Rw3G013050

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Reverse (-)
12844584 .. 12849468
4885 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G013050.1

Sequence Viewer

Length: 3921 bp
ATGGCTGAATTTCTTACATTTCCTGCCCAGGAAATGGTGACCAGAGTGACTTCACTTGCCGCTCAAGAGTTCAATCTTGTGAGGGGATTCAAAGGAGAAGTAACAAAGCTGCGTGAGTCACTGCTGGTGCTTGAATCTATGCTACGAGATGCTGAACATCCGCGACAAGATAAGGGAGAGGCTGTGAAGCTGTGGGTGAAGAAGCTTGAAGTCATAGTTCATCGTGCTGATGATCTGTTAGATGACTATGGATATGAGCTTCTCCGGCGTAAGGTGGAACTGCGAAACCCGATGAAGAAAAAGGTTCAAGATTTCTTTTCCCTCTCCAATCCCATTGTATTTCGTGTTAAAATGGCACATAAAATTAAGAAGATCAACGCATCTTTAGATGATTTGTATAAAATGGCAAGTGCTATTGGGATTGCTAGGCTAACCGCAGATGCAGCAACATCCCATGATATAAGAATTAGCAGGGAAACCTACCCGAGCTTTAAAATAGATGAAAATAAAATCATTGGAAGGGAGGAGGTTGTGTCTGATATAGTGGAAGCCTTGACCACCTCAAGCAAAAAACAGGAAAATGATTTATCTGTTATGGCCATTGTGGGAATGGCAGGACTAGGGAAGACAACTTTGGCTAAATCTGTGTACCATGATGATAAGATAGACAAACACTTTGATGAAAGAATATGGGTTTGTGTATCTACCCCTTTCGAGGTCAATTCGATTCTAAGGGGAATCTTGGAGTTTCTTAGACCAGAACATGCTGCAGTACAATCTATAGGTGCAATGTGTAGAGTCCTCAAAGAAAACTTAAAAGAGAAAAGGTATCTTCTTGTGCTTGATGATGTCTGGAATGAAGAGTCCCAAAAATGGCATGATTTGATCAGTTGTTTGCTAAGAGTCACTGATAATCAAGGAAGCAGTATCATTGTCACTACCCGCAGTGATAAAGTTGCAAAAACAGTAGAGACTCTTCCGAGGTGTGATTTGAGAAAACTATCAAATGATGAATGTTGGCTTATACTGAAGGATAGAGCAGTTCCAGATGAAAGTGATCCAATGCCTCAAGATCAAGAGAGAATTGGAAAGGAAATTGCCAAAAAGTGTGGTGGTGTACCATTAGTGGCAAAGGTCGTGGGAAACATCATGCGCTCTAAAACGATTGTTGGATGGAAATCACTTTTGGAAAGTGAAATATGGGATTTACCAGAAGAAAAAGATAGAATCTTGTTAATTTTGAAGTTGAGTTTTGATGAATTGGAATCTCCACAGTTGAAACAATGTTTTGCATATTGCTCAATGTTCATCAAAGATTTTGAAATGGAAAAGGATGACTTGGTCCAACTTTGGATGGCTCAAGGATGGCTTCACTGTTCTCCCACCAAAAGTAACCTAGAGATGGAGGACAGAGGTAACGAATATTTTGATATCTTATTAGAAAAGTCCCTTTTCCAAGACATTATAAGGGATTCACATGGTAATATTACCAAATGCAAGATGCACGATCTTGTGCATGATCTTGCAAAGCATGTATCAAATGCAATGAACACACACTCACGCTTTTTGAAGGAAGTTCCCAAAGACTTCAATTTGCATAGCTATAAATCTCTACGTGTCTTAAATTTATACAAGGCAGACATTGACAAGTTGCCAATTTCAATTGGAAAGTTGAGACACTTGAGGTATTTGAATGTTATGGGAACAAATATCAAAGCATTTCCCAAATCAATTGGTCAACTTTATTACCTGCAGACATTAAAAATGCCTTATCACATTGAAGAGTTCCCAAGAGAAATTGCAAGTTTGACCAACTTGAGACATATTTATTTTGGTAAATTTGTGAAAGTTCCTGCTGGGATATTGGGAAGATTGACTAATCTCCGATCATTACCTTCTCTAAGAGTGGGTGAGGAGACTGGTTCTGGGATTAAGGAGTTGGGTGGTTTAATCCACTTGCGGGACACCTTGTCTATTTATAGTCTGGAACATGTGAGAGATGGAGAAGAAGCAGAGAAAGCAAAGTTAGCTGAGAAGGAATACATACGCAAGTTAACTCTTGAGTGGAAGCAGAGTAGACCAAGCAACAATGTTGAGAATGAAGAAGGTGTTCTTGAAGGGCTGCGACCGCATTCTAATTTGGAATTTTTGGAGATTAAGGGGTTCATGGGTACCAAGTTTCCATCATGGTTATTGCCGTCCAAGAACTTGAAAGAGATTGAATTATTGGGGTGCAACAAATGTGAAGGAGTCCCAGTACTTGGCCATCTGCCCCATCTTATACATATTAAGATCAAGACCATGCAGAACCTAAGGTGTTTGGGGTCTGAGTTTTATGGTTATGATCACATATGCAATGTGGCTCCCACGAGTGAGAAGACAATGGTTCTGTTTCCAGCATTGAAAACATTGCATATTGAGGAGGCTGAAAATCTAGTAGAATGGATGGAAGCAGAAGTGTTGCCCGGAGAAAGATTAAGGGTGTTTCCTTGCCTTGAGGAGTTGACTCTGATAAAGTGTAACCAGTTGAGAAGTGCTCCTAGCCATTTTCCATCTCTCAAAAAGTTGGTAATGGAAGAAGTGGATAGCAGCATGCCAATAGCAAGTATTCTAAGCAATGAACTAACCACTCTCACTTCTCTCGAAATAAGAGATGTCAAGAGACTTACTTGTCTGCCAGAAGGCATGTTGGAAAACAACAAAAATCTGGCATATCTGAAGATATGTGGTTGTAATGAGTTAACTTGTATTGCTCCCCATGGGGTTCAGTACTGCTGCGAGTCTCTTCGGTCGGTGCGTATTTGGTATTGTACCAATCTGAGGTATTTACCTGATGGGCTACGCCCTCTCTCTCTAGAGGACTTGGAAATATATTCTTGCCCCCGTCTAGAGTCCATCTCAATCCTACACGGTGGCCTCCCATCTCTCCGTAGATTGTTTGTCGGTTGGTGTGATCAGTTATCCAGTCTAATCACATGCCACCTCCCATCGCTACGTGAGTTAGAGGTGGAGTCGTGTTCTCAATTATCAAGCATACCGAGTGGCTATTGCACCTCTCTTGAGAATTTGACTGTGACAGGGTGTGATAAAATAACATATCTTCCGATCGACAGCCCCACATCCCTCCACAACTTGTCTGTAAGTAATGTAAAGTGTCTTCCAAATTTACACGGCGGCTTCACATCCCTCCGTCAATTGACAATCGAAGAGTCTGAGAGTACGCAAATTGAGGTAGAATTTTGTGCTCCTCTTCAAATCCTCGTCTCTCTTCAAGAGTTGCATATAAGATTTTGCAATAATCTGGAGTCTATTCCAAGTTTAGAAAAGCTCACATCTCTCCGCTGCTTGGAAATTTCTTATTGTCTTGAATTGAGGTGTCTACCCAGTGGGTTAGCAATAGCATCCCCACTCTGCCTCACTAGTTTGAAGAGCTTGGACATTGGCCCGTTTTGGGATGAGCTCGATACATTCCCTGCTATTCAGGTTATACCACAACTTGAATCATTAACATTGCTAGGGTGGCCTAAGCTCAAGTCTCTGCCTGAACAAATTCAACACTTCACTTCTTTGACGTCTTTGAGTATAGTAGGCTTTCTCGGTGTAGAGGCTATTCCAGAATGGTTAGGAAAGCTTGCATCTCTCGAGTACCTAGGTATTTTTGACTGCAAGAACTTGATGTATCTACCATCTATTGAAGCTATGCAACGCCTCACCAAATTAAACGGTATACGCATCTTTGGATGTCCCCTTCTGAGTGAAAGATGCATGGAGGAGAGCGGCCCAGAGTGGCCTAAGATCTGTCAAATCCCTGATATTTCAAGTAAGCCTTTTCCAGTGACACACCAACTGCAAGAAAAATATGTGCCTACGGGTGTGTGTCGAGTTGCAGAATATTACTGTCGTCCTGGGTTAAAGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

1306

Amino Acids

148.37

Weight (kDa)

6.21

Isoelectric Point (pI)

49.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 12 - 96 5.3e-18 Rx N-terminal domain
NB-ARC PF00931 191 - 351 3e-36 NB-ARC domain
NACHT PF05729 198 - 335 2e-06 NACHT domain
WHD_DRP PF23559 435 - 509 5.2e-23 Disease resistance protein Winged helix domain
LRR_14 PF23598 530 - 772 4.1e-31 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 644 - 768 9.6e-36 R13L1/DRL21 LRRs
LRR_R13L1-DRL21 PF25019 1182 - 1241 7.6e-06 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000029)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13530 FvH4_4g18270 FvH4_6g12200 FvH4_6g12460 FvH4_6g12461 FvH4_6g13450 FvH4_6g15090 FvH4_6g15220 FvH4_6g15230 FvH4_6g15250 FvH4_6g15251 FvH4_6g15340 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47980 FvH4_6g47980 FvH4_6g47980 FvH4_6g48170 FvH4_6g48310 FvH4_6g48310 FvH4_6g48850 FvH4_6g48881 FvH4_7g11830
malus_domestica MD02G1059900.v1.1 MD02G1069600.v1.1 MD02G1069700.v1.1 MD02G1070100.v1.1 MD02G1070200.v1.1 MD02G1070300.v1.1 MD02G1070800.v1.1 MD02G1070900.v1.1 MD02G1071200.v1.1 MD02G1071400.v1.1 MD02G1071900.v1.1 MD02G1075200.v1.1 MD03G1048000.v1.1 MD03G1049100.v1.1 MD03G1049200.v1.1 MD03G1052500.v1.1 MD03G1054100.v1.1 MD03G1054300.v1.1 MD03G1054400.v1.1 MD04G1113400.v1.1 MD04G1211100.v1.1 MD04G1211200.v1.1 MD05G1174900.v1.1 MD05G1175000.v1.1 MD05G1175900.v1.1 MD05G1243400.v1.1 MD07G1031500.v1.1 MD07G1031600.v1.1 MD07G1032500.v1.1 MD11G1046800.v1.1 MD11G1046900.v1.1 MD11G1047000.v1.1 MD11G1050400.v1.1 MD11G1050600.v1.1 MD11G1050800.v1.1 MD11G1051100.v1.1 MD11G1051600.v1.1 MD11G1051700.v1.1 MD11G1054600.v1.1 MD11G1055600.v1.1 MD11G1055700.v1.1 MD11G1055800.v1.1 MD11G1056000.v1.1 MD12G1126600.v1.1 MD12G1126700.v1.1 MD12G1126800.v1.1 MD12G1127300.v1.1 MD12G1127600.v1.1 MD12G1127900.v1.1 MD12G1128100.v1.1 MD12G1128300.v1.1 MD15G1261500.v1.1
prunus_persica Prupe.1G010700_v2.0.a1 Prupe.1G010800_v2.0.a1 Prupe.1G011000_v2.0.a1 Prupe.1G159600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163700_v2.0.a1 Prupe.1G163700_v2.0.a1 Prupe.1G163800_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G235500_v2.0.a1 Prupe.2G067400_v2.0.a1 Prupe.2G067500_v2.0.a1 Prupe.2G111700_v2.0.a1 Prupe.2G111800_v2.0.a1 Prupe.3G012000_v2.0.a1 Prupe.6G243400_v2.0.a1 Prupe.6G243500_v2.0.a1 Prupe.6G243600_v2.0.a1 Prupe.6G243700_v2.0.a1 Prupe.6G243800_v2.0.a1 Prupe.6G243900_v2.0.a1
pyrus_communis pycom02g04860 pycom02g04880 pycom02g04890 pycom02g05510 pycom02g05520 pycom02g05600 pycom02g05930 pycom02g06000 pycom02g06010 pycom03g03800 pycom03g03860 pycom03g03880 pycom03g03890 pycom03g03910 pycom03g03920 pycom03g04200 pycom03g04290 pycom03g04300 pycom03g04310 pycom03g04320 pycom03g09260 pycom04g10150 pycom04g10160 pycom04g10170 pycom05g16180 pycom05g16190 pycom05g16240 pycom05g21980 pycom05g21990 pycom07g02280 pycom11g03800 pycom11g03810 pycom11g04080 pycom11g04140 pycom11g04150 pycom11g04160 pycom11g04570 pycom11g04580 pycom11g04590 pycom11g04610 pycom12g12470 pycom12g12490 pycom13g22050
rosa_chinensis RchiOBHm_Chr1g0317761 RchiOBHm_Chr1g0317821 RchiOBHm_Chr1g0317831 RchiOBHm_Chr1g0317871 RchiOBHm_Chr1g0350501 RchiOBHm_Chr2g0107631 RchiOBHm_Chr3g0452091 RchiOBHm_Chr3g0464001 RchiOBHm_Chr3g0464281 RchiOBHm_Chr3g0466331 RchiOBHm_Chr3g0467341 RchiOBHm_Chr3g0467381 RchiOBHm_Chr3g0467731 RchiOBHm_Chr3g0468291 RchiOBHm_Chr3g0468321 RchiOBHm_Chr3g0468341 RchiOBHm_Chr3g0468391 RchiOBHm_Chr3g0468411 RchiOBHm_Chr3g0468571 RchiOBHm_Chr3g0468591 RchiOBHm_Chr3g0490721 RchiOBHm_Chr3g0490751 RchiOBHm_Chr3g0490761 RchiOBHm_Chr3g0490771 RchiOBHm_Chr3g0490951 RchiOBHm_Chr3g0491001 RchiOBHm_Chr3g0491011 RchiOBHm_Chr4g0412461 RchiOBHm_Chr4g0414161 RchiOBHm_Chr4g0414181 RchiOBHm_Chr4g0414191 RchiOBHm_Chr4g0414281 RchiOBHm_Chr4g0414441 RchiOBHm_Chr4g0414521 RchiOBHm_Chr4g0414531 RchiOBHm_Chr4g0417011 RchiOBHm_Chr4g0417021 RchiOBHm_Chr4g0417041 RchiOBHm_Chr4g0417071 RchiOBHm_Chr4g0417101 RchiOBHm_Chr4g0417531 RchiOBHm_Chr4g0417641 RchiOBHm_Chr4g0417651 RchiOBHm_Chr4g0417701 RchiOBHm_Chr4g0417731 RchiOBHm_Chr4g0417741 RchiOBHm_Chr4g0417781 RchiOBHm_Chr4g0418751 RchiOBHm_Chr4g0418791 RchiOBHm_Chr4g0418861 RchiOBHm_Chr4g0418881 RchiOBHm_Chr4g0418901 RchiOBHm_Chr4g0422451 RchiOBHm_Chr4g0422461 RchiOBHm_Chr4g0422471 RchiOBHm_Chr4g0422541 RchiOBHm_Chr4g0422561 RchiOBHm_Chr4g0422591 RchiOBHm_Chr4g0422651 RchiOBHm_Chr4g0422661 RchiOBHm_Chr5g0003251 RchiOBHm_Chr5g0003261 RchiOBHm_Chr5g0055871 RchiOBHm_Chr7g0204701 RchiOBHm_Chr7g0204741
rosa_laevigata RLG00000007607 RLG00000007932 RLG00000017606 RLG00000024418 RLG00000025629 RLG00000030586
rosa_multiflora Rmu_co7959167.1_g000001 Rmu_co8021330.1_g000001 Rmu_co8132128.1_g000001 Rmu_co8224744.1_g000001 Rmu_co8281865.1_g000001 Rmu_co8298487.1_g000001 Rmu_co8319035.1_g000001 Rmu_co8380035.1_g000001 Rmu_co8385371.1_g000001 Rmu_co8398173.1_g000001 Rmu_co8423363.1_g000001 Rmu_co8438275.1_g000001 Rmu_co8474729.1_g000001 Rmu_sc0000057.1_g000008 Rmu_sc0000350.1_g000023 Rmu_sc0000480.1_g000005 Rmu_sc0000654.1_g000021 Rmu_sc0000654.1_g000029 Rmu_sc0000654.1_g000032 Rmu_sc0000654.1_g000041 Rmu_sc0000654.1_g000045 Rmu_sc0000772.1_g000002 Rmu_sc0000772.1_g000041 Rmu_sc0000808.1_g000040 Rmu_sc0000830.1_g000062 Rmu_sc0000830.1_g000065 Rmu_sc0000830.1_g000072 Rmu_sc0000830.1_g000073 Rmu_sc0000935.1_g000020 Rmu_sc0000935.1_g000024 Rmu_sc0000935.1_g000026 Rmu_sc0000935.1_g000027 Rmu_sc0000935.1_g000031 Rmu_sc0000935.1_g000033 Rmu_sc0000962.1_g000033 Rmu_sc0000962.1_g000036 Rmu_sc0000962.1_g000063 Rmu_sc0000962.1_g000064 Rmu_sc0000962.1_g000065 Rmu_sc0001029.1_g000007 Rmu_sc0001063.1_g000014 Rmu_sc0001149.1_g000010 Rmu_sc0001149.1_g000011 Rmu_sc0001358.1_g000009 Rmu_sc0001448.1_g000003 Rmu_sc0001448.1_g000004 Rmu_sc0001729.1_g000005 Rmu_sc0001729.1_g000007 Rmu_sc0001729.1_g000020 Rmu_sc0001729.1_g000023 Rmu_sc0001793.1_g000015 Rmu_sc0002494.1_g000018 Rmu_sc0002494.1_g000019 Rmu_sc0002604.1_g000022 Rmu_sc0002922.1_g000011 Rmu_sc0003008.1_g000009 Rmu_sc0003221.1_g000061 Rmu_sc0003221.1_g000062 Rmu_sc0003459.1_g000014 Rmu_sc0003480.1_g000015 Rmu_sc0003541.1_g000016 Rmu_sc0003541.1_g000020 Rmu_sc0004035.1_g000001 Rmu_sc0004035.1_g000005 Rmu_sc0004035.1_g000011 Rmu_sc0004142.1_g000004 Rmu_sc0004142.1_g000010 Rmu_sc0004353.1_g000008 Rmu_sc0004616.1_g000009 Rmu_sc0004616.1_g000010 Rmu_sc0005231.1_g000004 Rmu_sc0006380.1_g000025 Rmu_sc0006492.1_g000010 Rmu_sc0006895.1_g000001 Rmu_sc0006895.1_g000002 Rmu_sc0006895.1_g000005 Rmu_sc0007034.1_g000004 Rmu_sc0007104.1_g000006 Rmu_sc0008990.1_g000003 Rmu_sc0008990.1_g000004 Rmu_sc0009106.1_g000003 Rmu_sc0009516.1_g000002 Rmu_sc0009516.1_g000003 Rmu_sc0009516.1_g000004 Rmu_sc0009516.1_g000005 Rmu_sc0009645.1_g000001 Rmu_sc0010274.1_g000001 Rmu_sc0010274.1_g000002 Rmu_sc0010419.1_g000003 Rmu_sc0010917.1_g000017 Rmu_sc0011213.1_g000001 Rmu_sc0011228.1_g000007 Rmu_sc0011538.1_g000011 Rmu_sc0011538.1_g000014 Rmu_sc0011538.1_g000015 Rmu_sc0012211.1_g000006 Rmu_sc0012351.1_g000003 Rmu_sc0012351.1_g000005 Rmu_sc0012915.1_g000002 Rmu_sc0013088.1_g000001 Rmu_sc0013459.1_g000001 Rmu_sc0013765.1_g000004 Rmu_sc0013765.1_g000005 Rmu_sc0014003.1_g000012 Rmu_sc0014003.1_g000014 Rmu_sc0014698.1_g000001 Rmu_sc0015740.1_g000001 Rmu_sc0016429.1_g000003 Rmu_sc0018885.1_g000001 Rmu_sc0020345.1_g000001 Rmu_sc0027791.1_g000001 Rmu_sc0037325.1_g000001 Rmu_ssc0000010.1_g000024 Rmu_ssc0000010.1_g000025 Rmu_ssc0000083.1_g000021 Rmu_ssc0000340.1_g000002 Rmu_ssc0000386.1_g000002 Rmu_ssc0000386.1_g000024 Rmu_ssc0000386.1_g000025 Rmu_ssc0000386.1_g000034 Rmu_ssc0000386.1_g000037 Rmu_ssc0000477.1_g000001
rosa_roxburghii Rroxscaffold_161G00448010 Rroxscaffold_164G00436080 Rroxscaffold_1G00024500 Rroxscaffold_2G00124290 Rroxscaffold_3G00222940 Rroxscaffold_3G00227440 Rroxscaffold_4G00304810 Rroxscaffold_4G00330180 Rroxscaffold_4G00330200 Rroxscaffold_5G00356620 Rroxscaffold_5G00358170 Rroxscaffold_5G00360880 Rroxscaffold_5G00361220 Rroxscaffold_5G00361950 Rroxscaffold_5G00361960 Rroxscaffold_5G00361990 Rroxscaffold_5G00362370 Rroxscaffold_5G00364540 Rroxscaffold_5G00364550 Rroxscaffold_5G00364580 Rroxscaffold_5G00364600 Rroxscaffold_6G00393290 Rroxscaffold_6G00412680 Rroxscaffold_6G00412790 Rroxscaffold_6G00413470 Rroxscaffold_6G00413720 Rroxscaffold_6G00416070 Rroxscaffold_7G00205400
rosa_rugosa Rorug01G0017300 Rorug01G0017400 Rorug01G0018000 Rorug01G0018100 Rorug01G0211500 Rorug02G0638200 Rorug03G0070000 Rorug03G0071200 Rorug03G0081000 Rorug03G0086500 Rorug03G0089300 Rorug03G0095300 Rorug03G0096000 Rorug03G0096000 Rorug04G0055000 Rorug04G0078300 Rorug04G0104100.1 Rorug04G0113800 Rorug04G0126700 Rorug04G0128000 Rorug04G0145900 Rorug04G0148700 Rorug04G0149100 Rorug04G0149100 Rorug04G0149200 Rorug04G0149300 Rorug04G0154900 Rorug04G0180400 Rorug04G0180500 Rorug04G0180700 Rorug04G0180800 Rorug04G0401500 Rorug04G0402100 Rorug05G0288600 Rorug05G0334100 Rorug07G0176400
rosa_samantha Rh1DG043200 Rh1DG043500 Rh1DG043900 Rh1DG222800 Rh3CG039900 Rh3CG156200 Rh3CG328500 Rh3CG328800 Rh3DG165000 Rh4AG208400 Rh4BG205600 Rh4BG213900 Rh4BG243900 Rh4CG198800 Rh4DG168600 Rh4DG180100 Rh4DG180300 Rh4DG180600 Rh4DG181200 Rh4DG181600 Rh4DG181700 Rh4DG183700 Rh4DG184000 Rh4DG184400 Rh4DG184700 Rh4DG206100 Rh4DG206200 Rh4DG206300 Rh4DG215600 Rh4DG238700 Rh4DG238900 Rh5DG390300
rosa_wichuraiana Rw0G005050 Rw0G009260 Rw0G009280 Rw0G015600 Rw0G023570 Rw1G002140 Rw1G002170 Rw1G002210 Rw1G002240 Rw1G019500 Rw2G015490 Rw3G003020 Rw3G010900 Rw3G012030 Rw3G012790 Rw3G013050 Rw3G013540 Rw3G013640 Rw3G013650 Rw3G026050 Rw3G026070 Rw4G015740 Rw4G015790 Rw4G015910 Rw4G015930 Rw4G015950 Rw4G017900 Rw4G017930 Rw4G018440 Rw4G018450 Rw4G018530 Rw4G020720 Rw4G020760 Rw5G019250 Rw5G034370 Rw7G018700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1466
AasI GACNNNNNNGTC 1 cut(s) 2670
AatII GACGTC 1 cut(s) 3575
Acc36I ACCTGC 1 cut(s) 1758
Acc65I GGTACC 1 cut(s) 2171
AccB1I GGYRCC 1 cut(s) 2171
AccB7I CCANNNNNTGG 2 cut(s) 34, 2261
AccBSI CCGCTC 2 cut(s) 62, 3777
AccI GTMKAC 3 cut(s) 2077, 3379, 3727
AccII CGCG 1 cut(s) 163
AciI CCGC 9 cut(s) 60, 161, 435, 943, 1960, 2129, 3174, 3340, 3777
AclWI GGATC 1 cut(s) 1052
AcoI YGGCCR 2 cut(s) 597, 2263
AcsI RAATTY 9 cut(s) 8, 1624, 1838, 2144, 3064, 3163, 3236, 3351, 3549
AcuI CTGAAG 2 cut(s) 1049, 2738
AcyI GRCGYC 1 cut(s) 3572
AfaI GTAC 9 cut(s) 650, 774, 1119, 2173, 2259, 2771, 2812, 3220, 3647
AflIII ACRYGT 2 cut(s) 1615, 1990
AhdI GACNNNNNGTC 1 cut(s) 1969
AhlI ACTAGT 1 cut(s) 3419
AjnI CCWGG 2 cut(s) 27, 3904
AjuI GAANNNNNNNTTGG 4 cut(s) 617, 649, 1169, 1201
Alw21I GWGCWC 3 cut(s) 2539, 3247, 3462
Alw26I GTCTC 8 cut(s) 965, 1669, 1813, 1910, 2656, 2787, 3268, 3540
AlwI GGATC 1 cut(s) 1052
Ama87I CYCGRG 2 cut(s) 484, 3641
AoxI GGCC 7 cut(s) 597, 2263, 2914, 3442, 3521, 3778, 3788
ApeKI GCWGC 7 cut(s) 109, 443, 767, 2122, 2589, 2775, 3342
ApoI RAATTY 9 cut(s) 8, 1624, 1838, 2144, 3064, 3163, 3236, 3351, 3549
ArsI GACNNNNNNTTYG 2 cut(s) 659, 691
Asp700I GAANNNNTTC 2 cut(s) 2109, 3549
Asp718I GGTACC 1 cut(s) 2171
AspA2I CCTAGG 1 cut(s) 3649
AspLEI GCGC 1 cut(s) 1155
AspS9I GGNCC 3 cut(s) 1342, 3443, 3779
AsuC2I CCSGG 1 cut(s) 2466
AsuHPI GGTGA 4 cut(s) 49, 208, 1922, 3703
AvaI CYCGRG 2 cut(s) 484, 3641
AvaII GGWCC 1 cut(s) 1342
AvrII CCTAGG 1 cut(s) 3649
AxyI CCTNAGG 1 cut(s) 2312
BalI TGGCCA 2 cut(s) 599, 2265
BanI GGYRCC 1 cut(s) 2171
BanII GRGCYC 1 cut(s) 3462
BarI GAAGNNNNNNTAC 4 cut(s) 960, 992, 3141, 3173
BauI CACGAG 1 cut(s) 2368
BbsI GAAGAC 3 cut(s) 632, 2384, 3149
Bbv12I GWGCWC 3 cut(s) 2539, 3247, 3462
BbvI GCAGC 7 cut(s) 96, 455, 754, 2109, 2601, 2762, 3329
BceAI ACGGC 2 cut(s) 2182, 3187
BciT130I CCWGG 2 cut(s) 29, 3906
BclI TGATCA 3 cut(s) 885, 2344, 2953
BcnI CCSGG 1 cut(s) 2466
BcoDI GTCTC 8 cut(s) 965, 1669, 1813, 1910, 2656, 2787, 3268, 3540
BcuI ACTAGT 1 cut(s) 3419
BfmI CTRYAG 3 cut(s) 768, 780, 1751
BfuAI ACCTGC 1 cut(s) 1758
BglII AGATCT 1 cut(s) 3795
BlnI CCTAGG 1 cut(s) 3649
BmcAI AGTACT 2 cut(s) 2259, 2771
Bme1390I CCNGG 3 cut(s) 29, 2466, 3906
Bme18I GGWCC 1 cut(s) 1342
BmeRI GACNNNNNGTC 1 cut(s) 1969
BmeT110I CYCGRG 2 cut(s) 484, 3641
BmgT120I GGNCC 3 cut(s) 1342, 3443, 3779
BmiI GGNNCC 2 cut(s) 2173, 2364
BmrFI CCNGG 3 cut(s) 29, 2466, 3906
BmrI ACTGGG 2 cut(s) 2249, 3378
BmsI GCATC 8 cut(s) 139, 389, 430, 1491, 3410, 3644, 3741, 3752
BmuI ACTGGG 2 cut(s) 2249, 3378
BpiI GAAGAC 3 cut(s) 632, 2384, 3149
BplI GAGNNNNNCTC 4 cut(s) 2521, 2553, 2882, 2914
BpmI CTGGAG 1 cut(s) 3323
Bpu10I CCTNAGC 1 cut(s) 3525
BpuMI CCSGG 1 cut(s) 2466
BsaAI YACGTR 2 cut(s) 1616, 2996
BsaBI GATNNNNATC 1 cut(s) 1177
BsaHI GRCGYC 1 cut(s) 3572
BsaJI CCNNGG 5 cut(s) 27, 980, 2758, 3649, 3905
BsaXI ACNNNNNCTCC 6 cut(s) 168, 198, 518, 548, 2241, 2271
Bse1I ACTGG 6 cut(s) 1924, 2255, 2524, 2964, 3384, 3833
Bse21I CCTNAGG 1 cut(s) 2312
Bse3DI GCAATG 6 cut(s) 795, 1551, 2362, 2408, 2623, 3509
Bse8I GATNNNNATC 1 cut(s) 1177
BseBI CCWGG 2 cut(s) 29, 3906
BseDI CCNNGG 5 cut(s) 27, 980, 2758, 3649, 3905
BseJI GATNNNNATC 1 cut(s) 1177
BseMI GCAATG 6 cut(s) 795, 1551, 2362, 2408, 2623, 3509
BseMII CTCAG 5 cut(s) 2022, 2319, 2810, 3204, 3743
BseNI ACTGG 6 cut(s) 1924, 2255, 2524, 2964, 3384, 3833
BseRI GAGGAG 6 cut(s) 539, 1928, 2435, 2513, 3237, 3785
BseXI GCAGC 7 cut(s) 96, 455, 754, 2109, 2601, 2762, 3329
BseYI CCCAGC 1 cut(s) 1856
Bsh1236I CGCG 1 cut(s) 163
Bsh1285I CGRYCG 3 cut(s) 2129, 2792, 3108
BshFI GGCC 7 cut(s) 599, 2265, 2916, 3444, 3523, 3780, 3790
BshNI GGYRCC 1 cut(s) 2171
BsiEI CGRYCG 3 cut(s) 2129, 2792, 3108
BsiHKAI GWGCWC 3 cut(s) 2539, 3247, 3462
BsiHKCI CYCGRG 2 cut(s) 484, 3641
BsiSI CCGG 2 cut(s) 265, 2466
BslFI GGGAC 5 cut(s) 850, 1432, 1976, 2237, 3729
BsmAI GTCTC 8 cut(s) 965, 1669, 1813, 1910, 2656, 2787, 3268, 3540
BsmBI CGTCTC 1 cut(s) 3268
BsmFI GGGAC 5 cut(s) 850, 1432, 1976, 2237, 3729
BsmI GAATGC 1 cut(s) 2131
BsnI GGCC 7 cut(s) 599, 2265, 2916, 3444, 3523, 3780, 3790
BsoBI CYCGRG 2 cut(s) 484, 3641
Bsp1286I GDGCHC 3 cut(s) 2539, 3247, 3462
Bsp19I CCATGG 1 cut(s) 2758
BspACI CCGC 9 cut(s) 60, 161, 435, 943, 1960, 2129, 3174, 3340, 3777
BspANI GGCC 7 cut(s) 599, 2265, 2916, 3444, 3523, 3780, 3790
BspCNI CTCAG 5 cut(s) 2023, 2320, 2811, 3205, 3744
BspFNI CGCG 1 cut(s) 163
BspLI GGNNCC 2 cut(s) 2173, 2364
BspMAI CTGCAG 2 cut(s) 772, 1755
BspMI ACCTGC 1 cut(s) 1758
BspPI GGATC 1 cut(s) 1052
BspQI GCTCTTC 1 cut(s) 3422
BspT107I GGYRCC 1 cut(s) 2171
BsrBI CCGCTC 2 cut(s) 62, 3777
BsrDI GCAATG 6 cut(s) 795, 1551, 2362, 2408, 2623, 3509
BsrI ACTGG 6 cut(s) 1924, 2255, 2524, 2964, 3384, 3833
BssECI CCNNGG 5 cut(s) 27, 980, 2758, 3649, 3905
BssNAI GTATAC 1 cut(s) 3728
BssNI GRCGYC 1 cut(s) 3572
BssSI CACGAG 1 cut(s) 2368
BssT1I CCWWGG 2 cut(s) 2758, 3649
Bst1107I GTATAC 1 cut(s) 3728
Bst2BI CACGAG 1 cut(s) 2368
Bst2UI CCWGG 2 cut(s) 29, 3906
Bst4CI ACNGT 7 cut(s) 967, 1275, 1376, 2912, 3073, 3725, 3899
Bst6I CTCTTC 8 cut(s) 855, 981, 1776, 2790, 3201, 3255, 3273, 3422
BstACI GRCGYC 1 cut(s) 3572
BstBAI YACGTR 2 cut(s) 1616, 2996
BstC8I GCNNGC 2 cut(s) 2594, 3633
BstDSI CCRYGG 1 cut(s) 2758
BstEII GGTNACC 1 cut(s) 37
BstFNI CGCG 1 cut(s) 163
BstHHI GCGC 1 cut(s) 1155
BstMAI GTCTC 8 cut(s) 965, 1669, 1813, 1910, 2656, 2787, 3268, 3540
BstMCI CGRYCG 3 cut(s) 2129, 2792, 3108
BstMWI GCNNNNNNNGC 6 cut(s) 265, 443, 2018, 2027, 2128, 3520
BstNI CCWGG 2 cut(s) 29, 3906
BstNSI RCATGY 6 cut(s) 767, 1535, 1994, 2596, 2689, 2979
BstPI GGTNACC 1 cut(s) 37
BstSCI CCNGG 3 cut(s) 27, 2464, 3904
BstSFI CTRYAG 3 cut(s) 768, 780, 1751
BstUI CGCG 1 cut(s) 163
BstV1I GCAGC 7 cut(s) 96, 455, 754, 2109, 2601, 2762, 3329
BstV2I GAAGAC 3 cut(s) 632, 2384, 3149
BstX2I RGATCY 1 cut(s) 3795
BstYI RGATCY 1 cut(s) 3795
BstZ17I GTATAC 1 cut(s) 3728
Bsu36I CCTNAGG 1 cut(s) 2312
BsuRI GGCC 7 cut(s) 599, 2265, 2916, 3444, 3523, 3780, 3790
BtgI CCRYGG 1 cut(s) 2758
BtgZI GCGATG 1 cut(s) 2973
BtsI GCAGTG 2 cut(s) 119, 952
BtsIMutI CAGTG 6 cut(s) 119, 906, 952, 1372, 3391, 3840
BveI ACCTGC 1 cut(s) 1758
Cac8I GCNNGC 2 cut(s) 2594, 3633
CfoI GCGC 1 cut(s) 1155
Cfr13I GGNCC 3 cut(s) 1342, 3443, 3779
Csp6I GTAC 9 cut(s) 649, 773, 1118, 2172, 2258, 2770, 2811, 3219, 3646
CspCI CAANNNNNGTGG 4 cut(s) 1090, 1119, 1125, 1154
CviQI GTAC 9 cut(s) 649, 773, 1118, 2172, 2258, 2770, 2811, 3219, 3646
DraI TTTAAA 1 cut(s) 493
DrdI GACNNNNNNGTC 1 cut(s) 2670
DriI GACNNNNNGTC 1 cut(s) 1969
DseDI GACNNNNNNGTC 1 cut(s) 2670
EaeI YGGCCR 2 cut(s) 597, 2263
Eam1104I CTCTTC 8 cut(s) 855, 981, 1776, 2790, 3201, 3255, 3273, 3422
Eam1105I GACNNNNNGTC 1 cut(s) 1969
EarI CTCTTC 8 cut(s) 855, 981, 1776, 2790, 3201, 3255, 3273, 3422
Ecl136II GAGCTC 1 cut(s) 3460
Eco130I CCWWGG 2 cut(s) 2758, 3649
Eco24I GRGCYC 1 cut(s) 3462
Eco32I GATATC 1 cut(s) 1432
Eco47I GGWCC 1 cut(s) 1342
Eco53kI GAGCTC 1 cut(s) 3460
Eco57I CTGAAG 2 cut(s) 1049, 2738
Eco81I CCTNAGG 1 cut(s) 2312
Eco88I CYCGRG 2 cut(s) 484, 3641
Eco91I GGTNACC 1 cut(s) 37
EcoICRI GAGCTC 1 cut(s) 3460
EcoO65I GGTNACC 1 cut(s) 37
EcoRII CCWGG 2 cut(s) 27, 3904
EcoRV GATATC 1 cut(s) 1432
EcoT14I CCWWGG 2 cut(s) 2758, 3649
EcoT22I ATGCAT 1 cut(s) 3767
EcoT38I GRGCYC 1 cut(s) 3462
ErhI CCWWGG 2 cut(s) 2758, 3649
Esp3I CGTCTC 1 cut(s) 3268
FalI AAGNNNNNCTT 8 cut(s) 1322, 1354, 1353, 1385, 2097, 2129, 3811, 3843
FaqI GGGAC 5 cut(s) 850, 1432, 1976, 2237, 3729
FauI CCCGC 2 cut(s) 950, 1953
FauNDI CATATG 1 cut(s) 2351
FbaI TGATCA 3 cut(s) 885, 2344, 2953
FblI GTMKAC 3 cut(s) 2077, 3379, 3727
FriOI GRGCYC 1 cut(s) 3462
GlaI GCGC 1 cut(s) 1154
GsaI CCCAGC 1 cut(s) 1860
GsuI CTGGAG 1 cut(s) 3323
HaeIII GGCC 7 cut(s) 599, 2265, 2916, 3444, 3523, 3780, 3790
HapII CCGG 2 cut(s) 265, 2466
HhaI GCGC 1 cut(s) 1155
Hin1I GRCGYC 1 cut(s) 3572
Hin6I GCGC 1 cut(s) 1153
HinP1I GCGC 1 cut(s) 1153
HincII GTYRAC 4 cut(s) 1739, 2055, 2505, 2742
HindII GTYRAC 4 cut(s) 1739, 2055, 2505, 2742
HindIII AAGCTT 2 cut(s) 203, 3629
HpaI GTTAAC 2 cut(s) 2055, 2742
HpaII CCGG 2 cut(s) 265, 2466
HphI GGTGA 4 cut(s) 49, 208, 1922, 3703
Hpy166II GTNNAC 9 cut(s) 649, 1118, 1739, 2055, 2078, 2505, 2742, 3380, 3728
Hpy8I GTNNAC 9 cut(s) 649, 1118, 1739, 2055, 2078, 2505, 2742, 3380, 3728
HpyCH4III ACNGT 7 cut(s) 967, 1275, 1376, 2912, 3073, 3725, 3899
HpyCH4IV ACGT 3 cut(s) 1615, 2995, 3572
HpyF10VI GCNNNNNNNGC 6 cut(s) 265, 443, 2018, 2027, 2128, 3520
HpySE526I ACGT 3 cut(s) 1615, 2995, 3572
Hsp92I GRCGYC 1 cut(s) 3572
HspAI GCGC 1 cut(s) 1153
KpnI GGTACC 1 cut(s) 2175
Ksp22I TGATCA 3 cut(s) 885, 2344, 2953
KspAI GTTAAC 2 cut(s) 2055, 2742
LguI GCTCTTC 1 cut(s) 3422
LmnI GCTCC 4 cut(s) 2368, 2542, 2758, 3250
Lsp1109I GCAGC 7 cut(s) 96, 455, 754, 2109, 2601, 2762, 3329
LweI GCATC 8 cut(s) 139, 389, 430, 1491, 3410, 3644, 3741, 3752
MaeII ACGT 3 cut(s) 1615, 2995, 3572
MbiI CCGCTC 2 cut(s) 62, 3777
MfeI CAATTG 3 cut(s) 1662, 1731, 3194
MflI RGATCY 1 cut(s) 3795
MhlI GDGCHC 3 cut(s) 2539, 3247, 3462
MlsI TGGCCA 2 cut(s) 599, 2265
MluNI TGGCCA 2 cut(s) 599, 2265
MmeI TCCRAC 3 cut(s) 1150, 1369, 2670
Mox20I TGGCCA 2 cut(s) 599, 2265
Mph1103I ATGCAT 1 cut(s) 3767
MroXI GAANNNNTTC 2 cut(s) 2109, 3549
MscI TGGCCA 2 cut(s) 599, 2265
MslI CAYNNNNRTG 1 cut(s) 678
Msp20I TGGCCA 2 cut(s) 599, 2265
MspA1I CMGCKG 1 cut(s) 3342
MspI CCGG 2 cut(s) 265, 2466
MspR9I CCNGG 3 cut(s) 29, 2466, 3906
MunI CAATTG 3 cut(s) 1662, 1731, 3194
Mva1269I GAATGC 1 cut(s) 2131
MvaI CCWGG 2 cut(s) 29, 3906
MvnI CGCG 1 cut(s) 163
MwoI GCNNNNNNNGC 6 cut(s) 265, 443, 2018, 2027, 2128, 3520
NciI CCSGG 1 cut(s) 2466
NcoI CCATGG 1 cut(s) 2758
NdeI CATATG 1 cut(s) 2351
NlaIV GGNNCC 2 cut(s) 2173, 2364
NmuCI GTSAC 7 cut(s) 37, 46, 117, 904, 934, 3073, 3835
NsiI ATGCAT 1 cut(s) 3767
NspI RCATGY 6 cut(s) 767, 1535, 1994, 2596, 2689, 2979
PaeI GCATGC 1 cut(s) 2596
PaeR7I CTCGAG 1 cut(s) 3641
PciI ACATGT 1 cut(s) 1990
PciSI GCTCTTC 1 cut(s) 3422
PcsI WCGNNNNNNNCGW 1 cut(s) 2794
PctI GAATGC 1 cut(s) 2131
PdmI GAANNNNTTC 2 cut(s) 2109, 3549
PfeI GAWTC 8 cut(s) 87, 134, 727, 738, 1227, 1265, 1472, 3500
PflFI GACNNNGTC 1 cut(s) 1340
PflMI CCANNNNNTGG 2 cut(s) 34, 2261
Ple19I CGATCG 1 cut(s) 3108
Ppu21I YACGTR 2 cut(s) 1616, 2996
PscI ACATGT 1 cut(s) 1990
PsiI TTATAA 1 cut(s) 1466
Psp124BI GAGCTC 1 cut(s) 3462
Psp6I CCWGG 2 cut(s) 27, 3904
PspEI GGTNACC 1 cut(s) 37
PspFI CCCAGC 1 cut(s) 1856
PspGI CCWGG 2 cut(s) 27, 3904
PspN4I GGNNCC 2 cut(s) 2173, 2364
PspPI GGNCC 3 cut(s) 1342, 3443, 3779
PstI CTGCAG 2 cut(s) 772, 1755
PsuI RGATCY 1 cut(s) 3795
PsyI GACNNNGTC 1 cut(s) 1340
PvuI CGATCG 1 cut(s) 3108
RsaI GTAC 9 cut(s) 650, 774, 1119, 2173, 2259, 2771, 2812, 3220, 3647
RsaNI GTAC 9 cut(s) 649, 773, 1118, 2172, 2258, 2770, 2811, 3219, 3646
RseI CAYNNNNRTG 1 cut(s) 678
SacI GAGCTC 1 cut(s) 3462
SapI GCTCTTC 1 cut(s) 3422
Sau96I GGNCC 3 cut(s) 1342, 3443, 3779
ScaI AGTACT 2 cut(s) 2259, 2771
ScrFI CCNGG 3 cut(s) 29, 2466, 3906
SduI GDGCHC 3 cut(s) 2539, 3247, 3462
SfaNI GCATC 8 cut(s) 139, 389, 430, 1491, 3410, 3644, 3741, 3752
SfcI CTRYAG 3 cut(s) 768, 780, 1751
Sfr274I CTCGAG 1 cut(s) 3641
SinI GGWCC 1 cut(s) 1342
SlaI CTCGAG 1 cut(s) 3641
SmiMI CAYNNNNRTG 1 cut(s) 678
SpeI ACTAGT 1 cut(s) 3419
SphI GCATGC 1 cut(s) 2596
SsiI CCGC 9 cut(s) 60, 161, 435, 943, 1960, 2129, 3174, 3340, 3777
SspI AATATT 3 cut(s) 1424, 1486, 3893
SstI GAGCTC 1 cut(s) 3462
StyD4I CCNGG 3 cut(s) 27, 2464, 3904
StyI CCWWGG 2 cut(s) 2758, 3649
TaaI ACNGT 7 cut(s) 967, 1275, 1376, 2912, 3073, 3725, 3899
TaiI ACGT 3 cut(s) 1618, 2998, 3575
TaqI TCGA 8 cut(s) 714, 725, 2643, 3108, 3204, 3462, 3642, 3880
TaqII GACCGA 1 cut(s) 2778
TatI WGTACW 3 cut(s) 772, 2257, 2769
TauI GCSGC 3 cut(s) 62, 3177, 3780
TfiI GAWTC 8 cut(s) 87, 134, 727, 738, 1227, 1265, 1472, 3500
TscAI CASTG 6 cut(s) 126, 913, 952, 1379, 3391, 3840
TseFI GTSAC 7 cut(s) 37, 46, 117, 904, 934, 3073, 3835
TseI GCWGC 7 cut(s) 109, 443, 767, 2122, 2589, 2775, 3342
Tsp45I GTSAC 7 cut(s) 37, 46, 117, 904, 934, 3073, 3835
TspGWI ACGGA 2 cut(s) 2918, 3179
TspRI CASTG 6 cut(s) 126, 913, 952, 1379, 3391, 3840
Tth111I GACNNNGTC 1 cut(s) 1340
Van91I CCANNNNNTGG 2 cut(s) 34, 2261
VpaK11BI GGWCC 1 cut(s) 1342
XapI RAATTY 9 cut(s) 8, 1624, 1838, 2144, 3064, 3163, 3236, 3351, 3549
XbaI TCTAGA 2 cut(s) 2854, 2887
XceI RCATGY 6 cut(s) 767, 1535, 1994, 2596, 2689, 2979
XcmI CCANNNNNNNNNTGG 1 cut(s) 607
XhoI CTCGAG 1 cut(s) 3641
XmaJI CCTAGG 1 cut(s) 3649
XmiI GTMKAC 3 cut(s) 2077, 3379, 3727
XmnI GAANNNNTTC 2 cut(s) 2109, 3549
ZraI GACGTC 1 cut(s) 3573
ZrmI AGTACT 2 cut(s) 2259, 2771
Zsp2I ATGCAT 1 cut(s) 3767
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.