Rorug04G0154900

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
27107142 .. 27110441
3300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0154900.1

Sequence Viewer

Length: 1611 bp
ATGGGAAGTTGCGTTTGTACACCTGCCAAAGCAGGTTTACTACACAAAAAACACAGAGATCAGGTGATCAAGCCTATACCCCAATGTGTTCATGACTCGCCTCAAAAGTCGTCGCACCACCGCGGGGGCTTCTCGGCCCCCATCTCGGTGCTGGACAAGACCGATGGAGAAAACATCCTTGACAAGTACAAGTTAGGCAAGGAGTTGGGGCGAGGGGAGTTTGGAATCACCCACCGATGCGTGGACCGGCAGACCGGAGAGACCTTCGCGTGCAAGGTGATATCAAAGAGCAAGTTGAAGACAGAGATTGACATTGAAGACGTGAGGAGGGAGGCCGAGATCATGAGGCTTTTGCCCAAGCACCCCAACATCGTCACCTTCAAGGAGGCTTATGAGGACAAGGATGCAGTTTATCTTGTCATGGAGCTCTGTGAGGGCGGCGAGCTTTTCGATAGGATCGTCACAAAAGGCCACTACACAGAGCGCGCCGCCGCCCACGTTACCAAGACAATTCTCGAGGTTTGCAAGGTATGCCACGAGCATGGAGTGATTCATCGAGACCTGAAACCCGAGAATTTCCTTTTTGCAGATAGTAGTGAAAATGCACAGTTAAAGGCAATTGATTTTGGTCTTTCAGTAAATTATGAACCAGGTCAGAGATTCTACGAAATTGTTGGAAGTCCATATTACATGGCTCCAGAGGTATTAAGACGTAATTATGGGCCTGAAGTTGATGTTTGGAGCGCAGGAGTTATCCTCTATATCCTACTTTGTGGAGTTCCTCCATTTTGGGCAGAAACTGAAGAAGGGATTGCACAGGCTATTATTCGGGGTAACATTGATTTTCAGAAGGATACATGGAAAAAGGTTTCTGAGGAAGCAAAATTACTAGTGAGGAGTATGCTTGACCCAAATCCTTACAACAGACTCACAGTTGAAGAAGTCCTTGATCATCCCTGGATACGAAATGCAAATCAAGTTCCGAATGTTCCTCTGGCAGAAAATGTCAGATTAAGGATCAAGCAGTTCACATTGATGAATAAATTTAAGAAGAAAGTTCTCAGAGTGGTGGCAGACAACCTGCCAGATGAACAAATAGAAGGAATCAGACAGATATTTGATATGATGGACACCGATAACAATGGAGACTTGACTTTTGAAGAGCTTAGGGATGGTCTTCTCAAGATTGGACACCAAGTCACTGATCCTGATGTGCAAATGTTAATTGATGCCGCGGATGTCGATGGAAGTGGCACACTGAACTGTGAGGAGTTCGTTATTGTGTCTGTTCACTTGAAAAAAATAAGCAGCGACGAACTTCTCGCTCAAGCTTTTAGCTATTTTGACAAGAACAACAGCAACTATATTGAGTTTGATGAGTTAAGAGAAGCATTGCTGGATGATAAACTTGGTCCTACTAATGAGCAGGTTATCCAAGACATCATATTCGATGTGGACTTGGACAAGGATGGGCGAATCGGTTATGAGGAGTTTAAAGCAATGATGAAAACCGGTATGGACTGGAAAATGGCTTCTCGTCAATATTCAAGAGCAATGCTTAATGTACTTAGCCGAAAGTTGTTAAAAGACAAGTCGATCCAAGTGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

536

Amino Acids

61.02

Weight (kDa)

5.51

Isoelectric Point (pI)

33.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 63 - 321 2.9e-79 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 64 - 316 2.6e-28 Protein tyrosine and serine/threonine kinase
ABC1 PF03109 136 - 220 9.2e-06 ABC1 atypical kinase-like domain
EF-hand_7 PF13499 367 - 426 2e-10 EF-hand domain pair
EF-hand_1 PF00036 369 - 393 9.2e-06 EF hand domain
EF-hand_6 PF13405 369 - 397 7.2e-06 EF-hand domain
EF-hand_8 PF13833 381 - 431 7.2e-08 EF-hand domain pair
EF-hand_7 PF13499 441 - 503 1.4e-13 EF-hand domain pair
EF-hand_1 PF00036 478 - 504 7.1e-06 EF hand domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000029)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13530 FvH4_4g18270 FvH4_6g12200 FvH4_6g12460 FvH4_6g12461 FvH4_6g13450 FvH4_6g15090 FvH4_6g15220 FvH4_6g15230 FvH4_6g15250 FvH4_6g15251 FvH4_6g15340 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47980 FvH4_6g47980 FvH4_6g47980 FvH4_6g48170 FvH4_6g48310 FvH4_6g48310 FvH4_6g48850 FvH4_6g48881 FvH4_7g11830
malus_domestica MD02G1059900.v1.1 MD02G1069600.v1.1 MD02G1069700.v1.1 MD02G1070100.v1.1 MD02G1070200.v1.1 MD02G1070300.v1.1 MD02G1070800.v1.1 MD02G1070900.v1.1 MD02G1071200.v1.1 MD02G1071400.v1.1 MD02G1071900.v1.1 MD02G1075200.v1.1 MD03G1048000.v1.1 MD03G1049100.v1.1 MD03G1049200.v1.1 MD03G1052500.v1.1 MD03G1054100.v1.1 MD03G1054300.v1.1 MD03G1054400.v1.1 MD04G1113400.v1.1 MD04G1211100.v1.1 MD04G1211200.v1.1 MD05G1174900.v1.1 MD05G1175000.v1.1 MD05G1175900.v1.1 MD05G1243400.v1.1 MD07G1031500.v1.1 MD07G1031600.v1.1 MD07G1032500.v1.1 MD11G1046800.v1.1 MD11G1046900.v1.1 MD11G1047000.v1.1 MD11G1050400.v1.1 MD11G1050600.v1.1 MD11G1050800.v1.1 MD11G1051100.v1.1 MD11G1051600.v1.1 MD11G1051700.v1.1 MD11G1054600.v1.1 MD11G1055600.v1.1 MD11G1055700.v1.1 MD11G1055800.v1.1 MD11G1056000.v1.1 MD12G1126600.v1.1 MD12G1126700.v1.1 MD12G1126800.v1.1 MD12G1127300.v1.1 MD12G1127600.v1.1 MD12G1127900.v1.1 MD12G1128100.v1.1 MD12G1128300.v1.1 MD15G1261500.v1.1
prunus_persica Prupe.1G010700_v2.0.a1 Prupe.1G010800_v2.0.a1 Prupe.1G011000_v2.0.a1 Prupe.1G159600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163700_v2.0.a1 Prupe.1G163700_v2.0.a1 Prupe.1G163800_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G235500_v2.0.a1 Prupe.2G067400_v2.0.a1 Prupe.2G067500_v2.0.a1 Prupe.2G111700_v2.0.a1 Prupe.2G111800_v2.0.a1 Prupe.3G012000_v2.0.a1 Prupe.6G243400_v2.0.a1 Prupe.6G243500_v2.0.a1 Prupe.6G243600_v2.0.a1 Prupe.6G243700_v2.0.a1 Prupe.6G243800_v2.0.a1 Prupe.6G243900_v2.0.a1
pyrus_communis pycom02g04860 pycom02g04880 pycom02g04890 pycom02g05510 pycom02g05520 pycom02g05600 pycom02g05930 pycom02g06000 pycom02g06010 pycom03g03800 pycom03g03860 pycom03g03880 pycom03g03890 pycom03g03910 pycom03g03920 pycom03g04200 pycom03g04290 pycom03g04300 pycom03g04310 pycom03g04320 pycom03g09260 pycom04g10150 pycom04g10160 pycom04g10170 pycom05g16180 pycom05g16190 pycom05g16240 pycom05g21980 pycom05g21990 pycom07g02280 pycom11g03800 pycom11g03810 pycom11g04080 pycom11g04140 pycom11g04150 pycom11g04160 pycom11g04570 pycom11g04580 pycom11g04590 pycom11g04610 pycom12g12470 pycom12g12490 pycom13g22050
rosa_chinensis RchiOBHm_Chr1g0317761 RchiOBHm_Chr1g0317821 RchiOBHm_Chr1g0317831 RchiOBHm_Chr1g0317871 RchiOBHm_Chr1g0350501 RchiOBHm_Chr2g0107631 RchiOBHm_Chr3g0452091 RchiOBHm_Chr3g0464001 RchiOBHm_Chr3g0464281 RchiOBHm_Chr3g0466331 RchiOBHm_Chr3g0467341 RchiOBHm_Chr3g0467381 RchiOBHm_Chr3g0467731 RchiOBHm_Chr3g0468291 RchiOBHm_Chr3g0468321 RchiOBHm_Chr3g0468341 RchiOBHm_Chr3g0468391 RchiOBHm_Chr3g0468411 RchiOBHm_Chr3g0468571 RchiOBHm_Chr3g0468591 RchiOBHm_Chr3g0490721 RchiOBHm_Chr3g0490751 RchiOBHm_Chr3g0490761 RchiOBHm_Chr3g0490771 RchiOBHm_Chr3g0490951 RchiOBHm_Chr3g0491001 RchiOBHm_Chr3g0491011 RchiOBHm_Chr4g0412461 RchiOBHm_Chr4g0414161 RchiOBHm_Chr4g0414181 RchiOBHm_Chr4g0414191 RchiOBHm_Chr4g0414281 RchiOBHm_Chr4g0414441 RchiOBHm_Chr4g0414521 RchiOBHm_Chr4g0414531 RchiOBHm_Chr4g0417011 RchiOBHm_Chr4g0417021 RchiOBHm_Chr4g0417041 RchiOBHm_Chr4g0417071 RchiOBHm_Chr4g0417101 RchiOBHm_Chr4g0417531 RchiOBHm_Chr4g0417641 RchiOBHm_Chr4g0417651 RchiOBHm_Chr4g0417701 RchiOBHm_Chr4g0417731 RchiOBHm_Chr4g0417741 RchiOBHm_Chr4g0417781 RchiOBHm_Chr4g0418751 RchiOBHm_Chr4g0418791 RchiOBHm_Chr4g0418861 RchiOBHm_Chr4g0418881 RchiOBHm_Chr4g0418901 RchiOBHm_Chr4g0422451 RchiOBHm_Chr4g0422461 RchiOBHm_Chr4g0422471 RchiOBHm_Chr4g0422541 RchiOBHm_Chr4g0422561 RchiOBHm_Chr4g0422591 RchiOBHm_Chr4g0422651 RchiOBHm_Chr4g0422661 RchiOBHm_Chr5g0003251 RchiOBHm_Chr5g0003261 RchiOBHm_Chr5g0055871 RchiOBHm_Chr7g0204701 RchiOBHm_Chr7g0204741
rosa_laevigata RLG00000007607 RLG00000007932 RLG00000017606 RLG00000024418 RLG00000025629 RLG00000030586
rosa_multiflora Rmu_co7959167.1_g000001 Rmu_co8021330.1_g000001 Rmu_co8132128.1_g000001 Rmu_co8224744.1_g000001 Rmu_co8281865.1_g000001 Rmu_co8298487.1_g000001 Rmu_co8319035.1_g000001 Rmu_co8380035.1_g000001 Rmu_co8385371.1_g000001 Rmu_co8398173.1_g000001 Rmu_co8423363.1_g000001 Rmu_co8438275.1_g000001 Rmu_co8474729.1_g000001 Rmu_sc0000057.1_g000008 Rmu_sc0000350.1_g000023 Rmu_sc0000480.1_g000005 Rmu_sc0000654.1_g000021 Rmu_sc0000654.1_g000029 Rmu_sc0000654.1_g000032 Rmu_sc0000654.1_g000041 Rmu_sc0000654.1_g000045 Rmu_sc0000772.1_g000002 Rmu_sc0000772.1_g000041 Rmu_sc0000808.1_g000040 Rmu_sc0000830.1_g000062 Rmu_sc0000830.1_g000065 Rmu_sc0000830.1_g000072 Rmu_sc0000830.1_g000073 Rmu_sc0000935.1_g000020 Rmu_sc0000935.1_g000024 Rmu_sc0000935.1_g000026 Rmu_sc0000935.1_g000027 Rmu_sc0000935.1_g000031 Rmu_sc0000935.1_g000033 Rmu_sc0000962.1_g000033 Rmu_sc0000962.1_g000036 Rmu_sc0000962.1_g000063 Rmu_sc0000962.1_g000064 Rmu_sc0000962.1_g000065 Rmu_sc0001029.1_g000007 Rmu_sc0001063.1_g000014 Rmu_sc0001149.1_g000010 Rmu_sc0001149.1_g000011 Rmu_sc0001358.1_g000009 Rmu_sc0001448.1_g000003 Rmu_sc0001448.1_g000004 Rmu_sc0001729.1_g000005 Rmu_sc0001729.1_g000007 Rmu_sc0001729.1_g000020 Rmu_sc0001729.1_g000023 Rmu_sc0001793.1_g000015 Rmu_sc0002494.1_g000018 Rmu_sc0002494.1_g000019 Rmu_sc0002604.1_g000022 Rmu_sc0002922.1_g000011 Rmu_sc0003008.1_g000009 Rmu_sc0003221.1_g000061 Rmu_sc0003221.1_g000062 Rmu_sc0003459.1_g000014 Rmu_sc0003480.1_g000015 Rmu_sc0003541.1_g000016 Rmu_sc0003541.1_g000020 Rmu_sc0004035.1_g000001 Rmu_sc0004035.1_g000005 Rmu_sc0004035.1_g000011 Rmu_sc0004142.1_g000004 Rmu_sc0004142.1_g000010 Rmu_sc0004353.1_g000008 Rmu_sc0004616.1_g000009 Rmu_sc0004616.1_g000010 Rmu_sc0005231.1_g000004 Rmu_sc0006380.1_g000025 Rmu_sc0006492.1_g000010 Rmu_sc0006895.1_g000001 Rmu_sc0006895.1_g000002 Rmu_sc0006895.1_g000005 Rmu_sc0007034.1_g000004 Rmu_sc0007104.1_g000006 Rmu_sc0008990.1_g000003 Rmu_sc0008990.1_g000004 Rmu_sc0009106.1_g000003 Rmu_sc0009516.1_g000002 Rmu_sc0009516.1_g000003 Rmu_sc0009516.1_g000004 Rmu_sc0009516.1_g000005 Rmu_sc0009645.1_g000001 Rmu_sc0010274.1_g000001 Rmu_sc0010274.1_g000002 Rmu_sc0010419.1_g000003 Rmu_sc0010917.1_g000017 Rmu_sc0011213.1_g000001 Rmu_sc0011228.1_g000007 Rmu_sc0011538.1_g000011 Rmu_sc0011538.1_g000014 Rmu_sc0011538.1_g000015 Rmu_sc0012211.1_g000006 Rmu_sc0012351.1_g000003 Rmu_sc0012351.1_g000005 Rmu_sc0012915.1_g000002 Rmu_sc0013088.1_g000001 Rmu_sc0013459.1_g000001 Rmu_sc0013765.1_g000004 Rmu_sc0013765.1_g000005 Rmu_sc0014003.1_g000012 Rmu_sc0014003.1_g000014 Rmu_sc0014698.1_g000001 Rmu_sc0015740.1_g000001 Rmu_sc0016429.1_g000003 Rmu_sc0018885.1_g000001 Rmu_sc0020345.1_g000001 Rmu_sc0027791.1_g000001 Rmu_sc0037325.1_g000001 Rmu_ssc0000010.1_g000024 Rmu_ssc0000010.1_g000025 Rmu_ssc0000083.1_g000021 Rmu_ssc0000340.1_g000002 Rmu_ssc0000386.1_g000002 Rmu_ssc0000386.1_g000024 Rmu_ssc0000386.1_g000025 Rmu_ssc0000386.1_g000034 Rmu_ssc0000386.1_g000037 Rmu_ssc0000477.1_g000001
rosa_roxburghii Rroxscaffold_161G00448010 Rroxscaffold_164G00436080 Rroxscaffold_1G00024500 Rroxscaffold_2G00124290 Rroxscaffold_3G00222940 Rroxscaffold_3G00227440 Rroxscaffold_4G00304810 Rroxscaffold_4G00330180 Rroxscaffold_4G00330200 Rroxscaffold_5G00356620 Rroxscaffold_5G00358170 Rroxscaffold_5G00360880 Rroxscaffold_5G00361220 Rroxscaffold_5G00361950 Rroxscaffold_5G00361960 Rroxscaffold_5G00361990 Rroxscaffold_5G00362370 Rroxscaffold_5G00364540 Rroxscaffold_5G00364550 Rroxscaffold_5G00364580 Rroxscaffold_5G00364600 Rroxscaffold_6G00393290 Rroxscaffold_6G00412680 Rroxscaffold_6G00412790 Rroxscaffold_6G00413470 Rroxscaffold_6G00413720 Rroxscaffold_6G00416070 Rroxscaffold_7G00205400
rosa_rugosa Rorug01G0017300 Rorug01G0017400 Rorug01G0018000 Rorug01G0018100 Rorug01G0211500 Rorug02G0638200 Rorug03G0070000 Rorug03G0071200 Rorug03G0081000 Rorug03G0086500 Rorug03G0089300 Rorug03G0095300 Rorug03G0096000 Rorug03G0096000 Rorug04G0055000 Rorug04G0078300 Rorug04G0104100.1 Rorug04G0113800 Rorug04G0126700 Rorug04G0128000 Rorug04G0145900 Rorug04G0148700 Rorug04G0149100 Rorug04G0149100 Rorug04G0149200 Rorug04G0149300 Rorug04G0154900 Rorug04G0180400 Rorug04G0180500 Rorug04G0180700 Rorug04G0180800 Rorug04G0401500 Rorug04G0402100 Rorug05G0288600 Rorug05G0334100 Rorug07G0176400
rosa_samantha Rh1DG043200 Rh1DG043500 Rh1DG043900 Rh1DG222800 Rh3CG039900 Rh3CG156200 Rh3CG328500 Rh3CG328800 Rh3DG165000 Rh4AG208400 Rh4BG205600 Rh4BG213900 Rh4BG243900 Rh4CG198800 Rh4DG168600 Rh4DG180100 Rh4DG180300 Rh4DG180600 Rh4DG181200 Rh4DG181600 Rh4DG181700 Rh4DG183700 Rh4DG184000 Rh4DG184400 Rh4DG184700 Rh4DG206100 Rh4DG206200 Rh4DG206300 Rh4DG215600 Rh4DG238700 Rh4DG238900 Rh5DG390300
rosa_wichuraiana Rw0G005050 Rw0G009260 Rw0G009280 Rw0G015600 Rw0G023570 Rw1G002140 Rw1G002170 Rw1G002210 Rw1G002240 Rw1G019500 Rw2G015490 Rw3G003020 Rw3G010900 Rw3G012030 Rw3G012790 Rw3G013050 Rw3G013540 Rw3G013640 Rw3G013650 Rw3G026050 Rw3G026070 Rw4G015740 Rw4G015790 Rw4G015910 Rw4G015930 Rw4G015950 Rw4G017900 Rw4G017930 Rw4G018440 Rw4G018450 Rw4G018530 Rw4G020720 Rw4G020760 Rw5G019250 Rw5G034370 Rw7G018700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 31
Acc36I ACCTGC 4 cut(s) 23, 31, 1089, 1417
AccII CGCG 4 cut(s) 123, 269, 486, 1235
AciI CCGC 7 cut(s) 121, 123, 438, 489, 492, 1233, 1235
AclWI GGATC 4 cut(s) 464, 1025, 1199, 1591
AcsI RAATTY 2 cut(s) 574, 1043
AcuI CTGAAG 2 cut(s) 747, 822
AfaI GTAC 3 cut(s) 19, 188, 1566
AfiI CCNNNNNNNGG 3 cut(s) 124, 145, 241
AgeI ACCGGT 1 cut(s) 1511
AgsI TTSAA 7 cut(s) 298, 317, 382, 938, 1160, 1297, 1548
AhdI GACNNNNNGTC 1 cut(s) 1196
AhlI ACTAGT 1 cut(s) 889
AjiI CACGTC 1 cut(s) 322
AjnI CCWGG 2 cut(s) 649, 956
AluBI AGCT 5 cut(s) 427, 445, 1165, 1331, 1338
AluI AGCT 5 cut(s) 427, 445, 1165, 1331, 1338
Alw21I GWGCWC 1 cut(s) 429
Alw26I GTCTC 3 cut(s) 254, 552, 1140
AlwI GGATC 4 cut(s) 464, 1025, 1199, 1591
AlwNI CAGNNNCTG 1 cut(s) 800
Ama87I CYCGRG 2 cut(s) 515, 569
AoxI GGCC 4 cut(s) 135, 333, 469, 722
ApeKI GCWGC 1 cut(s) 1308
ApoI RAATTY 2 cut(s) 574, 1043
ArsI GACNNNNNNTTYG 4 cut(s) 1139, 1171, 1430, 1462
AsiGI ACCGGT 1 cut(s) 1511
AspLEI GCGC 3 cut(s) 486, 488, 746
AspS9I GGNCC 4 cut(s) 136, 244, 722, 1412
AsuHPI GGTGA 4 cut(s) 76, 220, 289, 367
AvaI CYCGRG 2 cut(s) 515, 569
AvaII GGWCC 2 cut(s) 244, 1412
BanII GRGCYC 1 cut(s) 429
BarI GAAGNNNNNNTAC 2 cut(s) 870, 902
BauI CACGAG 1 cut(s) 536
BbsI GAAGAC 3 cut(s) 305, 324, 1169
Bbv12I GWGCWC 1 cut(s) 429
BbvI GCAGC 1 cut(s) 1320
BccI CCATC 6 cut(s) 149, 158, 1120, 1166, 1238, 1463
BciT130I CCWGG 2 cut(s) 651, 958
BciVI GTATCC 2 cut(s) 847, 954
BclI TGATCA 2 cut(s) 66, 949
BcoDI GTCTC 3 cut(s) 254, 552, 1140
BcuI ACTAGT 1 cut(s) 889
BfaI CTAG 1 cut(s) 890
BfuAI ACCTGC 4 cut(s) 23, 31, 1089, 1417
BfuI GTATCC 2 cut(s) 847, 954
BisI GCNGC 5 cut(s) 439, 489, 492, 1233, 1309
BlsI GCNGC 5 cut(s) 440, 490, 493, 1234, 1310
Bme1390I CCNGG 2 cut(s) 651, 958
Bme18I GGWCC 2 cut(s) 244, 1412
BmeRI GACNNNNNGTC 1 cut(s) 1196
BmeT110I CYCGRG 2 cut(s) 515, 569
BmgBI CACGTC 1 cut(s) 322
BmgT120I GGNCC 4 cut(s) 136, 244, 722, 1412
BmiI GGNNCC 2 cut(s) 138, 696
BmrFI CCNGG 2 cut(s) 651, 958
BmsI GCATC 3 cut(s) 227, 394, 1219
BpiI GAAGAC 3 cut(s) 305, 324, 1169
BplI GAGNNNNNCTC 2 cut(s) 741, 773
BpmI CTGGAG 1 cut(s) 681
Bpu10I CCTNAGC 1 cut(s) 1166
BpuEI CTTGAG 2 cut(s) 1166, 1311
BsaI GGTCTC 2 cut(s) 254, 552
BsaJI CCNNGG 3 cut(s) 121, 956, 1233
BsaWI WCCGGW 2 cut(s) 254, 1511
Bsc4I CCNNNNNNNGG 3 cut(s) 124, 145, 241
Bse118I RCCGGY 2 cut(s) 246, 1511
Bse1I ACTGG 1 cut(s) 1526
Bse3DI GCAATG 3 cut(s) 1391, 1506, 1560
BseBI CCWGG 2 cut(s) 651, 958
BseDI CCNNGG 3 cut(s) 121, 956, 1233
BseGI GGATG 7 cut(s) 174, 409, 952, 1177, 1243, 1405, 1474
BseLI CCNNNNNNNGG 3 cut(s) 124, 145, 241
BseMI GCAATG 3 cut(s) 1391, 1506, 1560
BseMII CTCAG 2 cut(s) 864, 1075
BseNI ACTGG 1 cut(s) 1526
BsePI GCGCGC 1 cut(s) 484
BseRI GAGGAG 4 cut(s) 340, 910, 1283, 1502
BseXI GCAGC 1 cut(s) 1320
Bsh1236I CGCG 4 cut(s) 123, 269, 486, 1235
BshFI GGCC 4 cut(s) 137, 335, 471, 724
BshTI ACCGGT 1 cut(s) 1511
BsiHKAI GWGCWC 1 cut(s) 429
BsiHKCI CYCGRG 2 cut(s) 515, 569
BsiSI CCGG 3 cut(s) 247, 255, 1512
BslI CCNNNNNNNGG 3 cut(s) 124, 145, 241
BsmAI GTCTC 3 cut(s) 254, 552, 1140
BsnI GGCC 4 cut(s) 137, 335, 471, 724
Bso31I GGTCTC 2 cut(s) 254, 552
BsoBI CYCGRG 2 cut(s) 515, 569
Bsp1286I GDGCHC 1 cut(s) 429
Bsp1407I TGTACA 1 cut(s) 17
Bsp143I GATC 8 cut(s) 58, 66, 339, 456, 949, 1017, 1204, 1596
BspACI CCGC 7 cut(s) 121, 123, 438, 489, 492, 1233, 1235
BspANI GGCC 4 cut(s) 137, 335, 471, 724
BspCNI CTCAG 2 cut(s) 865, 1074
BspFNI CGCG 4 cut(s) 123, 269, 486, 1235
BspHI TCATGA 2 cut(s) 91, 342
BspLI GGNNCC 2 cut(s) 138, 696
BspMI ACCTGC 4 cut(s) 23, 31, 1089, 1417
BspPI GGATC 4 cut(s) 464, 1025, 1199, 1591
BspQI GCTCTTC 1 cut(s) 1155
BspTNI GGTCTC 2 cut(s) 254, 552
BsrDI GCAATG 3 cut(s) 1391, 1506, 1560
BsrFI RCCGGY 2 cut(s) 246, 1511
BsrGI TGTACA 1 cut(s) 17
BsrI ACTGG 1 cut(s) 1526
BssAI RCCGGY 2 cut(s) 246, 1511
BssECI CCNNGG 3 cut(s) 121, 956, 1233
BssHII GCGCGC 1 cut(s) 484
BssMI GATC 8 cut(s) 58, 66, 339, 456, 949, 1017, 1204, 1596
BssSI CACGAG 1 cut(s) 536
Bst2BI CACGAG 1 cut(s) 536
Bst2UI CCWGG 2 cut(s) 651, 958
Bst4CI ACNGT 3 cut(s) 609, 934, 1265
Bst6I CTCTTC 1 cut(s) 1155
BstAPI GCANNNNNTGC 1 cut(s) 531
BstAUI TGTACA 1 cut(s) 17
BstC8I GCNNGC 3 cut(s) 271, 443, 486
BstDEI CTNAG 4 cut(s) 873, 1061, 1166, 1568
BstDSI CCRYGG 2 cut(s) 121, 1233
BstF5I GGATG 7 cut(s) 174, 409, 952, 1177, 1243, 1405, 1474
BstFNI CGCG 4 cut(s) 123, 269, 486, 1235
BstHHI GCGC 3 cut(s) 486, 488, 746
BstKTI GATC 8 cut(s) 61, 69, 342, 459, 952, 1020, 1207, 1599
BstMAI GTCTC 3 cut(s) 254, 552, 1140
BstMBI GATC 8 cut(s) 58, 66, 339, 456, 949, 1017, 1204, 1596
BstMWI GCNNNNNNNGC 1 cut(s) 531
BstNI CCWGG 2 cut(s) 651, 958
BstSCI CCNGG 2 cut(s) 649, 956
BstUI CGCG 4 cut(s) 123, 269, 486, 1235
BstV1I GCAGC 1 cut(s) 1320
BstV2I GAAGAC 3 cut(s) 305, 324, 1169
BstXI CCANNNNNNTGG 1 cut(s) 542
BsuI GTATCC 2 cut(s) 847, 954
BsuRI GGCC 4 cut(s) 137, 335, 471, 724
BtgI CCRYGG 2 cut(s) 121, 1233
BtrI CACGTC 1 cut(s) 322
BtsCI GGATG 7 cut(s) 174, 409, 952, 1177, 1243, 1405, 1474
BtsIMutI CAGTG 2 cut(s) 1200, 1256
BveI ACCTGC 4 cut(s) 23, 31, 1089, 1417
Cac8I GCNNGC 3 cut(s) 271, 443, 486
CaiI CAGNNNCTG 1 cut(s) 800
CciI TCATGA 2 cut(s) 91, 342
CfoI GCGC 3 cut(s) 486, 488, 746
Cfr10I RCCGGY 2 cut(s) 246, 1511
Cfr13I GGNCC 4 cut(s) 136, 244, 722, 1412
Cfr42I CCGCGG 2 cut(s) 124, 1236
CsiI ACCWGGT 1 cut(s) 649
Csp6I GTAC 3 cut(s) 18, 187, 1565
CspAI ACCGGT 1 cut(s) 1511
CviAII CATG 6 cut(s) 92, 343, 421, 542, 691, 858
CviQI GTAC 3 cut(s) 18, 187, 1565
DdeI CTNAG 4 cut(s) 873, 1061, 1166, 1568
DpnI GATC 8 cut(s) 60, 68, 341, 458, 951, 1019, 1206, 1598
DpnII GATC 8 cut(s) 58, 66, 339, 456, 949, 1017, 1204, 1596
DraI TTTAAA 1 cut(s) 1495
DriI GACNNNNNGTC 1 cut(s) 1196
Eam1104I CTCTTC 1 cut(s) 1155
Eam1105I GACNNNNNGTC 1 cut(s) 1196
EarI CTCTTC 1 cut(s) 1155
Ecl136II GAGCTC 1 cut(s) 427
Eco24I GRGCYC 1 cut(s) 429
Eco31I GGTCTC 2 cut(s) 254, 552
Eco32I GATATC 1 cut(s) 282
Eco47I GGWCC 2 cut(s) 244, 1412
Eco53kI GAGCTC 1 cut(s) 427
Eco57I CTGAAG 2 cut(s) 747, 822
Eco88I CYCGRG 2 cut(s) 515, 569
EcoICRI GAGCTC 1 cut(s) 427
EcoRII CCWGG 2 cut(s) 649, 956
EcoRV GATATC 1 cut(s) 282
EcoT38I GRGCYC 1 cut(s) 429
FaeI CATG 6 cut(s) 95, 346, 424, 545, 694, 861
FalI AAGNNNNNCTT 2 cut(s) 930, 962
FatI CATG 6 cut(s) 91, 342, 420, 541, 690, 857
FauI CCCGC 1 cut(s) 116
FbaI TGATCA 2 cut(s) 66, 949
Fnu4HI GCNGC 5 cut(s) 439, 489, 492, 1233, 1309
FokI GGATG 7 cut(s) 161, 416, 939, 1184, 1250, 1412, 1481
FriOI GRGCYC 1 cut(s) 429
Fsp4HI GCNGC 5 cut(s) 439, 489, 492, 1233, 1309
FspBI CTAG 1 cut(s) 890
GlaI GCGC 3 cut(s) 485, 487, 745
GluI GCNGC 5 cut(s) 439, 489, 492, 1233, 1309
GsuI CTGGAG 1 cut(s) 681
HaeIII GGCC 4 cut(s) 137, 335, 471, 724
HapII CCGG 3 cut(s) 247, 255, 1512
HhaI GCGC 3 cut(s) 486, 488, 746
Hin1II CATG 6 cut(s) 95, 346, 424, 545, 694, 861
Hin6I GCGC 3 cut(s) 484, 486, 744
HinP1I GCGC 3 cut(s) 484, 486, 744
HindIII AAGCTT 1 cut(s) 1329
HinfI GANTC 7 cut(s) 95, 225, 550, 660, 927, 1104, 1476
HpaII CCGG 3 cut(s) 247, 255, 1512
HphI GGTGA 4 cut(s) 76, 220, 289, 367
Hpy166II GTNNAC 7 cut(s) 20, 38, 244, 1029, 1291, 1456, 1606
Hpy188I TCNGA 7 cut(s) 657, 849, 874, 984, 1010, 1064, 1109
Hpy188III TCNNGA 8 cut(s) 92, 343, 515, 557, 698, 1183, 1208, 1548
Hpy8I GTNNAC 7 cut(s) 20, 38, 244, 1029, 1291, 1456, 1606
Hpy99I CGWCG 2 cut(s) 115, 1316
HpyAV CCTTC 5 cut(s) 274, 388, 800, 844, 1094
HpyCH4III ACNGT 3 cut(s) 609, 934, 1265
HpyCH4IV ACGT 3 cut(s) 321, 498, 712
HpyCH4V TGCA 8 cut(s) 273, 407, 525, 587, 605, 815, 971, 1216
HpyF10VI GCNNNNNNNGC 1 cut(s) 531
HpyF3I CTNAG 4 cut(s) 873, 1061, 1166, 1568
HpySE526I ACGT 3 cut(s) 321, 498, 712
Hsp92II CATG 6 cut(s) 95, 346, 424, 545, 694, 861
HspAI GCGC 3 cut(s) 484, 486, 744
Ksp22I TGATCA 2 cut(s) 66, 949
KspI CCGCGG 2 cut(s) 124, 1236
Kzo9I GATC 8 cut(s) 58, 66, 339, 456, 949, 1017, 1204, 1596
LguI GCTCTTC 1 cut(s) 1155
LmnI GCTCC 3 cut(s) 424, 700, 741
Lsp1109I GCAGC 1 cut(s) 1320
LweI GCATC 3 cut(s) 227, 394, 1219
MabI ACCWGGT 1 cut(s) 649
MaeI CTAG 1 cut(s) 890
MaeII ACGT 3 cut(s) 321, 498, 712
MaeIII GTNAC 5 cut(s) 373, 460, 499, 833, 1198
MalI GATC 8 cut(s) 60, 68, 341, 458, 951, 1019, 1206, 1598
MboI GATC 8 cut(s) 58, 66, 339, 456, 949, 1017, 1204, 1596
MboII GAAGA 7 cut(s) 310, 329, 815, 950, 1063, 1169, 1172
MfeI CAATTG 1 cut(s) 618
MhlI GDGCHC 1 cut(s) 429
MluCI AATT 9 cut(s) 510, 574, 618, 640, 669, 715, 884, 1043, 1224
MlyI GAGTC 2 cut(s) 89, 921
MmeI TCCRAC 1 cut(s) 655
MseI TTAA 9 cut(s) 611, 707, 1013, 1047, 1223, 1382, 1494, 1560, 1583
MslI CAYNNNNRTG 3 cut(s) 146, 540, 1034
MspA1I CMGCKG 2 cut(s) 123, 1235
MspI CCGG 3 cut(s) 247, 255, 1512
MspR9I CCNGG 2 cut(s) 651, 958
MunI CAATTG 1 cut(s) 618
MvaI CCWGG 2 cut(s) 651, 958
MvnI CGCG 4 cut(s) 123, 269, 486, 1235
MwoI GCNNNNNNNGC 1 cut(s) 531
NdeII GATC 8 cut(s) 58, 66, 339, 456, 949, 1017, 1204, 1596
NlaIII CATG 6 cut(s) 95, 346, 424, 545, 694, 861
NlaIV GGNNCC 2 cut(s) 138, 696
NmeAIII GCCGAG 2 cut(s) 113, 361
NmuCI GTSAC 3 cut(s) 373, 460, 1198
PaeR7I CTCGAG 1 cut(s) 515
PagI TCATGA 2 cut(s) 91, 342
PaqCI CACCTGC 1 cut(s) 31
PauI GCGCGC 1 cut(s) 484
PciSI GCTCTTC 1 cut(s) 1155
PcsI WCGNNNNNNNCGW 1 cut(s) 456
PfeI GAWTC 5 cut(s) 225, 550, 660, 1104, 1476
PinAI ACCGGT 1 cut(s) 1511
PkrI GCNGC 5 cut(s) 440, 490, 493, 1234, 1310
PleI GAGTC 2 cut(s) 89, 921
PpsI GAGTC 2 cut(s) 89, 921
Psp124BI GAGCTC 1 cut(s) 429
Psp6I CCWGG 2 cut(s) 649, 956
PspGI CCWGG 2 cut(s) 649, 956
PspN4I GGNNCC 2 cut(s) 138, 696
PspPI GGNCC 4 cut(s) 136, 244, 722, 1412
PstNI CAGNNNCTG 1 cut(s) 800
PteI GCGCGC 1 cut(s) 484
RsaI GTAC 3 cut(s) 19, 188, 1566
RsaNI GTAC 3 cut(s) 18, 187, 1565
RseI CAYNNNNRTG 3 cut(s) 146, 540, 1034
SacI GAGCTC 1 cut(s) 429
SacII CCGCGG 2 cut(s) 124, 1236
SapI GCTCTTC 1 cut(s) 1155
SaqAI TTAA 9 cut(s) 611, 707, 1013, 1047, 1223, 1382, 1494, 1560, 1583
SatI GCNGC 5 cut(s) 439, 489, 492, 1233, 1309
Sau3AI GATC 8 cut(s) 58, 66, 339, 456, 949, 1017, 1204, 1596
Sau96I GGNCC 4 cut(s) 136, 244, 722, 1412
SchI GAGTC 2 cut(s) 89, 921
ScrFI CCNGG 2 cut(s) 651, 958
SduI GDGCHC 1 cut(s) 429
SexAI ACCWGGT 1 cut(s) 649
SfaNI GCATC 3 cut(s) 227, 394, 1219
Sfr274I CTCGAG 1 cut(s) 515
Sfr303I CCGCGG 2 cut(s) 124, 1236
SgrBI CCGCGG 2 cut(s) 124, 1236
SinI GGWCC 2 cut(s) 244, 1412
SlaI CTCGAG 1 cut(s) 515
SmiMI CAYNNNNRTG 3 cut(s) 146, 540, 1034
SmlI CTYRAG 3 cut(s) 515, 1181, 1326
SmoI CTYRAG 3 cut(s) 515, 1181, 1326
SpeI ACTAGT 1 cut(s) 889
Sse9I AATT 9 cut(s) 510, 574, 618, 640, 669, 715, 884, 1043, 1224
SsiI CCGC 7 cut(s) 121, 123, 438, 489, 492, 1233, 1235
SspI AATATT 1 cut(s) 1544
SspMI CTAG 1 cut(s) 890
SstI GAGCTC 1 cut(s) 429
StyD4I CCNGG 2 cut(s) 649, 956
TaaI ACNGT 3 cut(s) 609, 934, 1265
TaiI ACGT 3 cut(s) 324, 501, 715
TaqI TCGA 6 cut(s) 450, 516, 556, 1242, 1449, 1595
TaqII GACCGA 1 cut(s) 176
TasI AATT 9 cut(s) 510, 574, 618, 640, 669, 715, 884, 1043, 1224
TatI WGTACW 3 cut(s) 17, 186, 1564
TauI GCSGC 4 cut(s) 441, 491, 494, 1235
TfiI GAWTC 5 cut(s) 225, 550, 660, 1104, 1476
Tru1I TTAA 9 cut(s) 611, 707, 1013, 1047, 1223, 1382, 1494, 1560, 1583
Tru9I TTAA 9 cut(s) 611, 707, 1013, 1047, 1223, 1382, 1494, 1560, 1583
TscAI CASTG 2 cut(s) 1207, 1263
TseFI GTSAC 3 cut(s) 373, 460, 1198
TseI GCWGC 1 cut(s) 1308
Tsp45I GTSAC 3 cut(s) 373, 460, 1198
TspDTI ATGAA 6 cut(s) 80, 542, 660, 1052, 1104, 1520
TspRI CASTG 2 cut(s) 1207, 1263
VpaK11BI GGWCC 2 cut(s) 244, 1412
XapI RAATTY 2 cut(s) 574, 1043
XcmI CCANNNNNNNNNTGG 1 cut(s) 148
XhoI CTCGAG 1 cut(s) 515
XspI CTAG 1 cut(s) 890
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.