAATACTGCACATCTCTTCAATTTTTGCTAATAGGGAGCTGCCCAAAGATAACGTCCATTCCAATTCCATCTGAGGGCCTCCTATCCCTTGCTCGACTGTGGCTTCGGCAGTGTCCTGAGTTATCAAGCCTACCTAGTGGACTAGGCTGTTGCGCCTCTCTTGTTGATTTGTCAATAACAGAGTGCCCTAAGCTAACGTCCATTCCAATTGACACTCTCAGTACAACCCTCCGTCAATTGACAATCCAGGGATGTCAGAGTACACAAATTGATCTGCAATTTTGTGCCTCTCTTGGGGAGTTGAGAATAACAGGGTGTCCTAATCTAGAGGCTGTTCCAAGTTTAGACAAGCTCACATCCCTCCGTGAGTTGACGATTTATGATTGTTCCAGATTAACATGTCTACCCAGTGGGTTAGCAATGGCATCCCCACACGTATTCACCCGTCTCAAGGAATTGACACTTGGTCCGTTTTGGAATGAGCTGGATTCATTCCCTGCTTTTCAGGTTCTACCACAACTTGAAGAATTAAGTATCTACGGGTGGCCTAAGCTCAAGTCTCTGCCTGAACAAATTCAACACTTGATGTCTTTGACCCATTTGTGGATACAGGACTTTGAGGGAGTGGAGGCCATTCCAGATTGGTTGGGCAACCTTGCATCTCTTCACTGGTTAGTTATTTGCAGATGCGAGAATCTGATGTATCTACCTTCCGTCCAAGCTATGCACCGCCTCACCAAATTAGATTCGCTATACATCACCGAAAGTCCCCTTTTGAGCGAAAGATGCAGCGGCCCAGAATGGCCCAAGATTTCTCATATTCCAAACGTCCAAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

1271

Amino Acids

143.82

Weight (kDa)

6.13

Isoelectric Point (pI)

47.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 10 - 97 3.1e-21 Rx N-terminal domain
NB-ARC PF00931 176 - 348 2e-34 NB-ARC domain
NACHT PF05729 199 - 337 6.1e-07 NACHT domain
WHD_DRP PF23559 436 - 510 2.1e-23 Disease resistance protein Winged helix domain
LRR_14 PF23598 529 - 831 3.4e-29 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 645 - 769 7.5e-34 R13L1/DRL21 LRRs
LRR_R13L1-DRL21 PF25019 1182 - 1244 7.5e-06 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000029)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13530 FvH4_4g18270 FvH4_6g12200 FvH4_6g12460 FvH4_6g12461 FvH4_6g13450 FvH4_6g15090 FvH4_6g15220 FvH4_6g15230 FvH4_6g15250 FvH4_6g15251 FvH4_6g15340 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47980 FvH4_6g47980 FvH4_6g47980 FvH4_6g48170 FvH4_6g48310 FvH4_6g48310 FvH4_6g48850 FvH4_6g48881 FvH4_7g11830
malus_domestica MD02G1059900.v1.1 MD02G1069600.v1.1 MD02G1069700.v1.1 MD02G1070100.v1.1 MD02G1070200.v1.1 MD02G1070300.v1.1 MD02G1070800.v1.1 MD02G1070900.v1.1 MD02G1071200.v1.1 MD02G1071400.v1.1 MD02G1071900.v1.1 MD02G1075200.v1.1 MD03G1048000.v1.1 MD03G1049100.v1.1 MD03G1049200.v1.1 MD03G1052500.v1.1 MD03G1054100.v1.1 MD03G1054300.v1.1 MD03G1054400.v1.1 MD04G1113400.v1.1 MD04G1211100.v1.1 MD04G1211200.v1.1 MD05G1174900.v1.1 MD05G1175000.v1.1 MD05G1175900.v1.1 MD05G1243400.v1.1 MD07G1031500.v1.1 MD07G1031600.v1.1 MD07G1032500.v1.1 MD11G1046800.v1.1 MD11G1046900.v1.1 MD11G1047000.v1.1 MD11G1050400.v1.1 MD11G1050600.v1.1 MD11G1050800.v1.1 MD11G1051100.v1.1 MD11G1051600.v1.1 MD11G1051700.v1.1 MD11G1054600.v1.1 MD11G1055600.v1.1 MD11G1055700.v1.1 MD11G1055800.v1.1 MD11G1056000.v1.1 MD12G1126600.v1.1 MD12G1126700.v1.1 MD12G1126800.v1.1 MD12G1127300.v1.1 MD12G1127600.v1.1 MD12G1127900.v1.1 MD12G1128100.v1.1 MD12G1128300.v1.1 MD15G1261500.v1.1
prunus_persica Prupe.1G010700_v2.0.a1 Prupe.1G010800_v2.0.a1 Prupe.1G011000_v2.0.a1 Prupe.1G159600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163700_v2.0.a1 Prupe.1G163700_v2.0.a1 Prupe.1G163800_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G235500_v2.0.a1 Prupe.2G067400_v2.0.a1 Prupe.2G067500_v2.0.a1 Prupe.2G111700_v2.0.a1 Prupe.2G111800_v2.0.a1 Prupe.3G012000_v2.0.a1 Prupe.6G243400_v2.0.a1 Prupe.6G243500_v2.0.a1 Prupe.6G243600_v2.0.a1 Prupe.6G243700_v2.0.a1 Prupe.6G243800_v2.0.a1 Prupe.6G243900_v2.0.a1
pyrus_communis pycom02g04860 pycom02g04880 pycom02g04890 pycom02g05510 pycom02g05520 pycom02g05600 pycom02g05930 pycom02g06000 pycom02g06010 pycom03g03800 pycom03g03860 pycom03g03880 pycom03g03890 pycom03g03910 pycom03g03920 pycom03g04200 pycom03g04290 pycom03g04300 pycom03g04310 pycom03g04320 pycom03g09260 pycom04g10150 pycom04g10160 pycom04g10170 pycom05g16180 pycom05g16190 pycom05g16240 pycom05g21980 pycom05g21990 pycom07g02280 pycom11g03800 pycom11g03810 pycom11g04080 pycom11g04140 pycom11g04150 pycom11g04160 pycom11g04570 pycom11g04580 pycom11g04590 pycom11g04610 pycom12g12470 pycom12g12490 pycom13g22050
rosa_chinensis RchiOBHm_Chr1g0317761 RchiOBHm_Chr1g0317821 RchiOBHm_Chr1g0317831 RchiOBHm_Chr1g0317871 RchiOBHm_Chr1g0350501 RchiOBHm_Chr2g0107631 RchiOBHm_Chr3g0452091 RchiOBHm_Chr3g0464001 RchiOBHm_Chr3g0464281 RchiOBHm_Chr3g0466331 RchiOBHm_Chr3g0467341 RchiOBHm_Chr3g0467381 RchiOBHm_Chr3g0467731 RchiOBHm_Chr3g0468291 RchiOBHm_Chr3g0468321 RchiOBHm_Chr3g0468341 RchiOBHm_Chr3g0468391 RchiOBHm_Chr3g0468411 RchiOBHm_Chr3g0468571 RchiOBHm_Chr3g0468591 RchiOBHm_Chr3g0490721 RchiOBHm_Chr3g0490751 RchiOBHm_Chr3g0490761 RchiOBHm_Chr3g0490771 RchiOBHm_Chr3g0490951 RchiOBHm_Chr3g0491001 RchiOBHm_Chr3g0491011 RchiOBHm_Chr4g0412461 RchiOBHm_Chr4g0414161 RchiOBHm_Chr4g0414181 RchiOBHm_Chr4g0414191 RchiOBHm_Chr4g0414281 RchiOBHm_Chr4g0414441 RchiOBHm_Chr4g0414521 RchiOBHm_Chr4g0414531 RchiOBHm_Chr4g0417011 RchiOBHm_Chr4g0417021 RchiOBHm_Chr4g0417041 RchiOBHm_Chr4g0417071 RchiOBHm_Chr4g0417101 RchiOBHm_Chr4g0417531 RchiOBHm_Chr4g0417641 RchiOBHm_Chr4g0417651 RchiOBHm_Chr4g0417701 RchiOBHm_Chr4g0417731 RchiOBHm_Chr4g0417741 RchiOBHm_Chr4g0417781 RchiOBHm_Chr4g0418751 RchiOBHm_Chr4g0418791 RchiOBHm_Chr4g0418861 RchiOBHm_Chr4g0418881 RchiOBHm_Chr4g0418901 RchiOBHm_Chr4g0422451 RchiOBHm_Chr4g0422461 RchiOBHm_Chr4g0422471 RchiOBHm_Chr4g0422541 RchiOBHm_Chr4g0422561 RchiOBHm_Chr4g0422591 RchiOBHm_Chr4g0422651 RchiOBHm_Chr4g0422661 RchiOBHm_Chr5g0003251 RchiOBHm_Chr5g0003261 RchiOBHm_Chr5g0055871 RchiOBHm_Chr7g0204701 RchiOBHm_Chr7g0204741
rosa_laevigata RLG00000007607 RLG00000007932 RLG00000017606 RLG00000024418 RLG00000025629 RLG00000030586
rosa_multiflora Rmu_co7959167.1_g000001 Rmu_co8021330.1_g000001 Rmu_co8132128.1_g000001 Rmu_co8224744.1_g000001 Rmu_co8281865.1_g000001 Rmu_co8298487.1_g000001 Rmu_co8319035.1_g000001 Rmu_co8380035.1_g000001 Rmu_co8385371.1_g000001 Rmu_co8398173.1_g000001 Rmu_co8423363.1_g000001 Rmu_co8438275.1_g000001 Rmu_co8474729.1_g000001 Rmu_sc0000057.1_g000008 Rmu_sc0000350.1_g000023 Rmu_sc0000480.1_g000005 Rmu_sc0000654.1_g000021 Rmu_sc0000654.1_g000029 Rmu_sc0000654.1_g000032 Rmu_sc0000654.1_g000041 Rmu_sc0000654.1_g000045 Rmu_sc0000772.1_g000002 Rmu_sc0000772.1_g000041 Rmu_sc0000808.1_g000040 Rmu_sc0000830.1_g000062 Rmu_sc0000830.1_g000065 Rmu_sc0000830.1_g000072 Rmu_sc0000830.1_g000073 Rmu_sc0000935.1_g000020 Rmu_sc0000935.1_g000024 Rmu_sc0000935.1_g000026 Rmu_sc0000935.1_g000027 Rmu_sc0000935.1_g000031 Rmu_sc0000935.1_g000033 Rmu_sc0000962.1_g000033 Rmu_sc0000962.1_g000036 Rmu_sc0000962.1_g000063 Rmu_sc0000962.1_g000064 Rmu_sc0000962.1_g000065 Rmu_sc0001029.1_g000007 Rmu_sc0001063.1_g000014 Rmu_sc0001149.1_g000010 Rmu_sc0001149.1_g000011 Rmu_sc0001358.1_g000009 Rmu_sc0001448.1_g000003 Rmu_sc0001448.1_g000004 Rmu_sc0001729.1_g000005 Rmu_sc0001729.1_g000007 Rmu_sc0001729.1_g000020 Rmu_sc0001729.1_g000023 Rmu_sc0001793.1_g000015 Rmu_sc0002494.1_g000018 Rmu_sc0002494.1_g000019 Rmu_sc0002604.1_g000022 Rmu_sc0002922.1_g000011 Rmu_sc0003008.1_g000009 Rmu_sc0003221.1_g000061 Rmu_sc0003221.1_g000062 Rmu_sc0003459.1_g000014 Rmu_sc0003480.1_g000015 Rmu_sc0003541.1_g000016 Rmu_sc0003541.1_g000020 Rmu_sc0004035.1_g000001 Rmu_sc0004035.1_g000005 Rmu_sc0004035.1_g000011 Rmu_sc0004142.1_g000004 Rmu_sc0004142.1_g000010 Rmu_sc0004353.1_g000008 Rmu_sc0004616.1_g000009 Rmu_sc0004616.1_g000010 Rmu_sc0005231.1_g000004 Rmu_sc0006380.1_g000025 Rmu_sc0006492.1_g000010 Rmu_sc0006895.1_g000001 Rmu_sc0006895.1_g000002 Rmu_sc0006895.1_g000005 Rmu_sc0007034.1_g000004 Rmu_sc0007104.1_g000006 Rmu_sc0008990.1_g000003 Rmu_sc0008990.1_g000004 Rmu_sc0009106.1_g000003 Rmu_sc0009516.1_g000002 Rmu_sc0009516.1_g000003 Rmu_sc0009516.1_g000004 Rmu_sc0009516.1_g000005 Rmu_sc0009645.1_g000001 Rmu_sc0010274.1_g000001 Rmu_sc0010274.1_g000002 Rmu_sc0010419.1_g000003 Rmu_sc0010917.1_g000017 Rmu_sc0011213.1_g000001 Rmu_sc0011228.1_g000007 Rmu_sc0011538.1_g000011 Rmu_sc0011538.1_g000014 Rmu_sc0011538.1_g000015 Rmu_sc0012211.1_g000006 Rmu_sc0012351.1_g000003 Rmu_sc0012351.1_g000005 Rmu_sc0012915.1_g000002 Rmu_sc0013088.1_g000001 Rmu_sc0013459.1_g000001 Rmu_sc0013765.1_g000004 Rmu_sc0013765.1_g000005 Rmu_sc0014003.1_g000012 Rmu_sc0014003.1_g000014 Rmu_sc0014698.1_g000001 Rmu_sc0015740.1_g000001 Rmu_sc0016429.1_g000003 Rmu_sc0018885.1_g000001 Rmu_sc0020345.1_g000001 Rmu_sc0027791.1_g000001 Rmu_sc0037325.1_g000001 Rmu_ssc0000010.1_g000024 Rmu_ssc0000010.1_g000025 Rmu_ssc0000083.1_g000021 Rmu_ssc0000340.1_g000002 Rmu_ssc0000386.1_g000002 Rmu_ssc0000386.1_g000024 Rmu_ssc0000386.1_g000025 Rmu_ssc0000386.1_g000034 Rmu_ssc0000386.1_g000037 Rmu_ssc0000477.1_g000001
rosa_roxburghii Rroxscaffold_161G00448010 Rroxscaffold_164G00436080 Rroxscaffold_1G00024500 Rroxscaffold_2G00124290 Rroxscaffold_3G00222940 Rroxscaffold_3G00227440 Rroxscaffold_4G00304810 Rroxscaffold_4G00330180 Rroxscaffold_4G00330200 Rroxscaffold_5G00356620 Rroxscaffold_5G00358170 Rroxscaffold_5G00360880 Rroxscaffold_5G00361220 Rroxscaffold_5G00361950 Rroxscaffold_5G00361960 Rroxscaffold_5G00361990 Rroxscaffold_5G00362370 Rroxscaffold_5G00364540 Rroxscaffold_5G00364550 Rroxscaffold_5G00364580 Rroxscaffold_5G00364600 Rroxscaffold_6G00393290 Rroxscaffold_6G00412680 Rroxscaffold_6G00412790 Rroxscaffold_6G00413470 Rroxscaffold_6G00413720 Rroxscaffold_6G00416070 Rroxscaffold_7G00205400
rosa_rugosa Rorug01G0017300 Rorug01G0017400 Rorug01G0018000 Rorug01G0018100 Rorug01G0211500 Rorug02G0638200 Rorug03G0070000 Rorug03G0071200 Rorug03G0081000 Rorug03G0086500 Rorug03G0089300 Rorug03G0095300 Rorug03G0096000 Rorug03G0096000 Rorug04G0055000 Rorug04G0078300 Rorug04G0104100.1 Rorug04G0113800 Rorug04G0126700 Rorug04G0128000 Rorug04G0145900 Rorug04G0148700 Rorug04G0149100 Rorug04G0149100 Rorug04G0149200 Rorug04G0149300 Rorug04G0154900 Rorug04G0180400 Rorug04G0180500 Rorug04G0180700 Rorug04G0180800 Rorug04G0401500 Rorug04G0402100 Rorug05G0288600 Rorug05G0334100 Rorug07G0176400
rosa_samantha Rh1DG043200 Rh1DG043500 Rh1DG043900 Rh1DG222800 Rh3CG039900 Rh3CG156200 Rh3CG328500 Rh3CG328800 Rh3DG165000 Rh4AG208400 Rh4BG205600 Rh4BG213900 Rh4BG243900 Rh4CG198800 Rh4DG168600 Rh4DG180100 Rh4DG180300 Rh4DG180600 Rh4DG181200 Rh4DG181600 Rh4DG181700 Rh4DG183700 Rh4DG184000 Rh4DG184400 Rh4DG184700 Rh4DG206100 Rh4DG206200 Rh4DG206300 Rh4DG215600 Rh4DG238700 Rh4DG238900 Rh5DG390300
rosa_wichuraiana Rw0G005050 Rw0G009260 Rw0G009280 Rw0G015600 Rw0G023570 Rw1G002140 Rw1G002170 Rw1G002210 Rw1G002240 Rw1G019500 Rw2G015490 Rw3G003020 Rw3G010900 Rw3G012030 Rw3G012790 Rw3G013050 Rw3G013540 Rw3G013640 Rw3G013650 Rw3G026050 Rw3G026070 Rw4G015740 Rw4G015790 Rw4G015910 Rw4G015930 Rw4G015950 Rw4G017900 Rw4G017930 Rw4G018440 Rw4G018450 Rw4G018530 Rw4G020720 Rw4G020760 Rw5G019250 Rw5G034370 Rw7G018700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1749
AasI GACNNNNNNGTC 1 cut(s) 2649
AccI GTMKAC 3 cut(s) 1706, 2962, 3379
AccII CGCG 1 cut(s) 2769
AclWI GGATC 6 cut(s) 749, 1339, 1482, 2342, 2555, 2942
AcoI YGGCCR 1 cut(s) 2266
AcsI RAATTY 8 cut(s) 363, 1325, 1807, 2026, 2147, 2180, 2476, 3549
AcuI CTGAAG 2 cut(s) 1739, 2762
AcvI CACGTG 1 cut(s) 1497
AfaI GTAC 8 cut(s) 777, 1337, 1553, 2115, 2262, 2286, 3199, 3238
AfiI CCNNNNNNNGG 8 cut(s) 811, 984, 2090, 2903, 3050, 3270, 3427, 3579
AflII CTTAAG 1 cut(s) 1972
AflIII ACRYGT 4 cut(s) 1534, 1993, 3374, 3409
AhdI GACNNNNNGTC 1 cut(s) 3441
AjnI CCWGG 3 cut(s) 27, 1600, 3222
AjuI GAANNNNNNNTTGG 4 cut(s) 179, 211, 3423, 3455
AleI CACNNNNGTG 1 cut(s) 1482
Alw21I GWGCWC 3 cut(s) 2515, 2760, 2904
Alw26I GTCTC 6 cut(s) 968, 1672, 1913, 2915, 3428, 3540
AlwI GGATC 6 cut(s) 749, 1339, 1482, 2342, 2555, 2942
AlwNI CAGNNNCTG 2 cut(s) 1928, 2785
AoxI GGCC 8 cut(s) 431, 2081, 2266, 3052, 3521, 3606, 3769, 3779
ApeKI GCWGC 7 cut(s) 23, 121, 770, 927, 2809, 3015, 3765
ApoI RAATTY 8 cut(s) 363, 1325, 1807, 2026, 2147, 2180, 2476, 3549
ArsI GACNNNNNNTTYG 4 cut(s) 3014, 3046, 3063, 3095
Asp700I GAANNNNTTC 1 cut(s) 3549
AspA2I CCTAGG 1 cut(s) 983
AspLEI GCGC 3 cut(s) 1560, 2771, 3131
AspS9I GGNCC 4 cut(s) 3052, 3443, 3770, 3780
AsuHPI GGTGA 7 cut(s) 1367, 1469, 1496, 1590, 3409, 3703, 3727
AvaII GGWCC 1 cut(s) 3443
AvrII CCTAGG 1 cut(s) 983
AxyI CCTNAGG 1 cut(s) 2315
BaeGI GKGCMC 1 cut(s) 3164
BaeI ACNNNNGTAYC 2 cut(s) 2355, 2388
BalI TGGCCA 1 cut(s) 2268
BarI GAAGNNNNNNTAC 2 cut(s) 126, 158
BbrPI CACGTG 1 cut(s) 1497
BbsI GAAGAC 3 cut(s) 216, 635, 1416
Bbv12I GWGCWC 3 cut(s) 2515, 2760, 2904
BbvI GCAGC 7 cut(s) 10, 108, 757, 939, 2796, 3002, 3777
BceAI ACGGC 1 cut(s) 1838
BcgI CGANNNNNNTGC 2 cut(s) 941, 975
BciT130I CCWGG 3 cut(s) 29, 1602, 3224
BciVI GTATCC 1 cut(s) 3576
BclI TGATCA 2 cut(s) 888, 1812
BcoDI GTCTC 6 cut(s) 968, 1672, 1913, 2915, 3428, 3540
BfrI CTTAAG 1 cut(s) 1972
BfuI GTATCC 1 cut(s) 3576
BlnI CCTAGG 1 cut(s) 983
BmcAI AGTACT 2 cut(s) 1553, 2262
Bme1390I CCNGG 3 cut(s) 29, 1602, 3224
Bme18I GGWCC 1 cut(s) 3443
BmeRI GACNNNNNGTC 1 cut(s) 3441
BmgT120I GGNCC 4 cut(s) 3052, 3443, 3770, 3780
BmrFI CCNGG 3 cut(s) 29, 1602, 3224
BmrI ACTGGG 2 cut(s) 2511, 3378
BmuI ACTGGG 2 cut(s) 2511, 3378
BpiI GAAGAC 3 cut(s) 216, 635, 1416
BplI GAGNNNNNCTC 2 cut(s) 2497, 2529
BpmI CTGGAG 2 cut(s) 1092, 2854
Bpu10I CCTNAGC 5 cut(s) 2075, 2805, 2898, 3165, 3525
BpuEI CTTGAG 7 cut(s) 48, 1347, 1705, 2492, 2864, 3410, 3515
Bsa29I ATCGAT 1 cut(s) 1184
BsaAI YACGTR 3 cut(s) 1497, 1619, 3412
BsaI GGTCTC 2 cut(s) 968, 2915
BsaJI CCNNGG 6 cut(s) 27, 919, 983, 1480, 2062, 3223
BsaWI WCCGGW 2 cut(s) 1213, 2350
BsaXI ACNNNNNCTCC 4 cut(s) 1544, 1574, 2244, 2274
Bsc4I CCNNNNNNNGG 8 cut(s) 811, 984, 2090, 2903, 3050, 3270, 3427, 3579
Bse1I ACTGG 6 cut(s) 1933, 2517, 2871, 2958, 3384, 3650
Bse21I CCTNAGG 1 cut(s) 2315
Bse3DI GCAATG 1 cut(s) 3402
BseBI CCWGG 3 cut(s) 29, 1602, 3224
BseCI ATCGAT 1 cut(s) 1184
BseDI CCNNGG 6 cut(s) 27, 919, 983, 1480, 2062, 3223
BseLI CCNNNNNNNGG 8 cut(s) 811, 984, 2090, 2903, 3050, 3270, 3427, 3579
BseMI GCAATG 1 cut(s) 3402
BseMII CTCAG 8 cut(s) 480, 2329, 2777, 2889, 2963, 3039, 3084, 3208
BseNI ACTGG 6 cut(s) 1933, 2517, 2871, 2958, 3384, 3650
BseRI GAGGAG 1 cut(s) 2729
BseSI GKGCMC 1 cut(s) 3164
BseXI GCAGC 7 cut(s) 10, 108, 757, 939, 2796, 3002, 3777
BseYI CCCAGC 1 cut(s) 1859
BsgI GTGCAG 2 cut(s) 1132, 2968
Bsh1236I CGCG 1 cut(s) 2769
Bsh1285I CGRYCG 1 cut(s) 2132
BshFI GGCC 8 cut(s) 433, 2083, 2268, 3054, 3523, 3608, 3771, 3781
BshVI ATCGAT 1 cut(s) 1184
BsiEI CGRYCG 1 cut(s) 2132
BsiHKAI GWGCWC 3 cut(s) 2515, 2760, 2904
BsiSI CCGG 4 cut(s) 1214, 2163, 2351, 2657
BslFI GGGAC 2 cut(s) 2655, 3729
BslI CCNNNNNNNGG 8 cut(s) 811, 984, 2090, 2903, 3050, 3270, 3427, 3579
BsmAI GTCTC 6 cut(s) 968, 1672, 1913, 2915, 3428, 3540
BsmBI CGTCTC 1 cut(s) 3428
BsmFI GGGAC 2 cut(s) 2655, 3729
BsmI GAATGC 2 cut(s) 2134, 2571
BsnI GGCC 8 cut(s) 433, 2083, 2268, 3054, 3523, 3608, 3771, 3781
Bso31I GGTCTC 2 cut(s) 968, 2915
Bsp1286I GDGCHC 4 cut(s) 2515, 2760, 2904, 3164
Bsp1407I TGTACA 1 cut(s) 775
Bsp19I CCATGG 1 cut(s) 1480
BspANI GGCC 8 cut(s) 433, 2083, 2268, 3054, 3523, 3608, 3771, 3781
BspCNI CTCAG 8 cut(s) 481, 2328, 2778, 2890, 2962, 3040, 3085, 3207
BspDI ATCGAT 1 cut(s) 1184
BspFNI CGCG 1 cut(s) 2769
BspHI TCATGA 2 cut(s) 655, 1519
BspPI GGATC 6 cut(s) 749, 1339, 1482, 2342, 2555, 2942
BspTI CTTAAG 1 cut(s) 1972
BspTNI GGTCTC 2 cut(s) 968, 2915
BsrDI GCAATG 1 cut(s) 3402
BsrGI TGTACA 1 cut(s) 775
BsrI ACTGG 6 cut(s) 1933, 2517, 2871, 2958, 3384, 3650
BssECI CCNNGG 6 cut(s) 27, 919, 983, 1480, 2062, 3223
BssNAI GTATAC 1 cut(s) 1707
BssT1I CCWWGG 3 cut(s) 919, 983, 1480
Bst1107I GTATAC 1 cut(s) 1707
Bst2UI CCWGG 3 cut(s) 29, 1602, 3224
Bst4CI ACNGT 8 cut(s) 575, 1846, 2093, 2102, 2260, 2458, 2906, 3075
Bst6I CTCTTC 3 cut(s) 2781, 2997, 3645
BstAFI CTTAAG 1 cut(s) 1972
BstAPI GCANNNNNTGC 1 cut(s) 2244
BstAUI TGTACA 1 cut(s) 775
BstBAI YACGTR 3 cut(s) 1497, 1619, 3412
BstC8I GCNNGC 1 cut(s) 1121
BstDSI CCRYGG 1 cut(s) 1480
BstENI CCTNNNNNAGG 1 cut(s) 809
BstFNI CGCG 1 cut(s) 2769
BstHHI GCGC 3 cut(s) 1560, 2771, 3131
BstMAI GTCTC 6 cut(s) 968, 1672, 1913, 2915, 3428, 3540
BstMCI CGRYCG 1 cut(s) 2132
BstNI CCWGG 3 cut(s) 29, 1602, 3224
BstNSI RCATGY 3 cut(s) 770, 1997, 3378
BstSCI CCNGG 3 cut(s) 27, 1600, 3222
BstSLI GKGCMC 1 cut(s) 3164
BstSNI TACGTA 1 cut(s) 1619
BstUI CGCG 1 cut(s) 2769
BstV1I GCAGC 7 cut(s) 10, 108, 757, 939, 2796, 3002, 3777
BstV2I GAAGAC 3 cut(s) 216, 635, 1416
BstX2I RGATCY 1 cut(s) 741
BstXI CCANNNNNNTGG 1 cut(s) 1735
BstYI RGATCY 1 cut(s) 741
BstZ17I GTATAC 1 cut(s) 1707
Bsu15I ATCGAT 1 cut(s) 1184
Bsu36I CCTNAGG 1 cut(s) 2315
BsuI GTATCC 1 cut(s) 3576
BsuRI GGCC 8 cut(s) 433, 2083, 2268, 3054, 3523, 3608, 3771, 3781
BsuTUI ATCGAT 1 cut(s) 1184
BtgI CCRYGG 1 cut(s) 1480
BtgZI GCGATG 1 cut(s) 1260
BtsI GCAGTG 3 cut(s) 1063, 2758, 3092
BtsIMutI CAGTG 6 cut(s) 1063, 2107, 2758, 3092, 3391, 3643
Cac8I GCNNGC 1 cut(s) 1121
CaiI CAGNNNCTG 2 cut(s) 1928, 2785
CciI TCATGA 2 cut(s) 655, 1519
CfoI GCGC 3 cut(s) 1560, 2771, 3131
Cfr13I GGNCC 4 cut(s) 3052, 3443, 3770, 3780
ClaI ATCGAT 1 cut(s) 1184
CseI GACGC 2 cut(s) 452, 2080
Csp6I GTAC 8 cut(s) 776, 1336, 1552, 2114, 2261, 2285, 3198, 3237
CspCI CAANNNNNGTGG 2 cut(s) 2013, 2048
CviQI GTAC 8 cut(s) 776, 1336, 1552, 2114, 2261, 2285, 3198, 3237
DraI TTTAAA 3 cut(s) 1609, 1626, 1765
DrdI GACNNNNNNGTC 1 cut(s) 2649
DriI GACNNNNNGTC 1 cut(s) 3441
DseDI GACNNNNNNGTC 1 cut(s) 2649
EaeI YGGCCR 1 cut(s) 2266
Eam1104I CTCTTC 3 cut(s) 2781, 2997, 3645
Eam1105I GACNNNNNGTC 1 cut(s) 3441
EarI CTCTTC 3 cut(s) 2781, 2997, 3645
EciI GGCGGA 2 cut(s) 2426, 2724
Eco105I TACGTA 1 cut(s) 1619
Eco130I CCWWGG 3 cut(s) 919, 983, 1480
Eco147I AGGCCT 1 cut(s) 433
Eco31I GGTCTC 2 cut(s) 968, 2915
Eco32I GATATC 1 cut(s) 2160
Eco47I GGWCC 1 cut(s) 3443
Eco57I CTGAAG 2 cut(s) 1739, 2762
Eco72I CACGTG 1 cut(s) 1497
Eco81I CCTNAGG 1 cut(s) 2315
EcoNI CCTNNNNNAGG 1 cut(s) 809
EcoO109I RGGNCCY 1 cut(s) 3052
EcoRII CCWGG 3 cut(s) 27, 1600, 3222
EcoRV GATATC 1 cut(s) 2160
EcoT14I CCWWGG 3 cut(s) 919, 983, 1480
EcoT22I ATGCAT 1 cut(s) 1509
ErhI CCWWGG 3 cut(s) 919, 983, 1480
Esp3I CGTCTC 1 cut(s) 3428
FalI AAGNNNNNCTT 8 cut(s) 662, 694, 1325, 1357, 1356, 1388, 2100, 2132
FaqI GGGAC 2 cut(s) 2655, 3729
FbaI TGATCA 2 cut(s) 888, 1812
FblI GTMKAC 3 cut(s) 1706, 2962, 3379
GlaI GCGC 3 cut(s) 1559, 2770, 3130
GsaI CCCAGC 1 cut(s) 1863
GsuI CTGGAG 2 cut(s) 1092, 2854
HaeIII GGCC 8 cut(s) 433, 2083, 2268, 3054, 3523, 3608, 3771, 3781
HapII CCGG 4 cut(s) 1214, 2163, 2351, 2657
HgaI GACGC 2 cut(s) 452, 2080
HhaI GCGC 3 cut(s) 1560, 2771, 3131
Hin6I GCGC 3 cut(s) 1558, 2769, 3129
HinP1I GCGC 3 cut(s) 1558, 2769, 3129
HincII GTYRAC 3 cut(s) 724, 2721, 3348
HindII GTYRAC 3 cut(s) 724, 2721, 3348
HindIII AAGCTT 1 cut(s) 203
HpaII CCGG 4 cut(s) 1214, 2163, 2351, 2657
HphI GGTGA 7 cut(s) 1367, 1469, 1496, 1590, 3409, 3703, 3727
HpyCH4III ACNGT 8 cut(s) 575, 1846, 2093, 2102, 2260, 2458, 2906, 3075
HspAI GCGC 3 cut(s) 1558, 2769, 3129
Ksp22I TGATCA 2 cut(s) 888, 1812
LmnI GCTCC 8 cut(s) 458, 1307, 1565, 1577, 2518, 2737, 2873, 3012
Lsp1109I GCAGC 7 cut(s) 10, 108, 757, 939, 2796, 3002, 3777
MaeIII GTNAC 5 cut(s) 1440, 1629, 2102, 2254, 2452
MfeI CAATTG 4 cut(s) 1665, 2501, 3183, 3212
MflI RGATCY 1 cut(s) 741
MhlI GDGCHC 4 cut(s) 2515, 2760, 2904, 3164
MlsI TGGCCA 1 cut(s) 2268
MluNI TGGCCA 1 cut(s) 2268
MlyI GAGTC 4 cut(s) 125, 758, 2262, 2888
MmeI TCCRAC 7 cut(s) 177, 219, 951, 1372, 2229, 2256, 2832
Mox20I TGGCCA 1 cut(s) 2268
Mph1103I ATGCAT 1 cut(s) 1509
MroXI GAANNNNTTC 1 cut(s) 3549
MscI TGGCCA 1 cut(s) 2268
MslI CAYNNNNRTG 3 cut(s) 1482, 2555, 2695
Msp20I TGGCCA 1 cut(s) 2268
MspA1I CMGCKG 2 cut(s) 1859, 3768
MspCI CTTAAG 1 cut(s) 1972
MspI CCGG 4 cut(s) 1214, 2163, 2351, 2657
MspR9I CCNGG 3 cut(s) 29, 1602, 3224
MunI CAATTG 4 cut(s) 1665, 2501, 3183, 3212
Mva1269I GAATGC 2 cut(s) 2134, 2571
MvaI CCWGG 3 cut(s) 29, 1602, 3224
MvnI CGCG 1 cut(s) 2769
NcoI CCATGG 1 cut(s) 1480
NmeAIII GCCGAG 1 cut(s) 2109
NmuCI GTSAC 3 cut(s) 2102, 2254, 2452
NsiI ATGCAT 1 cut(s) 1509
NspI RCATGY 3 cut(s) 770, 1997, 3378
OliI CACNNNNGTG 1 cut(s) 1482
PagI TCATGA 2 cut(s) 655, 1519
PceI AGGCCT 1 cut(s) 433
PciI ACATGT 2 cut(s) 1993, 3374
PctI GAATGC 2 cut(s) 2134, 2571
PdmI GAANNNNTTC 1 cut(s) 3549
PfeI GAWTC 6 cut(s) 801, 1661, 2683, 3464, 3670, 3722
PleI GAGTC 4 cut(s) 124, 757, 2261, 2887
PmaCI CACGTG 1 cut(s) 1497
PmlI CACGTG 1 cut(s) 1497
PpsI GAGTC 4 cut(s) 124, 757, 2261, 2887
Ppu21I YACGTR 3 cut(s) 1497, 1619, 3412
PscI ACATGT 2 cut(s) 1993, 3374
PsiI TTATAA 1 cut(s) 1749
Psp6I CCWGG 3 cut(s) 27, 1600, 3222
PspCI CACGTG 1 cut(s) 1497
PspFI CCCAGC 1 cut(s) 1859
PspGI CCWGG 3 cut(s) 27, 1600, 3222
PspPI GGNCC 4 cut(s) 3052, 3443, 3770, 3780
PstNI CAGNNNCTG 2 cut(s) 1928, 2785
PsuI RGATCY 1 cut(s) 741
PvuII CAGCTG 1 cut(s) 1859
RsaI GTAC 8 cut(s) 777, 1337, 1553, 2115, 2262, 2286, 3199, 3238
RsaNI GTAC 8 cut(s) 776, 1336, 1552, 2114, 2261, 2285, 3198, 3237
RseI CAYNNNNRTG 3 cut(s) 1482, 2555, 2695
Sau96I GGNCC 4 cut(s) 3052, 3443, 3770, 3780
ScaI AGTACT 2 cut(s) 1553, 2262
SchI GAGTC 4 cut(s) 125, 758, 2262, 2888
ScrFI CCNGG 3 cut(s) 29, 1602, 3224
SduI GDGCHC 4 cut(s) 2515, 2760, 2904, 3164
SinI GGWCC 1 cut(s) 3443
SmiMI CAYNNNNRTG 3 cut(s) 1482, 2555, 2695
SmlI CTYRAG 8 cut(s) 63, 1362, 1684, 1972, 2471, 2843, 3425, 3530
SmoI CTYRAG 8 cut(s) 63, 1362, 1684, 1972, 2471, 2843, 3425, 3530
SnaBI TACGTA 1 cut(s) 1619
SseBI AGGCCT 1 cut(s) 433
SspI AATATT 3 cut(s) 1233, 1427, 1435
StuI AGGCCT 1 cut(s) 433
StyD4I CCNGG 3 cut(s) 27, 1600, 3222
StyI CCWWGG 3 cut(s) 919, 983, 1480
TaaI ACNGT 8 cut(s) 575, 1846, 2093, 2102, 2260, 2458, 2906, 3075
TaqI TCGA 4 cut(s) 728, 1184, 2937, 3070
TatI WGTACW 6 cut(s) 775, 1551, 2113, 2260, 3197, 3236
TauI GCSGC 4 cut(s) 166, 2766, 2769, 3771
TfiI GAWTC 6 cut(s) 801, 1661, 2683, 3464, 3670, 3722
TscAI CASTG 6 cut(s) 1063, 2107, 2765, 3092, 3391, 3650
TseFI GTSAC 3 cut(s) 2102, 2254, 2452
TseI GCWGC 7 cut(s) 23, 121, 770, 927, 2809, 3015, 3765
Tsp45I GTSAC 3 cut(s) 2102, 2254, 2452
TspGWI ACGGA 7 cut(s) 264, 2459, 2580, 3197, 3329, 3435, 3679
TspRI CASTG 6 cut(s) 1063, 2107, 2765, 3092, 3391, 3650
Vha464I CTTAAG 1 cut(s) 1972
VpaK11BI GGWCC 1 cut(s) 3443
XagI CCTNNNNNAGG 1 cut(s) 809
XapI RAATTY 8 cut(s) 363, 1325, 1807, 2026, 2147, 2180, 2476, 3549
XbaI TCTAGA 3 cut(s) 1399, 2875, 3301
XceI RCATGY 3 cut(s) 770, 1997, 3378
XmaJI CCTAGG 1 cut(s) 983
XmiI GTMKAC 3 cut(s) 1706, 2962, 3379
XmnI GAANNNNTTC 1 cut(s) 3549
ZrmI AGTACT 2 cut(s) 1553, 2262
Zsp2I ATGCAT 1 cut(s) 1509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.