RchiOBHm_Chr4g0414521

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
39048667 .. 39051234
2568 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38491

Sequence Viewer

Length: 2280 bp
ATGTTCCCGGAAGATTTCACAATTGAAAGAGAACAGTTGATCCAACTATGGATGGCTCAGGGATTTCTCCATCCTTATCATCCTGGTCAGCGTATGCAACAAATGGAGGATATAGGTAATGAGTATTTCAATATTTTATGTCAAAACTCCTTATTCCAAGATGTTACCAAGGATGACGATGGCATTATAAAAAACTGCAAAATGCATGATCTTGTGCACAATCTTGCAAAAGAAGTATCCAAATGTGAGAGTTCGATGCAGGACTTGAATAATGTGATAGAGGATCACGATAAACCTGAGATTCGACATGTTTCACGAGTTCCTACATCAACACTAGAAAGAATGTCAGAGTCAAATATTGCGAGGTTGCGCTCTCTATTTGTGAGTGATGAAGTCCCCAGTACCATTTTTCTAAAGTTGAGAGCTTTACGTGTCTTAGATTTAGAAGCGTCGGGTATAGAGGAGTTGCCGAATTCAATTGGCAAGTTGAAGCATTTGAGGTATCTAGACATTTCCTACACAAGAATCGAGGCACTCCCAAAATCTATTGGCAAGCTCTATAACCTTCAAACACTGAGAATGCATGCTACAGATCTCGAAAAGTTGCCACAGGAAATGAAAAACTTGATCAACTTGAGACATGTTTATTTTGATAAGGAAATTGAGATTCCAGCTGGGATATTGGGGCAATTGTGCAATCTTAGAACATTACCTCACTTCAGTGTGGGCAAGGAGATGGGACCTGGAATTGGAGAGTTAGGTGGCTTGAAGCAATTGAAAGGCCGACTAACTATTTTGAATCTAGAACATGTGAAGAGTGAAGAAGAAGCGAAGAAGGCAAAATTGGAGGAGAAGAGAGATGTATGCGAGCTAAAATTTAAATGGACAAGAGACGACAACAATGAGGAAGGGTCAGAGAGCAGCACAAGCAGCAGCATTAATGATGAACATGAACATGTACTAGAAGGCCTCCGGCCACATTCTAATTTGCAAAGGCTGCAGATTAAAGGATTCAGGGGTGCCAGATCTCCGTCATGGGTGATGTGTCTCAACAACTTGAAGAAGATTATATTATCCCACTGCCCCAATTGTGAAGGAGTTCCAGCACTGGGTCAACTTCCTAATCTTAGACATGTCGAGATTTGCAGGATGGATAACCTAAAACATGTGGGAGCTGATGGTCTAGACTCGTTCCCTCTTGTTGAGCATATGAGTATAATTAGATGTCCCAGCCTAGAGTCGATTCGGATCGCACAGGGCAGTGCTCCTCTCCGTGAATTGATCATAGAGGATTGTAATGGATTATCAAGCCTACTGATTGGGCCCTATTGCTGCACCTCTATTCAAAAATTGGTTATTTGGGGCTGTCCTAATCTAACATCACTTCCAACCACACAGGGGGGCATTGCATCTCTAGAGTTGGTGATTTTTAAATGTGATCGATTATCAAGCCTACCAAGTGGTCTCCTCCTACGCTGCACCTCTCTGACGCTTCGTTATTGTCCTAATCTAACATCAATATTTCCCATCACACAGGATATGCCATCATCTCTCCGTGAATTGACGATTACAAATTGTAAGGGATTATCAAGTCTACCACTAAGCGGGCTCCTCTCTCTTGAGAAATTGTGGATATCAAGTCTAGCACCATCCATTTCAGTCCCATCAGGCGTCCTCCGCAGTTTGATTGTTAGTGATTGTGAGGAATTGACATCCATTTCAATGACGTCGTCAAGTCTTCTACTTGAGGAGTTGCGTATAGGGCGTTGCAATAATCTACAATCTATTGTTCCAGCAGATTTACAGGGCTTCCCATGTCTCCGTGAGTTGATAATAGGGCATTGTGGGAAATTAAAATATCTGCCGACAGGGTTTCACTGCCTCACCCGATTGAAGAAACTGCTTATTGGCCCGTTCTGGGAGGAGCTCCATTCCTTCCCTGAGTTTCAGCTTCCACCACATTCACAACTTGAAGAGTTAACCTTGAGAGGGTGGCCTAAGCTCAAGTCTCTGCCCCAGCAAATTCAGCACTTGACTTGTCTAAAAACTTTGTACATAGAGAAGTTCAGCGGAGTGGAGGCTCTTCCTGAGTGGTTGGGAAATCTCACATCTCTTGAGATTCTGTATATTTGGAATTGTGAGAATCTCAAGTATCTACCTACACTCCAAGCTAGGCAACGCCTCACCAAATTGAAGGAGCTCGATGTTACGGGATGTCCCCTCCTCAACACAGGCCCTGAATGGCCCAAGATTGCTCATATCCCAACTATCTTAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

759

Amino Acids

85.64

Weight (kDa)

6.41

Isoelectric Point (pI)

52.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_DRP PF23559 1 - 76 8e-26 Disease resistance protein Winged helix domain
LRR_14 PF23598 123 - 409 3.6e-34 Leucine-rich repeat region
LRR_8 PF13855 142 - 199 4e-06 Leucine rich repeat
LRR_R13L1-DRL21 PF25019 250 - 384 1.6e-37 R13L1/DRL21 LRRs
LRR_RPS2 PF23247 473 - 591 5.3e-07 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 583 - 739 2.7e-07 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_14 PF23598 657 - 736 8.9e-08 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 674 - 738 2.7e-07 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000029)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13530 FvH4_4g18270 FvH4_6g12200 FvH4_6g12460 FvH4_6g12461 FvH4_6g13450 FvH4_6g15090 FvH4_6g15220 FvH4_6g15230 FvH4_6g15250 FvH4_6g15251 FvH4_6g15340 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47980 FvH4_6g47980 FvH4_6g47980 FvH4_6g48170 FvH4_6g48310 FvH4_6g48310 FvH4_6g48850 FvH4_6g48881 FvH4_7g11830
malus_domestica MD02G1059900.v1.1 MD02G1069600.v1.1 MD02G1069700.v1.1 MD02G1070100.v1.1 MD02G1070200.v1.1 MD02G1070300.v1.1 MD02G1070800.v1.1 MD02G1070900.v1.1 MD02G1071200.v1.1 MD02G1071400.v1.1 MD02G1071900.v1.1 MD02G1075200.v1.1 MD03G1048000.v1.1 MD03G1049100.v1.1 MD03G1049200.v1.1 MD03G1052500.v1.1 MD03G1054100.v1.1 MD03G1054300.v1.1 MD03G1054400.v1.1 MD04G1113400.v1.1 MD04G1211100.v1.1 MD04G1211200.v1.1 MD05G1174900.v1.1 MD05G1175000.v1.1 MD05G1175900.v1.1 MD05G1243400.v1.1 MD07G1031500.v1.1 MD07G1031600.v1.1 MD07G1032500.v1.1 MD11G1046800.v1.1 MD11G1046900.v1.1 MD11G1047000.v1.1 MD11G1050400.v1.1 MD11G1050600.v1.1 MD11G1050800.v1.1 MD11G1051100.v1.1 MD11G1051600.v1.1 MD11G1051700.v1.1 MD11G1054600.v1.1 MD11G1055600.v1.1 MD11G1055700.v1.1 MD11G1055800.v1.1 MD11G1056000.v1.1 MD12G1126600.v1.1 MD12G1126700.v1.1 MD12G1126800.v1.1 MD12G1127300.v1.1 MD12G1127600.v1.1 MD12G1127900.v1.1 MD12G1128100.v1.1 MD12G1128300.v1.1 MD15G1261500.v1.1
prunus_persica Prupe.1G010700_v2.0.a1 Prupe.1G010800_v2.0.a1 Prupe.1G011000_v2.0.a1 Prupe.1G159600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163700_v2.0.a1 Prupe.1G163700_v2.0.a1 Prupe.1G163800_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G235500_v2.0.a1 Prupe.2G067400_v2.0.a1 Prupe.2G067500_v2.0.a1 Prupe.2G111700_v2.0.a1 Prupe.2G111800_v2.0.a1 Prupe.3G012000_v2.0.a1 Prupe.6G243400_v2.0.a1 Prupe.6G243500_v2.0.a1 Prupe.6G243600_v2.0.a1 Prupe.6G243700_v2.0.a1 Prupe.6G243800_v2.0.a1 Prupe.6G243900_v2.0.a1
pyrus_communis pycom02g04860 pycom02g04880 pycom02g04890 pycom02g05510 pycom02g05520 pycom02g05600 pycom02g05930 pycom02g06000 pycom02g06010 pycom03g03800 pycom03g03860 pycom03g03880 pycom03g03890 pycom03g03910 pycom03g03920 pycom03g04200 pycom03g04290 pycom03g04300 pycom03g04310 pycom03g04320 pycom03g09260 pycom04g10150 pycom04g10160 pycom04g10170 pycom05g16180 pycom05g16190 pycom05g16240 pycom05g21980 pycom05g21990 pycom07g02280 pycom11g03800 pycom11g03810 pycom11g04080 pycom11g04140 pycom11g04150 pycom11g04160 pycom11g04570 pycom11g04580 pycom11g04590 pycom11g04610 pycom12g12470 pycom12g12490 pycom13g22050
rosa_chinensis RchiOBHm_Chr1g0317761 RchiOBHm_Chr1g0317821 RchiOBHm_Chr1g0317831 RchiOBHm_Chr1g0317871 RchiOBHm_Chr1g0350501 RchiOBHm_Chr2g0107631 RchiOBHm_Chr3g0452091 RchiOBHm_Chr3g0464001 RchiOBHm_Chr3g0464281 RchiOBHm_Chr3g0466331 RchiOBHm_Chr3g0467341 RchiOBHm_Chr3g0467381 RchiOBHm_Chr3g0467731 RchiOBHm_Chr3g0468291 RchiOBHm_Chr3g0468321 RchiOBHm_Chr3g0468341 RchiOBHm_Chr3g0468391 RchiOBHm_Chr3g0468411 RchiOBHm_Chr3g0468571 RchiOBHm_Chr3g0468591 RchiOBHm_Chr3g0490721 RchiOBHm_Chr3g0490751 RchiOBHm_Chr3g0490761 RchiOBHm_Chr3g0490771 RchiOBHm_Chr3g0490951 RchiOBHm_Chr3g0491001 RchiOBHm_Chr3g0491011 RchiOBHm_Chr4g0412461 RchiOBHm_Chr4g0414161 RchiOBHm_Chr4g0414181 RchiOBHm_Chr4g0414191 RchiOBHm_Chr4g0414281 RchiOBHm_Chr4g0414441 RchiOBHm_Chr4g0414521 RchiOBHm_Chr4g0414531 RchiOBHm_Chr4g0417011 RchiOBHm_Chr4g0417021 RchiOBHm_Chr4g0417041 RchiOBHm_Chr4g0417071 RchiOBHm_Chr4g0417101 RchiOBHm_Chr4g0417531 RchiOBHm_Chr4g0417641 RchiOBHm_Chr4g0417651 RchiOBHm_Chr4g0417701 RchiOBHm_Chr4g0417731 RchiOBHm_Chr4g0417741 RchiOBHm_Chr4g0417781 RchiOBHm_Chr4g0418751 RchiOBHm_Chr4g0418791 RchiOBHm_Chr4g0418861 RchiOBHm_Chr4g0418881 RchiOBHm_Chr4g0418901 RchiOBHm_Chr4g0422451 RchiOBHm_Chr4g0422461 RchiOBHm_Chr4g0422471 RchiOBHm_Chr4g0422541 RchiOBHm_Chr4g0422561 RchiOBHm_Chr4g0422591 RchiOBHm_Chr4g0422651 RchiOBHm_Chr4g0422661 RchiOBHm_Chr5g0003251 RchiOBHm_Chr5g0003261 RchiOBHm_Chr5g0055871 RchiOBHm_Chr7g0204701 RchiOBHm_Chr7g0204741
rosa_laevigata RLG00000007607 RLG00000007932 RLG00000017606 RLG00000024418 RLG00000025629 RLG00000030586
rosa_multiflora Rmu_co7959167.1_g000001 Rmu_co8021330.1_g000001 Rmu_co8132128.1_g000001 Rmu_co8224744.1_g000001 Rmu_co8281865.1_g000001 Rmu_co8298487.1_g000001 Rmu_co8319035.1_g000001 Rmu_co8380035.1_g000001 Rmu_co8385371.1_g000001 Rmu_co8398173.1_g000001 Rmu_co8423363.1_g000001 Rmu_co8438275.1_g000001 Rmu_co8474729.1_g000001 Rmu_sc0000057.1_g000008 Rmu_sc0000350.1_g000023 Rmu_sc0000480.1_g000005 Rmu_sc0000654.1_g000021 Rmu_sc0000654.1_g000029 Rmu_sc0000654.1_g000032 Rmu_sc0000654.1_g000041 Rmu_sc0000654.1_g000045 Rmu_sc0000772.1_g000002 Rmu_sc0000772.1_g000041 Rmu_sc0000808.1_g000040 Rmu_sc0000830.1_g000062 Rmu_sc0000830.1_g000065 Rmu_sc0000830.1_g000072 Rmu_sc0000830.1_g000073 Rmu_sc0000935.1_g000020 Rmu_sc0000935.1_g000024 Rmu_sc0000935.1_g000026 Rmu_sc0000935.1_g000027 Rmu_sc0000935.1_g000031 Rmu_sc0000935.1_g000033 Rmu_sc0000962.1_g000033 Rmu_sc0000962.1_g000036 Rmu_sc0000962.1_g000063 Rmu_sc0000962.1_g000064 Rmu_sc0000962.1_g000065 Rmu_sc0001029.1_g000007 Rmu_sc0001063.1_g000014 Rmu_sc0001149.1_g000010 Rmu_sc0001149.1_g000011 Rmu_sc0001358.1_g000009 Rmu_sc0001448.1_g000003 Rmu_sc0001448.1_g000004 Rmu_sc0001729.1_g000005 Rmu_sc0001729.1_g000007 Rmu_sc0001729.1_g000020 Rmu_sc0001729.1_g000023 Rmu_sc0001793.1_g000015 Rmu_sc0002494.1_g000018 Rmu_sc0002494.1_g000019 Rmu_sc0002604.1_g000022 Rmu_sc0002922.1_g000011 Rmu_sc0003008.1_g000009 Rmu_sc0003221.1_g000061 Rmu_sc0003221.1_g000062 Rmu_sc0003459.1_g000014 Rmu_sc0003480.1_g000015 Rmu_sc0003541.1_g000016 Rmu_sc0003541.1_g000020 Rmu_sc0004035.1_g000001 Rmu_sc0004035.1_g000005 Rmu_sc0004035.1_g000011 Rmu_sc0004142.1_g000004 Rmu_sc0004142.1_g000010 Rmu_sc0004353.1_g000008 Rmu_sc0004616.1_g000009 Rmu_sc0004616.1_g000010 Rmu_sc0005231.1_g000004 Rmu_sc0006380.1_g000025 Rmu_sc0006492.1_g000010 Rmu_sc0006895.1_g000001 Rmu_sc0006895.1_g000002 Rmu_sc0006895.1_g000005 Rmu_sc0007034.1_g000004 Rmu_sc0007104.1_g000006 Rmu_sc0008990.1_g000003 Rmu_sc0008990.1_g000004 Rmu_sc0009106.1_g000003 Rmu_sc0009516.1_g000002 Rmu_sc0009516.1_g000003 Rmu_sc0009516.1_g000004 Rmu_sc0009516.1_g000005 Rmu_sc0009645.1_g000001 Rmu_sc0010274.1_g000001 Rmu_sc0010274.1_g000002 Rmu_sc0010419.1_g000003 Rmu_sc0010917.1_g000017 Rmu_sc0011213.1_g000001 Rmu_sc0011228.1_g000007 Rmu_sc0011538.1_g000011 Rmu_sc0011538.1_g000014 Rmu_sc0011538.1_g000015 Rmu_sc0012211.1_g000006 Rmu_sc0012351.1_g000003 Rmu_sc0012351.1_g000005 Rmu_sc0012915.1_g000002 Rmu_sc0013088.1_g000001 Rmu_sc0013459.1_g000001 Rmu_sc0013765.1_g000004 Rmu_sc0013765.1_g000005 Rmu_sc0014003.1_g000012 Rmu_sc0014003.1_g000014 Rmu_sc0014698.1_g000001 Rmu_sc0015740.1_g000001 Rmu_sc0016429.1_g000003 Rmu_sc0018885.1_g000001 Rmu_sc0020345.1_g000001 Rmu_sc0027791.1_g000001 Rmu_sc0037325.1_g000001 Rmu_ssc0000010.1_g000024 Rmu_ssc0000010.1_g000025 Rmu_ssc0000083.1_g000021 Rmu_ssc0000340.1_g000002 Rmu_ssc0000386.1_g000002 Rmu_ssc0000386.1_g000024 Rmu_ssc0000386.1_g000025 Rmu_ssc0000386.1_g000034 Rmu_ssc0000386.1_g000037 Rmu_ssc0000477.1_g000001
rosa_roxburghii Rroxscaffold_161G00448010 Rroxscaffold_164G00436080 Rroxscaffold_1G00024500 Rroxscaffold_2G00124290 Rroxscaffold_3G00222940 Rroxscaffold_3G00227440 Rroxscaffold_4G00304810 Rroxscaffold_4G00330180 Rroxscaffold_4G00330200 Rroxscaffold_5G00356620 Rroxscaffold_5G00358170 Rroxscaffold_5G00360880 Rroxscaffold_5G00361220 Rroxscaffold_5G00361950 Rroxscaffold_5G00361960 Rroxscaffold_5G00361990 Rroxscaffold_5G00362370 Rroxscaffold_5G00364540 Rroxscaffold_5G00364550 Rroxscaffold_5G00364580 Rroxscaffold_5G00364600 Rroxscaffold_6G00393290 Rroxscaffold_6G00412680 Rroxscaffold_6G00412790 Rroxscaffold_6G00413470 Rroxscaffold_6G00413720 Rroxscaffold_6G00416070 Rroxscaffold_7G00205400
rosa_rugosa Rorug01G0017300 Rorug01G0017400 Rorug01G0018000 Rorug01G0018100 Rorug01G0211500 Rorug02G0638200 Rorug03G0070000 Rorug03G0071200 Rorug03G0081000 Rorug03G0086500 Rorug03G0089300 Rorug03G0095300 Rorug03G0096000 Rorug03G0096000 Rorug04G0055000 Rorug04G0078300 Rorug04G0104100.1 Rorug04G0113800 Rorug04G0126700 Rorug04G0128000 Rorug04G0145900 Rorug04G0148700 Rorug04G0149100 Rorug04G0149100 Rorug04G0149200 Rorug04G0149300 Rorug04G0154900 Rorug04G0180400 Rorug04G0180500 Rorug04G0180700 Rorug04G0180800 Rorug04G0401500 Rorug04G0402100 Rorug05G0288600 Rorug05G0334100 Rorug07G0176400
rosa_samantha Rh1DG043200 Rh1DG043500 Rh1DG043900 Rh1DG222800 Rh3CG039900 Rh3CG156200 Rh3CG328500 Rh3CG328800 Rh3DG165000 Rh4AG208400 Rh4BG205600 Rh4BG213900 Rh4BG243900 Rh4CG198800 Rh4DG168600 Rh4DG180100 Rh4DG180300 Rh4DG180600 Rh4DG181200 Rh4DG181600 Rh4DG181700 Rh4DG183700 Rh4DG184000 Rh4DG184400 Rh4DG184700 Rh4DG206100 Rh4DG206200 Rh4DG206300 Rh4DG215600 Rh4DG238700 Rh4DG238900 Rh5DG390300
rosa_wichuraiana Rw0G005050 Rw0G009260 Rw0G009280 Rw0G015600 Rw0G023570 Rw1G002140 Rw1G002170 Rw1G002210 Rw1G002240 Rw1G019500 Rw2G015490 Rw3G003020 Rw3G010900 Rw3G012030 Rw3G012790 Rw3G013050 Rw3G013540 Rw3G013640 Rw3G013650 Rw3G026050 Rw3G026070 Rw4G015740 Rw4G015790 Rw4G015910 Rw4G015930 Rw4G015950 Rw4G017900 Rw4G017930 Rw4G018440 Rw4G018450 Rw4G018530 Rw4G020720 Rw4G020760 Rw5G019250 Rw5G034370 Rw7G018700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 188
AatII GACGTC 1 cut(s) 1730
AccB1I GGYRCC 1 cut(s) 1019
AccI GTMKAC 1 cut(s) 1594
AciI CCGC 3 cut(s) 1605, 1678, 2070
AclWI GGATC 3 cut(s) 34, 291, 1256
AcoI YGGCCR 1 cut(s) 974
AcsI RAATTY 3 cut(s) 472, 875, 2022
AcuI CTGAAG 1 cut(s) 703
AcyI GRCGYC 2 cut(s) 1671, 1727
AfaI GTAC 3 cut(s) 403, 960, 2054
AfiI CCNNNNNNNGG 6 cut(s) 749, 1109, 1398, 1604, 1918, 1989
AflIII ACRYGT 7 cut(s) 307, 430, 640, 808, 955, 1132, 1165
AjnI CCWGG 2 cut(s) 82, 742
AjuI GAANNNNNNNTTGG 2 cut(s) 827, 859
AleI CACNNNNGTG 1 cut(s) 720
AloI GAACNNNNNNTCC 2 cut(s) 24, 56
Alw21I GWGCWC 4 cut(s) 219, 1267, 1929, 2202
Alw26I GTCTC 6 cut(s) 631, 885, 1052, 1469, 1823, 2013
Alw44I GTGCAC 1 cut(s) 215
AlwI GGATC 3 cut(s) 34, 291, 1256
AlwNI CAGNNNCTG 1 cut(s) 2237
AoxI GGCC 8 cut(s) 781, 967, 974, 1322, 1909, 1994, 2233, 2243
ApaI GGGCCC 1 cut(s) 1326
ApaLI GTGCAC 1 cut(s) 215
ApeKI GCWGC 6 cut(s) 921, 930, 933, 997, 1332, 1476
ApoI RAATTY 3 cut(s) 472, 875, 2022
AseI ATTAAT 1 cut(s) 939
Asp700I GAANNNNTTC 1 cut(s) 1098
AspLEI GCGC 1 cut(s) 372
AspS9I GGNCC 6 cut(s) 740, 1322, 1323, 1910, 2234, 2244
AsuC2I CCSGG 1 cut(s) 8
AsuHPI GGTGA 4 cut(s) 1051, 1435, 1876, 2176
AvaII GGWCC 1 cut(s) 740
BaeGI GKGCMC 2 cut(s) 219, 1326
BanI GGYRCC 1 cut(s) 1019
BanII GRGCYC 4 cut(s) 1326, 1611, 1929, 2202
BauI CACGAG 1 cut(s) 315
BbsI GAAGAC 1 cut(s) 1730
Bbv12I GWGCWC 4 cut(s) 219, 1267, 1929, 2202
BbvI GCAGC 6 cut(s) 933, 942, 945, 984, 1319, 1463
BciT130I CCWGG 2 cut(s) 84, 744
BciVI GTATCC 1 cut(s) 247
BclI TGATCA 2 cut(s) 627, 1281
BcnI CCSGG 1 cut(s) 8
BcoDI GTCTC 6 cut(s) 631, 885, 1052, 1469, 1823, 2013
BfmI CTRYAG 2 cut(s) 588, 998
BfuI GTATCC 1 cut(s) 247
BglII AGATCT 2 cut(s) 592, 1025
BisI GCNGC 6 cut(s) 922, 931, 934, 998, 1333, 1477
BlsI GCNGC 6 cut(s) 923, 932, 935, 999, 1334, 1478
Bme1390I CCNGG 3 cut(s) 8, 84, 744
Bme18I GGWCC 1 cut(s) 740
BmgT120I GGNCC 6 cut(s) 740, 1322, 1323, 1910, 2234, 2244
BmiI GGNNCC 4 cut(s) 741, 1021, 1324, 1610
BmrFI CCNGG 3 cut(s) 8, 84, 744
BmrI ACTGGG 2 cut(s) 393, 1118
BmsI GCATC 2 cut(s) 246, 1418
BmuI ACTGGG 2 cut(s) 393, 1118
BpiI GAAGAC 1 cut(s) 1730
Bpu10I CCTNAGC 2 cut(s) 57, 1998
BpuEI CTTGAG 7 cut(s) 655, 1640, 1766, 1988, 2005, 2132, 2135
BpuMI CCSGG 1 cut(s) 8
Bsa29I ATCGAT 1 cut(s) 1441
BsaAI YACGTR 1 cut(s) 431
BsaBI GATNNNNATC 1 cut(s) 1247
BsaHI GRCGYC 2 cut(s) 1671, 1727
BsaI GGTCTC 1 cut(s) 1469
BsaJI CCNNGG 1 cut(s) 168
BsaXI ACNNNNNCTCC 2 cut(s) 2148, 2178
Bsc4I CCNNNNNNNGG 6 cut(s) 749, 1109, 1398, 1604, 1918, 1989
Bse1I ACTGG 2 cut(s) 399, 1113
Bse3DI GCAATG 1 cut(s) 1404
Bse8I GATNNNNATC 1 cut(s) 1247
BseBI CCWGG 2 cut(s) 84, 744
BseCI ATCGAT 1 cut(s) 1441
BseDI CCNNGG 1 cut(s) 168
BseGI GGATG 8 cut(s) 57, 70, 79, 178, 1155, 1649, 1712, 2219
BseJI GATNNNNATC 1 cut(s) 1247
BseLI CCNNNNNNNGG 6 cut(s) 749, 1109, 1398, 1604, 1918, 1989
BseMI GCAATG 1 cut(s) 1404
BseMII CTCAG 5 cut(s) 71, 288, 566, 1932, 2079
BseNI ACTGG 2 cut(s) 399, 1113
BseRI GAGGAG 8 cut(s) 476, 863, 1257, 1457, 1601, 1763, 1937, 2213
BseSI GKGCMC 2 cut(s) 219, 1326
BseXI GCAGC 6 cut(s) 933, 942, 945, 984, 1319, 1463
BseYI CCCAGC 3 cut(s) 674, 1229, 2016
BsgI GTGCAG 2 cut(s) 1318, 1462
BshFI GGCC 8 cut(s) 783, 969, 976, 1324, 1911, 1996, 2235, 2245
BshNI GGYRCC 1 cut(s) 1019
BshVI ATCGAT 1 cut(s) 1441
BsiHKAI GWGCWC 4 cut(s) 219, 1267, 1929, 2202
BsiSI CCGG 2 cut(s) 8, 973
BslFI GGGAC 5 cut(s) 380, 753, 1212, 1646, 2202
BslI CCNNNNNNNGG 6 cut(s) 749, 1109, 1398, 1604, 1918, 1989
BsmAI GTCTC 6 cut(s) 631, 885, 1052, 1469, 1823, 2013
BsmBI CGTCTC 1 cut(s) 885
BsmFI GGGAC 5 cut(s) 380, 753, 1212, 1646, 2202
BsmI GAATGC 1 cut(s) 585
BsnI GGCC 8 cut(s) 783, 969, 976, 1324, 1911, 1996, 2235, 2245
Bso31I GGTCTC 1 cut(s) 1469
Bsp120I GGGCCC 1 cut(s) 1322
Bsp1286I GDGCHC 6 cut(s) 219, 1267, 1326, 1611, 1929, 2202
Bsp1407I TGTACA 1 cut(s) 2052
Bsp143I GATC 9 cut(s) 39, 208, 283, 592, 627, 1025, 1248, 1281, 1438
BspACI CCGC 3 cut(s) 1605, 1678, 2070
BspANI GGCC 8 cut(s) 783, 969, 976, 1324, 1911, 1996, 2235, 2245
BspCNI CTCAG 5 cut(s) 70, 289, 567, 1933, 2080
BspDI ATCGAT 1 cut(s) 1441
BspLI GGNNCC 4 cut(s) 741, 1021, 1324, 1610
BspMAI CTGCAG 1 cut(s) 1002
BspPI GGATC 3 cut(s) 34, 291, 1256
BspQI GCTCTTC 1 cut(s) 2088
BspT107I GGYRCC 1 cut(s) 1019
BspTNI GGTCTC 1 cut(s) 1469
BsrDI GCAATG 1 cut(s) 1404
BsrGI TGTACA 1 cut(s) 2052
BsrI ACTGG 2 cut(s) 399, 1113
BssECI CCNNGG 1 cut(s) 168
BssMI GATC 9 cut(s) 39, 208, 283, 592, 627, 1025, 1248, 1281, 1438
BssNI GRCGYC 2 cut(s) 1671, 1727
BssSI CACGAG 1 cut(s) 315
BssT1I CCWWGG 1 cut(s) 168
Bst2BI CACGAG 1 cut(s) 315
Bst2UI CCWGG 2 cut(s) 84, 744
Bst4CI ACNGT 1 cut(s) 36
Bst6I CTCTTC 4 cut(s) 809, 848, 1968, 2088
BstACI GRCGYC 2 cut(s) 1671, 1727
BstAPI GCANNNNNTGC 1 cut(s) 997
BstAUI TGTACA 1 cut(s) 2052
BstBAI YACGTR 1 cut(s) 431
BstC8I GCNNGC 4 cut(s) 554, 585, 869, 1607
BstF5I GGATG 8 cut(s) 57, 70, 79, 178, 1155, 1649, 1712, 2219
BstHHI GCGC 1 cut(s) 372
BstKTI GATC 9 cut(s) 42, 211, 286, 595, 630, 1028, 1251, 1284, 1441
BstMAI GTCTC 6 cut(s) 631, 885, 1052, 1469, 1823, 2013
BstMBI GATC 9 cut(s) 39, 208, 283, 592, 627, 1025, 1248, 1281, 1438
BstMWI GCNNNNNNNGC 7 cut(s) 836, 927, 930, 997, 1677, 1762, 2026
BstNI CCWGG 2 cut(s) 84, 744
BstNSI RCATGY 7 cut(s) 311, 587, 644, 812, 959, 1136, 1169
BstSCI CCNGG 3 cut(s) 6, 82, 742
BstSFI CTRYAG 2 cut(s) 588, 998
BstSLI GKGCMC 2 cut(s) 219, 1326
BstV1I GCAGC 6 cut(s) 933, 942, 945, 984, 1319, 1463
BstV2I GAAGAC 1 cut(s) 1730
BstX2I RGATCY 2 cut(s) 592, 1025
BstYI RGATCY 2 cut(s) 592, 1025
Bsu15I ATCGAT 1 cut(s) 1441
BsuI GTATCC 1 cut(s) 247
BsuRI GGCC 8 cut(s) 783, 969, 976, 1324, 1911, 1996, 2235, 2245
BsuTUI ATCGAT 1 cut(s) 1441
BtsCI GGATG 8 cut(s) 57, 70, 79, 178, 1155, 1649, 1712, 2219
BtsI GCAGTG 3 cut(s) 1078, 1267, 1876
BtsIMutI CAGTG 6 cut(s) 572, 727, 1078, 1106, 1267, 1876
Cac8I GCNNGC 4 cut(s) 554, 585, 869, 1607
CaiI CAGNNNCTG 1 cut(s) 2237
CfoI GCGC 1 cut(s) 372
Cfr13I GGNCC 6 cut(s) 740, 1322, 1323, 1910, 2234, 2244
ClaI ATCGAT 1 cut(s) 1441
CseI GACGC 3 cut(s) 438, 1498, 1660
Csp6I GTAC 3 cut(s) 402, 959, 2053
CviQI GTAC 3 cut(s) 402, 959, 2053
DpnI GATC 9 cut(s) 41, 210, 285, 594, 629, 1027, 1250, 1283, 1440
DpnII GATC 9 cut(s) 39, 208, 283, 592, 627, 1025, 1248, 1281, 1438
DraI TTTAAA 2 cut(s) 880, 1432
EaeI YGGCCR 1 cut(s) 974
Eam1104I CTCTTC 4 cut(s) 809, 848, 1968, 2088
EarI CTCTTC 4 cut(s) 809, 848, 1968, 2088
Ecl136II GAGCTC 2 cut(s) 1927, 2200
Eco130I CCWWGG 1 cut(s) 168
Eco147I AGGCCT 1 cut(s) 969
Eco24I GRGCYC 4 cut(s) 1326, 1611, 1929, 2202
Eco31I GGTCTC 1 cut(s) 1469
Eco32I GATATC 1 cut(s) 1635
Eco47I GGWCC 1 cut(s) 740
Eco53kI GAGCTC 2 cut(s) 1927, 2200
Eco57I CTGAAG 1 cut(s) 703
EcoICRI GAGCTC 2 cut(s) 1927, 2200
EcoO109I RGGNCCY 3 cut(s) 740, 1323, 2234
EcoRI GAATTC 1 cut(s) 472
EcoRII CCWGG 2 cut(s) 82, 742
EcoRV GATATC 1 cut(s) 1635
EcoT14I CCWWGG 1 cut(s) 168
EcoT22I ATGCAT 2 cut(s) 207, 585
EcoT38I GRGCYC 4 cut(s) 1326, 1611, 1929, 2202
ErhI CCWWGG 1 cut(s) 168
Esp3I CGTCTC 1 cut(s) 885
FaqI GGGAC 5 cut(s) 380, 753, 1212, 1646, 2202
FauI CCCGC 1 cut(s) 1598
FauNDI CATATG 1 cut(s) 1209
FbaI TGATCA 2 cut(s) 627, 1281
FblI GTMKAC 1 cut(s) 1594
Fnu4HI GCNGC 6 cut(s) 922, 931, 934, 998, 1333, 1477
FokI GGATG 8 cut(s) 57, 64, 66, 185, 1162, 1636, 1699, 2226
FriOI GRGCYC 4 cut(s) 1326, 1611, 1929, 2202
Fsp4HI GCNGC 6 cut(s) 922, 931, 934, 998, 1333, 1477
GlaI GCGC 1 cut(s) 371
GluI GCNGC 6 cut(s) 922, 931, 934, 998, 1333, 1477
GsaI CCCAGC 3 cut(s) 678, 1233, 2020
HaeIII GGCC 8 cut(s) 783, 969, 976, 1324, 1911, 1996, 2235, 2245
HapII CCGG 2 cut(s) 8, 973
HgaI GACGC 3 cut(s) 438, 1498, 1660
HhaI GCGC 1 cut(s) 372
Hin1I GRCGYC 2 cut(s) 1671, 1727
Hin6I GCGC 1 cut(s) 370
HinP1I GCGC 1 cut(s) 370
HincII GTYRAC 2 cut(s) 1115, 1980
HindII GTYRAC 2 cut(s) 1115, 1980
HpaI GTTAAC 1 cut(s) 1980
HpaII CCGG 2 cut(s) 8, 973
HphI GGTGA 4 cut(s) 1051, 1435, 1876, 2176
Hpy166II GTNNAC 4 cut(s) 217, 1115, 1595, 1980
Hpy188I TCNGA 4 cut(s) 349, 916, 1248, 1488
Hpy8I GTNNAC 4 cut(s) 217, 1115, 1595, 1980
Hpy99I CGWCG 2 cut(s) 454, 1732
HpyAV CCTTC 7 cut(s) 575, 829, 902, 959, 1088, 1945, 2188
HpyCH4III ACNGT 1 cut(s) 36
HpyCH4IV ACGT 2 cut(s) 430, 1727
HpyF10VI GCNNNNNNNGC 7 cut(s) 836, 927, 930, 997, 1677, 1762, 2026
HpySE526I ACGT 2 cut(s) 430, 1727
Hsp92I GRCGYC 2 cut(s) 1671, 1727
HspAI GCGC 1 cut(s) 370
Ksp22I TGATCA 2 cut(s) 627, 1281
KspAI GTTAAC 1 cut(s) 1980
Kzo9I GATC 9 cut(s) 39, 208, 283, 592, 627, 1025, 1248, 1281, 1438
LguI GCTCTTC 1 cut(s) 2088
LmnI GCTCC 6 cut(s) 1172, 1270, 1614, 1924, 1932, 2197
Lsp1109I GCAGC 6 cut(s) 933, 942, 945, 984, 1319, 1463
LweI GCATC 2 cut(s) 246, 1418
MaeII ACGT 2 cut(s) 430, 1727
MaeIII GTNAC 2 cut(s) 163, 2206
MalI GATC 9 cut(s) 41, 210, 285, 594, 629, 1027, 1250, 1283, 1440
MboI GATC 9 cut(s) 39, 208, 283, 592, 627, 1025, 1248, 1281, 1438
MfeI CAATTG 5 cut(s) 21, 477, 689, 773, 1087
MflI RGATCY 2 cut(s) 592, 1025
MhlI GDGCHC 6 cut(s) 219, 1267, 1326, 1611, 1929, 2202
MlyI GAGTC 3 cut(s) 359, 1181, 1247
MmeI TCCRAC 2 cut(s) 67, 1412
Mph1103I ATGCAT 2 cut(s) 207, 585
MroXI GAANNNNTTC 1 cut(s) 1098
MseI TTAA 7 cut(s) 879, 939, 1005, 1431, 1853, 1979, 2273
MslI CAYNNNNRTG 3 cut(s) 720, 954, 1721
MspA1I CMGCKG 2 cut(s) 674, 2070
MspI CCGG 2 cut(s) 8, 973
MspR9I CCNGG 3 cut(s) 8, 84, 744
MunI CAATTG 5 cut(s) 21, 477, 689, 773, 1087
Mva1269I GAATGC 1 cut(s) 585
MvaI CCWGG 2 cut(s) 84, 744
MwoI GCNNNNNNNGC 7 cut(s) 836, 927, 930, 997, 1677, 1762, 2026
NciI CCSGG 1 cut(s) 8
NdeI CATATG 1 cut(s) 1209
NdeII GATC 9 cut(s) 39, 208, 283, 592, 627, 1025, 1248, 1281, 1438
NlaIV GGNNCC 4 cut(s) 741, 1021, 1324, 1610
NsiI ATGCAT 2 cut(s) 207, 585
NspI RCATGY 7 cut(s) 311, 587, 644, 812, 959, 1136, 1169
OliI CACNNNNGTG 1 cut(s) 720
PaeI GCATGC 1 cut(s) 587
PceI AGGCCT 1 cut(s) 969
PciI ACATGT 6 cut(s) 307, 640, 808, 955, 1132, 1165
PciSI GCTCTTC 1 cut(s) 2088
PctI GAATGC 1 cut(s) 585
PdmI GAANNNNTTC 1 cut(s) 1098
PfeI GAWTC 8 cut(s) 301, 525, 667, 799, 1011, 1243, 2119, 2143
PflFI GACNNNGTC 1 cut(s) 1729
PfoI TCCNGGA 1 cut(s) 6
PkrI GCNGC 6 cut(s) 923, 932, 935, 999, 1334, 1478
PleI GAGTC 3 cut(s) 358, 1181, 1246
PpsI GAGTC 3 cut(s) 358, 1181, 1246
Ppu21I YACGTR 1 cut(s) 431
PpuMI RGGWCCY 1 cut(s) 740
PscI ACATGT 6 cut(s) 307, 640, 808, 955, 1132, 1165
PshBI ATTAAT 1 cut(s) 939
PsiI TTATAA 1 cut(s) 188
Psp124BI GAGCTC 2 cut(s) 1929, 2202
Psp5II RGGWCCY 1 cut(s) 740
Psp6I CCWGG 2 cut(s) 82, 742
PspFI CCCAGC 3 cut(s) 674, 1229, 2016
PspGI CCWGG 2 cut(s) 82, 742
PspN4I GGNNCC 4 cut(s) 741, 1021, 1324, 1610
PspOMI GGGCCC 1 cut(s) 1322
PspPI GGNCC 6 cut(s) 740, 1322, 1323, 1910, 2234, 2244
PspPPI RGGWCCY 1 cut(s) 740
PstI CTGCAG 1 cut(s) 1002
PstNI CAGNNNCTG 1 cut(s) 2237
PsuI RGATCY 2 cut(s) 592, 1025
PsyI GACNNNGTC 1 cut(s) 1729
PvuII CAGCTG 1 cut(s) 674
RsaI GTAC 3 cut(s) 403, 960, 2054
RsaNI GTAC 3 cut(s) 402, 959, 2053
RseI CAYNNNNRTG 3 cut(s) 720, 954, 1721
SacI GAGCTC 2 cut(s) 1929, 2202
SapI GCTCTTC 1 cut(s) 2088
SaqAI TTAA 7 cut(s) 879, 939, 1005, 1431, 1853, 1979, 2273
SatI GCNGC 6 cut(s) 922, 931, 934, 998, 1333, 1477
Sau3AI GATC 9 cut(s) 39, 208, 283, 592, 627, 1025, 1248, 1281, 1438
Sau96I GGNCC 6 cut(s) 740, 1322, 1323, 1910, 2234, 2244
SchI GAGTC 3 cut(s) 359, 1181, 1247
ScrFI CCNGG 3 cut(s) 8, 84, 744
SduI GDGCHC 6 cut(s) 219, 1267, 1326, 1611, 1929, 2202
SfaNI GCATC 2 cut(s) 246, 1418
SfcI CTRYAG 2 cut(s) 588, 998
SinI GGWCC 1 cut(s) 740
SmiI ATTTAAAT 1 cut(s) 880
SmiMI CAYNNNNRTG 3 cut(s) 720, 954, 1721
SmlI CTYRAG 7 cut(s) 634, 1619, 1745, 1984, 2003, 2114, 2147
SmoI CTYRAG 7 cut(s) 634, 1619, 1745, 1984, 2003, 2114, 2147
SphI GCATGC 1 cut(s) 587
SseBI AGGCCT 1 cut(s) 969
SsiI CCGC 3 cut(s) 1605, 1678, 2070
SspI AATATT 3 cut(s) 133, 358, 1521
SstI GAGCTC 2 cut(s) 1929, 2202
StuI AGGCCT 1 cut(s) 969
StyD4I CCNGG 3 cut(s) 6, 82, 742
StyI CCWWGG 1 cut(s) 168
SwaI ATTTAAAT 1 cut(s) 880
TaaI ACNGT 1 cut(s) 36
TaiI ACGT 2 cut(s) 433, 1730
TaqI TCGA 8 cut(s) 254, 304, 528, 597, 1137, 1241, 1441, 2202
TatI WGTACW 2 cut(s) 958, 2052
TfiI GAWTC 8 cut(s) 301, 525, 667, 799, 1011, 1243, 2119, 2143
Tru1I TTAA 7 cut(s) 879, 939, 1005, 1431, 1853, 1979, 2273
Tru9I TTAA 7 cut(s) 879, 939, 1005, 1431, 1853, 1979, 2273
TscAI CASTG 6 cut(s) 579, 727, 1085, 1113, 1267, 1883
TseI GCWGC 6 cut(s) 921, 930, 933, 997, 1332, 1476
TspDTI ATGAA 4 cut(s) 405, 632, 960, 966
TspGWI ACGGA 4 cut(s) 1020, 1262, 1544, 1811
TspRI CASTG 6 cut(s) 579, 727, 1085, 1113, 1267, 1883
Tth111I GACNNNGTC 1 cut(s) 1729
VneI GTGCAC 1 cut(s) 215
VpaK11BI GGWCC 1 cut(s) 740
VspI ATTAAT 1 cut(s) 939
XapI RAATTY 3 cut(s) 472, 875, 2022
XbaI TCTAGA 4 cut(s) 505, 802, 1183, 1414
XceI RCATGY 7 cut(s) 311, 587, 644, 812, 959, 1136, 1169
XmiI GTMKAC 1 cut(s) 1594
XmnI GAANNNNTTC 1 cut(s) 1098
ZraI GACGTC 1 cut(s) 1728
Zsp2I ATGCAT 2 cut(s) 207, 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.