Rw4G015950

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
36651663 .. 36657211
5549 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G015950.1

Sequence Viewer

Length: 3282 bp
ATGTTAAATGATGCGGCAGAGAAACCACAAGCTCTGGAGGCAGTGGAAGGATGGGTGAAGAAACTCAAAGACATAGCTGATGATGCAGACAATGTGCTGGATGAATGCAACTATGAAGTTCTCCGACGTAAGGTTGAACTGCAAAACCACATGAAGAGGAAGGTACTCAACTTTCTTTCTGCATCCAATCCCATTATATTTCGCCTTAAAATGGCAAATAGGATCAAGCATATCAATGCATCACTTTTGGATCTCAAGAGTGATGCATCTCTCGTTGGATTAATTGAAAGAAGAATAGATGCAACTCCGCAAGGTGTACGGCCGGACAGAAATCAAACCGACTCATTCTTTGAGCCGGATGAAAAGGTCATTGGAAGGGAGGGTGTTGTGTCAGACATTGTTGAGAGCTTGACCAACTCCACCAATCAGCAGATCAATCTTTCAGTTATGGCCATTGTGGGAATGCCGGGATTGGGAAAGACGACTTTGGCTAAATCAGTGTACCATAAACCTGCCATAGATACACACTTCGACAAAAAATATGGGTGTGTGTATCTAACATTTTTGAATGCCAAGGTGGCATCAATTTCGGAAACACTTACTCGGTGTGAGTTGGACAAACTATCAAATGATGAATGTTGGTCCATCTTGAAGCAAAGAGCATTGTTTTCAGATGGCAATGATCCAAACCGAGAGAGAATTGGAAAGGAAATTGCTAAGAAGTGTGGAGGCGTCCCGTTGGTGGCAAAGGTTTTAGGAGGCATGATGCGTACTAAAAATAGTACGAAAGAATGGTTGTCAATTCAAGCAAGTCGAATATGGGAATTACCCGAAGGAGATAAAAGAATCATGTCTGTTTTAAAGTTGAGTTTTCAGAATTTGAAATCACCACTTTTGAAACAATGCTTTGCATATTGCTCAATGTTCCCAGAAGATTTCACAATTGAAAGAGAAAAGTTGATCCAACTATGGATGGCTCAGGGATTTCTCCATCCTTATCCTGGCCAGCATATGCAACAAATGGAGGATATAGGTGATGAGTATTTCAATATTTTATGTCAAAACTCCTTATTCCAAGATGTTACCAAGGATGACAATGGCATTATAGAGGACTGTAAAATGCACGATCTTGTGCATGATCTTGCAAAAGAAGTATCCAAATGTGAGAGTTTGATACGGAATTTAAATAATGTGATGGAGGATCACGATACATCTGAGATTCGACATGTTTCACAAGTTCCTACTTCAACACGAGAAAGAATGTCAGAGTCAAGTATGGCAAGATTGCGCTCTCTATTTATGAGTGATCAAGTCCCCAGTACCATTTTTCTAAAGTTGAGAGCTTTACGTGTCTTAGATTTAGAAGAGGCGGGTATAAAGGAGTTGCCGAATTCAATTGGCAAGTTGAAGCATTTGAGGTATCTAGACATTTCCTACACAAGAATCAAGGCACTCCCAAAATCTATTGGCAAGCTCTACAACCTTCAAACACTGAGAATTGGTAATTCATCTCTTCAAACACTGAGAATTGGTAATTCATCTCTCACAATGTTGCCACAGGAAATGAAAAACTTGATCAACTTGAGACATGTTTATTTTGATGAGGATATTGAGATTCCAGCTGGGATATTGGGGCAATTGTCCAATCTTAGAACATTACCTCACTTCAGTGTGGGCAACGAGATGGGACCTGGAATTGGAGAGTTAGGTGGCTTGAAGCAATTGAAAGGCCGACTAACAATTTTGAATCTAGAACATGTGAAGAGTGAAGAAGAAGCGAAGAAGGCAAAATTGGAGGAGAAGAGAGATGTATGCGAGCTAAAATTTAAATGGACAAGAGAGAACGACACAAGCAGCAGCATTAATGATGAACATGAACATGTACTAGAAGGCCTCCGGCCACATTCTAATTTGCAAAGGCTGCAGATTAAAGGATTCAGGGGTGCCAGATCTCCGTCATGGGTGATGTGTCTCAACAACTTGAAGAAGATTAAATTATCCCACTGCCGCAATTGTGAAGGAGTTCCAGCACTGGGTCAGCTACCTAATCTTAGACATGTCGAGATTGAGTGGATGGATAACCTAAAACGTGTGGGAGCTGATGGTCCAGACTCGTTCCCTCTTGTTGAGCATATGAGGATATATGATTGCCCAAGCCTAGAGTCGATTTGGATCACACAGGGCAATGCTTCTCTCCGTGAATTGATCATAAGGGATTGTAATGGATTGTCAAGCCTACTGATTGGGCCCGATTGCTGCACCTCTATTCAAAAATTGGTTATTGAGGCCTGTTCTAATCTAACATCACTTCCAACCACAGAGGGGGGCATTGCATCTCTAGAGTTGGAGATTAGTAAATGTGATCGATTATCAAGCCTACCAAGTGGTCTCCTCCTACGCTGCACCTCTCTGACGCTTCGTTATTGTCCTAATCTAACATCAATATTTCCCATCACACAGGAAATGCCATCATCTCTCCGTGAATTGACGATTGAAGATTGTACGGGATTATCAAGTCTACCACTAAGCGGGCTCCTCTCTCTTGATGAGTTGAGGATATACGATTGCTCTAGTCTAGCACCATCCATTTCAGTCCCATCAGGCGTCCTCCGCAGATTGATTGTTGTTAATTGTGAGGAATTGACATCCATTTCAATGACGGCGTCAAGTCTTCTACTTGAGGAGTTGTTTATAGGGCATTGCAATAATCTACAATCTATTGTTCCAGCAGATTTACAGGGCTTCCCATGTCTCCGTCAGTTGATAATACGGCATTGTGGGAAATTAAAATATCTGCCGACAGGGTTTCACTGCCTCACCCGATTGAAGATACTGTATATTGGCCCGTTCTGGGAGGAGCTCCATTCCTTCCCTGAGTTTCAGCTTCCACCACATTCACAACTTGAATCGTTATCCTTGATAGGGTGGCCTAAGCTCAAGTCTCTGCCCCAGCAAATTCAGCACTTGACTTGTCTAAACACTTTGTCTATACTAGAATTCAGCGGAGTGCATGCTCTTCCTGAGTGGTTGGGAAATCTCACATCTCTTGAGAATCTGTATAATTGGAATTGTGAGAATCTCAAGTATCTACCTACACTCCAAGCTATGCAACGCCTCACCAAATTGAAGAAGCTCGGTGTTTGGAGATGTCCCCTCCTCAAGGAAAATTGCACCAAGGACTCAGGCCCTGAATGGCCCAAGATTGCTCATATCCCAACTATCGACATTGCTGCTGAATCTATTAGGGACCTCACTAAATTAATAATGCAGCTGGAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

1093

Amino Acids

123.35

Weight (kDa)

6.75

Isoelectric Point (pI)

44.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 2 - 50 9.4e-10 Rx N-terminal domain
NB-ARC PF00931 129 - 180 9e-09 NB-ARC domain
WHD_DRP PF23559 308 - 382 2e-26 Disease resistance protein Winged helix domain
LRR_14 PF23598 429 - 720 1.2e-33 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 566 - 692 4.1e-39 R13L1/DRL21 LRRs
LRR_RPS2 PF23247 817 - 932 9.5e-06 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_14 PF23598 968 - 1059 1.3e-07 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000029)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13530 FvH4_4g18270 FvH4_6g12200 FvH4_6g12460 FvH4_6g12461 FvH4_6g13450 FvH4_6g15090 FvH4_6g15220 FvH4_6g15230 FvH4_6g15250 FvH4_6g15251 FvH4_6g15340 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47980 FvH4_6g47980 FvH4_6g47980 FvH4_6g48170 FvH4_6g48310 FvH4_6g48310 FvH4_6g48850 FvH4_6g48881 FvH4_7g11830
malus_domestica MD02G1059900.v1.1 MD02G1069600.v1.1 MD02G1069700.v1.1 MD02G1070100.v1.1 MD02G1070200.v1.1 MD02G1070300.v1.1 MD02G1070800.v1.1 MD02G1070900.v1.1 MD02G1071200.v1.1 MD02G1071400.v1.1 MD02G1071900.v1.1 MD02G1075200.v1.1 MD03G1048000.v1.1 MD03G1049100.v1.1 MD03G1049200.v1.1 MD03G1052500.v1.1 MD03G1054100.v1.1 MD03G1054300.v1.1 MD03G1054400.v1.1 MD04G1113400.v1.1 MD04G1211100.v1.1 MD04G1211200.v1.1 MD05G1174900.v1.1 MD05G1175000.v1.1 MD05G1175900.v1.1 MD05G1243400.v1.1 MD07G1031500.v1.1 MD07G1031600.v1.1 MD07G1032500.v1.1 MD11G1046800.v1.1 MD11G1046900.v1.1 MD11G1047000.v1.1 MD11G1050400.v1.1 MD11G1050600.v1.1 MD11G1050800.v1.1 MD11G1051100.v1.1 MD11G1051600.v1.1 MD11G1051700.v1.1 MD11G1054600.v1.1 MD11G1055600.v1.1 MD11G1055700.v1.1 MD11G1055800.v1.1 MD11G1056000.v1.1 MD12G1126600.v1.1 MD12G1126700.v1.1 MD12G1126800.v1.1 MD12G1127300.v1.1 MD12G1127600.v1.1 MD12G1127900.v1.1 MD12G1128100.v1.1 MD12G1128300.v1.1 MD15G1261500.v1.1
prunus_persica Prupe.1G010700_v2.0.a1 Prupe.1G010800_v2.0.a1 Prupe.1G011000_v2.0.a1 Prupe.1G159600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163700_v2.0.a1 Prupe.1G163700_v2.0.a1 Prupe.1G163800_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G235500_v2.0.a1 Prupe.2G067400_v2.0.a1 Prupe.2G067500_v2.0.a1 Prupe.2G111700_v2.0.a1 Prupe.2G111800_v2.0.a1 Prupe.3G012000_v2.0.a1 Prupe.6G243400_v2.0.a1 Prupe.6G243500_v2.0.a1 Prupe.6G243600_v2.0.a1 Prupe.6G243700_v2.0.a1 Prupe.6G243800_v2.0.a1 Prupe.6G243900_v2.0.a1
pyrus_communis pycom02g04860 pycom02g04880 pycom02g04890 pycom02g05510 pycom02g05520 pycom02g05600 pycom02g05930 pycom02g06000 pycom02g06010 pycom03g03800 pycom03g03860 pycom03g03880 pycom03g03890 pycom03g03910 pycom03g03920 pycom03g04200 pycom03g04290 pycom03g04300 pycom03g04310 pycom03g04320 pycom03g09260 pycom04g10150 pycom04g10160 pycom04g10170 pycom05g16180 pycom05g16190 pycom05g16240 pycom05g21980 pycom05g21990 pycom07g02280 pycom11g03800 pycom11g03810 pycom11g04080 pycom11g04140 pycom11g04150 pycom11g04160 pycom11g04570 pycom11g04580 pycom11g04590 pycom11g04610 pycom12g12470 pycom12g12490 pycom13g22050
rosa_chinensis RchiOBHm_Chr1g0317761 RchiOBHm_Chr1g0317821 RchiOBHm_Chr1g0317831 RchiOBHm_Chr1g0317871 RchiOBHm_Chr1g0350501 RchiOBHm_Chr2g0107631 RchiOBHm_Chr3g0452091 RchiOBHm_Chr3g0464001 RchiOBHm_Chr3g0464281 RchiOBHm_Chr3g0466331 RchiOBHm_Chr3g0467341 RchiOBHm_Chr3g0467381 RchiOBHm_Chr3g0467731 RchiOBHm_Chr3g0468291 RchiOBHm_Chr3g0468321 RchiOBHm_Chr3g0468341 RchiOBHm_Chr3g0468391 RchiOBHm_Chr3g0468411 RchiOBHm_Chr3g0468571 RchiOBHm_Chr3g0468591 RchiOBHm_Chr3g0490721 RchiOBHm_Chr3g0490751 RchiOBHm_Chr3g0490761 RchiOBHm_Chr3g0490771 RchiOBHm_Chr3g0490951 RchiOBHm_Chr3g0491001 RchiOBHm_Chr3g0491011 RchiOBHm_Chr4g0412461 RchiOBHm_Chr4g0414161 RchiOBHm_Chr4g0414181 RchiOBHm_Chr4g0414191 RchiOBHm_Chr4g0414281 RchiOBHm_Chr4g0414441 RchiOBHm_Chr4g0414521 RchiOBHm_Chr4g0414531 RchiOBHm_Chr4g0417011 RchiOBHm_Chr4g0417021 RchiOBHm_Chr4g0417041 RchiOBHm_Chr4g0417071 RchiOBHm_Chr4g0417101 RchiOBHm_Chr4g0417531 RchiOBHm_Chr4g0417641 RchiOBHm_Chr4g0417651 RchiOBHm_Chr4g0417701 RchiOBHm_Chr4g0417731 RchiOBHm_Chr4g0417741 RchiOBHm_Chr4g0417781 RchiOBHm_Chr4g0418751 RchiOBHm_Chr4g0418791 RchiOBHm_Chr4g0418861 RchiOBHm_Chr4g0418881 RchiOBHm_Chr4g0418901 RchiOBHm_Chr4g0422451 RchiOBHm_Chr4g0422461 RchiOBHm_Chr4g0422471 RchiOBHm_Chr4g0422541 RchiOBHm_Chr4g0422561 RchiOBHm_Chr4g0422591 RchiOBHm_Chr4g0422651 RchiOBHm_Chr4g0422661 RchiOBHm_Chr5g0003251 RchiOBHm_Chr5g0003261 RchiOBHm_Chr5g0055871 RchiOBHm_Chr7g0204701 RchiOBHm_Chr7g0204741
rosa_laevigata RLG00000007607 RLG00000007932 RLG00000017606 RLG00000024418 RLG00000025629 RLG00000030586
rosa_multiflora Rmu_co7959167.1_g000001 Rmu_co8021330.1_g000001 Rmu_co8132128.1_g000001 Rmu_co8224744.1_g000001 Rmu_co8281865.1_g000001 Rmu_co8298487.1_g000001 Rmu_co8319035.1_g000001 Rmu_co8380035.1_g000001 Rmu_co8385371.1_g000001 Rmu_co8398173.1_g000001 Rmu_co8423363.1_g000001 Rmu_co8438275.1_g000001 Rmu_co8474729.1_g000001 Rmu_sc0000057.1_g000008 Rmu_sc0000350.1_g000023 Rmu_sc0000480.1_g000005 Rmu_sc0000654.1_g000021 Rmu_sc0000654.1_g000029 Rmu_sc0000654.1_g000032 Rmu_sc0000654.1_g000041 Rmu_sc0000654.1_g000045 Rmu_sc0000772.1_g000002 Rmu_sc0000772.1_g000041 Rmu_sc0000808.1_g000040 Rmu_sc0000830.1_g000062 Rmu_sc0000830.1_g000065 Rmu_sc0000830.1_g000072 Rmu_sc0000830.1_g000073 Rmu_sc0000935.1_g000020 Rmu_sc0000935.1_g000024 Rmu_sc0000935.1_g000026 Rmu_sc0000935.1_g000027 Rmu_sc0000935.1_g000031 Rmu_sc0000935.1_g000033 Rmu_sc0000962.1_g000033 Rmu_sc0000962.1_g000036 Rmu_sc0000962.1_g000063 Rmu_sc0000962.1_g000064 Rmu_sc0000962.1_g000065 Rmu_sc0001029.1_g000007 Rmu_sc0001063.1_g000014 Rmu_sc0001149.1_g000010 Rmu_sc0001149.1_g000011 Rmu_sc0001358.1_g000009 Rmu_sc0001448.1_g000003 Rmu_sc0001448.1_g000004 Rmu_sc0001729.1_g000005 Rmu_sc0001729.1_g000007 Rmu_sc0001729.1_g000020 Rmu_sc0001729.1_g000023 Rmu_sc0001793.1_g000015 Rmu_sc0002494.1_g000018 Rmu_sc0002494.1_g000019 Rmu_sc0002604.1_g000022 Rmu_sc0002922.1_g000011 Rmu_sc0003008.1_g000009 Rmu_sc0003221.1_g000061 Rmu_sc0003221.1_g000062 Rmu_sc0003459.1_g000014 Rmu_sc0003480.1_g000015 Rmu_sc0003541.1_g000016 Rmu_sc0003541.1_g000020 Rmu_sc0004035.1_g000001 Rmu_sc0004035.1_g000005 Rmu_sc0004035.1_g000011 Rmu_sc0004142.1_g000004 Rmu_sc0004142.1_g000010 Rmu_sc0004353.1_g000008 Rmu_sc0004616.1_g000009 Rmu_sc0004616.1_g000010 Rmu_sc0005231.1_g000004 Rmu_sc0006380.1_g000025 Rmu_sc0006492.1_g000010 Rmu_sc0006895.1_g000001 Rmu_sc0006895.1_g000002 Rmu_sc0006895.1_g000005 Rmu_sc0007034.1_g000004 Rmu_sc0007104.1_g000006 Rmu_sc0008990.1_g000003 Rmu_sc0008990.1_g000004 Rmu_sc0009106.1_g000003 Rmu_sc0009516.1_g000002 Rmu_sc0009516.1_g000003 Rmu_sc0009516.1_g000004 Rmu_sc0009516.1_g000005 Rmu_sc0009645.1_g000001 Rmu_sc0010274.1_g000001 Rmu_sc0010274.1_g000002 Rmu_sc0010419.1_g000003 Rmu_sc0010917.1_g000017 Rmu_sc0011213.1_g000001 Rmu_sc0011228.1_g000007 Rmu_sc0011538.1_g000011 Rmu_sc0011538.1_g000014 Rmu_sc0011538.1_g000015 Rmu_sc0012211.1_g000006 Rmu_sc0012351.1_g000003 Rmu_sc0012351.1_g000005 Rmu_sc0012915.1_g000002 Rmu_sc0013088.1_g000001 Rmu_sc0013459.1_g000001 Rmu_sc0013765.1_g000004 Rmu_sc0013765.1_g000005 Rmu_sc0014003.1_g000012 Rmu_sc0014003.1_g000014 Rmu_sc0014698.1_g000001 Rmu_sc0015740.1_g000001 Rmu_sc0016429.1_g000003 Rmu_sc0018885.1_g000001 Rmu_sc0020345.1_g000001 Rmu_sc0027791.1_g000001 Rmu_sc0037325.1_g000001 Rmu_ssc0000010.1_g000024 Rmu_ssc0000010.1_g000025 Rmu_ssc0000083.1_g000021 Rmu_ssc0000340.1_g000002 Rmu_ssc0000386.1_g000002 Rmu_ssc0000386.1_g000024 Rmu_ssc0000386.1_g000025 Rmu_ssc0000386.1_g000034 Rmu_ssc0000386.1_g000037 Rmu_ssc0000477.1_g000001
rosa_roxburghii Rroxscaffold_161G00448010 Rroxscaffold_164G00436080 Rroxscaffold_1G00024500 Rroxscaffold_2G00124290 Rroxscaffold_3G00222940 Rroxscaffold_3G00227440 Rroxscaffold_4G00304810 Rroxscaffold_4G00330180 Rroxscaffold_4G00330200 Rroxscaffold_5G00356620 Rroxscaffold_5G00358170 Rroxscaffold_5G00360880 Rroxscaffold_5G00361220 Rroxscaffold_5G00361950 Rroxscaffold_5G00361960 Rroxscaffold_5G00361990 Rroxscaffold_5G00362370 Rroxscaffold_5G00364540 Rroxscaffold_5G00364550 Rroxscaffold_5G00364580 Rroxscaffold_5G00364600 Rroxscaffold_6G00393290 Rroxscaffold_6G00412680 Rroxscaffold_6G00412790 Rroxscaffold_6G00413470 Rroxscaffold_6G00413720 Rroxscaffold_6G00416070 Rroxscaffold_7G00205400
rosa_rugosa Rorug01G0017300 Rorug01G0017400 Rorug01G0018000 Rorug01G0018100 Rorug01G0211500 Rorug02G0638200 Rorug03G0070000 Rorug03G0071200 Rorug03G0081000 Rorug03G0086500 Rorug03G0089300 Rorug03G0095300 Rorug03G0096000 Rorug03G0096000 Rorug04G0055000 Rorug04G0078300 Rorug04G0104100.1 Rorug04G0113800 Rorug04G0126700 Rorug04G0128000 Rorug04G0145900 Rorug04G0148700 Rorug04G0149100 Rorug04G0149100 Rorug04G0149200 Rorug04G0149300 Rorug04G0154900 Rorug04G0180400 Rorug04G0180500 Rorug04G0180700 Rorug04G0180800 Rorug04G0401500 Rorug04G0402100 Rorug05G0288600 Rorug05G0334100 Rorug07G0176400
rosa_samantha Rh1DG043200 Rh1DG043500 Rh1DG043900 Rh1DG222800 Rh3CG039900 Rh3CG156200 Rh3CG328500 Rh3CG328800 Rh3DG165000 Rh4AG208400 Rh4BG205600 Rh4BG213900 Rh4BG243900 Rh4CG198800 Rh4DG168600 Rh4DG180100 Rh4DG180300 Rh4DG180600 Rh4DG181200 Rh4DG181600 Rh4DG181700 Rh4DG183700 Rh4DG184000 Rh4DG184400 Rh4DG184700 Rh4DG206100 Rh4DG206200 Rh4DG206300 Rh4DG215600 Rh4DG238700 Rh4DG238900 Rh5DG390300
rosa_wichuraiana Rw0G005050 Rw0G009260 Rw0G009280 Rw0G015600 Rw0G023570 Rw1G002140 Rw1G002170 Rw1G002210 Rw1G002240 Rw1G019500 Rw2G015490 Rw3G003020 Rw3G010900 Rw3G012030 Rw3G012790 Rw3G013050 Rw3G013540 Rw3G013640 Rw3G013650 Rw3G026050 Rw3G026070 Rw4G015740 Rw4G015790 Rw4G015910 Rw4G015930 Rw4G015950 Rw4G017900 Rw4G017930 Rw4G018440 Rw4G018450 Rw4G018530 Rw4G020720 Rw4G020760 Rw5G019250 Rw5G034370 Rw7G018700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 520
AccB1I GGYRCC 1 cut(s) 1943
AccI GTMKAC 1 cut(s) 2518
AciI CCGC 7 cut(s) 14, 308, 1370, 2008, 2529, 2611, 3003
AclWI GGATC 6 cut(s) 230, 258, 677, 955, 1209, 2180
AcoI YGGCCR 4 cut(s) 320, 450, 1003, 1898
AcsI RAATTY 7 cut(s) 877, 1180, 1390, 1823, 2955, 2996, 3276
AcuI CTGAAG 1 cut(s) 1651
AcyI GRCGYC 3 cut(s) 732, 2604, 2663
AfaI GTAC 8 cut(s) 165, 318, 503, 772, 784, 1321, 1884, 2503
AflIII ACRYGT 7 cut(s) 1225, 1348, 1588, 1756, 1879, 2056, 2089
AjnI CCWGG 2 cut(s) 1000, 1690
AjuI GAANNNNNNNTTGG 4 cut(s) 354, 386, 1775, 1807
AleI CACNNNNGTG 1 cut(s) 1668
Alw21I GWGCWC 1 cut(s) 2862
Alw26I GTCTC 5 cut(s) 1579, 1976, 2393, 2756, 2946
AlwI GGATC 6 cut(s) 230, 258, 677, 955, 1209, 2180
AlwNI CAGNNNCTG 1 cut(s) 3188
ApaI GGGCCC 1 cut(s) 2250
ApeKI GCWGC 7 cut(s) 1854, 1857, 1921, 2256, 2400, 3230, 3268
ApoI RAATTY 7 cut(s) 877, 1180, 1390, 1823, 2955, 2996, 3276
ArsI GACNNNNNNTTYG 2 cut(s) 332, 364
AseI ATTAAT 3 cut(s) 281, 1863, 3260
Asp700I GAANNNNTTC 1 cut(s) 2022
AspLEI GCGC 1 cut(s) 1290
AspS9I GGNCC 9 cut(s) 642, 1688, 2105, 2246, 2247, 2843, 3185, 3195, 3247
AsuC2I CCSGG 1 cut(s) 468
AsuHPI GGTGA 6 cut(s) 67, 879, 1046, 1975, 2809, 3109
AvaII GGWCC 4 cut(s) 642, 1688, 2105, 3247
BaeGI GKGCMC 1 cut(s) 2250
BalI TGGCCA 2 cut(s) 452, 1005
BanI GGYRCC 1 cut(s) 1943
BanII GRGCYC 3 cut(s) 2250, 2535, 2862
BauI CACGAG 1 cut(s) 1251
BbsI GAAGAC 1 cut(s) 2663
Bbv12I GWGCWC 1 cut(s) 2862
BbvI GCAGC 6 cut(s) 1866, 1869, 1908, 2243, 2387, 3217
BceAI ACGGC 3 cut(s) 335, 2676, 2786
BcgI CGANNNNNNTGC 4 cut(s) 570, 604, 3212, 3246
BciT130I CCWGG 2 cut(s) 1002, 1692
BciVI GTATCC 1 cut(s) 1165
BclI TGATCA 3 cut(s) 1306, 1575, 2205
BcnI CCSGG 1 cut(s) 468
BcoDI GTCTC 5 cut(s) 1579, 1976, 2393, 2756, 2946
BfaI CTAG 8 cut(s) 1424, 1751, 1886, 2159, 2339, 2571, 2576, 2993
BfmI CTRYAG 1 cut(s) 1922
BfuAI ACCTGC 1 cut(s) 520
BfuI GTATCC 1 cut(s) 1165
BglI GCCNNNNNGGC 1 cut(s) 578
BglII AGATCT 1 cut(s) 1949
BisI GCNGC 9 cut(s) 15, 1855, 1858, 1922, 2008, 2257, 2401, 3231, 3269
BlsI GCNGC 9 cut(s) 16, 1856, 1859, 1923, 2009, 2258, 2402, 3232, 3270
Bme1390I CCNGG 3 cut(s) 468, 1002, 1692
Bme18I GGWCC 4 cut(s) 642, 1688, 2105, 3247
BmgT120I GGNCC 9 cut(s) 642, 1688, 2105, 2246, 2247, 2843, 3185, 3195, 3247
BmiI GGNNCC 5 cut(s) 1689, 1945, 2248, 2534, 3248
BmrFI CCNGG 3 cut(s) 468, 1002, 1692
BmrI ACTGGG 2 cut(s) 1311, 2042
BmsI GCATC 9 cut(s) 73, 191, 248, 253, 275, 289, 590, 756, 2342
BmuI ACTGGG 2 cut(s) 1311, 2042
BpiI GAAGAC 1 cut(s) 2663
BpmI CTGGAG 1 cut(s) 56
Bpu10I CCTNAGC 2 cut(s) 978, 2931
BpuEI CTTGAG 7 cut(s) 239, 1603, 2699, 2921, 3065, 3068, 3143
BpuMI CCSGG 1 cut(s) 468
Bsa29I ATCGAT 1 cut(s) 2365
BsaAI YACGTR 1 cut(s) 1349
BsaBI GATNNNNATC 1 cut(s) 2171
BsaHI GRCGYC 3 cut(s) 732, 2604, 2663
BsaI GGTCTC 1 cut(s) 2393
BsaJI CCNNGG 3 cut(s) 573, 1086, 3174
BsaXI ACNNNNNCTCC 2 cut(s) 3081, 3111
Bse1I ACTGG 2 cut(s) 1317, 2037
Bse3DI GCAATG 5 cut(s) 685, 2191, 2328, 2698, 3225
Bse8I GATNNNNATC 1 cut(s) 2171
BseBI CCWGG 2 cut(s) 1002, 1692
BseCI ATCGAT 1 cut(s) 2365
BseDI CCNNGG 3 cut(s) 573, 1086, 3174
BseJI GATNNNNATC 1 cut(s) 2171
BseMI GCAATG 5 cut(s) 685, 2191, 2328, 2698, 3225
BseMII CTCAG 7 cut(s) 992, 1206, 1484, 1514, 2865, 3012, 3195
BseNI ACTGG 2 cut(s) 1317, 2037
BseRI GAGGAG 6 cut(s) 1811, 2381, 2525, 2696, 2870, 3146
BseSI GKGCMC 1 cut(s) 2250
BseX3I CGGCCG 1 cut(s) 320
BseXI GCAGC 6 cut(s) 1866, 1869, 1908, 2243, 2387, 3217
BseYI CCCAGC 2 cut(s) 1622, 2949
BsgI GTGCAG 2 cut(s) 2242, 2386
Bsh1285I CGRYCG 1 cut(s) 323
BshNI GGYRCC 1 cut(s) 1943
BshVI ATCGAT 1 cut(s) 2365
BsiEI CGRYCG 1 cut(s) 323
BsiHKAI GWGCWC 1 cut(s) 2862
BsiSI CCGG 4 cut(s) 323, 356, 467, 1897
BslFI GGGAC 6 cut(s) 719, 1298, 1701, 2579, 3135, 3260
BsmAI GTCTC 5 cut(s) 1579, 1976, 2393, 2756, 2946
BsmFI GGGAC 6 cut(s) 719, 1298, 1701, 2579, 3135, 3260
BsmI GAATGC 3 cut(s) 110, 468, 574
Bso31I GGTCTC 1 cut(s) 2393
Bsp120I GGGCCC 1 cut(s) 2246
Bsp1286I GDGCHC 3 cut(s) 2250, 2535, 2862
BspACI CCGC 7 cut(s) 14, 308, 1370, 2008, 2529, 2611, 3003
BspCNI CTCAG 7 cut(s) 991, 1207, 1485, 1515, 2866, 3013, 3194
BspDI ATCGAT 1 cut(s) 2365
BspLI GGNNCC 5 cut(s) 1689, 1945, 2248, 2534, 3248
BspMAI CTGCAG 1 cut(s) 1926
BspMI ACCTGC 1 cut(s) 520
BspPI GGATC 6 cut(s) 230, 258, 677, 955, 1209, 2180
BspQI GCTCTTC 1 cut(s) 3021
BspT107I GGYRCC 1 cut(s) 1943
BspTNI GGTCTC 1 cut(s) 2393
BsrDI GCAATG 5 cut(s) 685, 2191, 2328, 2698, 3225
BsrI ACTGG 2 cut(s) 1317, 2037
BssECI CCNNGG 3 cut(s) 573, 1086, 3174
BssNI GRCGYC 3 cut(s) 732, 2604, 2663
BssSI CACGAG 1 cut(s) 1251
BssT1I CCWWGG 3 cut(s) 573, 1086, 3174
Bst2BI CACGAG 1 cut(s) 1251
Bst2UI CCWGG 2 cut(s) 1002, 1692
Bst4CI ACNGT 2 cut(s) 1115, 2835
Bst6I CTCTTC 6 cut(s) 149, 1359, 1518, 1757, 1796, 3021
BstACI GRCGYC 3 cut(s) 732, 2604, 2663
BstAPI GCANNNNNTGC 1 cut(s) 1921
BstBAI YACGTR 1 cut(s) 1349
BstC8I GCNNGC 5 cut(s) 1007, 1472, 1817, 2531, 3012
BstENI CCTNNNNNAGG 1 cut(s) 3158
BstHHI GCGC 1 cut(s) 1290
BstMAI GTCTC 5 cut(s) 1579, 1976, 2393, 2756, 2946
BstMCI CGRYCG 1 cut(s) 323
BstMWI GCNNNNNNNGC 7 cut(s) 38, 83, 578, 1784, 1921, 2610, 2959
BstNI CCWGG 2 cut(s) 1002, 1692
BstNSI RCATGY 6 cut(s) 1229, 1592, 1760, 1883, 2060, 3014
BstSCI CCNGG 3 cut(s) 466, 1000, 1690
BstSFI CTRYAG 1 cut(s) 1922
BstSLI GKGCMC 1 cut(s) 2250
BstV1I GCAGC 6 cut(s) 1866, 1869, 1908, 2243, 2387, 3217
BstV2I GAAGAC 1 cut(s) 2663
BstX2I RGATCY 2 cut(s) 250, 1949
BstYI RGATCY 2 cut(s) 250, 1949
BstZI CGGCCG 1 cut(s) 320
Bsu15I ATCGAT 1 cut(s) 2365
BsuI GTATCC 1 cut(s) 1165
BsuTUI ATCGAT 1 cut(s) 2365
BtsI GCAGTG 3 cut(s) 48, 2002, 2809
BtsIMutI CAGTG 8 cut(s) 48, 504, 1490, 1520, 1675, 2002, 2030, 2809
BveI ACCTGC 1 cut(s) 520
Cac8I GCNNGC 5 cut(s) 1007, 1472, 1817, 2531, 3012
CaiI CAGNNNCTG 1 cut(s) 3188
CfoI GCGC 1 cut(s) 1290
Cfr13I GGNCC 9 cut(s) 642, 1688, 2105, 2246, 2247, 2843, 3185, 3195, 3247
ClaI ATCGAT 1 cut(s) 2365
CseI GACGC 4 cut(s) 721, 2422, 2593, 2652
Csp6I GTAC 8 cut(s) 164, 317, 502, 771, 783, 1320, 1883, 2502
CviQI GTAC 8 cut(s) 164, 317, 502, 771, 783, 1320, 1883, 2502
DraI TTTAAA 3 cut(s) 861, 1185, 1828
EaeI YGGCCR 4 cut(s) 320, 450, 1003, 1898
EagI CGGCCG 1 cut(s) 320
Eam1104I CTCTTC 6 cut(s) 149, 1359, 1518, 1757, 1796, 3021
EarI CTCTTC 6 cut(s) 149, 1359, 1518, 1757, 1796, 3021
Ecl136II GAGCTC 1 cut(s) 2860
EclXI CGGCCG 1 cut(s) 320
Eco130I CCWWGG 3 cut(s) 573, 1086, 3174
Eco147I AGGCCT 2 cut(s) 1893, 2288
Eco24I GRGCYC 3 cut(s) 2250, 2535, 2862
Eco31I GGTCTC 1 cut(s) 2393
Eco47I GGWCC 4 cut(s) 642, 1688, 2105, 3247
Eco52I CGGCCG 1 cut(s) 320
Eco53kI GAGCTC 1 cut(s) 2860
Eco57I CTGAAG 1 cut(s) 1651
EcoICRI GAGCTC 1 cut(s) 2860
EcoNI CCTNNNNNAGG 1 cut(s) 3158
EcoO109I RGGNCCY 3 cut(s) 1688, 3185, 3247
EcoRI GAATTC 2 cut(s) 1390, 2996
EcoRII CCWGG 2 cut(s) 1000, 1690
EcoT14I CCWWGG 3 cut(s) 573, 1086, 3174
EcoT22I ATGCAT 2 cut(s) 241, 268
EcoT38I GRGCYC 3 cut(s) 2250, 2535, 2862
ErhI CCWWGG 3 cut(s) 573, 1086, 3174
FaqI GGGAC 6 cut(s) 719, 1298, 1701, 2579, 3135, 3260
FauI CCCGC 2 cut(s) 1363, 2522
FauNDI CATATG 2 cut(s) 1011, 2133
FbaI TGATCA 3 cut(s) 1306, 1575, 2205
FblI GTMKAC 1 cut(s) 2518
Fnu4HI GCNGC 9 cut(s) 15, 1855, 1858, 1922, 2008, 2257, 2401, 3231, 3269
FriOI GRGCYC 3 cut(s) 2250, 2535, 2862
Fsp4HI GCNGC 9 cut(s) 15, 1855, 1858, 1922, 2008, 2257, 2401, 3231, 3269
FspBI CTAG 8 cut(s) 1424, 1751, 1886, 2159, 2339, 2571, 2576, 2993
GlaI GCGC 1 cut(s) 1289
GluI GCNGC 9 cut(s) 15, 1855, 1858, 1922, 2008, 2257, 2401, 3231, 3269
GsaI CCCAGC 2 cut(s) 1626, 2953
GsuI CTGGAG 1 cut(s) 56
HapII CCGG 4 cut(s) 323, 356, 467, 1897
HgaI GACGC 4 cut(s) 721, 2422, 2593, 2652
HhaI GCGC 1 cut(s) 1290
Hin1I GRCGYC 3 cut(s) 732, 2604, 2663
Hin6I GCGC 1 cut(s) 1288
HinP1I GCGC 1 cut(s) 1288
HpaII CCGG 4 cut(s) 323, 356, 467, 1897
HphI GGTGA 6 cut(s) 67, 879, 1046, 1975, 2809, 3109
Hpy166II GTNNAC 3 cut(s) 317, 502, 2519
Hpy188I TCNGA 8 cut(s) 125, 394, 592, 673, 876, 1216, 1267, 2412
Hpy8I GTNNAC 3 cut(s) 317, 502, 2519
Hpy99I CGWCG 1 cut(s) 129
HpyAV CCTTC 9 cut(s) 41, 154, 369, 827, 1493, 1777, 1883, 2012, 2878
HpyCH4III ACNGT 2 cut(s) 1115, 2835
HpyCH4IV ACGT 3 cut(s) 127, 1348, 2089
HpyF10VI GCNNNNNNNGC 7 cut(s) 38, 83, 578, 1784, 1921, 2610, 2959
HpySE526I ACGT 3 cut(s) 127, 1348, 2089
Hsp92I GRCGYC 3 cut(s) 732, 2604, 2663
HspAI GCGC 1 cut(s) 1288
Ksp22I TGATCA 3 cut(s) 1306, 1575, 2205
LguI GCTCTTC 1 cut(s) 3021
LmnI GCTCC 4 cut(s) 2096, 2538, 2857, 2865
Lsp1109I GCAGC 6 cut(s) 1866, 1869, 1908, 2243, 2387, 3217
LweI GCATC 9 cut(s) 73, 191, 248, 253, 275, 289, 590, 756, 2342
MaeI CTAG 8 cut(s) 1424, 1751, 1886, 2159, 2339, 2571, 2576, 2993
MaeII ACGT 3 cut(s) 127, 1348, 2089
MaeIII GTNAC 1 cut(s) 1081
MfeI CAATTG 5 cut(s) 942, 1395, 1637, 1721, 2011
MflI RGATCY 2 cut(s) 250, 1949
MhlI GDGCHC 3 cut(s) 2250, 2535, 2862
MlsI TGGCCA 2 cut(s) 452, 1005
MluNI TGGCCA 2 cut(s) 452, 1005
MlyI GAGTC 5 cut(s) 335, 1277, 2105, 2171, 3173
MmeI TCCRAC 6 cut(s) 148, 256, 594, 988, 2325, 2336
Mox20I TGGCCA 2 cut(s) 452, 1005
Mph1103I ATGCAT 2 cut(s) 241, 268
MroXI GAANNNNTTC 1 cut(s) 2022
MscI TGGCCA 2 cut(s) 452, 1005
MslI CAYNNNNRTG 4 cut(s) 234, 1668, 1878, 2654
Msp20I TGGCCA 2 cut(s) 452, 1005
MspA1I CMGCKG 3 cut(s) 1622, 3003, 3271
MspI CCGG 4 cut(s) 323, 356, 467, 1897
MspR9I CCNGG 3 cut(s) 468, 1002, 1692
MunI CAATTG 5 cut(s) 942, 1395, 1637, 1721, 2011
Mva1269I GAATGC 3 cut(s) 110, 468, 574
MvaI CCWGG 2 cut(s) 1002, 1692
MwoI GCNNNNNNNGC 7 cut(s) 38, 83, 578, 1784, 1921, 2610, 2959
NciI CCSGG 1 cut(s) 468
NdeI CATATG 2 cut(s) 1011, 2133
NlaIV GGNNCC 5 cut(s) 1689, 1945, 2248, 2534, 3248
NsiI ATGCAT 2 cut(s) 241, 268
NspI RCATGY 6 cut(s) 1229, 1592, 1760, 1883, 2060, 3014
OliI CACNNNNGTG 1 cut(s) 1668
PaeI GCATGC 1 cut(s) 3014
PceI AGGCCT 2 cut(s) 1893, 2288
PciI ACATGT 5 cut(s) 1225, 1588, 1756, 1879, 2056
PciSI GCTCTTC 1 cut(s) 3021
PctI GAATGC 3 cut(s) 110, 468, 574
PdmI GAANNNNTTC 1 cut(s) 2022
PflFI GACNNNGTC 1 cut(s) 2662
PkrI GCNGC 9 cut(s) 16, 1856, 1859, 1923, 2009, 2258, 2402, 3232, 3270
PleI GAGTC 5 cut(s) 335, 1276, 2105, 2170, 3173
PpsI GAGTC 5 cut(s) 335, 1276, 2105, 2170, 3173
Ppu21I YACGTR 1 cut(s) 1349
PpuMI RGGWCCY 2 cut(s) 1688, 3247
PscI ACATGT 5 cut(s) 1225, 1588, 1756, 1879, 2056
PshBI ATTAAT 3 cut(s) 281, 1863, 3260
Psp124BI GAGCTC 1 cut(s) 2862
Psp5II RGGWCCY 2 cut(s) 1688, 3247
Psp6I CCWGG 2 cut(s) 1000, 1690
PspFI CCCAGC 2 cut(s) 1622, 2949
PspGI CCWGG 2 cut(s) 1000, 1690
PspN4I GGNNCC 5 cut(s) 1689, 1945, 2248, 2534, 3248
PspOMI GGGCCC 1 cut(s) 2246
PspPI GGNCC 9 cut(s) 642, 1688, 2105, 2246, 2247, 2843, 3185, 3195, 3247
PspPPI RGGWCCY 2 cut(s) 1688, 3247
PstI CTGCAG 1 cut(s) 1926
PstNI CAGNNNCTG 1 cut(s) 3188
PsuI RGATCY 2 cut(s) 250, 1949
PsyI GACNNNGTC 1 cut(s) 2662
PvuII CAGCTG 2 cut(s) 1622, 3271
RsaI GTAC 8 cut(s) 165, 318, 503, 772, 784, 1321, 1884, 2503
RsaNI GTAC 8 cut(s) 164, 317, 502, 771, 783, 1320, 1883, 2502
RseI CAYNNNNRTG 4 cut(s) 234, 1668, 1878, 2654
SacI GAGCTC 1 cut(s) 2862
SapI GCTCTTC 1 cut(s) 3021
SatI GCNGC 9 cut(s) 15, 1855, 1858, 1922, 2008, 2257, 2401, 3231, 3269
Sau96I GGNCC 9 cut(s) 642, 1688, 2105, 2246, 2247, 2843, 3185, 3195, 3247
SchI GAGTC 5 cut(s) 335, 1277, 2105, 2171, 3173
ScrFI CCNGG 3 cut(s) 468, 1002, 1692
SduI GDGCHC 3 cut(s) 2250, 2535, 2862
SfaNI GCATC 9 cut(s) 73, 191, 248, 253, 275, 289, 590, 756, 2342
SfcI CTRYAG 1 cut(s) 1922
SinI GGWCC 4 cut(s) 642, 1688, 2105, 3247
SmiI ATTTAAAT 2 cut(s) 1185, 1828
SmiMI CAYNNNNRTG 4 cut(s) 234, 1668, 1878, 2654
SmlI CTYRAG 7 cut(s) 254, 1582, 2678, 2936, 3047, 3080, 3158
SmoI CTYRAG 7 cut(s) 254, 1582, 2678, 2936, 3047, 3080, 3158
SphI GCATGC 1 cut(s) 3014
SseBI AGGCCT 2 cut(s) 1893, 2288
SsiI CCGC 7 cut(s) 14, 308, 1370, 2008, 2529, 2611, 3003
SspI AATATT 2 cut(s) 1051, 2445
SspMI CTAG 8 cut(s) 1424, 1751, 1886, 2159, 2339, 2571, 2576, 2993
SstI GAGCTC 1 cut(s) 2862
StuI AGGCCT 2 cut(s) 1893, 2288
StyD4I CCNGG 3 cut(s) 466, 1000, 1690
StyI CCWWGG 3 cut(s) 573, 1086, 3174
SwaI ATTTAAAT 2 cut(s) 1185, 1828
TaaI ACNGT 2 cut(s) 1115, 2835
TaiI ACGT 3 cut(s) 130, 1351, 2092
TaqI TCGA 7 cut(s) 531, 814, 1222, 2061, 2165, 2365, 3222
TatI WGTACW 1 cut(s) 1882
TauI GCSGC 2 cut(s) 17, 2010
TscAI CASTG 8 cut(s) 48, 504, 1497, 1527, 1675, 2009, 2037, 2816
TseI GCWGC 7 cut(s) 1854, 1857, 1921, 2256, 2400, 3230, 3268
TspGWI ACGGA 5 cut(s) 1192, 1944, 2186, 2468, 2744
TspRI CASTG 8 cut(s) 48, 504, 1497, 1527, 1675, 2009, 2037, 2816
Tth111I GACNNNGTC 1 cut(s) 2662
VpaK11BI GGWCC 4 cut(s) 642, 1688, 2105, 3247
VspI ATTAAT 3 cut(s) 281, 1863, 3260
XagI CCTNNNNNAGG 1 cut(s) 3158
XapI RAATTY 7 cut(s) 877, 1180, 1390, 1823, 2955, 2996, 3276
XbaI TCTAGA 3 cut(s) 1423, 1750, 2338
XceI RCATGY 6 cut(s) 1229, 1592, 1760, 1883, 2060, 3014
XcmI CCANNNNNNNNNTGG 1 cut(s) 998
XmiI GTMKAC 1 cut(s) 2518
XmnI GAANNNNTTC 1 cut(s) 2022
XspI CTAG 8 cut(s) 1424, 1751, 1886, 2159, 2339, 2571, 2576, 2993
Zsp2I ATGCAT 2 cut(s) 241, 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.