disease resistance
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Rx_N | PF18052 | 13 - 100 | 3.6e-20 | Rx N-terminal domain |
| NB-ARC | PF00931 | 177 - 349 | 7e-37 | NB-ARC domain |
| WHD_DRP | PF23559 | 439 - 508 | 4.9e-22 | Disease resistance protein Winged helix domain |
| LRR_14 | PF23598 | 535 - 798 | 3.3e-29 | Leucine-rich repeat region |
| LRR_R13L1-DRL21 | PF25019 | 656 - 792 | 6.3e-35 | R13L1/DRL21 LRRs |
| LRR_5 | PF13306 | 986 - 1103 | 5e-07 | BspA type Leucine rich repeat region (6 copies) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2415 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 52 |
| AatII | GACGTC | 1 cut(s) | 1728 |
| Acc16I | TGCGCA | 1 cut(s) | 1593 |
| Acc36I | ACCTGC | 2 cut(s) | 667, 1789 |
| AccB1I | GGYRCC | 1 cut(s) | 2545 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 2998, 4275 |
| AccBSI | CCGCTC | 1 cut(s) | 3453 |
| AccI | GTMKAC | 3 cut(s) | 1733, 3606, 3694 |
| AccII | CGCG | 5 cut(s) | 1279, 3012, 3288, 3531, 4038 |
| AclI | AACGTT | 1 cut(s) | 2154 |
| AclWI | GGATC | 8 cut(s) | 171, 474, 483, 591, 778, 1342, 2284, 2800 |
| AcsI | RAATTY | 9 cut(s) | 11, 39, 907, 1045, 1687, 1883, 2237, 2402, 4233 |
| AcuI | CTGAAG | 6 cut(s) | 54, 128, 1491, 3341, 3461, 3575 |
| AcyI | GRCGYC | 1 cut(s) | 1725 |
| AflII | CTTAAG | 3 cut(s) | 2209, 2867, 3662 |
| AflIII | ACRYGT | 3 cut(s) | 1571, 2356, 3529 |
| AhlI | ACTAGT | 1 cut(s) | 1166 |
| AjnI | CCWGG | 6 cut(s) | 457, 613, 1216, 2580, 2598, 4170 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 504, 536, 3353, 3385 |
| Alw21I | GWGCWC | 3 cut(s) | 405, 2714, 3981 |
| Alw26I | GTCTC | 7 cut(s) | 359, 1658, 1732, 2450, 3506, 3804, 4062 |
| AlwI | GGATC | 8 cut(s) | 171, 474, 483, 591, 778, 1342, 2284, 2800 |
| Ama87I | CYCGRG | 2 cut(s) | 116, 2939 |
| ApoI | RAATTY | 9 cut(s) | 11, 39, 907, 1045, 1687, 1883, 2237, 2402, 4233 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 482, 514, 2855, 2887 |
| AseI | ATTAAT | 1 cut(s) | 2006 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 39, 448, 975, 4071 |
| AspLEI | GCGC | 7 cut(s) | 158, 279, 367, 1158, 1594, 3930, 4038 |
| AspS9I | GGNCC | 6 cut(s) | 1020, 2736, 3133, 3423, 3962, 4278 |
| AsuC2I | CCSGG | 3 cut(s) | 918, 2346, 3794 |
| AsuHPI | GGTGA | 9 cut(s) | 70, 928, 1066, 1266, 2012, 2243, 2519, 2831, 3499 |
| AvaI | CYCGRG | 2 cut(s) | 116, 2939 |
| AvaII | GGWCC | 2 cut(s) | 1020, 3962 |
| AxyI | CCTNAGG | 1 cut(s) | 2764 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3309, 3342 |
| BanI | GGYRCC | 1 cut(s) | 2545 |
| BanII | GRGCYC | 2 cut(s) | 405, 3981 |
| BauI | CACGAG | 2 cut(s) | 230, 1554 |
| BbsI | GAAGAC | 3 cut(s) | 48, 2927, 3526 |
| Bbv12I | GWGCWC | 3 cut(s) | 405, 2714, 3981 |
| BceAI | ACGGC | 2 cut(s) | 290, 2336 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 913, 947 |
| BciT130I | CCWGG | 6 cut(s) | 459, 615, 1218, 2582, 2600, 4172 |
| BciVI | GTATCC | 2 cut(s) | 1405, 1543 |
| BclI | TGATCA | 1 cut(s) | 1845 |
| BcnI | CCSGG | 3 cut(s) | 918, 2346, 3794 |
| BcoDI | GTCTC | 7 cut(s) | 359, 1658, 1732, 2450, 3506, 3804, 4062 |
| BcuI | ACTAGT | 1 cut(s) | 1166 |
| BfmI | CTRYAG | 4 cut(s) | 663, 3077, 3215, 3502 |
| BfoI | RGCGCY | 1 cut(s) | 159 |
| BfrI | CTTAAG | 3 cut(s) | 2209, 2867, 3662 |
| BfuAI | ACCTGC | 2 cut(s) | 667, 1789 |
| BfuI | GTATCC | 2 cut(s) | 1405, 1543 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 956 |
| Bme1390I | CCNGG | 9 cut(s) | 459, 615, 918, 1218, 2346, 2582, 2600, 3794, 4172 |
| Bme18I | GGWCC | 2 cut(s) | 1020, 3962 |
| BmeT110I | CYCGRG | 2 cut(s) | 116, 2939 |
| BmgT120I | GGNCC | 6 cut(s) | 1020, 2736, 3133, 3423, 3962, 4278 |
| BmiI | GGNNCC | 3 cut(s) | 2324, 2547, 2737 |
| BmrFI | CCNGG | 9 cut(s) | 459, 615, 918, 1218, 2346, 2582, 2600, 3794, 4172 |
| BmrI | ACTGGG | 1 cut(s) | 629 |
| BmuI | ACTGGG | 1 cut(s) | 629 |
| BoxI | GACNNNNGTC | 2 cut(s) | 1061, 2462 |
| BpiI | GAAGAC | 3 cut(s) | 48, 2927, 3526 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 2608, 2640, 3968, 4000 |
| BpmI | CTGGAG | 7 cut(s) | 480, 1239, 2105, 2603, 2921, 3824, 3965 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1365 |
| BpuEI | CTTGAG | 7 cut(s) | 54, 389, 1732, 1873, 2630, 4037, 4148 |
| BpuMI | CCSGG | 3 cut(s) | 918, 2346, 3794 |
| BsaBI | GATNNNNATC | 3 cut(s) | 480, 1074, 3651 |
| BsaHI | GRCGYC | 1 cut(s) | 1725 |
| BsaI | GGTCTC | 1 cut(s) | 3506 |
| BsaJI | CCNNGG | 6 cut(s) | 48, 457, 1826, 2246, 2913, 4171 |
| Bse118I | RCCGGY | 1 cut(s) | 2548 |
| Bse1I | ACTGG | 4 cut(s) | 624, 2088, 2178, 2904 |
| Bse21I | CCTNAGG | 1 cut(s) | 2764 |
| Bse3DI | GCAATG | 4 cut(s) | 788, 1426, 1640, 3694 |
| Bse8I | GATNNNNATC | 3 cut(s) | 480, 1074, 3651 |
| BseBI | CCWGG | 6 cut(s) | 459, 615, 1218, 2582, 2600, 4172 |
| BseDI | CCNNGG | 6 cut(s) | 48, 457, 1826, 2246, 2913, 4171 |
| BseJI | GATNNNNATC | 3 cut(s) | 480, 1074, 3651 |
| BseMI | GCAATG | 4 cut(s) | 788, 1426, 1640, 3694 |
| BseMII | CTCAG | 5 cut(s) | 983, 1379, 2606, 2778, 3179 |
| BseNI | ACTGG | 4 cut(s) | 624, 2088, 2178, 2904 |
| BseRI | GAGGAG | 3 cut(s) | 2177, 3821, 3989 |
| BsgI | GTGCAG | 4 cut(s) | 3052, 3190, 3451, 4145 |
| Bsh1236I | CGCG | 5 cut(s) | 1279, 3012, 3288, 3531, 4038 |
| BshNI | GGYRCC | 1 cut(s) | 2545 |
| BsiHKAI | GWGCWC | 3 cut(s) | 405, 2714, 3981 |
| BsiHKCI | CYCGRG | 2 cut(s) | 116, 2939 |
| BsiSI | CCGG | 6 cut(s) | 917, 1893, 2345, 2549, 2809, 3794 |
| BslFI | GGGAC | 1 cut(s) | 3567 |
| BsmAI | GTCTC | 7 cut(s) | 359, 1658, 1732, 2450, 3506, 3804, 4062 |
| BsmBI | CGTCTC | 2 cut(s) | 359, 1732 |
| BsmFI | GGGAC | 1 cut(s) | 3567 |
| BsmI | GAATGC | 4 cut(s) | 615, 1800, 3192, 3866 |
| Bso31I | GGTCTC | 1 cut(s) | 3506 |
| BsoBI | CYCGRG | 2 cut(s) | 116, 2939 |
| Bsp1286I | GDGCHC | 3 cut(s) | 405, 2714, 3981 |
| Bsp1407I | TGTACA | 2 cut(s) | 648, 2877 |
| Bsp19I | CCATGG | 1 cut(s) | 2246 |
| BspCNI | CTCAG | 5 cut(s) | 984, 1378, 2607, 2777, 3178 |
| BspFNI | CGCG | 5 cut(s) | 1279, 3012, 3288, 3531, 4038 |
| BspHI | TCATGA | 1 cut(s) | 2158 |
| BspLI | GGNNCC | 3 cut(s) | 2324, 2547, 2737 |
| BspMI | ACCTGC | 2 cut(s) | 667, 1789 |
| BspPI | GGATC | 8 cut(s) | 171, 474, 483, 591, 778, 1342, 2284, 2800 |
| BspT107I | GGYRCC | 1 cut(s) | 2545 |
| BspTI | CTTAAG | 3 cut(s) | 2209, 2867, 3662 |
| BspTNI | GGTCTC | 1 cut(s) | 3506 |
| BsrBI | CCGCTC | 1 cut(s) | 3453 |
| BsrDI | GCAATG | 4 cut(s) | 788, 1426, 1640, 3694 |
| BsrFI | RCCGGY | 1 cut(s) | 2548 |
| BsrGI | TGTACA | 2 cut(s) | 648, 2877 |
| BsrI | ACTGG | 4 cut(s) | 624, 2088, 2178, 2904 |
| BssAI | RCCGGY | 1 cut(s) | 2548 |
| BssECI | CCNNGG | 6 cut(s) | 48, 457, 1826, 2246, 2913, 4171 |
| BssNAI | GTATAC | 2 cut(s) | 1734, 3607 |
| BssNI | GRCGYC | 1 cut(s) | 1725 |
| BssSI | CACGAG | 2 cut(s) | 230, 1554 |
| BssT1I | CCWWGG | 3 cut(s) | 48, 1826, 2246 |
| Bst1107I | GTATAC | 2 cut(s) | 1734, 3607 |
| Bst2BI | CACGAG | 2 cut(s) | 230, 1554 |
| Bst2UI | CCWGG | 6 cut(s) | 459, 615, 1218, 2582, 2600, 4172 |
| Bst4CI | ACNGT | 5 cut(s) | 2502, 3308, 3330, 3347, 3581 |
| Bst6I | CTCTTC | 7 cut(s) | 299, 439, 807, 1218, 1401, 3480, 4065 |
| BstACI | GRCGYC | 1 cut(s) | 1725 |
| BstAFI | CTTAAG | 3 cut(s) | 2209, 2867, 3662 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 965 |
| BstAUI | TGTACA | 2 cut(s) | 648, 2877 |
| BstC8I | GCNNGC | 3 cut(s) | 1769, 2692, 4128 |
| BstDEI | CTNAG | 8 cut(s) | 992, 1126, 1365, 2090, 2297, 2615, 2764, 3165 |
| BstDSI | CCRYGG | 1 cut(s) | 2246 |
| BstFNI | CGCG | 5 cut(s) | 1279, 3012, 3288, 3531, 4038 |
| BstH2I | RGCGCY | 1 cut(s) | 159 |
| BstHHI | GCGC | 7 cut(s) | 158, 279, 367, 1158, 1594, 3930, 4038 |
| BstMAI | GTCTC | 7 cut(s) | 359, 1658, 1732, 2450, 3506, 3804, 4062 |
| BstNI | CCWGG | 6 cut(s) | 459, 615, 1218, 2582, 2600, 4172 |
| BstNSI | RCATGY | 3 cut(s) | 1575, 1624, 2360 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 1061, 2462 |
| BstSCI | CCNGG | 9 cut(s) | 457, 613, 916, 1216, 2344, 2580, 2598, 3792, 4170 |
| BstSFI | CTRYAG | 4 cut(s) | 663, 3077, 3215, 3502 |
| BstUI | CGCG | 5 cut(s) | 1279, 3012, 3288, 3531, 4038 |
| BstV2I | GAAGAC | 3 cut(s) | 48, 2927, 3526 |
| BstX2I | RGATCY | 3 cut(s) | 583, 2289, 2805 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2542 |
| BstYI | RGATCY | 3 cut(s) | 583, 2289, 2805 |
| BstZ17I | GTATAC | 2 cut(s) | 1734, 3607 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2764 |
| BsuI | GTATCC | 2 cut(s) | 1405, 1543 |
| BtgI | CCRYGG | 1 cut(s) | 2246 |
| BtgZI | GCGATG | 1 cut(s) | 3585 |
| BtsI | GCAGTG | 4 cut(s) | 952, 1295, 3064, 3202 |
| BtsIMutI | CAGTG | 7 cut(s) | 651, 952, 1295, 2477, 3064, 3173, 3202 |
| BveI | ACCTGC | 2 cut(s) | 667, 1789 |
| Cac8I | GCNNGC | 3 cut(s) | 1769, 2692, 4128 |
| CciI | TCATGA | 1 cut(s) | 2158 |
| CfoI | GCGC | 7 cut(s) | 158, 279, 367, 1158, 1594, 3930, 4038 |
| Cfr10I | RCCGGY | 1 cut(s) | 2548 |
| Cfr13I | GGNCC | 6 cut(s) | 1020, 2736, 3133, 3423, 3962, 4278 |
| CseI | GACGC | 1 cut(s) | 3520 |
| DdeI | CTNAG | 8 cut(s) | 992, 1126, 1365, 2090, 2297, 2615, 2764, 3165 |
| DraI | TTTAAA | 2 cut(s) | 1327, 2802 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 52 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 52 |
| Eam1104I | CTCTTC | 7 cut(s) | 299, 439, 807, 1218, 1401, 3480, 4065 |
| EarI | CTCTTC | 7 cut(s) | 299, 439, 807, 1218, 1401, 3480, 4065 |
| Ecl136II | GAGCTC | 2 cut(s) | 403, 3979 |
| Eco130I | CCWWGG | 3 cut(s) | 48, 1826, 2246 |
| Eco147I | AGGCCT | 1 cut(s) | 3273 |
| Eco24I | GRGCYC | 2 cut(s) | 405, 3981 |
| Eco31I | GGTCTC | 1 cut(s) | 3506 |
| Eco32I | GATATC | 2 cut(s) | 1718, 3492 |
| Eco47I | GGWCC | 2 cut(s) | 1020, 3962 |
| Eco53kI | GAGCTC | 2 cut(s) | 403, 3979 |
| Eco57I | CTGAAG | 6 cut(s) | 54, 128, 1491, 3341, 3461, 3575 |
| Eco81I | CCTNAGG | 1 cut(s) | 2764 |
| Eco88I | CYCGRG | 2 cut(s) | 116, 2939 |
| EcoICRI | GAGCTC | 2 cut(s) | 403, 3979 |
| EcoO109I | RGGNCCY | 2 cut(s) | 3133, 3962 |
| EcoRI | GAATTC | 1 cut(s) | 907 |
| EcoRII | CCWGG | 6 cut(s) | 457, 613, 1216, 2580, 2598, 4170 |
| EcoRV | GATATC | 2 cut(s) | 1718, 3492 |
| EcoT14I | CCWWGG | 3 cut(s) | 48, 1826, 2246 |
| EcoT22I | ATGCAT | 1 cut(s) | 790 |
| EcoT38I | GRGCYC | 2 cut(s) | 405, 3981 |
| ErhI | CCWWGG | 3 cut(s) | 48, 1826, 2246 |
| Esp3I | CGTCTC | 2 cut(s) | 359, 1732 |
| FaqI | GGGAC | 1 cut(s) | 3567 |
| FauI | CCCGC | 8 cut(s) | 950, 1638, 1896, 2669, 3326, 3446, 3751, 4031 |
| FauNDI | CATATG | 1 cut(s) | 2696 |
| FbaI | TGATCA | 1 cut(s) | 1845 |
| FblI | GTMKAC | 3 cut(s) | 1733, 3606, 3694 |
| FriOI | GRGCYC | 2 cut(s) | 405, 3981 |
| FspI | TGCGCA | 1 cut(s) | 1593 |
| GlaI | GCGC | 7 cut(s) | 157, 278, 366, 1157, 1593, 3929, 4037 |
| GsuI | CTGGAG | 7 cut(s) | 480, 1239, 2105, 2603, 2921, 3824, 3965 |
| HaeII | RGCGCY | 1 cut(s) | 159 |
| HapII | CCGG | 6 cut(s) | 917, 1893, 2345, 2549, 2809, 3794 |
| HgaI | GACGC | 1 cut(s) | 3520 |
| HhaI | GCGC | 7 cut(s) | 158, 279, 367, 1158, 1594, 3930, 4038 |
| Hin1I | GRCGYC | 1 cut(s) | 1725 |
| Hin6I | GCGC | 7 cut(s) | 156, 277, 365, 1156, 1592, 3928, 4036 |
| HinP1I | GCGC | 7 cut(s) | 156, 277, 365, 1156, 1592, 3928, 4036 |
| HincII | GTYRAC | 4 cut(s) | 2592, 3318, 3438, 3918 |
| HindII | GTYRAC | 4 cut(s) | 2592, 3318, 3438, 3918 |
| HindIII | AAGCTT | 1 cut(s) | 1820 |
| HpaI | GTTAAC | 2 cut(s) | 3318, 3438 |
| HpaII | CCGG | 6 cut(s) | 917, 1893, 2345, 2549, 2809, 3794 |
| HphI | GGTGA | 9 cut(s) | 70, 928, 1066, 1266, 2012, 2243, 2519, 2831, 3499 |
| HpyCH4III | ACNGT | 5 cut(s) | 2502, 3308, 3330, 3347, 3581 |
| HpyCH4IV | ACGT | 2 cut(s) | 1725, 2154 |
| HpyF3I | CTNAG | 8 cut(s) | 992, 1126, 1365, 2090, 2297, 2615, 2764, 3165 |
| HpySE526I | ACGT | 2 cut(s) | 1725, 2154 |
| Hsp92I | GRCGYC | 1 cut(s) | 1725 |
| HspAI | GCGC | 7 cut(s) | 156, 277, 365, 1156, 1592, 3928, 4036 |
| Ksp22I | TGATCA | 1 cut(s) | 1845 |
| KspAI | GTTAAC | 2 cut(s) | 3318, 3438 |
| MaeII | ACGT | 2 cut(s) | 1725, 2154 |
| MaeIII | GTNAC | 6 cut(s) | 934, 1054, 1465, 1801, 2610, 3374 |
| MbiI | CCGCTC | 1 cut(s) | 3453 |
| MfeI | CAATTG | 5 cut(s) | 1761, 1991, 2460, 2685, 3235 |
| MflI | RGATCY | 3 cut(s) | 583, 2289, 2805 |
| MhlI | GDGCHC | 3 cut(s) | 405, 2714, 3981 |
| MluI | ACGCGT | 1 cut(s) | 3529 |
| MlyI | GAGTC | 5 cut(s) | 485, 740, 2175, 2587, 3977 |
| MmeI | TCCRAC | 8 cut(s) | 453, 502, 586, 594, 1375, 1402, 2181, 2209 |
| Mph1103I | ATGCAT | 1 cut(s) | 790 |
| MroXI | GAANNNNTTC | 4 cut(s) | 39, 448, 975, 4071 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2540 |
| MspA1I | CMGCKG | 2 cut(s) | 8, 2676 |
| MspCI | CTTAAG | 3 cut(s) | 2209, 2867, 3662 |
| MspI | CCGG | 6 cut(s) | 917, 1893, 2345, 2549, 2809, 3794 |
| MspR9I | CCNGG | 9 cut(s) | 459, 615, 918, 1218, 2346, 2582, 2600, 3794, 4172 |
| MunI | CAATTG | 5 cut(s) | 1761, 1991, 2460, 2685, 3235 |
| Mva1269I | GAATGC | 4 cut(s) | 615, 1800, 3192, 3866 |
| MvaI | CCWGG | 6 cut(s) | 459, 615, 1218, 2582, 2600, 4172 |
| MvnI | CGCG | 5 cut(s) | 1279, 3012, 3288, 3531, 4038 |
| NciI | CCSGG | 3 cut(s) | 918, 2346, 3794 |
| NcoI | CCATGG | 1 cut(s) | 2246 |
| NdeI | CATATG | 1 cut(s) | 2696 |
| NlaIV | GGNNCC | 3 cut(s) | 2324, 2547, 2737 |
| NmeAIII | GCCGAG | 1 cut(s) | 2938 |
| NmuCI | GTSAC | 2 cut(s) | 934, 1054 |
| NsbI | TGCGCA | 1 cut(s) | 1593 |
| NsiI | ATGCAT | 1 cut(s) | 790 |
| NspI | RCATGY | 3 cut(s) | 1575, 1624, 2360 |
| PaeR7I | CTCGAG | 1 cut(s) | 2939 |
| PagI | TCATGA | 1 cut(s) | 2158 |
| PceI | AGGCCT | 1 cut(s) | 3273 |
| PciI | ACATGT | 2 cut(s) | 1571, 2356 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 3326, 3446 |
| PctI | GAATGC | 4 cut(s) | 615, 1800, 3192, 3866 |
| PdmI | GAANNNNTTC | 4 cut(s) | 39, 448, 975, 4071 |
| PfeI | GAWTC | 8 cut(s) | 449, 1233, 1559, 1740, 2788, 3391, 3652, 4192 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 2998, 4275 |
| PfoI | TCCNGGA | 2 cut(s) | 916, 2598 |
| PleI | GAGTC | 5 cut(s) | 485, 740, 2175, 2587, 3977 |
| PpsI | GAGTC | 5 cut(s) | 485, 740, 2175, 2587, 3977 |
| PpuMI | RGGWCCY | 1 cut(s) | 3962 |
| PscI | ACATGT | 2 cut(s) | 1571, 2356 |
| PshAI | GACNNNNGTC | 2 cut(s) | 1061, 2462 |
| PshBI | ATTAAT | 1 cut(s) | 2006 |
| PsiI | TTATAA | 1 cut(s) | 2415 |
| Psp124BI | GAGCTC | 2 cut(s) | 405, 3981 |
| Psp1406I | AACGTT | 1 cut(s) | 2154 |
| Psp5II | RGGWCCY | 1 cut(s) | 3962 |
| Psp6I | CCWGG | 6 cut(s) | 457, 613, 1216, 2580, 2598, 4170 |
| PspGI | CCWGG | 6 cut(s) | 457, 613, 1216, 2580, 2598, 4170 |
| PspN4I | GGNNCC | 3 cut(s) | 2324, 2547, 2737 |
| PspPI | GGNCC | 6 cut(s) | 1020, 2736, 3133, 3423, 3962, 4278 |
| PspPPI | RGGWCCY | 1 cut(s) | 3962 |
| PsuI | RGATCY | 3 cut(s) | 583, 2289, 2805 |
| PvuII | CAGCTG | 1 cut(s) | 8 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2540 |
| SacI | GAGCTC | 2 cut(s) | 405, 3981 |
| Sau96I | GGNCC | 6 cut(s) | 1020, 2736, 3133, 3423, 3962, 4278 |
| SchI | GAGTC | 5 cut(s) | 485, 740, 2175, 2587, 3977 |
| ScrFI | CCNGG | 9 cut(s) | 459, 615, 918, 1218, 2346, 2582, 2600, 3794, 4172 |
| SduI | GDGCHC | 3 cut(s) | 405, 2714, 3981 |
| SfcI | CTRYAG | 4 cut(s) | 663, 3077, 3215, 3502 |
| Sfr274I | CTCGAG | 1 cut(s) | 2939 |
| SinI | GGWCC | 2 cut(s) | 1020, 3962 |
| SlaI | CTCGAG | 1 cut(s) | 2939 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2540 |
| SpeI | ACTAGT | 1 cut(s) | 1166 |
| SseBI | AGGCCT | 1 cut(s) | 3273 |
| SspI | AATATT | 2 cut(s) | 1435, 1899 |
| SstI | GAGCTC | 2 cut(s) | 405, 3981 |
| StuI | AGGCCT | 1 cut(s) | 3273 |
| StyD4I | CCNGG | 9 cut(s) | 457, 613, 916, 1216, 2344, 2580, 2598, 3792, 4170 |
| StyI | CCWWGG | 3 cut(s) | 48, 1826, 2246 |
| TaaI | ACNGT | 5 cut(s) | 2502, 3308, 3330, 3347, 3581 |
| TaiI | ACGT | 2 cut(s) | 1728, 2157 |
| TatI | WGTACW | 6 cut(s) | 648, 838, 1491, 2080, 2170, 2877 |
| TauI | GCSGC | 1 cut(s) | 156 |
| TfiI | GAWTC | 8 cut(s) | 449, 1233, 1559, 1740, 2788, 3391, 3652, 4192 |
| TscAI | CASTG | 7 cut(s) | 651, 952, 1295, 2484, 3071, 3173, 3209 |
| TseFI | GTSAC | 2 cut(s) | 934, 1054 |
| Tsp45I | GTSAC | 2 cut(s) | 934, 1054 |
| TspGWI | ACGGA | 5 cut(s) | 503, 2598, 2921, 3863, 3903 |
| TspRI | CASTG | 7 cut(s) | 651, 952, 1295, 2484, 3071, 3173, 3209 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 2998, 4275 |
| Vha464I | CTTAAG | 3 cut(s) | 2209, 2867, 3662 |
| VpaK11BI | GGWCC | 2 cut(s) | 1020, 3962 |
| VspI | ATTAAT | 1 cut(s) | 2006 |
| XapI | RAATTY | 9 cut(s) | 11, 39, 907, 1045, 1687, 1883, 2237, 2402, 4233 |
| XbaI | TCTAGA | 4 cut(s) | 1720, 2920, 2971, 3508 |
| XceI | RCATGY | 3 cut(s) | 1575, 1624, 2360 |
| XhoI | CTCGAG | 1 cut(s) | 2939 |
| XmiI | GTMKAC | 3 cut(s) | 1733, 3606, 3694 |
| XmnI | GAANNNNTTC | 4 cut(s) | 39, 448, 975, 4071 |
| ZraI | GACGTC | 1 cut(s) | 1726 |
| Zsp2I | ATGCAT | 1 cut(s) | 790 |