disease resistance
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Rx_N | PF18052 | 12 - 97 | 1.1e-20 | Rx N-terminal domain |
| NB-ARC | PF00931 | 180 - 355 | 1.2e-38 | NB-ARC domain |
| AAA_22 | PF13401 | 202 - 319 | 1e-05 | AAA domain |
| WHD_DRP | PF23559 | 440 - 510 | 3.3e-23 | Disease resistance protein Winged helix domain |
| LRR_14 | PF23598 | 552 - 835 | 1.1e-24 | Leucine-rich repeat region |
| LRR_R13L1-DRL21 | PF25019 | 666 - 796 | 2.7e-26 | R13L1/DRL21 LRRs |
| LRR_14 | PF23598 | 1070 - 1173 | 7.3e-08 | Leucine-rich repeat region |
| LRR_R13L1-DRL21 | PF25019 | 1089 - 1146 | 8.8e-07 | R13L1/DRL21 LRRs |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1344, 1803 |
| AarI | CACCTGC | 1 cut(s) | 1118 |
| AatII | GACGTC | 1 cut(s) | 2831 |
| AbsI | CCTCGAGG | 1 cut(s) | 2363 |
| Acc36I | ACCTGC | 2 cut(s) | 1118, 3409 |
| AccB1I | GGYRCC | 1 cut(s) | 2688 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3530 |
| AccBSI | CCGCTC | 1 cut(s) | 3492 |
| AccII | CGCG | 1 cut(s) | 1674 |
| AccIII | TCCGGA | 1 cut(s) | 3328 |
| AciI | CCGC | 5 cut(s) | 750, 958, 2327, 2457, 3492 |
| AclWI | GGATC | 4 cut(s) | 210, 761, 1775, 3043 |
| AcsI | RAATTY | 8 cut(s) | 68, 574, 1219, 1429, 1858, 1895, 2210, 2243 |
| AcuI | CTGAAG | 6 cut(s) | 131, 2636, 2915, 3341, 3410, 3429 |
| AcyI | GRCGYC | 2 cut(s) | 268, 2828 |
| AfaI | GTAC | 6 cut(s) | 480, 524, 1134, 1210, 2175, 2923 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 1619, 1764, 2206, 2906, 2907, 3530 |
| AflII | CTTAAG | 1 cut(s) | 2723 |
| AflIII | ACRYGT | 1 cut(s) | 1534 |
| AhlI | ACTAGT | 1 cut(s) | 2750 |
| AjnI | CCWGG | 5 cut(s) | 633, 995, 2252, 2901, 3043 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 2109, 2141, 3138, 3170 |
| AleI | CACNNNNGTG | 1 cut(s) | 3069 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2835, 2867 |
| Alw21I | GWGCWC | 4 cut(s) | 309, 2352, 2407, 2763 |
| Alw26I | GTCTC | 5 cut(s) | 80, 2379, 2722, 2786, 3255 |
| AlwI | GGATC | 4 cut(s) | 210, 761, 1775, 3043 |
| Ama87I | CYCGRG | 2 cut(s) | 674, 2363 |
| Aor13HI | TCCGGA | 1 cut(s) | 3328 |
| AoxI | GGCC | 6 cut(s) | 428, 631, 2182, 2848, 3236, 3493 |
| ApoI | RAATTY | 8 cut(s) | 68, 574, 1219, 1429, 1858, 1895, 2210, 2243 |
| AseI | ATTAAT | 1 cut(s) | 2160 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 261, 990, 1246, 2184, 3264 |
| AspLEI | GCGC | 2 cut(s) | 1038, 1674 |
| AspS9I | GGNCC | 2 cut(s) | 2848, 3494 |
| AsuC2I | CCSGG | 1 cut(s) | 3114 |
| AsuHPI | GGTGA | 7 cut(s) | 208, 1275, 1643, 2042, 2249, 3170, 3418 |
| AsuII | TTCGAA | 1 cut(s) | 729 |
| AvaI | CYCGRG | 2 cut(s) | 674, 2363 |
| BanI | GGYRCC | 1 cut(s) | 2688 |
| BanII | GRGCYC | 1 cut(s) | 2763 |
| BauI | CACGAG | 1 cut(s) | 446 |
| BbsI | GAAGAC | 2 cut(s) | 2108, 2145 |
| Bbv12I | GWGCWC | 4 cut(s) | 309, 2352, 2407, 2763 |
| BceAI | ACGGC | 1 cut(s) | 1158 |
| BciT130I | CCWGG | 5 cut(s) | 635, 997, 2254, 2903, 3045 |
| BclI | TGATCA | 3 cut(s) | 883, 1863, 2151 |
| BcnI | CCSGG | 1 cut(s) | 3114 |
| BcoDI | GTCTC | 5 cut(s) | 80, 2379, 2722, 2786, 3255 |
| BcuI | ACTAGT | 1 cut(s) | 2750 |
| BfmI | CTRYAG | 2 cut(s) | 1808, 3402 |
| BfrI | CTTAAG | 1 cut(s) | 2723 |
| BfuAI | ACCTGC | 2 cut(s) | 1118, 3409 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2701 |
| BmcAI | AGTACT | 1 cut(s) | 480 |
| Bme1390I | CCNGG | 6 cut(s) | 635, 997, 2254, 2903, 3045, 3114 |
| BmeT110I | CYCGRG | 2 cut(s) | 674, 2363 |
| BmgT120I | GGNCC | 2 cut(s) | 2848, 3494 |
| BmiI | GGNNCC | 2 cut(s) | 2690, 3344 |
| BmrFI | CCNGG | 6 cut(s) | 635, 997, 2254, 2903, 3045, 3114 |
| BmrI | ACTGGG | 2 cut(s) | 2403, 2982 |
| BmuI | ACTGGG | 2 cut(s) | 2403, 2982 |
| BpiI | GAAGAC | 2 cut(s) | 2108, 2145 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2389, 2421 |
| BpmI | CTGGAG | 1 cut(s) | 1370 |
| Bpu10I | CCTNAGC | 1 cut(s) | 3240 |
| Bpu14I | TTCGAA | 1 cut(s) | 729 |
| BpuEI | CTTGAG | 5 cut(s) | 204, 1359, 1639, 1759, 1896 |
| BpuMI | CCSGG | 1 cut(s) | 3114 |
| BsaAI | YACGTR | 1 cut(s) | 2294 |
| BsaBI | GATNNNNATC | 2 cut(s) | 882, 1285 |
| BsaHI | GRCGYC | 2 cut(s) | 268, 2828 |
| BsaI | GGTCTC | 2 cut(s) | 2786, 3255 |
| BsaJI | CCNNGG | 6 cut(s) | 27, 634, 931, 995, 1593, 2901 |
| BsaWI | WCCGGW | 2 cut(s) | 772, 3328 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 533, 563, 2835, 2865, 2982, 3012 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 1619, 1764, 2206, 2906, 2907, 3530 |
| Bse118I | RCCGGY | 1 cut(s) | 494 |
| Bse1I | ACTGG | 4 cut(s) | 42, 1712, 2409, 2977 |
| Bse3DI | GCAATG | 1 cut(s) | 3447 |
| Bse8I | GATNNNNATC | 2 cut(s) | 882, 1285 |
| BseAI | TCCGGA | 1 cut(s) | 3328 |
| BseBI | CCWGG | 5 cut(s) | 635, 997, 2254, 2903, 3045 |
| BseDI | CCNNGG | 6 cut(s) | 27, 634, 931, 995, 1593, 2901 |
| BseJI | GATNNNNATC | 2 cut(s) | 882, 1285 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 1619, 1764, 2206, 2906, 2907, 3530 |
| BseMI | GCAATG | 1 cut(s) | 3447 |
| BseMII | CTCAG | 2 cut(s) | 1169, 1695 |
| BseNI | ACTGG | 4 cut(s) | 42, 1712, 2409, 2977 |
| BseRI | GAGGAG | 4 cut(s) | 68, 554, 2015, 2381 |
| BseYI | CCCAGC | 2 cut(s) | 156, 782 |
| BsgI | GTGCAG | 1 cut(s) | 1146 |
| Bsh1236I | CGCG | 1 cut(s) | 1674 |
| BshFI | GGCC | 6 cut(s) | 430, 633, 2184, 2850, 3238, 3495 |
| BshNI | GGYRCC | 1 cut(s) | 2688 |
| BsiHKAI | GWGCWC | 4 cut(s) | 309, 2352, 2407, 2763 |
| BsiHKCI | CYCGRG | 2 cut(s) | 674, 2363 |
| BsiSI | CCGG | 5 cut(s) | 495, 773, 2600, 3114, 3329 |
| BslFI | GGGAC | 6 cut(s) | 369, 2253, 2541, 2989, 3346, 3444 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 1619, 1764, 2206, 2906, 2907, 3530 |
| BsmAI | GTCTC | 5 cut(s) | 80, 2379, 2722, 2786, 3255 |
| BsmFI | GGGAC | 6 cut(s) | 369, 2253, 2541, 2989, 3346, 3444 |
| BsmI | GAATGC | 1 cut(s) | 2450 |
| BsnI | GGCC | 6 cut(s) | 430, 633, 2184, 2850, 3238, 3495 |
| Bso31I | GGTCTC | 2 cut(s) | 2786, 3255 |
| BsoBI | CYCGRG | 2 cut(s) | 674, 2363 |
| Bsp119I | TTCGAA | 1 cut(s) | 729 |
| Bsp1286I | GDGCHC | 4 cut(s) | 309, 2352, 2407, 2763 |
| Bsp13I | TCCGGA | 1 cut(s) | 3328 |
| BspACI | CCGC | 5 cut(s) | 750, 958, 2327, 2457, 3492 |
| BspANI | GGCC | 6 cut(s) | 430, 633, 2184, 2850, 3238, 3495 |
| BspCNI | CTCAG | 2 cut(s) | 1170, 1696 |
| BspEI | TCCGGA | 1 cut(s) | 3328 |
| BspFNI | CGCG | 1 cut(s) | 1674 |
| BspHI | TCATGA | 1 cut(s) | 463 |
| BspLI | GGNNCC | 2 cut(s) | 2690, 3344 |
| BspMAI | CTGCAG | 1 cut(s) | 3406 |
| BspMI | ACCTGC | 2 cut(s) | 1118, 3409 |
| BspPI | GGATC | 4 cut(s) | 210, 761, 1775, 3043 |
| BspQI | GCTCTTC | 2 cut(s) | 3330, 3360 |
| BspT104I | TTCGAA | 1 cut(s) | 729 |
| BspT107I | GGYRCC | 1 cut(s) | 2688 |
| BspTI | CTTAAG | 1 cut(s) | 2723 |
| BspTNI | GGTCTC | 2 cut(s) | 2786, 3255 |
| BsrBI | CCGCTC | 1 cut(s) | 3492 |
| BsrDI | GCAATG | 1 cut(s) | 3447 |
| BsrFI | RCCGGY | 1 cut(s) | 494 |
| BsrI | ACTGG | 4 cut(s) | 42, 1712, 2409, 2977 |
| BssAI | RCCGGY | 1 cut(s) | 494 |
| BssECI | CCNNGG | 6 cut(s) | 27, 634, 931, 995, 1593, 2901 |
| BssNI | GRCGYC | 2 cut(s) | 268, 2828 |
| BssSI | CACGAG | 1 cut(s) | 446 |
| BssT1I | CCWWGG | 1 cut(s) | 931 |
| Bst2BI | CACGAG | 1 cut(s) | 446 |
| Bst2UI | CCWGG | 5 cut(s) | 635, 997, 2254, 2903, 3045 |
| Bst4CI | ACNGT | 4 cut(s) | 690, 1489, 2780, 3553 |
| Bst6I | CTCTTC | 4 cut(s) | 2655, 2934, 3330, 3360 |
| BstACI | GRCGYC | 2 cut(s) | 268, 2828 |
| BstAFI | CTTAAG | 1 cut(s) | 2723 |
| BstBAI | YACGTR | 1 cut(s) | 2294 |
| BstBI | TTCGAA | 1 cut(s) | 729 |
| BstC8I | GCNNGC | 3 cut(s) | 1796, 2462, 2693 |
| BstDEI | CTNAG | 8 cut(s) | 757, 1178, 1704, 1871, 2307, 2684, 2792, 3240 |
| BstEII | GGTNACC | 1 cut(s) | 490 |
| BstFNI | CGCG | 1 cut(s) | 1674 |
| BstHHI | GCGC | 2 cut(s) | 1038, 1674 |
| BstMAI | GTCTC | 5 cut(s) | 80, 2379, 2722, 2786, 3255 |
| BstNI | CCWGG | 5 cut(s) | 635, 997, 2254, 2903, 3045 |
| BstNSI | RCATGY | 3 cut(s) | 2060, 2464, 2776 |
| BstPI | GGTNACC | 1 cut(s) | 490 |
| BstSCI | CCNGG | 6 cut(s) | 633, 995, 2252, 2901, 3043, 3112 |
| BstSFI | CTRYAG | 2 cut(s) | 1808, 3402 |
| BstSNI | TACGTA | 1 cut(s) | 2294 |
| BstUI | CGCG | 1 cut(s) | 1674 |
| BstV2I | GAAGAC | 2 cut(s) | 2108, 2145 |
| BstX2I | RGATCY | 3 cut(s) | 202, 753, 3035 |
| BstYI | RGATCY | 3 cut(s) | 202, 753, 3035 |
| BsuRI | GGCC | 6 cut(s) | 430, 633, 2184, 2850, 3238, 3495 |
| BtsI | GCAGTG | 2 cut(s) | 967, 1598 |
| BtsIMutI | CAGTG | 2 cut(s) | 967, 1598 |
| BveI | ACCTGC | 2 cut(s) | 1118, 3409 |
| Cac8I | GCNNGC | 3 cut(s) | 1796, 2462, 2693 |
| CciI | TCATGA | 1 cut(s) | 463 |
| CfoI | GCGC | 2 cut(s) | 1038, 1674 |
| Cfr10I | RCCGGY | 1 cut(s) | 494 |
| Cfr13I | GGNCC | 2 cut(s) | 2848, 3494 |
| CseI | GACGC | 3 cut(s) | 257, 366, 1663 |
| Csp6I | GTAC | 6 cut(s) | 479, 523, 1133, 1209, 2174, 2922 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 429, 464 |
| CviQI | GTAC | 6 cut(s) | 479, 523, 1133, 1209, 2174, 2922 |
| DdeI | CTNAG | 8 cut(s) | 757, 1178, 1704, 1871, 2307, 2684, 2792, 3240 |
| DraI | TTTAAA | 1 cut(s) | 1663 |
| Eam1104I | CTCTTC | 4 cut(s) | 2655, 2934, 3330, 3360 |
| EarI | CTCTTC | 4 cut(s) | 2655, 2934, 3330, 3360 |
| EciI | GGCGGA | 1 cut(s) | 2342 |
| Ecl136II | GAGCTC | 1 cut(s) | 2761 |
| Eco105I | TACGTA | 1 cut(s) | 2294 |
| Eco130I | CCWWGG | 1 cut(s) | 931 |
| Eco147I | AGGCCT | 2 cut(s) | 633, 2184 |
| Eco24I | GRGCYC | 1 cut(s) | 2763 |
| Eco31I | GGTCTC | 2 cut(s) | 2786, 3255 |
| Eco32I | GATATC | 1 cut(s) | 845 |
| Eco53kI | GAGCTC | 1 cut(s) | 2761 |
| Eco57I | CTGAAG | 6 cut(s) | 131, 2636, 2915, 3341, 3410, 3429 |
| Eco88I | CYCGRG | 2 cut(s) | 674, 2363 |
| Eco91I | GGTNACC | 1 cut(s) | 490 |
| EcoICRI | GAGCTC | 1 cut(s) | 2761 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2848 |
| EcoO65I | GGTNACC | 1 cut(s) | 490 |
| EcoRI | GAATTC | 1 cut(s) | 68 |
| EcoRII | CCWGG | 5 cut(s) | 633, 995, 2252, 2901, 3043 |
| EcoRV | GATATC | 1 cut(s) | 845 |
| EcoT14I | CCWWGG | 1 cut(s) | 931 |
| EcoT22I | ATGCAT | 2 cut(s) | 382, 2450 |
| EcoT38I | GRGCYC | 1 cut(s) | 2763 |
| ErhI | CCWWGG | 1 cut(s) | 931 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1250, 1282 |
| FaqI | GGGAC | 6 cut(s) | 369, 2253, 2541, 2989, 3346, 3444 |
| FauI | CCCGC | 2 cut(s) | 743, 965 |
| FbaI | TGATCA | 3 cut(s) | 883, 1863, 2151 |
| FriOI | GRGCYC | 1 cut(s) | 2763 |
| GlaI | GCGC | 2 cut(s) | 1037, 1673 |
| GsaI | CCCAGC | 2 cut(s) | 160, 786 |
| GsuI | CTGGAG | 1 cut(s) | 1370 |
| HaeIII | GGCC | 6 cut(s) | 430, 633, 2184, 2850, 3238, 3495 |
| HapII | CCGG | 5 cut(s) | 495, 773, 2600, 3114, 3329 |
| HgaI | GACGC | 3 cut(s) | 257, 366, 1663 |
| HhaI | GCGC | 2 cut(s) | 1038, 1674 |
| Hin1I | GRCGYC | 2 cut(s) | 268, 2828 |
| Hin6I | GCGC | 2 cut(s) | 1036, 1672 |
| HinP1I | GCGC | 2 cut(s) | 1036, 1672 |
| HincII | GTYRAC | 1 cut(s) | 2802 |
| HindII | GTYRAC | 1 cut(s) | 2802 |
| HindIII | AAGCTT | 3 cut(s) | 1796, 3223, 3242 |
| HpaI | GTTAAC | 1 cut(s) | 2802 |
| HpaII | CCGG | 5 cut(s) | 495, 773, 2600, 3114, 3329 |
| HphI | GGTGA | 7 cut(s) | 208, 1275, 1643, 2042, 2249, 3170, 3418 |
| Hpy166II | GTNNAC | 4 cut(s) | 1133, 1492, 2802, 3445 |
| Hpy8I | GTNNAC | 4 cut(s) | 1133, 1492, 2802, 3445 |
| Hpy99I | CGWCG | 1 cut(s) | 1995 |
| HpyCH4III | ACNGT | 4 cut(s) | 690, 1489, 2780, 3553 |
| HpyCH4IV | ACGT | 7 cut(s) | 458, 1534, 1814, 1960, 2293, 2828, 3286 |
| HpyF3I | CTNAG | 8 cut(s) | 757, 1178, 1704, 1871, 2307, 2684, 2792, 3240 |
| HpySE526I | ACGT | 7 cut(s) | 458, 1534, 1814, 1960, 2293, 2828, 3286 |
| Hsp92I | GRCGYC | 2 cut(s) | 268, 2828 |
| HspAI | GCGC | 2 cut(s) | 1036, 1672 |
| Kpn2I | TCCGGA | 1 cut(s) | 3328 |
| Ksp22I | TGATCA | 3 cut(s) | 883, 1863, 2151 |
| KspAI | GTTAAC | 1 cut(s) | 2802 |
| LguI | GCTCTTC | 2 cut(s) | 3330, 3360 |
| LmnI | GCTCC | 5 cut(s) | 1389, 1782, 2368, 2410, 2822 |
| MaeII | ACGT | 7 cut(s) | 458, 1534, 1814, 1960, 2293, 2828, 3286 |
| MaeIII | GTNAC | 6 cut(s) | 13, 344, 490, 949, 1078, 3199 |
| MbiI | CCGCTC | 1 cut(s) | 3492 |
| MfeI | CAATTG | 6 cut(s) | 978, 1495, 1719, 1923, 2021, 2393 |
| MflI | RGATCY | 3 cut(s) | 202, 753, 3035 |
| MhlI | GDGCHC | 4 cut(s) | 309, 2352, 2407, 2763 |
| MlyI | GAGTC | 5 cut(s) | 1553, 2275, 2600, 2971, 3037 |
| MmeI | TCCRAC | 3 cut(s) | 511, 531, 1384 |
| Mph1103I | ATGCAT | 2 cut(s) | 382, 2450 |
| MroI | TCCGGA | 1 cut(s) | 3328 |
| MroXI | GAANNNNTTC | 5 cut(s) | 261, 990, 1246, 2184, 3264 |
| MslI | CAYNNNNRTG | 1 cut(s) | 3069 |
| MspA1I | CMGCKG | 2 cut(s) | 410, 3407 |
| MspCI | CTTAAG | 1 cut(s) | 2723 |
| MspI | CCGG | 5 cut(s) | 495, 773, 2600, 3114, 3329 |
| MspR9I | CCNGG | 6 cut(s) | 635, 997, 2254, 2903, 3045, 3114 |
| MunI | CAATTG | 6 cut(s) | 978, 1495, 1719, 1923, 2021, 2393 |
| Mva1269I | GAATGC | 1 cut(s) | 2450 |
| MvaI | CCWGG | 5 cut(s) | 635, 997, 2254, 2903, 3045 |
| MvnI | CGCG | 1 cut(s) | 1674 |
| NciI | CCSGG | 1 cut(s) | 3114 |
| NlaIV | GGNNCC | 2 cut(s) | 2690, 3344 |
| NmeAIII | GCCGAG | 3 cut(s) | 52, 85, 1574 |
| NmuCI | GTSAC | 3 cut(s) | 344, 949, 1078 |
| NsiI | ATGCAT | 2 cut(s) | 382, 2450 |
| NspI | RCATGY | 3 cut(s) | 2060, 2464, 2776 |
| NspV | TTCGAA | 1 cut(s) | 729 |
| OliI | CACNNNNGTG | 1 cut(s) | 3069 |
| PaeI | GCATGC | 1 cut(s) | 2464 |
| PaeR7I | CTCGAG | 1 cut(s) | 2363 |
| PagI | TCATGA | 1 cut(s) | 463 |
| PaqCI | CACCTGC | 1 cut(s) | 1118 |
| PceI | AGGCCT | 2 cut(s) | 633, 2184 |
| PciSI | GCTCTTC | 2 cut(s) | 3330, 3360 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 611 |
| PctI | GAATGC | 1 cut(s) | 2450 |
| PdmI | GAANNNNTTC | 5 cut(s) | 261, 990, 1246, 2184, 3264 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3530 |
| PfoI | TCCNGGA | 1 cut(s) | 2252 |
| PleI | GAGTC | 5 cut(s) | 1553, 2274, 2599, 2971, 3036 |
| PpsI | GAGTC | 5 cut(s) | 1553, 2274, 2599, 2971, 3036 |
| Ppu21I | YACGTR | 1 cut(s) | 2294 |
| PshBI | ATTAAT | 1 cut(s) | 2160 |
| PsiI | TTATAA | 2 cut(s) | 1344, 1803 |
| Psp124BI | GAGCTC | 1 cut(s) | 2763 |
| Psp6I | CCWGG | 5 cut(s) | 633, 995, 2252, 2901, 3043 |
| PspEI | GGTNACC | 1 cut(s) | 490 |
| PspFI | CCCAGC | 2 cut(s) | 156, 782 |
| PspGI | CCWGG | 5 cut(s) | 633, 995, 2252, 2901, 3043 |
| PspN4I | GGNNCC | 2 cut(s) | 2690, 3344 |
| PspPI | GGNCC | 2 cut(s) | 2848, 3494 |
| PspXI | VCTCGAGB | 1 cut(s) | 2363 |
| PstI | CTGCAG | 1 cut(s) | 3406 |
| PsuI | RGATCY | 3 cut(s) | 202, 753, 3035 |
| PvuII | CAGCTG | 2 cut(s) | 410, 3407 |
| RsaI | GTAC | 6 cut(s) | 480, 524, 1134, 1210, 2175, 2923 |
| RsaNI | GTAC | 6 cut(s) | 479, 523, 1133, 1209, 2174, 2922 |
| RseI | CAYNNNNRTG | 1 cut(s) | 3069 |
| SacI | GAGCTC | 1 cut(s) | 2763 |
| SapI | GCTCTTC | 2 cut(s) | 3330, 3360 |
| Sau96I | GGNCC | 2 cut(s) | 2848, 3494 |
| ScaI | AGTACT | 1 cut(s) | 480 |
| SchI | GAGTC | 5 cut(s) | 1553, 2275, 2600, 2971, 3037 |
| ScrFI | CCNGG | 6 cut(s) | 635, 997, 2254, 2903, 3045, 3114 |
| SduI | GDGCHC | 4 cut(s) | 309, 2352, 2407, 2763 |
| SfcI | CTRYAG | 2 cut(s) | 1808, 3402 |
| Sfr274I | CTCGAG | 1 cut(s) | 2363 |
| SfuI | TTCGAA | 1 cut(s) | 729 |
| SlaI | CTCGAG | 1 cut(s) | 2363 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 3069 |
| SmlI | CTYRAG | 7 cut(s) | 219, 1374, 1654, 1738, 1911, 2363, 2723 |
| SmoI | CTYRAG | 7 cut(s) | 219, 1374, 1654, 1738, 1911, 2363, 2723 |
| SnaBI | TACGTA | 1 cut(s) | 2294 |
| SpeI | ACTAGT | 1 cut(s) | 2750 |
| SphI | GCATGC | 1 cut(s) | 2464 |
| SseBI | AGGCCT | 2 cut(s) | 633, 2184 |
| SsiI | CCGC | 5 cut(s) | 750, 958, 2327, 2457, 3492 |
| SspI | AATATT | 6 cut(s) | 1438, 1955, 2813, 2918, 2946, 3529 |
| SstI | GAGCTC | 1 cut(s) | 2763 |
| StuI | AGGCCT | 2 cut(s) | 633, 2184 |
| StyD4I | CCNGG | 6 cut(s) | 633, 995, 2252, 2901, 3043, 3112 |
| StyI | CCWWGG | 1 cut(s) | 931 |
| TaaI | ACNGT | 4 cut(s) | 690, 1489, 2780, 3553 |
| TaiI | ACGT | 7 cut(s) | 461, 1537, 1817, 1963, 2296, 2831, 3289 |
| TaqI | TCGA | 6 cut(s) | 693, 729, 858, 1749, 1993, 2364 |
| TaqII | GACCGA | 1 cut(s) | 3237 |
| TatI | WGTACW | 4 cut(s) | 478, 522, 1208, 2173 |
| TauI | GCSGC | 2 cut(s) | 2460, 3495 |
| TscAI | CASTG | 2 cut(s) | 967, 1605 |
| TseFI | GTSAC | 3 cut(s) | 344, 949, 1078 |
| Tsp45I | GTSAC | 3 cut(s) | 344, 949, 1078 |
| TspGWI | ACGGA | 6 cut(s) | 1066, 1632, 2636, 2647, 2852, 3059 |
| TspRI | CASTG | 2 cut(s) | 967, 1605 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3530 |
| Vha464I | CTTAAG | 1 cut(s) | 2723 |
| VspI | ATTAAT | 1 cut(s) | 2160 |
| XapI | RAATTY | 8 cut(s) | 68, 574, 1219, 1429, 1858, 1895, 2210, 2243 |
| XbaI | TCTAGA | 2 cut(s) | 2050, 2755 |
| XceI | RCATGY | 3 cut(s) | 2060, 2464, 2776 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1003 |
| XhoI | CTCGAG | 1 cut(s) | 2363 |
| XmnI | GAANNNNTTC | 5 cut(s) | 261, 990, 1246, 2184, 3264 |
| ZraI | GACGTC | 1 cut(s) | 2829 |
| ZrmI | AGTACT | 1 cut(s) | 480 |
| Zsp2I | ATGCAT | 2 cut(s) | 382, 2450 |