disease resistance
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Rx_N | PF18052 | 13 - 97 | 4.9e-20 | Rx N-terminal domain |
| NB-ARC | PF00931 | 177 - 250 | 1.8e-10 | NB-ARC domain |
| nSTAND3 | PF20720 | 200 - 313 | 3.4e-06 | Novel STAND NTPase 3 |
| NB-ARC | PF00931 | 246 - 329 | 4.6e-13 | NB-ARC domain |
| WHD_DRP | PF23559 | 416 - 489 | 7.7e-24 | Disease resistance protein Winged helix domain |
| LRR_14 | PF23598 | 499 - 814 | 3e-28 | Leucine-rich repeat region |
| LRR_R13L1-DRL21 | PF25019 | 624 - 748 | 1.5e-33 | R13L1/DRL21 LRRs |
| LRR_14 | PF23598 | 951 - 1159 | 3.4e-09 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 1153 - 1237 | 7.6e-07 | Leucine-rich repeat region |
| LRR_R13L1-DRL21 | PF25019 | 1169 - 1228 | 1e-05 | R13L1/DRL21 LRRs |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1686 |
| Acc16I | TGCGCA | 1 cut(s) | 2722 |
| Acc65I | GGTACC | 1 cut(s) | 3046 |
| AccB1I | GGYRCC | 1 cut(s) | 3046 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 2032, 2942 |
| AccBSI | CCGCTC | 1 cut(s) | 3738 |
| AccI | GTMKAC | 2 cut(s) | 156, 3337 |
| AccII | CGCG | 2 cut(s) | 731, 2323 |
| AccIII | TCCGGA | 1 cut(s) | 2968 |
| AciI | CCGC | 8 cut(s) | 1759, 2173, 2323, 2523, 2740, 3298, 3700, 3738 |
| AclWI | GGATC | 4 cut(s) | 210, 1279, 2272, 2314 |
| AcoI | YGGCCR | 1 cut(s) | 3749 |
| AdeI | CACNNNGTG | 3 cut(s) | 2858, 3149, 3562 |
| AfaI | GTAC | 9 cut(s) | 471, 717, 1062, 2052, 2199, 2714, 2837, 3007, 3048 |
| AflIII | ACRYGT | 3 cut(s) | 1555, 2606, 3332 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1909 |
| AjnI | CCWGG | 4 cut(s) | 619, 1729, 1792, 1864 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1949, 1981, 3384, 3416 |
| Alw21I | GWGCWC | 2 cut(s) | 2473, 3423 |
| AlwI | GGATC | 4 cut(s) | 210, 1279, 2272, 2314 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1865 |
| Ama87I | CYCGRG | 3 cut(s) | 2201, 2429, 3628 |
| Aor13HI | TCCGGA | 1 cut(s) | 2968 |
| ApaI | GGGCCC | 1 cut(s) | 2368 |
| AseI | ATTAAT | 1 cut(s) | 1124 |
| Asp700I | GAANNNNTTC | 6 cut(s) | 311, 395, 918, 1174, 1725, 3510 |
| Asp718I | GGTACC | 1 cut(s) | 3046 |
| AspLEI | GCGC | 4 cut(s) | 1098, 2323, 2395, 2723 |
| AspS9I | GGNCC | 7 cut(s) | 413, 1862, 2170, 2364, 2365, 3607, 3740 |
| AsuC2I | CCSGG | 1 cut(s) | 2988 |
| AsuII | TTCGAA | 1 cut(s) | 1955 |
| AsuNHI | GCTAGC | 1 cut(s) | 2137 |
| AvaI | CYCGRG | 3 cut(s) | 2201, 2429, 3628 |
| AvaII | GGWCC | 2 cut(s) | 1862, 3607 |
| AxyI | CCTNAGG | 1 cut(s) | 3042 |
| BaeGI | GKGCMC | 2 cut(s) | 2368, 3041 |
| BalI | TGGCCA | 1 cut(s) | 3751 |
| BanI | GGYRCC | 1 cut(s) | 3046 |
| BanII | GRGCYC | 2 cut(s) | 2368, 3423 |
| BbsI | GAAGAC | 2 cut(s) | 216, 3200 |
| Bbv12I | GWGCWC | 2 cut(s) | 2473, 3423 |
| BbvCI | CCTCAGC | 1 cut(s) | 30 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1224, 1258 |
| BciT130I | CCWGG | 4 cut(s) | 621, 1731, 1794, 1866 |
| BclI | TGATCA | 2 cut(s) | 1749, 2284 |
| BcnI | CCSGG | 1 cut(s) | 2988 |
| BfmI | CTRYAG | 2 cut(s) | 2412, 3370 |
| BfoI | RGCGCY | 1 cut(s) | 2396 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2017 |
| BglII | AGATCT | 1 cut(s) | 100 |
| BmcAI | AGTACT | 3 cut(s) | 471, 2199, 2714 |
| Bme1390I | CCNGG | 5 cut(s) | 621, 1731, 1794, 1866, 2988 |
| Bme18I | GGWCC | 2 cut(s) | 1862, 3607 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1909 |
| BmeT110I | CYCGRG | 3 cut(s) | 2201, 2429, 3628 |
| BmgT120I | GGNCC | 7 cut(s) | 413, 1862, 2170, 2364, 2365, 3607, 3740 |
| BmiI | GGNNCC | 2 cut(s) | 2366, 3048 |
| BmrFI | CCNGG | 5 cut(s) | 621, 1731, 1794, 1866, 2988 |
| BmrI | ACTGGG | 3 cut(s) | 2189, 2469, 2689 |
| BmtI | GCTAGC | 1 cut(s) | 2141 |
| BmuI | ACTGGG | 3 cut(s) | 2189, 2469, 2689 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2964 |
| BpiI | GAAGAC | 2 cut(s) | 216, 3200 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 473, 505 |
| BpmI | CTGGAG | 2 cut(s) | 475, 3281 |
| Bpu10I | CCTNAGC | 3 cut(s) | 30, 1302, 3486 |
| Bpu14I | TTCGAA | 1 cut(s) | 1955 |
| BpuMI | CCSGG | 1 cut(s) | 2988 |
| Bsa29I | ATCGAT | 1 cut(s) | 1921 |
| BsaAI | YACGTR | 2 cut(s) | 1556, 2607 |
| BsaBI | GATNNNNATC | 1 cut(s) | 3692 |
| BsaI | GGTCTC | 3 cut(s) | 279, 476, 2867 |
| BsaJI | CCNNGG | 4 cut(s) | 45, 1522, 1730, 2296 |
| BsaWI | WCCGGW | 2 cut(s) | 1824, 2968 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 524, 554, 2181, 2211, 2455, 2485, 2916, 2946 |
| Bse1I | ACTGG | 8 cut(s) | 596, 789, 989, 1894, 2195, 2475, 2695, 2962 |
| Bse21I | CCTNAGG | 1 cut(s) | 3042 |
| Bse3DI | GCAATG | 2 cut(s) | 2348, 3666 |
| Bse8I | GATNNNNATC | 1 cut(s) | 3692 |
| BseAI | TCCGGA | 1 cut(s) | 2968 |
| BseBI | CCWGG | 4 cut(s) | 621, 1731, 1794, 1866 |
| BseCI | ATCGAT | 1 cut(s) | 1921 |
| BseDI | CCNNGG | 4 cut(s) | 45, 1522, 1730, 2296 |
| BseJI | GATNNNNATC | 1 cut(s) | 3692 |
| BseMI | GCAATG | 2 cut(s) | 2348, 3666 |
| BseMII | CTCAG | 8 cut(s) | 21, 88, 1316, 2259, 2593, 2678, 2776, 3062 |
| BseNI | ACTGG | 8 cut(s) | 596, 789, 989, 1894, 2195, 2475, 2695, 2962 |
| BseRI | GAGGAG | 6 cut(s) | 545, 844, 1361, 2447, 3431, 3746 |
| BseSI | GKGCMC | 2 cut(s) | 2368, 3041 |
| BseYI | CCCAGC | 1 cut(s) | 3433 |
| Bsh1236I | CGCG | 2 cut(s) | 731, 2323 |
| BshNI | GGYRCC | 1 cut(s) | 3046 |
| BshVI | ATCGAT | 1 cut(s) | 1921 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2473, 3423 |
| BsiHKCI | CYCGRG | 3 cut(s) | 2201, 2429, 3628 |
| BsiSI | CCGG | 4 cut(s) | 1825, 2615, 2969, 2987 |
| BslFI | GGGAC | 3 cut(s) | 304, 2177, 3690 |
| BsmBI | CGTCTC | 3 cut(s) | 493, 1801, 3226 |
| BsmFI | GGGAC | 3 cut(s) | 304, 2177, 3690 |
| BsmI | GAATGC | 2 cut(s) | 621, 962 |
| Bso31I | GGTCTC | 3 cut(s) | 279, 476, 2867 |
| BsoBI | CYCGRG | 3 cut(s) | 2201, 2429, 3628 |
| Bsp119I | TTCGAA | 1 cut(s) | 1955 |
| Bsp120I | GGGCCC | 1 cut(s) | 2364 |
| Bsp1286I | GDGCHC | 4 cut(s) | 2368, 2473, 3041, 3423 |
| Bsp13I | TCCGGA | 1 cut(s) | 2968 |
| BspACI | CCGC | 8 cut(s) | 1759, 2173, 2323, 2523, 2740, 3298, 3700, 3738 |
| BspCNI | CTCAG | 8 cut(s) | 22, 87, 1315, 2260, 2592, 2677, 2775, 3063 |
| BspDI | ATCGAT | 1 cut(s) | 1921 |
| BspEI | TCCGGA | 1 cut(s) | 2968 |
| BspFNI | CGCG | 2 cut(s) | 731, 2323 |
| BspHI | TCATGA | 1 cut(s) | 658 |
| BspLI | GGNNCC | 2 cut(s) | 2366, 3048 |
| BspMAI | CTGCAG | 1 cut(s) | 3374 |
| BspOI | GCTAGC | 1 cut(s) | 2141 |
| BspPI | GGATC | 4 cut(s) | 210, 1279, 2272, 2314 |
| BspT104I | TTCGAA | 1 cut(s) | 1955 |
| BspT107I | GGYRCC | 1 cut(s) | 3046 |
| BspTNI | GGTCTC | 3 cut(s) | 279, 476, 2867 |
| BsrBI | CCGCTC | 1 cut(s) | 3738 |
| BsrDI | GCAATG | 2 cut(s) | 2348, 3666 |
| BsrI | ACTGG | 8 cut(s) | 596, 789, 989, 1894, 2195, 2475, 2695, 2962 |
| BssECI | CCNNGG | 4 cut(s) | 45, 1522, 1730, 2296 |
| BssT1I | CCWWGG | 2 cut(s) | 45, 1522 |
| Bst2UI | CCWGG | 4 cut(s) | 621, 1731, 1794, 1866 |
| Bst4CI | ACNGT | 8 cut(s) | 487, 1812, 2297, 2416, 2858, 3005, 3241, 3366 |
| Bst6I | CTCTTC | 6 cut(s) | 520, 747, 924, 3081, 3120, 3231 |
| BstBAI | YACGTR | 2 cut(s) | 1556, 2607 |
| BstBI | TTCGAA | 1 cut(s) | 1955 |
| BstC8I | GCNNGC | 5 cut(s) | 60, 412, 962, 2139, 2531 |
| BstDSI | CCRYGG | 1 cut(s) | 2296 |
| BstFNI | CGCG | 2 cut(s) | 731, 2323 |
| BstH2I | RGCGCY | 1 cut(s) | 2396 |
| BstHHI | GCGC | 4 cut(s) | 1098, 2323, 2395, 2723 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 224, 501, 1958, 2017, 3443 |
| BstNI | CCWGG | 4 cut(s) | 621, 1731, 1794, 1866 |
| BstNSI | RCATGY | 3 cut(s) | 1475, 2533, 3336 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2964 |
| BstSCI | CCNGG | 5 cut(s) | 619, 1729, 1792, 1864, 2986 |
| BstSFI | CTRYAG | 2 cut(s) | 2412, 3370 |
| BstSLI | GKGCMC | 2 cut(s) | 2368, 3041 |
| BstUI | CGCG | 2 cut(s) | 731, 2323 |
| BstV2I | GAAGAC | 2 cut(s) | 216, 3200 |
| BstX2I | RGATCY | 3 cut(s) | 100, 202, 2264 |
| BstYI | RGATCY | 3 cut(s) | 100, 202, 2264 |
| Bsu15I | ATCGAT | 1 cut(s) | 1921 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3042 |
| BsuTUI | ATCGAT | 1 cut(s) | 1921 |
| BtgI | CCRYGG | 1 cut(s) | 2296 |
| BtgZI | GCGATG | 2 cut(s) | 519, 3047 |
| BtsIMutI | CAGTG | 4 cut(s) | 2421, 2672, 2969, 3246 |
| Cac8I | GCNNGC | 5 cut(s) | 60, 412, 962, 2139, 2531 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1865 |
| CciI | TCATGA | 1 cut(s) | 658 |
| CfoI | GCGC | 4 cut(s) | 1098, 2323, 2395, 2723 |
| Cfr13I | GGNCC | 7 cut(s) | 413, 1862, 2170, 2364, 2365, 3607, 3740 |
| ClaI | ATCGAT | 1 cut(s) | 1921 |
| CseI | GACGC | 3 cut(s) | 276, 737, 2535 |
| Csp6I | GTAC | 9 cut(s) | 470, 716, 1061, 2051, 2198, 2713, 2836, 3006, 3047 |
| CviQI | GTAC | 9 cut(s) | 470, 716, 1061, 2051, 2198, 2713, 2836, 3006, 3047 |
| DraI | TTTAAA | 3 cut(s) | 1131, 1369, 1890 |
| DraIII | CACNNNGTG | 3 cut(s) | 2858, 3149, 3562 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1909 |
| EaeI | YGGCCR | 1 cut(s) | 3749 |
| Eam1104I | CTCTTC | 6 cut(s) | 520, 747, 924, 3081, 3120, 3231 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1909 |
| EarI | CTCTTC | 6 cut(s) | 520, 747, 924, 3081, 3120, 3231 |
| Ecl136II | GAGCTC | 1 cut(s) | 3421 |
| Eco130I | CCWWGG | 2 cut(s) | 45, 1522 |
| Eco147I | AGGCCT | 2 cut(s) | 2061, 2931 |
| Eco24I | GRGCYC | 2 cut(s) | 2368, 3423 |
| Eco31I | GGTCTC | 3 cut(s) | 279, 476, 2867 |
| Eco47I | GGWCC | 2 cut(s) | 1862, 3607 |
| Eco53kI | GAGCTC | 1 cut(s) | 3421 |
| Eco81I | CCTNAGG | 1 cut(s) | 3042 |
| Eco88I | CYCGRG | 3 cut(s) | 2201, 2429, 3628 |
| EcoICRI | GAGCTC | 1 cut(s) | 3421 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1862, 3607 |
| EcoRI | GAATTC | 1 cut(s) | 3428 |
| EcoRII | CCWGG | 4 cut(s) | 619, 1729, 1792, 1864 |
| EcoT14I | CCWWGG | 2 cut(s) | 45, 1522 |
| EcoT38I | GRGCYC | 2 cut(s) | 2368, 3423 |
| ErhI | CCWWGG | 2 cut(s) | 45, 1522 |
| Esp3I | CGTCTC | 3 cut(s) | 493, 1801, 3226 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1265, 1297 |
| FaqI | GGGAC | 3 cut(s) | 304, 2177, 3690 |
| FauI | CCCGC | 1 cut(s) | 3707 |
| FbaI | TGATCA | 2 cut(s) | 1749, 2284 |
| FblI | GTMKAC | 2 cut(s) | 156, 3337 |
| FriOI | GRGCYC | 2 cut(s) | 2368, 3423 |
| FspI | TGCGCA | 1 cut(s) | 2722 |
| GlaI | GCGC | 4 cut(s) | 1097, 2322, 2394, 2722 |
| GsaI | CCCAGC | 1 cut(s) | 3437 |
| GsuI | CTGGAG | 2 cut(s) | 475, 3281 |
| HaeII | RGCGCY | 1 cut(s) | 2396 |
| HapII | CCGG | 4 cut(s) | 1825, 2615, 2969, 2987 |
| HgaI | GACGC | 3 cut(s) | 276, 737, 2535 |
| HhaI | GCGC | 4 cut(s) | 1098, 2323, 2395, 2723 |
| Hin6I | GCGC | 4 cut(s) | 1096, 2321, 2393, 2721 |
| HinP1I | GCGC | 4 cut(s) | 1096, 2321, 2393, 2721 |
| HincII | GTYRAC | 6 cut(s) | 157, 843, 1815, 2293, 2439, 2679 |
| HindII | GTYRAC | 6 cut(s) | 157, 843, 1815, 2293, 2439, 2679 |
| HindIII | AAGCTT | 1 cut(s) | 1950 |
| HpaI | GTTAAC | 2 cut(s) | 843, 2293 |
| HpaII | CCGG | 4 cut(s) | 1825, 2615, 2969, 2987 |
| Hpy166II | GTNNAC | 9 cut(s) | 157, 843, 1061, 1815, 2293, 2439, 2679, 2993, 3338 |
| Hpy8I | GTNNAC | 9 cut(s) | 157, 843, 1061, 1815, 2293, 2439, 2679, 2993, 3338 |
| Hpy99I | CGWCG | 1 cut(s) | 270 |
| HpyCH4III | ACNGT | 8 cut(s) | 487, 1812, 2297, 2416, 2858, 3005, 3241, 3366 |
| HpyCH4IV | ACGT | 3 cut(s) | 1555, 2606, 2810 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 224, 501, 1958, 2017, 3443 |
| HpySE526I | ACGT | 3 cut(s) | 1555, 2606, 2810 |
| HspAI | GCGC | 4 cut(s) | 1096, 2321, 2393, 2721 |
| Kpn2I | TCCGGA | 1 cut(s) | 2968 |
| KpnI | GGTACC | 1 cut(s) | 3050 |
| Ksp22I | TGATCA | 2 cut(s) | 1749, 2284 |
| KspAI | GTTAAC | 2 cut(s) | 843, 2293 |
| LmnI | GCTCC | 4 cut(s) | 1527, 2405, 2476, 3418 |
| MaeII | ACGT | 3 cut(s) | 1555, 2606, 2810 |
| MbiI | CCGCTC | 1 cut(s) | 3738 |
| MfeI | CAATTG | 5 cut(s) | 1026, 1602, 1671, 3120, 3399 |
| MflI | RGATCY | 3 cut(s) | 100, 202, 2264 |
| MhlI | GDGCHC | 4 cut(s) | 2368, 2473, 3041, 3423 |
| MlsI | TGGCCA | 1 cut(s) | 3751 |
| MluNI | TGGCCA | 1 cut(s) | 3751 |
| MlyI | GAGTC | 5 cut(s) | 113, 1006, 2199, 3104, 3640 |
| MmeI | TCCRAC | 3 cut(s) | 289, 1312, 2089 |
| Mox20I | TGGCCA | 1 cut(s) | 3751 |
| MroI | TCCGGA | 1 cut(s) | 2968 |
| MroXI | GAANNNNTTC | 6 cut(s) | 311, 395, 918, 1174, 1725, 3510 |
| MscI | TGGCCA | 1 cut(s) | 3751 |
| MslI | CAYNNNNRTG | 2 cut(s) | 576, 684 |
| Msp20I | TGGCCA | 1 cut(s) | 3751 |
| MspA1I | CMGCKG | 3 cut(s) | 112, 410, 3702 |
| MspI | CCGG | 4 cut(s) | 1825, 2615, 2969, 2987 |
| MspR9I | CCNGG | 5 cut(s) | 621, 1731, 1794, 1866, 2988 |
| MssI | GTTTAAAC | 1 cut(s) | 1890 |
| MunI | CAATTG | 5 cut(s) | 1026, 1602, 1671, 3120, 3399 |
| Mva1269I | GAATGC | 2 cut(s) | 621, 962 |
| MvaI | CCWGG | 4 cut(s) | 621, 1731, 1794, 1866 |
| MvnI | CGCG | 2 cut(s) | 731, 2323 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 224, 501, 1958, 2017, 3443 |
| NciI | CCSGG | 1 cut(s) | 2988 |
| NheI | GCTAGC | 1 cut(s) | 2137 |
| NlaIV | GGNNCC | 2 cut(s) | 2366, 3048 |
| NmuCI | GTSAC | 9 cut(s) | 49, 116, 567, 877, 890, 2697, 2753, 2822, 3360 |
| NsbI | TGCGCA | 1 cut(s) | 2722 |
| NspI | RCATGY | 3 cut(s) | 1475, 2533, 3336 |
| NspV | TTCGAA | 1 cut(s) | 1955 |
| PaeI | GCATGC | 1 cut(s) | 2533 |
| PaeR7I | CTCGAG | 1 cut(s) | 2429 |
| PagI | TCATGA | 1 cut(s) | 658 |
| PceI | AGGCCT | 2 cut(s) | 2061, 2931 |
| PciI | ACATGT | 1 cut(s) | 3332 |
| PctI | GAATGC | 2 cut(s) | 621, 962 |
| PdmI | GAANNNNTTC | 6 cut(s) | 311, 395, 918, 1174, 1725, 3510 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 2032, 2942 |
| PfoI | TCCNGGA | 1 cut(s) | 1864 |
| PleI | GAGTC | 5 cut(s) | 113, 1005, 2198, 3104, 3639 |
| PmeI | GTTTAAAC | 1 cut(s) | 1890 |
| PpsI | GAGTC | 5 cut(s) | 113, 1005, 2198, 3104, 3639 |
| Ppu21I | YACGTR | 2 cut(s) | 1556, 2607 |
| PpuMI | RGGWCCY | 2 cut(s) | 1862, 3607 |
| PscI | ACATGT | 1 cut(s) | 3332 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2964 |
| PshBI | ATTAAT | 1 cut(s) | 1124 |
| PsiI | TTATAA | 1 cut(s) | 1686 |
| Psp124BI | GAGCTC | 1 cut(s) | 3423 |
| Psp5II | RGGWCCY | 2 cut(s) | 1862, 3607 |
| Psp6I | CCWGG | 4 cut(s) | 619, 1729, 1792, 1864 |
| PspFI | CCCAGC | 1 cut(s) | 3433 |
| PspGI | CCWGG | 4 cut(s) | 619, 1729, 1792, 1864 |
| PspN4I | GGNNCC | 2 cut(s) | 2366, 3048 |
| PspOMI | GGGCCC | 1 cut(s) | 2364 |
| PspPI | GGNCC | 7 cut(s) | 413, 1862, 2170, 2364, 2365, 3607, 3740 |
| PspPPI | RGGWCCY | 2 cut(s) | 1862, 3607 |
| PstI | CTGCAG | 1 cut(s) | 3374 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1865 |
| PsuI | RGATCY | 3 cut(s) | 100, 202, 2264 |
| PvuII | CAGCTG | 2 cut(s) | 112, 410 |
| RsaI | GTAC | 9 cut(s) | 471, 717, 1062, 2052, 2199, 2714, 2837, 3007, 3048 |
| RsaNI | GTAC | 9 cut(s) | 470, 716, 1061, 2051, 2198, 2713, 2836, 3006, 3047 |
| RseI | CAYNNNNRTG | 2 cut(s) | 576, 684 |
| SacI | GAGCTC | 1 cut(s) | 3423 |
| SalI | GTCGAC | 1 cut(s) | 155 |
| Sau96I | GGNCC | 7 cut(s) | 413, 1862, 2170, 2364, 2365, 3607, 3740 |
| ScaI | AGTACT | 3 cut(s) | 471, 2199, 2714 |
| SchI | GAGTC | 5 cut(s) | 113, 1006, 2199, 3104, 3640 |
| ScrFI | CCNGG | 5 cut(s) | 621, 1731, 1794, 1866, 2988 |
| SduI | GDGCHC | 4 cut(s) | 2368, 2473, 3041, 3423 |
| SfcI | CTRYAG | 2 cut(s) | 2412, 3370 |
| Sfr274I | CTCGAG | 1 cut(s) | 2429 |
| SfuI | TTCGAA | 1 cut(s) | 1955 |
| SinI | GGWCC | 2 cut(s) | 1862, 3607 |
| SlaI | CTCGAG | 1 cut(s) | 2429 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 576, 684 |
| SphI | GCATGC | 1 cut(s) | 2533 |
| SseBI | AGGCCT | 2 cut(s) | 2061, 2931 |
| SsiI | CCGC | 8 cut(s) | 1759, 2173, 2323, 2523, 2740, 3298, 3700, 3738 |
| SspI | AATATT | 1 cut(s) | 1364 |
| SstI | GAGCTC | 1 cut(s) | 3423 |
| StuI | AGGCCT | 2 cut(s) | 2061, 2931 |
| StyD4I | CCNGG | 5 cut(s) | 619, 1729, 1792, 1864, 2986 |
| StyI | CCWWGG | 2 cut(s) | 45, 1522 |
| TaaI | ACNGT | 8 cut(s) | 487, 1812, 2297, 2416, 2858, 3005, 3241, 3366 |
| TaiI | ACGT | 3 cut(s) | 1558, 2609, 2813 |
| TaqII | GACCGA | 1 cut(s) | 909 |
| TatI | WGTACW | 6 cut(s) | 469, 715, 2050, 2197, 2712, 2835 |
| TauI | GCSGC | 4 cut(s) | 1762, 2175, 2326, 3741 |
| TscAI | CASTG | 4 cut(s) | 2421, 2672, 2969, 3246 |
| TseFI | GTSAC | 9 cut(s) | 49, 116, 567, 877, 890, 2697, 2753, 2822, 3360 |
| Tsp45I | GTSAC | 9 cut(s) | 49, 116, 567, 877, 890, 2697, 2753, 2822, 3360 |
| TspGWI | ACGGA | 3 cut(s) | 3137, 3573, 3743 |
| TspRI | CASTG | 4 cut(s) | 2421, 2672, 2969, 3246 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 2032, 2942 |
| VpaK11BI | GGWCC | 2 cut(s) | 1862, 3607 |
| VspI | ATTAAT | 1 cut(s) | 1124 |
| XbaI | TCTAGA | 3 cut(s) | 2830, 3106, 3712 |
| XceI | RCATGY | 3 cut(s) | 1475, 2533, 3336 |
| XhoI | CTCGAG | 1 cut(s) | 2429 |
| XmiI | GTMKAC | 2 cut(s) | 156, 3337 |
| XmnI | GAANNNNTTC | 6 cut(s) | 311, 395, 918, 1174, 1725, 3510 |
| ZrmI | AGTACT | 3 cut(s) | 471, 2199, 2714 |