disease resistance
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 46 - 77 | 4e-08 | PPR repeat family |
| PPR | PF01535 | 48 - 77 | 2.2e-09 | PPR repeat |
| PPR_2 | PF13041 | 77 - 109 | 4e-07 | PPR repeat family |
| PPR | PF01535 | 79 - 109 | 1.8e-08 | PPR repeat |
| PPR | PF01535 | 110 - 140 | 3.6e-07 | PPR repeat |
| PPR_2 | PF13041 | 200 - 232 | 3.5e-07 | PPR repeat family |
| PPR_1 | PF12854 | 200 - 228 | 3e-06 | PPR repeat |
| PPR | PF01535 | 203 - 232 | 1.8e-06 | PPR repeat |
| PPR_2 | PF13041 | 263 - 293 | 2e-06 | PPR repeat family |
| PPR | PF01535 | 265 - 293 | 1.9e-06 | PPR repeat |
| PPR_2 | PF13041 | 394 - 441 | 3.8e-12 | PPR repeat family |
| PPR | PF01535 | 397 - 427 | 1.1e-08 | PPR repeat |
| E_motif | PF20431 | 512 - 574 | 2.9e-21 | E motif |
| DYW_deaminase | PF14432 | 611 - 703 | 8.7e-44 | DYW family of nucleic acid deaminases |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 844 |
| AccB1I | GGYRCC | 2 cut(s) | 1508, 1942 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 652, 1503, 1894 |
| AccII | CGCG | 1 cut(s) | 571 |
| AciI | CCGC | 5 cut(s) | 4, 556, 593, 1553, 1562 |
| AclWI | GGATC | 1 cut(s) | 752 |
| AcoI | YGGCCR | 2 cut(s) | 460, 823 |
| AcsI | RAATTY | 1 cut(s) | 372 |
| AcuI | CTGAAG | 2 cut(s) | 585, 741 |
| AdeI | CACNNNGTG | 1 cut(s) | 735 |
| AfaI | GTAC | 4 cut(s) | 728, 1048, 1737, 1835 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 147, 396, 652, 832, 1147, 1503, 1894 |
| AflII | CTTAAG | 1 cut(s) | 1937 |
| AgsI | TTSAA | 5 cut(s) | 176, 309, 455, 677, 1259 |
| AjnI | CCWGG | 5 cut(s) | 146, 406, 1393, 1443, 1702 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1532, 1564 |
| Alw21I | GWGCWC | 1 cut(s) | 1271 |
| Alw26I | GTCTC | 3 cut(s) | 1751, 1798, 2094 |
| AlwI | GGATC | 1 cut(s) | 752 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1400 |
| Ama87I | CYCGRG | 1 cut(s) | 188 |
| AoxI | GGCC | 7 cut(s) | 288, 460, 553, 823, 980, 1441, 1765 |
| ApeKI | GCWGC | 1 cut(s) | 1848 |
| ApoI | RAATTY | 1 cut(s) | 372 |
| AspLEI | GCGC | 1 cut(s) | 571 |
| AspS9I | GGNCC | 3 cut(s) | 289, 981, 1885 |
| AsuC2I | CCSGG | 3 cut(s) | 259, 292, 464 |
| AsuHPI | GGTGA | 6 cut(s) | 445, 1081, 1187, 1288, 1692, 1978 |
| AvaI | CYCGRG | 1 cut(s) | 188 |
| AvaII | GGWCC | 1 cut(s) | 1885 |
| AxyI | CCTNAGG | 1 cut(s) | 1664 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 803, 836 |
| BalI | TGGCCA | 1 cut(s) | 825 |
| BanI | GGYRCC | 2 cut(s) | 1508, 1942 |
| BanII | GRGCYC | 1 cut(s) | 1590 |
| BbsI | GAAGAC | 1 cut(s) | 1153 |
| Bbv12I | GWGCWC | 1 cut(s) | 1271 |
| BbvI | GCAGC | 1 cut(s) | 1860 |
| BccI | CCATC | 8 cut(s) | 271, 337, 452, 499, 715, 1638, 1669, 2075 |
| BciT130I | CCWGG | 5 cut(s) | 148, 408, 1395, 1445, 1704 |
| BciVI | GTATCC | 1 cut(s) | 1272 |
| BclI | TGATCA | 4 cut(s) | 883, 1039, 1113, 1785 |
| BcnI | CCSGG | 3 cut(s) | 259, 292, 464 |
| BcoDI | GTCTC | 3 cut(s) | 1751, 1798, 2094 |
| BfaI | CTAG | 4 cut(s) | 72, 663, 1583, 1808 |
| BfmI | CTRYAG | 2 cut(s) | 1708, 1920 |
| BfrI | CTTAAG | 1 cut(s) | 1937 |
| BfuAI | ACCTGC | 1 cut(s) | 844 |
| BfuI | GTATCC | 1 cut(s) | 1272 |
| BisI | GCNGC | 4 cut(s) | 556, 593, 1563, 1849 |
| BlsI | GCNGC | 4 cut(s) | 557, 594, 1564, 1850 |
| Bme1390I | CCNGG | 8 cut(s) | 148, 259, 292, 408, 464, 1395, 1445, 1704 |
| Bme18I | GGWCC | 1 cut(s) | 1885 |
| BmeT110I | CYCGRG | 1 cut(s) | 188 |
| BmgT120I | GGNCC | 3 cut(s) | 289, 981, 1885 |
| BmiI | GGNNCC | 3 cut(s) | 1510, 1681, 1944 |
| BmrFI | CCNGG | 8 cut(s) | 148, 259, 292, 408, 464, 1395, 1445, 1704 |
| BmrI | ACTGGG | 2 cut(s) | 1057, 2040 |
| BmsI | GCATC | 9 cut(s) | 393, 486, 579, 672, 705, 1483, 1640, 1944, 2044 |
| BmuI | ACTGGG | 2 cut(s) | 1057, 2040 |
| BpiI | GAAGAC | 1 cut(s) | 1153 |
| BpuMI | CCSGG | 3 cut(s) | 259, 292, 464 |
| BsaI | GGTCTC | 1 cut(s) | 1751 |
| BsaJI | CCNNGG | 1 cut(s) | 189 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 147, 396, 652, 832, 1147, 1503, 1894 |
| Bse118I | RCCGGY | 1 cut(s) | 778 |
| Bse1I | ACTGG | 4 cut(s) | 1063, 1216, 1481, 2035 |
| Bse21I | CCTNAGG | 1 cut(s) | 1664 |
| Bse3DI | GCAATG | 3 cut(s) | 780, 813, 1464 |
| BseBI | CCWGG | 5 cut(s) | 148, 408, 1395, 1445, 1704 |
| BseDI | CCNNGG | 1 cut(s) | 189 |
| BseGI | GGATG | 9 cut(s) | 282, 514, 661, 1189, 1631, 1876, 1959, 2059, 2086 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 147, 396, 652, 832, 1147, 1503, 1894 |
| BseMI | GCAATG | 3 cut(s) | 780, 813, 1464 |
| BseMII | CTCAG | 5 cut(s) | 77, 120, 375, 1119, 1655 |
| BseNI | ACTGG | 4 cut(s) | 1063, 1216, 1481, 2035 |
| BseXI | GCAGC | 1 cut(s) | 1860 |
| BseYI | CCCAGC | 1 cut(s) | 1829 |
| BsgI | GTGCAG | 3 cut(s) | 19, 659, 1386 |
| Bsh1236I | CGCG | 1 cut(s) | 571 |
| BshFI | GGCC | 7 cut(s) | 290, 462, 555, 825, 982, 1443, 1767 |
| BshNI | GGYRCC | 2 cut(s) | 1508, 1942 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1271 |
| BsiHKCI | CYCGRG | 1 cut(s) | 188 |
| BsiSI | CCGG | 6 cut(s) | 258, 292, 314, 463, 500, 779 |
| BslFI | GGGAC | 3 cut(s) | 373, 459, 1378 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 147, 396, 652, 832, 1147, 1503, 1894 |
| BsmAI | GTCTC | 3 cut(s) | 1751, 1798, 2094 |
| BsmFI | GGGAC | 3 cut(s) | 373, 459, 1378 |
| BsmI | GAATGC | 2 cut(s) | 106, 222 |
| BsnI | GGCC | 7 cut(s) | 290, 462, 555, 825, 982, 1443, 1767 |
| Bso31I | GGTCTC | 1 cut(s) | 1751 |
| BsoBI | CYCGRG | 1 cut(s) | 188 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1271, 1590 |
| Bsp143I | GATC | 8 cut(s) | 744, 883, 1039, 1084, 1113, 1423, 1785, 2040 |
| BspACI | CCGC | 5 cut(s) | 4, 556, 593, 1553, 1562 |
| BspANI | GGCC | 7 cut(s) | 290, 462, 555, 825, 982, 1443, 1767 |
| BspCNI | CTCAG | 5 cut(s) | 76, 121, 376, 1118, 1656 |
| BspFNI | CGCG | 1 cut(s) | 571 |
| BspHI | TCATGA | 2 cut(s) | 1351, 1788 |
| BspLI | GGNNCC | 3 cut(s) | 1510, 1681, 1944 |
| BspMI | ACCTGC | 1 cut(s) | 844 |
| BspPI | GGATC | 1 cut(s) | 752 |
| BspT107I | GGYRCC | 2 cut(s) | 1508, 1942 |
| BspTI | CTTAAG | 1 cut(s) | 1937 |
| BspTNI | GGTCTC | 1 cut(s) | 1751 |
| BsrDI | GCAATG | 3 cut(s) | 780, 813, 1464 |
| BsrFI | RCCGGY | 1 cut(s) | 778 |
| BsrI | ACTGG | 4 cut(s) | 1063, 1216, 1481, 2035 |
| BssAI | RCCGGY | 1 cut(s) | 778 |
| BssECI | CCNNGG | 1 cut(s) | 189 |
| BssMI | GATC | 8 cut(s) | 744, 883, 1039, 1084, 1113, 1423, 1785, 2040 |
| Bst2UI | CCWGG | 5 cut(s) | 148, 408, 1395, 1445, 1704 |
| Bst4CI | ACNGT | 4 cut(s) | 142, 248, 433, 1907 |
| Bst6I | CTCTTC | 1 cut(s) | 1872 |
| BstAFI | CTTAAG | 1 cut(s) | 1937 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1409 |
| BstC8I | GCNNGC | 6 cut(s) | 78, 553, 1414, 1441, 1525, 1917 |
| BstDEI | CTNAG | 6 cut(s) | 63, 129, 224, 384, 1105, 1664 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1145 |
| BstF5I | GGATG | 9 cut(s) | 282, 514, 661, 1189, 1631, 1876, 1959, 2059, 2086 |
| BstFNI | CGCG | 1 cut(s) | 571 |
| BstHHI | GCGC | 1 cut(s) | 571 |
| BstKTI | GATC | 8 cut(s) | 747, 886, 1042, 1087, 1116, 1426, 1788, 2043 |
| BstMAI | GTCTC | 3 cut(s) | 1751, 1798, 2094 |
| BstMBI | GATC | 8 cut(s) | 744, 883, 1039, 1084, 1113, 1423, 1785, 2040 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 82, 803, 1409, 1559, 1845 |
| BstNI | CCWGG | 5 cut(s) | 148, 408, 1395, 1445, 1704 |
| BstNSI | RCATGY | 3 cut(s) | 1323, 1527, 1781 |
| BstSCI | CCNGG | 8 cut(s) | 146, 257, 290, 406, 462, 1393, 1443, 1702 |
| BstSFI | CTRYAG | 2 cut(s) | 1708, 1920 |
| BstUI | CGCG | 1 cut(s) | 571 |
| BstV1I | GCAGC | 1 cut(s) | 1860 |
| BstV2I | GAAGAC | 1 cut(s) | 1153 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1664 |
| BsuI | GTATCC | 1 cut(s) | 1272 |
| BsuRI | GGCC | 7 cut(s) | 290, 462, 555, 825, 982, 1443, 1767 |
| BtgZI | GCGATG | 1 cut(s) | 728 |
| BtsCI | GGATG | 9 cut(s) | 282, 514, 661, 1189, 1631, 1876, 1959, 2059, 2086 |
| BtsIMutI | CAGTG | 4 cut(s) | 795, 1209, 1488, 1912 |
| BveI | ACCTGC | 1 cut(s) | 844 |
| Cac8I | GCNNGC | 6 cut(s) | 78, 553, 1414, 1441, 1525, 1917 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1400 |
| CciI | TCATGA | 2 cut(s) | 1351, 1788 |
| CfoI | GCGC | 1 cut(s) | 571 |
| Cfr10I | RCCGGY | 1 cut(s) | 778 |
| Cfr13I | GGNCC | 3 cut(s) | 289, 981, 1885 |
| Csp6I | GTAC | 4 cut(s) | 727, 1047, 1736, 1834 |
| CviQI | GTAC | 4 cut(s) | 727, 1047, 1736, 1834 |
| DdeI | CTNAG | 6 cut(s) | 63, 129, 224, 384, 1105, 1664 |
| DpnI | GATC | 8 cut(s) | 746, 885, 1041, 1086, 1115, 1425, 1787, 2042 |
| DpnII | GATC | 8 cut(s) | 744, 883, 1039, 1084, 1113, 1423, 1785, 2040 |
| DraIII | CACNNNGTG | 1 cut(s) | 735 |
| EaeI | YGGCCR | 2 cut(s) | 460, 823 |
| Eam1104I | CTCTTC | 1 cut(s) | 1872 |
| EarI | CTCTTC | 1 cut(s) | 1872 |
| EciI | GGCGGA | 1 cut(s) | 1568 |
| Eco24I | GRGCYC | 1 cut(s) | 1590 |
| Eco31I | GGTCTC | 1 cut(s) | 1751 |
| Eco32I | GATATC | 3 cut(s) | 255, 627, 1294 |
| Eco47I | GGWCC | 1 cut(s) | 1885 |
| Eco57I | CTGAAG | 2 cut(s) | 585, 741 |
| Eco81I | CCTNAGG | 1 cut(s) | 1664 |
| Eco88I | CYCGRG | 1 cut(s) | 188 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1145 |
| EcoRII | CCWGG | 5 cut(s) | 146, 406, 1393, 1443, 1702 |
| EcoRV | GATATC | 3 cut(s) | 255, 627, 1294 |
| EcoT22I | ATGCAT | 1 cut(s) | 1633 |
| EcoT38I | GRGCYC | 1 cut(s) | 1590 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2069, 2101 |
| FaqI | GGGAC | 3 cut(s) | 373, 459, 1378 |
| FauNDI | CATATG | 2 cut(s) | 1536, 1740 |
| FbaI | TGATCA | 4 cut(s) | 883, 1039, 1113, 1785 |
| Fnu4HI | GCNGC | 4 cut(s) | 556, 593, 1563, 1849 |
| FokI | GGATG | 9 cut(s) | 289, 521, 668, 1196, 1618, 1883, 1966, 2066, 2093 |
| FriOI | GRGCYC | 1 cut(s) | 1590 |
| Fsp4HI | GCNGC | 4 cut(s) | 556, 593, 1563, 1849 |
| FspBI | CTAG | 4 cut(s) | 72, 663, 1583, 1808 |
| GlaI | GCGC | 1 cut(s) | 570 |
| GluI | GCNGC | 4 cut(s) | 556, 593, 1563, 1849 |
| GsaI | CCCAGC | 1 cut(s) | 1833 |
| HaeIII | GGCC | 7 cut(s) | 290, 462, 555, 825, 982, 1443, 1767 |
| HapII | CCGG | 6 cut(s) | 258, 292, 314, 463, 500, 779 |
| HhaI | GCGC | 1 cut(s) | 571 |
| Hin6I | GCGC | 1 cut(s) | 569 |
| HinP1I | GCGC | 1 cut(s) | 569 |
| HindIII | AAGCTT | 3 cut(s) | 668, 1024, 1242 |
| HinfI | GANTC | 5 cut(s) | 305, 386, 451, 1932, 1975 |
| HpaII | CCGG | 6 cut(s) | 258, 292, 314, 463, 500, 779 |
| HphI | GGTGA | 6 cut(s) | 445, 1081, 1187, 1288, 1692, 1978 |
| Hpy166II | GTNNAC | 8 cut(s) | 336, 429, 708, 729, 740, 954, 1049, 1746 |
| Hpy188I | TCNGA | 6 cut(s) | 66, 379, 480, 760, 888, 999 |
| Hpy188III | TCNNGA | 9 cut(s) | 97, 268, 455, 1037, 1088, 1352, 1363, 1789, 1888 |
| Hpy8I | GTNNAC | 8 cut(s) | 336, 429, 708, 729, 740, 954, 1049, 1746 |
| HpyAV | CCTTC | 5 cut(s) | 965, 1002, 1141, 1330, 1876 |
| HpyCH4III | ACNGT | 4 cut(s) | 142, 248, 433, 1907 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 82, 803, 1409, 1559, 1845 |
| HpyF3I | CTNAG | 6 cut(s) | 63, 129, 224, 384, 1105, 1664 |
| HspAI | GCGC | 1 cut(s) | 569 |
| Ksp22I | TGATCA | 4 cut(s) | 883, 1039, 1113, 1785 |
| Kzo9I | GATC | 8 cut(s) | 744, 883, 1039, 1084, 1113, 1423, 1785, 2040 |
| LmnI | GCTCC | 1 cut(s) | 1679 |
| Lsp1109I | GCAGC | 1 cut(s) | 1860 |
| LweI | GCATC | 9 cut(s) | 393, 486, 579, 672, 705, 1483, 1640, 1944, 2044 |
| MaeI | CTAG | 4 cut(s) | 72, 663, 1583, 1808 |
| MaeIII | GTNAC | 3 cut(s) | 607, 1698, 2026 |
| MalI | GATC | 8 cut(s) | 746, 885, 1041, 1086, 1115, 1425, 1787, 2042 |
| MboI | GATC | 8 cut(s) | 744, 883, 1039, 1084, 1113, 1423, 1785, 2040 |
| MboII | GAAGA | 7 cut(s) | 703, 854, 1153, 1886, 1889, 1970, 1984 |
| MhlI | GDGCHC | 2 cut(s) | 1271, 1590 |
| MlsI | TGGCCA | 1 cut(s) | 825 |
| MluCI | AATT | 9 cut(s) | 58, 203, 372, 932, 947, 985, 1079, 1203, 2007 |
| MluNI | TGGCCA | 1 cut(s) | 825 |
| MlyI | GAGTC | 2 cut(s) | 395, 1926 |
| MmeI | TCCRAC | 1 cut(s) | 1524 |
| Mox20I | TGGCCA | 1 cut(s) | 825 |
| Mph1103I | ATGCAT | 1 cut(s) | 1633 |
| MscI | TGGCCA | 1 cut(s) | 825 |
| MseI | TTAA | 9 cut(s) | 783, 945, 959, 1128, 1466, 1820, 1938, 2010, 2076 |
| MslI | CAYNNNNRTG | 3 cut(s) | 600, 1793, 1964 |
| Msp20I | TGGCCA | 1 cut(s) | 825 |
| MspCI | CTTAAG | 1 cut(s) | 1937 |
| MspI | CCGG | 6 cut(s) | 258, 292, 314, 463, 500, 779 |
| MspR9I | CCNGG | 8 cut(s) | 148, 259, 292, 408, 464, 1395, 1445, 1704 |
| Mva1269I | GAATGC | 2 cut(s) | 106, 222 |
| MvaI | CCWGG | 5 cut(s) | 148, 408, 1395, 1445, 1704 |
| MvnI | CGCG | 1 cut(s) | 571 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 82, 803, 1409, 1559, 1845 |
| NciI | CCSGG | 3 cut(s) | 259, 292, 464 |
| NdeI | CATATG | 2 cut(s) | 1536, 1740 |
| NdeII | GATC | 8 cut(s) | 744, 883, 1039, 1084, 1113, 1423, 1785, 2040 |
| NlaIV | GGNNCC | 3 cut(s) | 1510, 1681, 1944 |
| NmeAIII | GCCGAG | 1 cut(s) | 61 |
| NmuCI | GTSAC | 1 cut(s) | 1698 |
| NsiI | ATGCAT | 1 cut(s) | 1633 |
| NspI | RCATGY | 3 cut(s) | 1323, 1527, 1781 |
| PaeI | GCATGC | 1 cut(s) | 1527 |
| PagI | TCATGA | 2 cut(s) | 1351, 1788 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 338, 710 |
| PctI | GAATGC | 2 cut(s) | 106, 222 |
| PfeI | GAWTC | 3 cut(s) | 305, 451, 1975 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 652, 1503, 1894 |
| PfoI | TCCNGGA | 1 cut(s) | 146 |
| PkrI | GCNGC | 4 cut(s) | 557, 594, 1564, 1850 |
| PleI | GAGTC | 2 cut(s) | 394, 1926 |
| PpsI | GAGTC | 2 cut(s) | 394, 1926 |
| Psp6I | CCWGG | 5 cut(s) | 146, 406, 1393, 1443, 1702 |
| PspFI | CCCAGC | 1 cut(s) | 1829 |
| PspGI | CCWGG | 5 cut(s) | 146, 406, 1393, 1443, 1702 |
| PspN4I | GGNNCC | 3 cut(s) | 1510, 1681, 1944 |
| PspPI | GGNCC | 3 cut(s) | 289, 981, 1885 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1719, 1751 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1400 |
| RsaI | GTAC | 4 cut(s) | 728, 1048, 1737, 1835 |
| RsaNI | GTAC | 4 cut(s) | 727, 1047, 1736, 1834 |
| RseI | CAYNNNNRTG | 3 cut(s) | 600, 1793, 1964 |
| SaqAI | TTAA | 9 cut(s) | 783, 945, 959, 1128, 1466, 1820, 1938, 2010, 2076 |
| SatI | GCNGC | 4 cut(s) | 556, 593, 1563, 1849 |
| Sau3AI | GATC | 8 cut(s) | 744, 883, 1039, 1084, 1113, 1423, 1785, 2040 |
| Sau96I | GGNCC | 3 cut(s) | 289, 981, 1885 |
| SchI | GAGTC | 2 cut(s) | 395, 1926 |
| ScrFI | CCNGG | 8 cut(s) | 148, 259, 292, 408, 464, 1395, 1445, 1704 |
| SduI | GDGCHC | 2 cut(s) | 1271, 1590 |
| SfaNI | GCATC | 9 cut(s) | 393, 486, 579, 672, 705, 1483, 1640, 1944, 2044 |
| SfcI | CTRYAG | 2 cut(s) | 1708, 1920 |
| SinI | GGWCC | 1 cut(s) | 1885 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 600, 1793, 1964 |
| SmlI | CTYRAG | 1 cut(s) | 1937 |
| SmoI | CTYRAG | 1 cut(s) | 1937 |
| SphI | GCATGC | 1 cut(s) | 1527 |
| Sse9I | AATT | 9 cut(s) | 58, 203, 372, 932, 947, 985, 1079, 1203, 2007 |
| SsiI | CCGC | 5 cut(s) | 4, 556, 593, 1553, 1562 |
| SspMI | CTAG | 4 cut(s) | 72, 663, 1583, 1808 |
| StyD4I | CCNGG | 8 cut(s) | 146, 257, 290, 406, 462, 1393, 1443, 1702 |
| TaaI | ACNGT | 4 cut(s) | 142, 248, 433, 1907 |
| TaqI | TCGA | 8 cut(s) | 10, 96, 117, 341, 582, 1164, 1389, 1435 |
| TasI | AATT | 9 cut(s) | 58, 203, 372, 932, 947, 985, 1079, 1203, 2007 |
| TatI | WGTACW | 1 cut(s) | 1735 |
| TauI | GCSGC | 3 cut(s) | 558, 595, 1565 |
| TfiI | GAWTC | 3 cut(s) | 305, 451, 1975 |
| Tru1I | TTAA | 9 cut(s) | 783, 945, 959, 1128, 1466, 1820, 1938, 2010, 2076 |
| Tru9I | TTAA | 9 cut(s) | 783, 945, 959, 1128, 1466, 1820, 1938, 2010, 2076 |
| TscAI | CASTG | 4 cut(s) | 795, 1216, 1488, 1912 |
| TseFI | GTSAC | 1 cut(s) | 1698 |
| TseI | GCWGC | 1 cut(s) | 1848 |
| Tsp45I | GTSAC | 1 cut(s) | 1698 |
| TspDTI | ATGAA | 7 cut(s) | 135, 930, 1385, 1553, 1887, 1985, 2057 |
| TspGWI | ACGGA | 2 cut(s) | 757, 934 |
| TspRI | CASTG | 4 cut(s) | 795, 1216, 1488, 1912 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 652, 1503, 1894 |
| Vha464I | CTTAAG | 1 cut(s) | 1937 |
| VpaK11BI | GGWCC | 1 cut(s) | 1885 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1145 |
| XapI | RAATTY | 1 cut(s) | 372 |
| XceI | RCATGY | 3 cut(s) | 1323, 1527, 1781 |
| XspI | CTAG | 4 cut(s) | 72, 663, 1583, 1808 |
| Zsp2I | ATGCAT | 1 cut(s) | 1633 |