Rw3G010900

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Reverse (-)
10494688 .. 10499169
4482 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G010900.1

Sequence Viewer

Length: 3870 bp
ATGGCTGAATTTCTTACTTTTGCTGCCCAGGAAATGCTGATCAAAGTGGCTTCACTTGCTGCTCAACAGTTCAGTCTTGTATTGGGTTTTCATGGTGAACTAACGAAGATGAGTGAGTCGCTGAAAATGCTTGAAGCTGTGCTACGAGATGCTGAAAATCCGCGACAAGATCAGGGCGAGGCTGTGAAGCTCTGGTTGGAGAAGCTTGAAGACATAGCTCATCATGCCGATGACGTGCTGGATGACTATGGATATGAGCTTCTTCGACGTAAGGTGGAACTGCGAAACCAAATGAAGAAAAAGGTGCTAAACTTTTTTTCCCTCTCCAATCCCATCCTTTTTCGTCTTAAAATGGCACATAAAATTAAGAAGATCAACACATCTCTGGATGATCTGAGAAAAGATGCAAGTGGTTTGGGGTTTATTGCTAGGCGTCCCTTAGCGGCAACAAGCTTCTATGATGGAAGAATCTATAGGGAAACCTACTCTGACTTCAAAAAAGATGAAAACAATATCATTGGAAGGAAAGATGTTGTGGAAGATATAGTGAAAGCCTTGACCAACTCAAACAACAATCAGAAAAATGATCTTTCAGTTCTAGCCATCGTGGGTATGGGGGGACTTGGGAAGACCACTTTGGCTAAATCTGTATATCATGGTAAGATTGATCAACACTTTCAAGAAAAGATGTGGGTGTGTGTGTCTACCCCTTTTGAAGTCGACTCGATTTTAAGGAGGATCTTGGAGTGTCTTAAGCCTGAACATGCTGCAGTGCAAGCTATAGATGCAATATGTAGAATCCTCAAAAAGGAGTTGAAAGAGAAAAGGTATCTTCTTGTGCTTGATGATGTTTGGAACGAAGATGCTCAAAAATGGGAAGAATTGATCAGTTGTTTGGTAAACGTCAATGATACCCAAGGAAGTAGCATCCTTGTCACTACCCGTAGCGATAAAGTTGCAAAAATGGTGGAGACCCTTCCTAGGTGTGATTTAGAAAAACTATCAGATGATGAATGTTGGCTCATATTGAAAGACAGAGCAATTCCAGTTGGGAGTGCTCCTATAGTTGAAGATCAAGAGAAAATTGGAAGAGAGATTGCTAAAAAGTGTGGAGGTGTACCATTAGTAGCAAAGGTGTTGGGAAATATGATGCGCTCTAAAAAGTGTGATGAATGGCAATCAATTGTGGAAAGTGGTATATGGAATTTACCAGAGGAAGAAAATAGAATATTGGCGATCTTGAAATTGAGTTTTGATGAATTGAAATTTCCATCATTGAAACAATGTTTTGCATACTGCTCCATGTTCATCAAAGATTTTGAATTTGAAAAGGACGACTTGATCCAACATTGGATGGCTCAAGGATGGCTTCACCCTTCTCCTAACCAAGATAATCTAGAGATGGAGGATACAGGTAATGAATATTTTAATATTCTATTACAAAACTCATTTTTTCAAGATGTGAAAAGGGACTCCTTTGGTAATATAGCCTATTGTAAGATGCATGATCTTGTTCATGATCTTGCTGAACGTGTTTCAAAGTCGAAGTACTTGCGCTCATTATTTTCAAATGGAGTAGTCCTTGACAACAACTCACCCGGATTTAAAGCTTTACGTGTTTTAAATTTATACAAGGCAGACATTCAGGAGCTGCCAGATTCAATTGGAAAGTTGAAACACTTGAGGTATCTGAATGTCATGAAAACAAAAATAAGAGCTTTTCCAAAATCTTTGGGACAGCTTTATAACCTTGAGACATTTAAAATGCCTCATGTCCTTGAAGAGTTCCCAAAAGAAATTGCAAATTTGATCAACTTGAGACATGTTTATTTTGATAAACATGTAAAAGTTCCAGCTGGGGTGTTAGGAAGATTGACTAATCTCCGATCATTACCTTTTGTAAAGATGGGTAAGGAGACTGGTACTCATATCGGGGAATTAGGTGGCTTAAACCATCTGAAAGGTACCGTATCTTTTTATAATCTGGAACATGTAAGAGATAAAGAAGAAGCAGAGAAGGCATATTTAGTGGAGAAGAAACATCTACGCAAGTTATTCTTTAGATGGACGCCTAGTAGACCAAGCAACAGTGCTGACAGTGACGAAGTTGTACTTGAAGTCCTGCGGCCACATTCTAATCTGGAATTTTTGGAGATTCATGGCTTCATGGGTGTGAAATTGCCATCATGGATACTATCCACCAACTTAAAAGAGATTGAATTAGAGGGATGCAACAAATGCGAAGAAGTCCCAGCACTTGGCCAGCTGCCCAATCTTGTCCATGTGAAGATGAAAACCATGGAGAATCTGAAGTGTTTGGGATATGAGTTTTATGGTTATGATCACGAATCTGATGATACAAAGGTTTTGTTTCGTGCATTGAAAACATTATGTATTCAGGAGGTGAGAAGCCTAATTGAATGGATGGAAGTGCCAACAGGAAGAGTGACGGTGTTTCCTTGCCTTGAGGAGTTGGCCCTGAACGGTTGCGACCAATTGGGAAGTGCTCCCAGTCATTTTCCATGTCTGAAAAAGTTGGTGATTAAAGGCATGAATAGCGGAGGCAGTCCAATAGCAAGTATTCTAAGCAATAAACTGACCACTCTCACTTCTCTCAAGATTCGCAATGTGAGGGGACTTGCCTGTCTGCCAGGAAGGTTGTTAGAAAACAACCAGAATCTTTCATGTATGCTGATAGATGATTGTGAGGAGTTTACTTGTATTGCTCCTCCCCAATCACAAGGGTTTGAGTACTGCTGCGCGTCTCTTCAGGAACTGACAATTAGGGGGTGTCCTAAGCTGAGGTGTTTACCTGATTATGGGCTCTCTCTTGAGAAGTTGGAGATAATAAATTGCTCCAGTCTAGAGTCCATCCCTATCATCCCTGAGCACGGTGGTCTCCCATCTCTACGCGAATTGCGGATCCTAGCATGTCCTGAGTTATCCAGTCTACCTGATGGGCTACAATACTGCACATCTCTTCAAATTTTGCTAATACGGAGCTGCCCAAAGATAACGTCCATTCCAATTCCATCTGAGGGCCTCCCATCCCTTGATTGGCTGTCTCTTTCGGAGTGTCCTGAATTAGCAAGCCTGCCGAGTGGACTAGGCTGCTGCACCTCTCTTGTTACTTTGGTGGTAGCAACGTGCCCTAAGCTAACATCCATTCCAATTTGCGGCTTCACATCCCTCCGACTCTTGTATGTAAGTAATCTAGAGTCTCTTCCAGGTTTACACGGCGGCTTCACATCCCTCCGTCGATTGGGAATCTATGGATGTCAAGGTACACAAATTGATCTGCAATTTTGTGCCTCTCTTGAGGGGTTGGGCATATCAGACTGTCCAAATCTAGAGACTGTTCGAAGTTTAGACAAGCTCACATCCCTCCGTGAGTTGAGGATTACTGATTGTTCCCGATTGACATGTCTACCCAGTGGGTTAGCAATGGCATCCCCGCACGTATTCACCCGTCTCAAGTACTTGACACTTGGTCCGTTTTGGAATGAGCTGGATTATGATTTTCAGGTTCTACCACAACTTGAAGAATTAAGTATCTACGGGTGGCCGAAGCTCAAGTCTCTGCCTGAACAAACTCAACACTTGACGTCTTTGACCACATTGTGGATAAGTGACTTTGAGGGATTGGAGGCTGTTCCAGAATGGTTGGGAAACCTTGCATCTCTTCAATTCTTAAGAATTAAGAATTGCAAGAATCTGGTGTCTCTACCTTCCGTCCAAGCTATGCACCGCCTCACCAAATTAGATCGGATACGGATCGACAATTGTCCCCTTTTGAGCGAAAGATGCAGAGAGGAGAGCGGCCTTGAGTGGCATAAGATTTCTCATATTCCAGACATCAGTGTTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

1289

Amino Acids

145.66

Weight (kDa)

6.29

Isoelectric Point (pI)

47.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 12 - 97 1.6e-20 Rx N-terminal domain
nSTAND1 PF20703 167 - 386 1.1e-06 Novel STAND NTPase 1
NB-ARC PF00931 176 - 348 1.7e-34 NB-ARC domain
NACHT PF05729 199 - 330 6e-06 NACHT domain
WHD_DRP PF23559 435 - 509 9.9e-25 Disease resistance protein Winged helix domain
LRR_14 PF23598 524 - 800 1.2e-27 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 644 - 767 2.2e-33 R13L1/DRL21 LRRs
LRR_14 PF23598 1120 - 1268 5e-09 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 1201 - 1259 2.5e-06 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000029)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13530 FvH4_4g18270 FvH4_6g12200 FvH4_6g12460 FvH4_6g12461 FvH4_6g13450 FvH4_6g15090 FvH4_6g15220 FvH4_6g15230 FvH4_6g15250 FvH4_6g15251 FvH4_6g15340 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47980 FvH4_6g47980 FvH4_6g47980 FvH4_6g48170 FvH4_6g48310 FvH4_6g48310 FvH4_6g48850 FvH4_6g48881 FvH4_7g11830
malus_domestica MD02G1059900.v1.1 MD02G1069600.v1.1 MD02G1069700.v1.1 MD02G1070100.v1.1 MD02G1070200.v1.1 MD02G1070300.v1.1 MD02G1070800.v1.1 MD02G1070900.v1.1 MD02G1071200.v1.1 MD02G1071400.v1.1 MD02G1071900.v1.1 MD02G1075200.v1.1 MD03G1048000.v1.1 MD03G1049100.v1.1 MD03G1049200.v1.1 MD03G1052500.v1.1 MD03G1054100.v1.1 MD03G1054300.v1.1 MD03G1054400.v1.1 MD04G1113400.v1.1 MD04G1211100.v1.1 MD04G1211200.v1.1 MD05G1174900.v1.1 MD05G1175000.v1.1 MD05G1175900.v1.1 MD05G1243400.v1.1 MD07G1031500.v1.1 MD07G1031600.v1.1 MD07G1032500.v1.1 MD11G1046800.v1.1 MD11G1046900.v1.1 MD11G1047000.v1.1 MD11G1050400.v1.1 MD11G1050600.v1.1 MD11G1050800.v1.1 MD11G1051100.v1.1 MD11G1051600.v1.1 MD11G1051700.v1.1 MD11G1054600.v1.1 MD11G1055600.v1.1 MD11G1055700.v1.1 MD11G1055800.v1.1 MD11G1056000.v1.1 MD12G1126600.v1.1 MD12G1126700.v1.1 MD12G1126800.v1.1 MD12G1127300.v1.1 MD12G1127600.v1.1 MD12G1127900.v1.1 MD12G1128100.v1.1 MD12G1128300.v1.1 MD15G1261500.v1.1
prunus_persica Prupe.1G010700_v2.0.a1 Prupe.1G010800_v2.0.a1 Prupe.1G011000_v2.0.a1 Prupe.1G159600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163700_v2.0.a1 Prupe.1G163700_v2.0.a1 Prupe.1G163800_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G235500_v2.0.a1 Prupe.2G067400_v2.0.a1 Prupe.2G067500_v2.0.a1 Prupe.2G111700_v2.0.a1 Prupe.2G111800_v2.0.a1 Prupe.3G012000_v2.0.a1 Prupe.6G243400_v2.0.a1 Prupe.6G243500_v2.0.a1 Prupe.6G243600_v2.0.a1 Prupe.6G243700_v2.0.a1 Prupe.6G243800_v2.0.a1 Prupe.6G243900_v2.0.a1
pyrus_communis pycom02g04860 pycom02g04880 pycom02g04890 pycom02g05510 pycom02g05520 pycom02g05600 pycom02g05930 pycom02g06000 pycom02g06010 pycom03g03800 pycom03g03860 pycom03g03880 pycom03g03890 pycom03g03910 pycom03g03920 pycom03g04200 pycom03g04290 pycom03g04300 pycom03g04310 pycom03g04320 pycom03g09260 pycom04g10150 pycom04g10160 pycom04g10170 pycom05g16180 pycom05g16190 pycom05g16240 pycom05g21980 pycom05g21990 pycom07g02280 pycom11g03800 pycom11g03810 pycom11g04080 pycom11g04140 pycom11g04150 pycom11g04160 pycom11g04570 pycom11g04580 pycom11g04590 pycom11g04610 pycom12g12470 pycom12g12490 pycom13g22050
rosa_chinensis RchiOBHm_Chr1g0317761 RchiOBHm_Chr1g0317821 RchiOBHm_Chr1g0317831 RchiOBHm_Chr1g0317871 RchiOBHm_Chr1g0350501 RchiOBHm_Chr2g0107631 RchiOBHm_Chr3g0452091 RchiOBHm_Chr3g0464001 RchiOBHm_Chr3g0464281 RchiOBHm_Chr3g0466331 RchiOBHm_Chr3g0467341 RchiOBHm_Chr3g0467381 RchiOBHm_Chr3g0467731 RchiOBHm_Chr3g0468291 RchiOBHm_Chr3g0468321 RchiOBHm_Chr3g0468341 RchiOBHm_Chr3g0468391 RchiOBHm_Chr3g0468411 RchiOBHm_Chr3g0468571 RchiOBHm_Chr3g0468591 RchiOBHm_Chr3g0490721 RchiOBHm_Chr3g0490751 RchiOBHm_Chr3g0490761 RchiOBHm_Chr3g0490771 RchiOBHm_Chr3g0490951 RchiOBHm_Chr3g0491001 RchiOBHm_Chr3g0491011 RchiOBHm_Chr4g0412461 RchiOBHm_Chr4g0414161 RchiOBHm_Chr4g0414181 RchiOBHm_Chr4g0414191 RchiOBHm_Chr4g0414281 RchiOBHm_Chr4g0414441 RchiOBHm_Chr4g0414521 RchiOBHm_Chr4g0414531 RchiOBHm_Chr4g0417011 RchiOBHm_Chr4g0417021 RchiOBHm_Chr4g0417041 RchiOBHm_Chr4g0417071 RchiOBHm_Chr4g0417101 RchiOBHm_Chr4g0417531 RchiOBHm_Chr4g0417641 RchiOBHm_Chr4g0417651 RchiOBHm_Chr4g0417701 RchiOBHm_Chr4g0417731 RchiOBHm_Chr4g0417741 RchiOBHm_Chr4g0417781 RchiOBHm_Chr4g0418751 RchiOBHm_Chr4g0418791 RchiOBHm_Chr4g0418861 RchiOBHm_Chr4g0418881 RchiOBHm_Chr4g0418901 RchiOBHm_Chr4g0422451 RchiOBHm_Chr4g0422461 RchiOBHm_Chr4g0422471 RchiOBHm_Chr4g0422541 RchiOBHm_Chr4g0422561 RchiOBHm_Chr4g0422591 RchiOBHm_Chr4g0422651 RchiOBHm_Chr4g0422661 RchiOBHm_Chr5g0003251 RchiOBHm_Chr5g0003261 RchiOBHm_Chr5g0055871 RchiOBHm_Chr7g0204701 RchiOBHm_Chr7g0204741
rosa_laevigata RLG00000007607 RLG00000007932 RLG00000017606 RLG00000024418 RLG00000025629 RLG00000030586
rosa_multiflora Rmu_co7959167.1_g000001 Rmu_co8021330.1_g000001 Rmu_co8132128.1_g000001 Rmu_co8224744.1_g000001 Rmu_co8281865.1_g000001 Rmu_co8298487.1_g000001 Rmu_co8319035.1_g000001 Rmu_co8380035.1_g000001 Rmu_co8385371.1_g000001 Rmu_co8398173.1_g000001 Rmu_co8423363.1_g000001 Rmu_co8438275.1_g000001 Rmu_co8474729.1_g000001 Rmu_sc0000057.1_g000008 Rmu_sc0000350.1_g000023 Rmu_sc0000480.1_g000005 Rmu_sc0000654.1_g000021 Rmu_sc0000654.1_g000029 Rmu_sc0000654.1_g000032 Rmu_sc0000654.1_g000041 Rmu_sc0000654.1_g000045 Rmu_sc0000772.1_g000002 Rmu_sc0000772.1_g000041 Rmu_sc0000808.1_g000040 Rmu_sc0000830.1_g000062 Rmu_sc0000830.1_g000065 Rmu_sc0000830.1_g000072 Rmu_sc0000830.1_g000073 Rmu_sc0000935.1_g000020 Rmu_sc0000935.1_g000024 Rmu_sc0000935.1_g000026 Rmu_sc0000935.1_g000027 Rmu_sc0000935.1_g000031 Rmu_sc0000935.1_g000033 Rmu_sc0000962.1_g000033 Rmu_sc0000962.1_g000036 Rmu_sc0000962.1_g000063 Rmu_sc0000962.1_g000064 Rmu_sc0000962.1_g000065 Rmu_sc0001029.1_g000007 Rmu_sc0001063.1_g000014 Rmu_sc0001149.1_g000010 Rmu_sc0001149.1_g000011 Rmu_sc0001358.1_g000009 Rmu_sc0001448.1_g000003 Rmu_sc0001448.1_g000004 Rmu_sc0001729.1_g000005 Rmu_sc0001729.1_g000007 Rmu_sc0001729.1_g000020 Rmu_sc0001729.1_g000023 Rmu_sc0001793.1_g000015 Rmu_sc0002494.1_g000018 Rmu_sc0002494.1_g000019 Rmu_sc0002604.1_g000022 Rmu_sc0002922.1_g000011 Rmu_sc0003008.1_g000009 Rmu_sc0003221.1_g000061 Rmu_sc0003221.1_g000062 Rmu_sc0003459.1_g000014 Rmu_sc0003480.1_g000015 Rmu_sc0003541.1_g000016 Rmu_sc0003541.1_g000020 Rmu_sc0004035.1_g000001 Rmu_sc0004035.1_g000005 Rmu_sc0004035.1_g000011 Rmu_sc0004142.1_g000004 Rmu_sc0004142.1_g000010 Rmu_sc0004353.1_g000008 Rmu_sc0004616.1_g000009 Rmu_sc0004616.1_g000010 Rmu_sc0005231.1_g000004 Rmu_sc0006380.1_g000025 Rmu_sc0006492.1_g000010 Rmu_sc0006895.1_g000001 Rmu_sc0006895.1_g000002 Rmu_sc0006895.1_g000005 Rmu_sc0007034.1_g000004 Rmu_sc0007104.1_g000006 Rmu_sc0008990.1_g000003 Rmu_sc0008990.1_g000004 Rmu_sc0009106.1_g000003 Rmu_sc0009516.1_g000002 Rmu_sc0009516.1_g000003 Rmu_sc0009516.1_g000004 Rmu_sc0009516.1_g000005 Rmu_sc0009645.1_g000001 Rmu_sc0010274.1_g000001 Rmu_sc0010274.1_g000002 Rmu_sc0010419.1_g000003 Rmu_sc0010917.1_g000017 Rmu_sc0011213.1_g000001 Rmu_sc0011228.1_g000007 Rmu_sc0011538.1_g000011 Rmu_sc0011538.1_g000014 Rmu_sc0011538.1_g000015 Rmu_sc0012211.1_g000006 Rmu_sc0012351.1_g000003 Rmu_sc0012351.1_g000005 Rmu_sc0012915.1_g000002 Rmu_sc0013088.1_g000001 Rmu_sc0013459.1_g000001 Rmu_sc0013765.1_g000004 Rmu_sc0013765.1_g000005 Rmu_sc0014003.1_g000012 Rmu_sc0014003.1_g000014 Rmu_sc0014698.1_g000001 Rmu_sc0015740.1_g000001 Rmu_sc0016429.1_g000003 Rmu_sc0018885.1_g000001 Rmu_sc0020345.1_g000001 Rmu_sc0027791.1_g000001 Rmu_sc0037325.1_g000001 Rmu_ssc0000010.1_g000024 Rmu_ssc0000010.1_g000025 Rmu_ssc0000083.1_g000021 Rmu_ssc0000340.1_g000002 Rmu_ssc0000386.1_g000002 Rmu_ssc0000386.1_g000024 Rmu_ssc0000386.1_g000025 Rmu_ssc0000386.1_g000034 Rmu_ssc0000386.1_g000037 Rmu_ssc0000477.1_g000001
rosa_roxburghii Rroxscaffold_161G00448010 Rroxscaffold_164G00436080 Rroxscaffold_1G00024500 Rroxscaffold_2G00124290 Rroxscaffold_3G00222940 Rroxscaffold_3G00227440 Rroxscaffold_4G00304810 Rroxscaffold_4G00330180 Rroxscaffold_4G00330200 Rroxscaffold_5G00356620 Rroxscaffold_5G00358170 Rroxscaffold_5G00360880 Rroxscaffold_5G00361220 Rroxscaffold_5G00361950 Rroxscaffold_5G00361960 Rroxscaffold_5G00361990 Rroxscaffold_5G00362370 Rroxscaffold_5G00364540 Rroxscaffold_5G00364550 Rroxscaffold_5G00364580 Rroxscaffold_5G00364600 Rroxscaffold_6G00393290 Rroxscaffold_6G00412680 Rroxscaffold_6G00412790 Rroxscaffold_6G00413470 Rroxscaffold_6G00413720 Rroxscaffold_6G00416070 Rroxscaffold_7G00205400
rosa_rugosa Rorug01G0017300 Rorug01G0017400 Rorug01G0018000 Rorug01G0018100 Rorug01G0211500 Rorug02G0638200 Rorug03G0070000 Rorug03G0071200 Rorug03G0081000 Rorug03G0086500 Rorug03G0089300 Rorug03G0095300 Rorug03G0096000 Rorug03G0096000 Rorug04G0055000 Rorug04G0078300 Rorug04G0104100.1 Rorug04G0113800 Rorug04G0126700 Rorug04G0128000 Rorug04G0145900 Rorug04G0148700 Rorug04G0149100 Rorug04G0149100 Rorug04G0149200 Rorug04G0149300 Rorug04G0154900 Rorug04G0180400 Rorug04G0180500 Rorug04G0180700 Rorug04G0180800 Rorug04G0401500 Rorug04G0402100 Rorug05G0288600 Rorug05G0334100 Rorug07G0176400
rosa_samantha Rh1DG043200 Rh1DG043500 Rh1DG043900 Rh1DG222800 Rh3CG039900 Rh3CG156200 Rh3CG328500 Rh3CG328800 Rh3DG165000 Rh4AG208400 Rh4BG205600 Rh4BG213900 Rh4BG243900 Rh4CG198800 Rh4DG168600 Rh4DG180100 Rh4DG180300 Rh4DG180600 Rh4DG181200 Rh4DG181600 Rh4DG181700 Rh4DG183700 Rh4DG184000 Rh4DG184400 Rh4DG184700 Rh4DG206100 Rh4DG206200 Rh4DG206300 Rh4DG215600 Rh4DG238700 Rh4DG238900 Rh5DG390300
rosa_wichuraiana Rw0G005050 Rw0G009260 Rw0G009280 Rw0G015600 Rw0G023570 Rw1G002140 Rw1G002170 Rw1G002210 Rw1G002240 Rw1G019500 Rw2G015490 Rw3G003020 Rw3G010900 Rw3G012030 Rw3G012790 Rw3G013050 Rw3G013540 Rw3G013640 Rw3G013650 Rw3G026050 Rw3G026070 Rw4G015740 Rw4G015790 Rw4G015910 Rw4G015930 Rw4G015950 Rw4G017900 Rw4G017930 Rw4G018440 Rw4G018450 Rw4G018530 Rw4G020720 Rw4G020760 Rw5G019250 Rw5G034370 Rw7G018700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1746, 1980
AasI GACNNNNNNGTC 1 cut(s) 2643
AatII GACGTC 1 cut(s) 3608
Acc65I GGTACC 1 cut(s) 1964
AccB1I GGYRCC 1 cut(s) 1964
AccB7I CCANNNNNTGG 2 cut(s) 2258, 3621
AccBSI CCGCTC 1 cut(s) 3819
AccI GTMKAC 5 cut(s) 704, 720, 2077, 2950, 3427
AccII CGCG 3 cut(s) 163, 2762, 2913
AclWI GGATC 5 cut(s) 746, 1336, 2917, 2930, 3782
AcoI YGGCCR 3 cut(s) 2126, 2260, 3563
AcsI RAATTY 8 cut(s) 8, 1204, 1265, 1322, 1624, 1804, 2144, 2985
AcuI CTGAAG 2 cut(s) 2330, 2753
AcyI GRCGYC 3 cut(s) 433, 2069, 3605
AdeI CACNNNGTG 1 cut(s) 3621
AfaI GTAC 8 cut(s) 1119, 1550, 1924, 1966, 2112, 2753, 3286, 3479
AflII CTTAAG 2 cut(s) 752, 3691
AflIII ACRYGT 6 cut(s) 1531, 1615, 1822, 1840, 1990, 3422
AhdI GACNNNNNGTC 1 cut(s) 3489
AjiI CACGTC 1 cut(s) 235
AjnI CCWGG 3 cut(s) 27, 2650, 3226
AjuI GAANNNNNNNTTGG 4 cut(s) 179, 211, 620, 652
Alw21I GWGCWC 3 cut(s) 1060, 2509, 2892
AlwI GGATC 5 cut(s) 746, 1336, 2917, 2930, 3782
AlwNI CAGNNNCTG 2 cut(s) 1651, 2776
AoxI GGCC 6 cut(s) 2126, 2260, 2475, 3040, 3563, 3820
ApeKI GCWGC 9 cut(s) 23, 59, 767, 1651, 2266, 2757, 3003, 3111, 3114
ApoI RAATTY 8 cut(s) 8, 1204, 1265, 1322, 1624, 1804, 2144, 2985
ArsI GACNNNNNNTTYG 4 cut(s) 3002, 3034, 3560, 3592
Asp718I GGTACC 1 cut(s) 1964
AspA2I CCTAGG 1 cut(s) 980
AspLEI GCGC 3 cut(s) 1155, 1557, 2762
AspS9I GGNCC 3 cut(s) 2476, 3040, 3491
AsuC2I CCSGG 1 cut(s) 1599
AsuHPI GGTGA 7 cut(s) 107, 1364, 1587, 2416, 2551, 3457, 3745
AsuII TTCGAA 1 cut(s) 3361
AvaII GGWCC 1 cut(s) 3491
AvrII CCTAGG 1 cut(s) 980
BaeGI GKGCMC 1 cut(s) 3152
BaeI ACNNNNGTAYC 2 cut(s) 2349, 2382
BalI TGGCCA 1 cut(s) 2262
BamHI GGATCC 1 cut(s) 2922
BanI GGYRCC 1 cut(s) 1964
BanII GRGCYC 1 cut(s) 2826
BarI GAAGNNNNNNTAC 2 cut(s) 126, 158
BbsI GAAGAC 2 cut(s) 216, 635
Bbv12I GWGCWC 3 cut(s) 1060, 2509, 2892
BbvCI CCTCAGC 1 cut(s) 2801
BbvI GCAGC 9 cut(s) 10, 46, 754, 1638, 2253, 2744, 2990, 3098, 3101
BceAI ACGGC 1 cut(s) 3253
BcgI CGANNNNNNTGC 4 cut(s) 938, 972, 1534, 1568
BciT130I CCWGG 3 cut(s) 29, 2652, 3228
BciVI GTATCC 3 cut(s) 1402, 2184, 3762
BclI TGATCA 5 cut(s) 39, 667, 885, 1809, 2341
BcnI CCSGG 1 cut(s) 1599
BfmI CTRYAG 4 cut(s) 472, 768, 780, 1062
BfrI CTTAAG 2 cut(s) 752, 3691
BfuI GTATCC 3 cut(s) 1402, 2184, 3762
BlnI CCTAGG 1 cut(s) 980
BmcAI AGTACT 3 cut(s) 1550, 2753, 3479
Bme1390I CCNGG 4 cut(s) 29, 1599, 2652, 3228
Bme18I GGWCC 1 cut(s) 3491
BmeRI GACNNNNNGTC 1 cut(s) 3489
BmgBI CACGTC 1 cut(s) 235
BmgT120I GGNCC 3 cut(s) 2476, 3040, 3491
BmiI GGNNCC 2 cut(s) 1966, 2924
BmrFI CCNGG 4 cut(s) 29, 1599, 2652, 3228
BmrI ACTGGG 2 cut(s) 2505, 3426
BmuI ACTGGG 2 cut(s) 2505, 3426
BoxI GACNNNNGTC 1 cut(s) 3783
BpiI GAAGAC 2 cut(s) 216, 635
BpmI CTGGAG 1 cut(s) 2842
Bpu10I CCTNAGC 5 cut(s) 439, 2796, 2801, 2886, 3153
Bpu14I TTCGAA 1 cut(s) 3361
BpuMI CCSGG 1 cut(s) 1599
BsaAI YACGTR 2 cut(s) 1616, 3460
BsaBI GATNNNNATC 1 cut(s) 3773
BsaHI GRCGYC 3 cut(s) 433, 2069, 3605
BsaI GGTCTC 2 cut(s) 965, 2903
BsaJI CCNNGG 4 cut(s) 27, 916, 980, 2298
Bse1I ACTGG 6 cut(s) 1046, 1924, 2511, 2859, 2946, 3432
Bse3DI GCAATG 2 cut(s) 2632, 3450
Bse8I GATNNNNATC 1 cut(s) 3773
BseBI CCWGG 3 cut(s) 29, 2652, 3228
BseDI CCNNGG 4 cut(s) 27, 916, 980, 2298
BseJI GATNNNNATC 1 cut(s) 3773
BseMI GCAATG 2 cut(s) 2632, 3450
BseMII CTCAG 5 cut(s) 386, 2792, 2877, 2928, 3027
BseNI ACTGG 6 cut(s) 1046, 1924, 2511, 2859, 2946, 3432
BseRI GAGGAG 4 cut(s) 2483, 2718, 2723, 3827
BseSI GKGCMC 1 cut(s) 3152
BseXI GCAGC 9 cut(s) 10, 46, 754, 1638, 2253, 2744, 2990, 3098, 3101
BseYI CCCAGC 2 cut(s) 1856, 2251
BsgI GTGCAG 2 cut(s) 2956, 3100
Bsh1236I CGCG 3 cut(s) 163, 2762, 2913
BshFI GGCC 6 cut(s) 2128, 2262, 2477, 3042, 3565, 3822
BshNI GGYRCC 1 cut(s) 1964
BsiHKAI GWGCWC 3 cut(s) 1060, 2509, 2892
BsiSI CCGG 1 cut(s) 1599
BslFI GGGAC 7 cut(s) 420, 633, 1484, 1749, 2234, 2649, 3771
BsmBI CGTCTC 2 cut(s) 2769, 3476
BsmFI GGGAC 7 cut(s) 420, 633, 1484, 1749, 2234, 2649, 3771
BsnI GGCC 6 cut(s) 2128, 2262, 2477, 3042, 3565, 3822
Bso31I GGTCTC 2 cut(s) 965, 2903
Bsp119I TTCGAA 1 cut(s) 3361
Bsp1286I GDGCHC 5 cut(s) 1060, 2509, 2826, 2892, 3152
Bsp19I CCATGG 1 cut(s) 2298
BspANI GGCC 6 cut(s) 2128, 2262, 2477, 3042, 3565, 3822
BspCNI CTCAG 5 cut(s) 387, 2793, 2878, 2929, 3028
BspFNI CGCG 3 cut(s) 163, 2762, 2913
BspHI TCATGA 2 cut(s) 1516, 1698
BspLI GGNNCC 2 cut(s) 1966, 2924
BspMAI CTGCAG 1 cut(s) 772
BspPI GGATC 5 cut(s) 746, 1336, 2917, 2930, 3782
BspT104I TTCGAA 1 cut(s) 3361
BspT107I GGYRCC 1 cut(s) 1964
BspTI CTTAAG 2 cut(s) 752, 3691
BspTNI GGTCTC 2 cut(s) 965, 2903
BsrBI CCGCTC 1 cut(s) 3819
BsrDI GCAATG 2 cut(s) 2632, 3450
BsrI ACTGG 6 cut(s) 1046, 1924, 2511, 2859, 2946, 3432
BssECI CCNNGG 4 cut(s) 27, 916, 980, 2298
BssNI GRCGYC 3 cut(s) 433, 2069, 3605
BssT1I CCWWGG 3 cut(s) 916, 980, 2298
Bst2UI CCWGG 3 cut(s) 29, 2652, 3228
Bst4CI ACNGT 9 cut(s) 69, 1969, 2090, 2099, 2452, 2486, 2894, 3341, 3358
Bst6I CTCTTC 7 cut(s) 1084, 1776, 2437, 2772, 2985, 3228, 3687
BstACI GRCGYC 3 cut(s) 433, 2069, 3605
BstAFI CTTAAG 2 cut(s) 752, 3691
BstAPI GCANNNNNTGC 1 cut(s) 2238
BstBAI YACGTR 2 cut(s) 1616, 3460
BstBI TTCGAA 1 cut(s) 3361
BstC8I GCNNGC 4 cut(s) 777, 2264, 3091, 3095
BstDEI CTNAG 9 cut(s) 395, 439, 2585, 2796, 2801, 2886, 2937, 3036, 3153
BstDSI CCRYGG 1 cut(s) 2298
BstENI CCTNNNNNAGG 1 cut(s) 806
BstFNI CGCG 3 cut(s) 163, 2762, 2913
BstHHI GCGC 3 cut(s) 1155, 1557, 2762
BstMWI GCNNNNNNNGC 9 cut(s) 56, 127, 224, 776, 785, 2018, 2238, 2556, 3804
BstNI CCWGG 3 cut(s) 29, 2652, 3228
BstNSI RCATGY 6 cut(s) 767, 1826, 1844, 1994, 2934, 3426
BstPAI GACNNNNGTC 1 cut(s) 3783
BstSCI CCNGG 4 cut(s) 27, 1597, 2650, 3226
BstSFI CTRYAG 4 cut(s) 472, 768, 780, 1062
BstSLI GKGCMC 1 cut(s) 3152
BstUI CGCG 3 cut(s) 163, 2762, 2913
BstV1I GCAGC 9 cut(s) 10, 46, 754, 1638, 2253, 2744, 2990, 3098, 3101
BstV2I GAAGAC 2 cut(s) 216, 635
BstX2I RGATCY 2 cut(s) 738, 2922
BstYI RGATCY 2 cut(s) 738, 2922
BsuI GTATCC 3 cut(s) 1402, 2184, 3762
BsuRI GGCC 6 cut(s) 2128, 2262, 2477, 3042, 3565, 3822
BtgI CCRYGG 1 cut(s) 2298
BtrI CACGTC 1 cut(s) 235
BtsI GCAGTG 1 cut(s) 777
BtsIMutI CAGTG 5 cut(s) 777, 2095, 2104, 3439, 3865
Cac8I GCNNGC 4 cut(s) 777, 2264, 3091, 3095
CaiI CAGNNNCTG 2 cut(s) 1651, 2776
CciI TCATGA 2 cut(s) 1516, 1698
CfoI GCGC 3 cut(s) 1155, 1557, 2762
Cfr13I GGNCC 3 cut(s) 2476, 3040, 3491
CseI GACGC 3 cut(s) 422, 2077, 2751
Csp6I GTAC 8 cut(s) 1118, 1549, 1923, 1965, 2111, 2752, 3285, 3478
CspCI CAANNNNNGTGG 2 cut(s) 948, 983
CviQI GTAC 8 cut(s) 1118, 1549, 1923, 1965, 2111, 2752, 3285, 3478
DdeI CTNAG 9 cut(s) 395, 439, 2585, 2796, 2801, 2886, 2937, 3036, 3153
DraI TTTAAA 3 cut(s) 1606, 1623, 1762
DraIII CACNNNGTG 1 cut(s) 3621
DrdI GACNNNNNNGTC 1 cut(s) 2643
DriI GACNNNNNGTC 1 cut(s) 3489
DseDI GACNNNNNNGTC 1 cut(s) 2643
EaeI YGGCCR 3 cut(s) 2126, 2260, 3563
Eam1104I CTCTTC 7 cut(s) 1084, 1776, 2437, 2772, 2985, 3228, 3687
Eam1105I GACNNNNNGTC 1 cut(s) 3489
EarI CTCTTC 7 cut(s) 1084, 1776, 2437, 2772, 2985, 3228, 3687
Eco130I CCWWGG 3 cut(s) 916, 980, 2298
Eco24I GRGCYC 1 cut(s) 2826
Eco31I GGTCTC 2 cut(s) 965, 2903
Eco47I GGWCC 1 cut(s) 3491
Eco57I CTGAAG 2 cut(s) 2330, 2753
EcoNI CCTNNNNNAGG 1 cut(s) 806
EcoO109I RGGNCCY 1 cut(s) 3040
EcoRII CCWGG 3 cut(s) 27, 2650, 3226
EcoT14I CCWWGG 3 cut(s) 916, 980, 2298
EcoT22I ATGCAT 1 cut(s) 1506
EcoT38I GRGCYC 1 cut(s) 2826
ErhI CCWWGG 3 cut(s) 916, 980, 2298
Esp3I CGTCTC 2 cut(s) 2769, 3476
FalI AAGNNNNNCTT 8 cut(s) 1322, 1354, 1353, 1385, 2042, 2074, 2097, 2129
FaqI GGGAC 7 cut(s) 420, 633, 1484, 1749, 2234, 2649, 3771
FauI CCCGC 1 cut(s) 3462
FbaI TGATCA 5 cut(s) 39, 667, 885, 1809, 2341
FblI GTMKAC 5 cut(s) 704, 720, 2077, 2950, 3427
FriOI GRGCYC 1 cut(s) 2826
GlaI GCGC 3 cut(s) 1154, 1556, 2761
GsaI CCCAGC 2 cut(s) 1860, 2255
GsuI CTGGAG 1 cut(s) 2842
HaeIII GGCC 6 cut(s) 2128, 2262, 2477, 3042, 3565, 3822
HapII CCGG 1 cut(s) 1599
HgaI GACGC 3 cut(s) 422, 2077, 2751
HhaI GCGC 3 cut(s) 1155, 1557, 2762
Hin1I GRCGYC 3 cut(s) 433, 2069, 3605
Hin6I GCGC 3 cut(s) 1153, 1555, 2760
HinP1I GCGC 3 cut(s) 1153, 1555, 2760
HincII GTYRAC 1 cut(s) 721
HindII GTYRAC 1 cut(s) 721
HindIII AAGCTT 3 cut(s) 203, 451, 1608
HpaII CCGG 1 cut(s) 1599
HphI GGTGA 7 cut(s) 107, 1364, 1587, 2416, 2551, 3457, 3745
Hpy99I CGWCG 2 cut(s) 270, 3261
HpyAV CCTTC 6 cut(s) 516, 986, 1386, 2011, 2649, 3738
HpyCH4III ACNGT 9 cut(s) 69, 1969, 2090, 2099, 2452, 2486, 2894, 3341, 3358
HpyCH4IV ACGT 9 cut(s) 234, 268, 903, 1531, 1615, 3017, 3146, 3459, 3605
HpyF10VI GCNNNNNNNGC 9 cut(s) 56, 127, 224, 776, 785, 2018, 2238, 2556, 3804
HpyF3I CTNAG 9 cut(s) 395, 439, 2585, 2796, 2801, 2886, 2937, 3036, 3153
HpySE526I ACGT 9 cut(s) 234, 268, 903, 1531, 1615, 3017, 3146, 3459, 3605
Hsp92I GRCGYC 3 cut(s) 433, 2069, 3605
HspAI GCGC 3 cut(s) 1153, 1555, 2760
KpnI GGTACC 1 cut(s) 1968
Ksp22I TGATCA 5 cut(s) 39, 667, 885, 1809, 2341
LmnI GCTCC 7 cut(s) 1063, 1304, 1648, 2512, 2731, 2861, 3000
Lsp1109I GCAGC 9 cut(s) 10, 46, 754, 1638, 2253, 2744, 2990, 3098, 3101
MaeII ACGT 9 cut(s) 234, 268, 903, 1531, 1615, 3017, 3146, 3459, 3605
MaeIII GTNAC 5 cut(s) 934, 2099, 2446, 3127, 3629
MbiI CCGCTC 1 cut(s) 3819
MfeI CAATTG 4 cut(s) 1182, 1662, 2495, 3781
MflI RGATCY 2 cut(s) 738, 2922
MhlI GDGCHC 5 cut(s) 1060, 2509, 2826, 2892, 3152
MlsI TGGCCA 1 cut(s) 2262
MluNI TGGCCA 1 cut(s) 2262
MlyI GAGTC 6 cut(s) 125, 716, 1466, 2876, 3189, 3227
MmeI TCCRAC 4 cut(s) 177, 1369, 2820, 3217
Mox20I TGGCCA 1 cut(s) 2262
Mph1103I ATGCAT 1 cut(s) 1506
MscI TGGCCA 1 cut(s) 2262
MslI CAYNNNNRTG 2 cut(s) 228, 2171
Msp20I TGGCCA 1 cut(s) 2262
MspA1I CMGCKG 2 cut(s) 1856, 2266
MspCI CTTAAG 2 cut(s) 752, 3691
MspI CCGG 1 cut(s) 1599
MspR9I CCNGG 4 cut(s) 29, 1599, 2652, 3228
MunI CAATTG 4 cut(s) 1182, 1662, 2495, 3781
MvaI CCWGG 3 cut(s) 29, 2652, 3228
MvnI CGCG 3 cut(s) 163, 2762, 2913
MwoI GCNNNNNNNGC 9 cut(s) 56, 127, 224, 776, 785, 2018, 2238, 2556, 3804
NciI CCSGG 1 cut(s) 1599
NcoI CCATGG 1 cut(s) 2298
NlaIV GGNNCC 2 cut(s) 1966, 2924
NmeAIII GCCGAG 1 cut(s) 3123
NmuCI GTSAC 4 cut(s) 934, 2099, 2446, 3629
NsiI ATGCAT 1 cut(s) 1506
NspI RCATGY 6 cut(s) 767, 1826, 1844, 1994, 2934, 3426
NspV TTCGAA 1 cut(s) 3361
PagI TCATGA 2 cut(s) 1516, 1698
PciI ACATGT 4 cut(s) 1822, 1840, 1990, 3422
PflMI CCANNNNNTGG 2 cut(s) 2258, 3621
PleI GAGTC 6 cut(s) 124, 716, 1466, 2875, 3189, 3226
PpsI GAGTC 6 cut(s) 124, 716, 1466, 2875, 3189, 3226
Ppu21I YACGTR 2 cut(s) 1616, 3460
PscI ACATGT 4 cut(s) 1822, 1840, 1990, 3422
PshAI GACNNNNGTC 1 cut(s) 3783
PsiI TTATAA 2 cut(s) 1746, 1980
Psp6I CCWGG 3 cut(s) 27, 2650, 3226
PspFI CCCAGC 2 cut(s) 1856, 2251
PspGI CCWGG 3 cut(s) 27, 2650, 3226
PspN4I GGNNCC 2 cut(s) 1966, 2924
PspPI GGNCC 3 cut(s) 2476, 3040, 3491
PstI CTGCAG 1 cut(s) 772
PstNI CAGNNNCTG 2 cut(s) 1651, 2776
PsuI RGATCY 2 cut(s) 738, 2922
PvuII CAGCTG 2 cut(s) 1856, 2266
RsaI GTAC 8 cut(s) 1119, 1550, 1924, 1966, 2112, 2753, 3286, 3479
RsaNI GTAC 8 cut(s) 1118, 1549, 1923, 1965, 2111, 2752, 3285, 3478
RseI CAYNNNNRTG 2 cut(s) 228, 2171
SalI GTCGAC 1 cut(s) 719
Sau96I GGNCC 3 cut(s) 2476, 3040, 3491
ScaI AGTACT 3 cut(s) 1550, 2753, 3479
SchI GAGTC 6 cut(s) 125, 716, 1466, 2876, 3189, 3227
ScrFI CCNGG 4 cut(s) 29, 1599, 2652, 3228
SduI GDGCHC 5 cut(s) 1060, 2509, 2826, 2892, 3152
SfcI CTRYAG 4 cut(s) 472, 768, 780, 1062
SfuI TTCGAA 1 cut(s) 3361
SinI GGWCC 1 cut(s) 3491
SmiMI CAYNNNNRTG 2 cut(s) 228, 2171
SspI AATATT 3 cut(s) 1230, 1424, 1432
StyD4I CCNGG 4 cut(s) 27, 1597, 2650, 3226
StyI CCWWGG 3 cut(s) 916, 980, 2298
TaaI ACNGT 9 cut(s) 69, 1969, 2090, 2099, 2452, 2486, 2894, 3341, 3358
TaiI ACGT 9 cut(s) 237, 271, 906, 1534, 1618, 3020, 3149, 3462, 3608
TaqI TCGA 7 cut(s) 265, 720, 725, 1544, 3259, 3361, 3777
TatI WGTACW 4 cut(s) 1548, 2110, 2751, 3477
TauI GCSGC 5 cut(s) 446, 2128, 3180, 3243, 3822
TscAI CASTG 5 cut(s) 777, 2095, 2104, 3439, 3865
TseFI GTSAC 4 cut(s) 934, 2099, 2446, 3629
TseI GCWGC 9 cut(s) 23, 59, 767, 1651, 2266, 2757, 3003, 3111, 3114
Tsp45I GTSAC 4 cut(s) 934, 2099, 2446, 3629
TspGWI ACGGA 6 cut(s) 3013, 3245, 3377, 3483, 3721, 3787
TspRI CASTG 5 cut(s) 777, 2095, 2104, 3439, 3865
Van91I CCANNNNNTGG 2 cut(s) 2258, 3621
Vha464I CTTAAG 2 cut(s) 752, 3691
VpaK11BI GGWCC 1 cut(s) 3491
XagI CCTNNNNNAGG 1 cut(s) 806
XapI RAATTY 8 cut(s) 8, 1204, 1265, 1322, 1624, 1804, 2144, 2985
XbaI TCTAGA 4 cut(s) 1396, 2863, 3214, 3349
XceI RCATGY 6 cut(s) 767, 1826, 1844, 1994, 2934, 3426
XcmI CCANNNNNNNNNTGG 2 cut(s) 610, 3054
XmaJI CCTAGG 1 cut(s) 980
XmiI GTMKAC 5 cut(s) 704, 720, 2077, 2950, 3427
ZraI GACGTC 1 cut(s) 3606
ZrmI AGTACT 3 cut(s) 1550, 2753, 3479
Zsp2I ATGCAT 1 cut(s) 1506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.