MD02G1070300.v1.1

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0000029
Physical Location & Seq
Reverse (-)
5709581 .. 5720289
10709 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1070300.v1.1.491

Sequence Viewer

Length: 3144 bp
ATGAAGAAGAAGGTACTTAACTTCTTTTCGCTCTCCAATCCCATTTTATTTCGTCAAAAGATGGCACACAAGATTAAGAACATCAATGCGTCCCTGGCGGTTCTCAAGAGTGAGGCATCTTTCATTGGCTTAGTTGCAAGGAGAGAAGATCAAACCCTTCCAGCTATGGGGAACAGAGAAACCGTCTCAAGCTTCCGTCAGGATGAGAAGATCATTGGAAGGGAGAAGACAGTGTCGGATATCATTGCAACCTTGATCGAGTCCAAGAATCAGGAAAATAACCTTTCGGTTATGGCCGTTGTGGGATTGGGAGGACTTGGAAAGACGACTTTGGCAAAATCAATATTCAATGATGATGCTATTGGTGGACATTTCCAGGAAAAAATGTGGGTGTGTGTATCCAACCCTTTTTACGTTAATTCGATTCTAAATCGGATGTTAGAGTCCCTTAAATTGGCAGGATGTACAAGTCGGGAAGCATCGCTGAATAACCTCAAAGAAAGGTTGAAAGGGAAGAGATATATGCTGATACTCGATGATGTTTGGAATGAAGCTGAGGATTTATGGAGCAGTTTTACGGATTGTTTGTCGATGCTCAATTCTGCTCCCGGAAGCATTACCATTGTTACTACCCGCAGTGAAAAGGTTGCATTAATCACGGGGACAATGCCGAAGTGTGATTTGGGGCTCCTATCAAACGAGGATTGTTGGTCCATATTAAGGGGTGAAGCATTACGAAATGGTAATGCTCGTTCTCTAGATTCAGATCAAGAGGGCATTGGAAGGGCGATAGCTGAAAAGTGTGCCGGTGTACCATTGGTGGCAAAGGTTTTAGGAAGCCTGATGCGTTCTAAAAATAGCAGGCGTGAATGGTCGTCAATTCTAGAAAGTAAAATATGGGAATTACCAAATGAAGAGGAGAAAATCATGTCGGTCTTGAAGTTGAGTTTTGATAATTTAACACCGTCATTATTGAAGCAATGTTTTGCATATTGCTCAATGTTTGTGAAAGATTTTGAAATTGAAAAAGATGACTTGGTCCAGCTCTGGATGGCTCAAGGATATCTCCATTCTTCTACCAACGTGAGTATGGAGGATATAGGTAATGAATATTTTAATATTCTATTGCAAAATTCTTTATTTCAAGATGCTAGAGAAGAGTACAGTATTACCATTTGCAAGATGCACGATCTGGTGCATGATCTTGCAGAAAAAGCATTCAAATTTGAAAGCTTGACGCGAGACTTGGATCAGATGGATGATGATGCACTTGAGATTCAGCATGTTGCGCGGATTTCTTCCACTACACTTGAAAGAATTCCAAAAGGGAGTGTTAAGAGATTGCGGTCGTTGTTTGTTGATTGCAAGGTCCCTAGTGGTAACATCTTTGAAAGGTTTAAAGGTTTACGGATGTTGAATTTATTCGATGCTGAAATTGAGGAGTTGCCCAATTCAATTGGAAAGTTGAAACGCTTGAGGTATCTCAACATTTCCTGGACAGGAATAAAAGAACTCCCAAAATCTGTTGGCAAGCTCTATAATCTTCAAACGTTAAGAATGTTAAGAGCATGGAGGCTTAAAACGTTTCCTAGGGAAATGGAAAATTTGATCAACTTGAGACATGTTTATTTCGACGGGGATGTGGAAGTTCCATTTGGAATGACAAGATTGACTCATCTGCAAACACTATCTTCTTTTAAATTGGATAGAGCAAGGCGTCATAGACTTGATGAGCTAGGTGGGTTAAATGAACTGAAAGGGAAACTAGTTATTGGATCATTGGAATTTGTGAGAGACAAGGAAGAAGCAATGAAATCAAAATTAGTGAAAAAGGCAAACCTACGAAAATTGATATTAAAATGGGGGTGGGTCCCTCCTGAAGAAAGAAATGGCAATTTTCTTGACGAGGATATTCTTGAAGGACTCCAGCCGCACCCCAACATAGAAAGCTTGAGGATTGAGGAATTCAAGGGTACTAAATTTGCATCATGGATGATGAGCGATTCTCGAGTAACCAATCTCCGTGAATTGAGAATTAGGAGTTGTGAGAAATTGTTGAGCTTGTGTTGTGGGTTAGACTATTGCCCTTCACTTGAGACAGTGGAAATTAAATATTGCCGCAATCTAGAATCCTTCCAAATTTCATCATCCCAGTCTCTTGAGGAGTTGAAAATAGTTGATTGCCCAAAGTTAAGATGCACTTCAATTCAGAATATGCCCTCACTCCGTGATTTGGTTATTGAGAGATGCACTACTCTCGAGGAAGACTTGTCTTTAAACGGTTGCACATCCCTCCGTCATTTGATTATTAGATACTGCGATGGATTCAAAAGTATACTGAGTGGGCTCCTTTCTTGTACCAGTCTTCGCACAATGGATATTTATAAATGTCCAAATTTGAGGACTTTGTCGGGTCCTGGGCTACAAACCCCCGTCTCTCTTGAACATCTAAGTATCAAGCATTGCAGTAATCTGGAGGCTCTTCCCAGTTTAGACAACCTCACATCCCTCCTTGAATTGTCTATTGGCAACTGCGATCGATTAACAAGTATACCAAGTGGCCTCGCATCCTGCACATCTCTTACCAAATTACTGGTCGACTCATGCGACAATTTGATATCTCTGGCGGATCACAATGTGTCCAGCTTGCAATCTCTTTCCTCTTTATATTTATCTGAATGTGGGAAATTACAATATTTTCCCAAGGGGCTGCACTCTCTATCTCGTTTGGAAGTGTTGTCTATCGGTGCCTTCTGCCAAGAGCTCGATTCTTTCCCTGATTTTCAGGTCCCATCGAAACAATTAAGATTGTACGGGTGGCCTAAGCTCCAGTCTCTGCCTCAGCAAATTCAACACTCTGCTTCTCTAACACGTTTGTCCATTTCTTGTTTCGATGGTCTGGAGGCTCTTCCAGAATGGTTGGGCAACCTCACATCTCTTACACGGTTGTCAATTTGGAAATGTAAGAATCTGATGTATCTGCCTACGGTCGAAGCTATGCAACGCCTAACCAAATTACATGATCTAGAGATTGGACGGTGTCCCCGTCTGGAAGAAAGATGCGCCAAGGACAGCGGCCCAGAATGGCCAAAGATTTCTCACATTCCACATCTGAGTATTGACAGCAGAATGATTGTCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 ko04014 map03460 map04014
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

1048

Amino Acids

118.59

Weight (kDa)

7.94

Isoelectric Point (pI)

50.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 75 - 246 3.3e-32 NB-ARC domain
WHD_DRP PF23559 334 - 403 1.6e-25 Disease resistance protein Winged helix domain
LRR_14 PF23598 448 - 771 1.2e-28 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 576 - 705 2.2e-29 R13L1/DRL21 LRRs
LRR_14 PF23598 778 - 916 7.8e-06 Leucine-rich repeat region
LRR_RPS2 PF23247 881 - 1014 5.1e-07 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_14 PF23598 942 - 1039 7.9e-06 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 948 - 1007 2.8e-07 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000029)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13530 FvH4_4g18270 FvH4_6g12200 FvH4_6g12460 FvH4_6g12461 FvH4_6g13450 FvH4_6g15090 FvH4_6g15220 FvH4_6g15230 FvH4_6g15250 FvH4_6g15251 FvH4_6g15340 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47980 FvH4_6g47980 FvH4_6g47980 FvH4_6g48170 FvH4_6g48310 FvH4_6g48310 FvH4_6g48850 FvH4_6g48881 FvH4_7g11830
malus_domestica MD02G1059900.v1.1 MD02G1069600.v1.1 MD02G1069700.v1.1 MD02G1070100.v1.1 MD02G1070200.v1.1 MD02G1070300.v1.1 MD02G1070800.v1.1 MD02G1070900.v1.1 MD02G1071200.v1.1 MD02G1071400.v1.1 MD02G1071900.v1.1 MD02G1075200.v1.1 MD03G1048000.v1.1 MD03G1049100.v1.1 MD03G1049200.v1.1 MD03G1052500.v1.1 MD03G1054100.v1.1 MD03G1054300.v1.1 MD03G1054400.v1.1 MD04G1113400.v1.1 MD04G1211100.v1.1 MD04G1211200.v1.1 MD05G1174900.v1.1 MD05G1175000.v1.1 MD05G1175900.v1.1 MD05G1243400.v1.1 MD07G1031500.v1.1 MD07G1031600.v1.1 MD07G1032500.v1.1 MD11G1046800.v1.1 MD11G1046900.v1.1 MD11G1047000.v1.1 MD11G1050400.v1.1 MD11G1050600.v1.1 MD11G1050800.v1.1 MD11G1051100.v1.1 MD11G1051600.v1.1 MD11G1051700.v1.1 MD11G1054600.v1.1 MD11G1055600.v1.1 MD11G1055700.v1.1 MD11G1055800.v1.1 MD11G1056000.v1.1 MD12G1126600.v1.1 MD12G1126700.v1.1 MD12G1126800.v1.1 MD12G1127300.v1.1 MD12G1127600.v1.1 MD12G1127900.v1.1 MD12G1128100.v1.1 MD12G1128300.v1.1 MD15G1261500.v1.1
prunus_persica Prupe.1G010700_v2.0.a1 Prupe.1G010800_v2.0.a1 Prupe.1G011000_v2.0.a1 Prupe.1G159600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163700_v2.0.a1 Prupe.1G163700_v2.0.a1 Prupe.1G163800_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G235500_v2.0.a1 Prupe.2G067400_v2.0.a1 Prupe.2G067500_v2.0.a1 Prupe.2G111700_v2.0.a1 Prupe.2G111800_v2.0.a1 Prupe.3G012000_v2.0.a1 Prupe.6G243400_v2.0.a1 Prupe.6G243500_v2.0.a1 Prupe.6G243600_v2.0.a1 Prupe.6G243700_v2.0.a1 Prupe.6G243800_v2.0.a1 Prupe.6G243900_v2.0.a1
pyrus_communis pycom02g04860 pycom02g04880 pycom02g04890 pycom02g05510 pycom02g05520 pycom02g05600 pycom02g05930 pycom02g06000 pycom02g06010 pycom03g03800 pycom03g03860 pycom03g03880 pycom03g03890 pycom03g03910 pycom03g03920 pycom03g04200 pycom03g04290 pycom03g04300 pycom03g04310 pycom03g04320 pycom03g09260 pycom04g10150 pycom04g10160 pycom04g10170 pycom05g16180 pycom05g16190 pycom05g16240 pycom05g21980 pycom05g21990 pycom07g02280 pycom11g03800 pycom11g03810 pycom11g04080 pycom11g04140 pycom11g04150 pycom11g04160 pycom11g04570 pycom11g04580 pycom11g04590 pycom11g04610 pycom12g12470 pycom12g12490 pycom13g22050
rosa_chinensis RchiOBHm_Chr1g0317761 RchiOBHm_Chr1g0317821 RchiOBHm_Chr1g0317831 RchiOBHm_Chr1g0317871 RchiOBHm_Chr1g0350501 RchiOBHm_Chr2g0107631 RchiOBHm_Chr3g0452091 RchiOBHm_Chr3g0464001 RchiOBHm_Chr3g0464281 RchiOBHm_Chr3g0466331 RchiOBHm_Chr3g0467341 RchiOBHm_Chr3g0467381 RchiOBHm_Chr3g0467731 RchiOBHm_Chr3g0468291 RchiOBHm_Chr3g0468321 RchiOBHm_Chr3g0468341 RchiOBHm_Chr3g0468391 RchiOBHm_Chr3g0468411 RchiOBHm_Chr3g0468571 RchiOBHm_Chr3g0468591 RchiOBHm_Chr3g0490721 RchiOBHm_Chr3g0490751 RchiOBHm_Chr3g0490761 RchiOBHm_Chr3g0490771 RchiOBHm_Chr3g0490951 RchiOBHm_Chr3g0491001 RchiOBHm_Chr3g0491011 RchiOBHm_Chr4g0412461 RchiOBHm_Chr4g0414161 RchiOBHm_Chr4g0414181 RchiOBHm_Chr4g0414191 RchiOBHm_Chr4g0414281 RchiOBHm_Chr4g0414441 RchiOBHm_Chr4g0414521 RchiOBHm_Chr4g0414531 RchiOBHm_Chr4g0417011 RchiOBHm_Chr4g0417021 RchiOBHm_Chr4g0417041 RchiOBHm_Chr4g0417071 RchiOBHm_Chr4g0417101 RchiOBHm_Chr4g0417531 RchiOBHm_Chr4g0417641 RchiOBHm_Chr4g0417651 RchiOBHm_Chr4g0417701 RchiOBHm_Chr4g0417731 RchiOBHm_Chr4g0417741 RchiOBHm_Chr4g0417781 RchiOBHm_Chr4g0418751 RchiOBHm_Chr4g0418791 RchiOBHm_Chr4g0418861 RchiOBHm_Chr4g0418881 RchiOBHm_Chr4g0418901 RchiOBHm_Chr4g0422451 RchiOBHm_Chr4g0422461 RchiOBHm_Chr4g0422471 RchiOBHm_Chr4g0422541 RchiOBHm_Chr4g0422561 RchiOBHm_Chr4g0422591 RchiOBHm_Chr4g0422651 RchiOBHm_Chr4g0422661 RchiOBHm_Chr5g0003251 RchiOBHm_Chr5g0003261 RchiOBHm_Chr5g0055871 RchiOBHm_Chr7g0204701 RchiOBHm_Chr7g0204741
rosa_laevigata RLG00000007607 RLG00000007932 RLG00000017606 RLG00000024418 RLG00000025629 RLG00000030586
rosa_multiflora Rmu_co7959167.1_g000001 Rmu_co8021330.1_g000001 Rmu_co8132128.1_g000001 Rmu_co8224744.1_g000001 Rmu_co8281865.1_g000001 Rmu_co8298487.1_g000001 Rmu_co8319035.1_g000001 Rmu_co8380035.1_g000001 Rmu_co8385371.1_g000001 Rmu_co8398173.1_g000001 Rmu_co8423363.1_g000001 Rmu_co8438275.1_g000001 Rmu_co8474729.1_g000001 Rmu_sc0000057.1_g000008 Rmu_sc0000350.1_g000023 Rmu_sc0000480.1_g000005 Rmu_sc0000654.1_g000021 Rmu_sc0000654.1_g000029 Rmu_sc0000654.1_g000032 Rmu_sc0000654.1_g000041 Rmu_sc0000654.1_g000045 Rmu_sc0000772.1_g000002 Rmu_sc0000772.1_g000041 Rmu_sc0000808.1_g000040 Rmu_sc0000830.1_g000062 Rmu_sc0000830.1_g000065 Rmu_sc0000830.1_g000072 Rmu_sc0000830.1_g000073 Rmu_sc0000935.1_g000020 Rmu_sc0000935.1_g000024 Rmu_sc0000935.1_g000026 Rmu_sc0000935.1_g000027 Rmu_sc0000935.1_g000031 Rmu_sc0000935.1_g000033 Rmu_sc0000962.1_g000033 Rmu_sc0000962.1_g000036 Rmu_sc0000962.1_g000063 Rmu_sc0000962.1_g000064 Rmu_sc0000962.1_g000065 Rmu_sc0001029.1_g000007 Rmu_sc0001063.1_g000014 Rmu_sc0001149.1_g000010 Rmu_sc0001149.1_g000011 Rmu_sc0001358.1_g000009 Rmu_sc0001448.1_g000003 Rmu_sc0001448.1_g000004 Rmu_sc0001729.1_g000005 Rmu_sc0001729.1_g000007 Rmu_sc0001729.1_g000020 Rmu_sc0001729.1_g000023 Rmu_sc0001793.1_g000015 Rmu_sc0002494.1_g000018 Rmu_sc0002494.1_g000019 Rmu_sc0002604.1_g000022 Rmu_sc0002922.1_g000011 Rmu_sc0003008.1_g000009 Rmu_sc0003221.1_g000061 Rmu_sc0003221.1_g000062 Rmu_sc0003459.1_g000014 Rmu_sc0003480.1_g000015 Rmu_sc0003541.1_g000016 Rmu_sc0003541.1_g000020 Rmu_sc0004035.1_g000001 Rmu_sc0004035.1_g000005 Rmu_sc0004035.1_g000011 Rmu_sc0004142.1_g000004 Rmu_sc0004142.1_g000010 Rmu_sc0004353.1_g000008 Rmu_sc0004616.1_g000009 Rmu_sc0004616.1_g000010 Rmu_sc0005231.1_g000004 Rmu_sc0006380.1_g000025 Rmu_sc0006492.1_g000010 Rmu_sc0006895.1_g000001 Rmu_sc0006895.1_g000002 Rmu_sc0006895.1_g000005 Rmu_sc0007034.1_g000004 Rmu_sc0007104.1_g000006 Rmu_sc0008990.1_g000003 Rmu_sc0008990.1_g000004 Rmu_sc0009106.1_g000003 Rmu_sc0009516.1_g000002 Rmu_sc0009516.1_g000003 Rmu_sc0009516.1_g000004 Rmu_sc0009516.1_g000005 Rmu_sc0009645.1_g000001 Rmu_sc0010274.1_g000001 Rmu_sc0010274.1_g000002 Rmu_sc0010419.1_g000003 Rmu_sc0010917.1_g000017 Rmu_sc0011213.1_g000001 Rmu_sc0011228.1_g000007 Rmu_sc0011538.1_g000011 Rmu_sc0011538.1_g000014 Rmu_sc0011538.1_g000015 Rmu_sc0012211.1_g000006 Rmu_sc0012351.1_g000003 Rmu_sc0012351.1_g000005 Rmu_sc0012915.1_g000002 Rmu_sc0013088.1_g000001 Rmu_sc0013459.1_g000001 Rmu_sc0013765.1_g000004 Rmu_sc0013765.1_g000005 Rmu_sc0014003.1_g000012 Rmu_sc0014003.1_g000014 Rmu_sc0014698.1_g000001 Rmu_sc0015740.1_g000001 Rmu_sc0016429.1_g000003 Rmu_sc0018885.1_g000001 Rmu_sc0020345.1_g000001 Rmu_sc0027791.1_g000001 Rmu_sc0037325.1_g000001 Rmu_ssc0000010.1_g000024 Rmu_ssc0000010.1_g000025 Rmu_ssc0000083.1_g000021 Rmu_ssc0000340.1_g000002 Rmu_ssc0000386.1_g000002 Rmu_ssc0000386.1_g000024 Rmu_ssc0000386.1_g000025 Rmu_ssc0000386.1_g000034 Rmu_ssc0000386.1_g000037 Rmu_ssc0000477.1_g000001
rosa_roxburghii Rroxscaffold_161G00448010 Rroxscaffold_164G00436080 Rroxscaffold_1G00024500 Rroxscaffold_2G00124290 Rroxscaffold_3G00222940 Rroxscaffold_3G00227440 Rroxscaffold_4G00304810 Rroxscaffold_4G00330180 Rroxscaffold_4G00330200 Rroxscaffold_5G00356620 Rroxscaffold_5G00358170 Rroxscaffold_5G00360880 Rroxscaffold_5G00361220 Rroxscaffold_5G00361950 Rroxscaffold_5G00361960 Rroxscaffold_5G00361990 Rroxscaffold_5G00362370 Rroxscaffold_5G00364540 Rroxscaffold_5G00364550 Rroxscaffold_5G00364580 Rroxscaffold_5G00364600 Rroxscaffold_6G00393290 Rroxscaffold_6G00412680 Rroxscaffold_6G00412790 Rroxscaffold_6G00413470 Rroxscaffold_6G00413720 Rroxscaffold_6G00416070 Rroxscaffold_7G00205400
rosa_rugosa Rorug01G0017300 Rorug01G0017400 Rorug01G0018000 Rorug01G0018100 Rorug01G0211500 Rorug02G0638200 Rorug03G0070000 Rorug03G0071200 Rorug03G0081000 Rorug03G0086500 Rorug03G0089300 Rorug03G0095300 Rorug03G0096000 Rorug03G0096000 Rorug04G0055000 Rorug04G0078300 Rorug04G0104100.1 Rorug04G0113800 Rorug04G0126700 Rorug04G0128000 Rorug04G0145900 Rorug04G0148700 Rorug04G0149100 Rorug04G0149100 Rorug04G0149200 Rorug04G0149300 Rorug04G0154900 Rorug04G0180400 Rorug04G0180500 Rorug04G0180700 Rorug04G0180800 Rorug04G0401500 Rorug04G0402100 Rorug05G0288600 Rorug05G0334100 Rorug07G0176400
rosa_samantha Rh1DG043200 Rh1DG043500 Rh1DG043900 Rh1DG222800 Rh3CG039900 Rh3CG156200 Rh3CG328500 Rh3CG328800 Rh3DG165000 Rh4AG208400 Rh4BG205600 Rh4BG213900 Rh4BG243900 Rh4CG198800 Rh4DG168600 Rh4DG180100 Rh4DG180300 Rh4DG180600 Rh4DG181200 Rh4DG181600 Rh4DG181700 Rh4DG183700 Rh4DG184000 Rh4DG184400 Rh4DG184700 Rh4DG206100 Rh4DG206200 Rh4DG206300 Rh4DG215600 Rh4DG238700 Rh4DG238900 Rh5DG390300
rosa_wichuraiana Rw0G005050 Rw0G009260 Rw0G009280 Rw0G015600 Rw0G023570 Rw1G002140 Rw1G002170 Rw1G002210 Rw1G002240 Rw1G019500 Rw2G015490 Rw3G003020 Rw3G010900 Rw3G012030 Rw3G012790 Rw3G013050 Rw3G013540 Rw3G013640 Rw3G013650 Rw3G026050 Rw3G026070 Rw4G015740 Rw4G015790 Rw4G015910 Rw4G015930 Rw4G015950 Rw4G017900 Rw4G017930 Rw4G018440 Rw4G018450 Rw4G018530 Rw4G020720 Rw4G020760 Rw5G019250 Rw5G034370 Rw7G018700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2385
AccB1I GGYRCC 1 cut(s) 2747
AccI GTMKAC 3 cut(s) 2335, 2551, 2598
AccII CGCG 2 cut(s) 1240, 1291
AciI CCGC 8 cut(s) 98, 634, 1291, 1345, 1931, 2119, 2627, 3075
AclI AACGTT 2 cut(s) 1550, 1583
AclWI GGATC 3 cut(s) 1257, 1783, 2637
AcoI YGGCCR 2 cut(s) 294, 3086
AcuI CTGAAG 1 cut(s) 1899
AcyI GRCGYC 1 cut(s) 1717
AdeI CACNNNGTG 2 cut(s) 2228, 2638
AfaI GTAC 7 cut(s) 15, 466, 813, 1163, 1975, 2359, 2813
AfiI CCNNNNNNNGG 4 cut(s) 167, 454, 720, 2233
AflIII ACRYGT 2 cut(s) 1621, 2870
AhlI ACTAGT 1 cut(s) 1765
AjnI CCWGG 4 cut(s) 93, 375, 1493, 2416
AjuI GAANNNNNNNTTGG 6 cut(s) 665, 697, 1638, 1670, 2508, 2540
Alw21I GWGCWC 1 cut(s) 2766
Alw26I GTCTC 8 cut(s) 190, 1236, 1612, 1788, 2090, 2160, 2440, 2838
AlwI GGATC 3 cut(s) 1257, 1783, 2637
AlwNI CAGNNNCTG 1 cut(s) 2836
Ama87I CYCGRG 2 cut(s) 2007, 2258
AoxI GGCC 5 cut(s) 294, 2560, 2819, 3076, 3086
ApeKI GCWGC 1 cut(s) 2710
ArsI GACNNNNNNTTYG 2 cut(s) 2580, 2612
AseI ATTAAT 1 cut(s) 653
Asp700I GAANNNNTTC 2 cut(s) 1317, 1421
AspA2I CCTAGG 1 cut(s) 1589
AspLEI GCGC 2 cut(s) 1291, 3065
AspS9I GGNCC 7 cut(s) 711, 1039, 1369, 1870, 2414, 2788, 3077
AsuC2I CCSGG 1 cut(s) 609
AsuHPI GGTGA 1 cut(s) 737
AvaI CYCGRG 2 cut(s) 2007, 2258
AvaII GGWCC 6 cut(s) 711, 1039, 1369, 1870, 2414, 2788
AvrII CCTAGG 1 cut(s) 1589
BalI TGGCCA 1 cut(s) 3088
BanI GGYRCC 1 cut(s) 2747
BanII GRGCYC 3 cut(s) 690, 2349, 2766
BbsI GAAGAC 3 cut(s) 233, 2271, 2357
Bbv12I GWGCWC 1 cut(s) 2766
BbvCI CCTCAGC 2 cut(s) 555, 2841
BbvI GCAGC 1 cut(s) 2697
BccI CCATC 6 cut(s) 55, 1045, 1249, 2315, 2800, 2888
BceAI ACGGC 1 cut(s) 281
BcgI CGANNNNNNTGC 2 cut(s) 2239, 2273
BciT130I CCWGG 4 cut(s) 95, 377, 1495, 2418
BciVI GTATCC 1 cut(s) 409
BclI TGATCA 1 cut(s) 1608
BcnI CCSGG 1 cut(s) 609
BcoDI GTCTC 8 cut(s) 190, 1236, 1612, 1788, 2090, 2160, 2440, 2838
BcuI ACTAGT 1 cut(s) 1765
BfaI CTAG 9 cut(s) 758, 884, 1152, 1374, 1590, 1736, 1766, 2126, 3026
BfuI GTATCC 1 cut(s) 409
BisI GCNGC 4 cut(s) 1931, 2119, 2711, 3076
BlnI CCTAGG 1 cut(s) 1589
BlsI GCNGC 4 cut(s) 1932, 2120, 2712, 3077
Bme1390I CCNGG 5 cut(s) 95, 377, 609, 1495, 2418
Bme18I GGWCC 6 cut(s) 711, 1039, 1369, 1870, 2414, 2788
BmeT110I CYCGRG 2 cut(s) 2007, 2258
BmgT120I GGNCC 7 cut(s) 711, 1039, 1369, 1870, 2414, 2788, 3077
BmiI GGNNCC 8 cut(s) 689, 1371, 1871, 1872, 2348, 2415, 2749, 2790
BmrFI CCNGG 5 cut(s) 95, 377, 609, 1495, 2418
BmrI ACTGGG 2 cut(s) 2146, 2481
BmuI ACTGGG 2 cut(s) 2146, 2481
BpiI GAAGAC 3 cut(s) 233, 2271, 2357
BplI GAGNNNNNCTC 2 cut(s) 1990, 2022
BpmI CTGGAG 4 cut(s) 1910, 2495, 2813, 2921
Bpu10I CCTNAGC 3 cut(s) 555, 2823, 2841
BpuEI CTTGAG 9 cut(s) 89, 172, 1041, 1292, 1495, 1636, 1972, 2114, 2180
BpuMI CCSGG 1 cut(s) 609
Bsa29I ATCGAT 1 cut(s) 2539
BsaBI GATNNNNATC 1 cut(s) 765
BsaHI GRCGYC 1 cut(s) 1717
BsaJI CCNNGG 5 cut(s) 93, 1589, 2417, 2703, 3066
Bsc4I CCNNNNNNNGG 4 cut(s) 167, 454, 720, 2233
Bse118I RCCGGY 1 cut(s) 806
Bse1I ACTGG 5 cut(s) 2152, 2361, 2487, 2598, 2830
Bse3DI GCAATG 4 cut(s) 243, 986, 1815, 2461
Bse8I GATNNNNATC 1 cut(s) 765
BseBI CCWGG 4 cut(s) 95, 377, 1495, 2418
BseCI ATCGAT 1 cut(s) 2539
BseDI CCNNGG 5 cut(s) 93, 1589, 2417, 2703, 3066
BseJI GATNNNNATC 1 cut(s) 765
BseLI CCNNNNNNNGG 4 cut(s) 167, 454, 720, 2233
BseMI GCAATG 4 cut(s) 243, 986, 1815, 2461
BseMII CTCAG 4 cut(s) 546, 2330, 2855, 3104
BseNI ACTGG 5 cut(s) 2152, 2361, 2487, 2598, 2830
BseRI GAGGAG 3 cut(s) 932, 1454, 2177
BseXI GCAGC 1 cut(s) 2697
BsgI GTGCAG 2 cut(s) 2557, 2696
Bsh1236I CGCG 2 cut(s) 1240, 1291
Bsh1285I CGRYCG 3 cut(s) 1349, 2539, 2991
BshFI GGCC 5 cut(s) 296, 2562, 2821, 3078, 3088
BshNI GGYRCC 1 cut(s) 2747
BshVI ATCGAT 1 cut(s) 2539
BsiEI CGRYCG 3 cut(s) 1349, 2539, 2991
BsiHKAI GWGCWC 1 cut(s) 2766
BsiHKCI CYCGRG 2 cut(s) 2007, 2258
BsiSI CCGG 2 cut(s) 609, 807
BslFI GGGAC 7 cut(s) 76, 430, 676, 1355, 1856, 2774, 3027
BslI CCNNNNNNNGG 4 cut(s) 167, 454, 720, 2233
BsmAI GTCTC 8 cut(s) 190, 1236, 1612, 1788, 2090, 2160, 2440, 2838
BsmBI CGTCTC 2 cut(s) 190, 2440
BsmFI GGGAC 7 cut(s) 76, 430, 676, 1355, 1856, 2774, 3027
BsmI GAATGC 1 cut(s) 1217
BsnI GGCC 5 cut(s) 296, 2562, 2821, 3078, 3088
BsoBI CYCGRG 2 cut(s) 2007, 2258
Bsp1286I GDGCHC 3 cut(s) 690, 2349, 2766
Bsp1407I TGTACA 1 cut(s) 464
BspACI CCGC 8 cut(s) 98, 634, 1291, 1345, 1931, 2119, 2627, 3075
BspANI GGCC 5 cut(s) 296, 2562, 2821, 3078, 3088
BspCNI CTCAG 4 cut(s) 547, 2331, 2854, 3105
BspDI ATCGAT 1 cut(s) 2539
BspFNI CGCG 2 cut(s) 1240, 1291
BspLI GGNNCC 8 cut(s) 689, 1371, 1871, 1872, 2348, 2415, 2749, 2790
BspPI GGATC 3 cut(s) 1257, 1783, 2637
BspQI GCTCTTC 2 cut(s) 2487, 2913
BspT107I GGYRCC 1 cut(s) 2747
BsrDI GCAATG 4 cut(s) 243, 986, 1815, 2461
BsrFI RCCGGY 1 cut(s) 806
BsrGI TGTACA 1 cut(s) 464
BsrI ACTGG 5 cut(s) 2152, 2361, 2487, 2598, 2830
BssAI RCCGGY 1 cut(s) 806
BssECI CCNNGG 5 cut(s) 93, 1589, 2417, 2703, 3066
BssNAI GTATAC 2 cut(s) 2336, 2552
BssNI GRCGYC 1 cut(s) 1717
BssT1I CCWWGG 3 cut(s) 1589, 2703, 3066
Bst1107I GTATAC 2 cut(s) 2336, 2552
Bst2UI CCWGG 4 cut(s) 95, 377, 1495, 2418
Bst4CI ACNGT 9 cut(s) 184, 232, 966, 1166, 2101, 2282, 2946, 2989, 3039
Bst6I CTCTTC 5 cut(s) 509, 909, 1152, 2487, 2913
BstACI GRCGYC 1 cut(s) 1717
BstAUI TGTACA 1 cut(s) 464
BstC8I GCNNGC 3 cut(s) 863, 1532, 2648
BstDEI CTNAG 7 cut(s) 130, 555, 2339, 2450, 2823, 2841, 3113
BstFNI CGCG 2 cut(s) 1240, 1291
BstHHI GCGC 2 cut(s) 1291, 3065
BstMAI GTCTC 8 cut(s) 190, 1236, 1612, 1788, 2090, 2160, 2440, 2838
BstMCI CGRYCG 3 cut(s) 1349, 2539, 2991
BstMWI GCNNNNNNNGC 3 cut(s) 95, 1214, 1288
BstNI CCWGG 4 cut(s) 95, 377, 1495, 2418
BstNSI RCATGY 2 cut(s) 1286, 1625
BstSCI CCNGG 5 cut(s) 93, 375, 607, 1493, 2416
BstUI CGCG 2 cut(s) 1240, 1291
BstV1I GCAGC 1 cut(s) 2697
BstV2I GAAGAC 3 cut(s) 233, 2271, 2357
BstXI CCANNNNNNTGG 1 cut(s) 2593
BstZ17I GTATAC 2 cut(s) 2336, 2552
Bsu15I ATCGAT 1 cut(s) 2539
BsuI GTATCC 1 cut(s) 409
BsuRI GGCC 5 cut(s) 296, 2562, 2821, 3078, 3088
BsuTUI ATCGAT 1 cut(s) 2539
BtgZI GCGATG 2 cut(s) 465, 2334
BtsI GCAGTG 1 cut(s) 643
BtsIMutI CAGTG 3 cut(s) 237, 643, 2106
Cac8I GCNNGC 3 cut(s) 863, 1532, 2648
CaiI CAGNNNCTG 1 cut(s) 2836
CfoI GCGC 2 cut(s) 1291, 3065
Cfr10I RCCGGY 1 cut(s) 806
Cfr13I GGNCC 7 cut(s) 711, 1039, 1369, 1870, 2414, 2788, 3077
ClaI ATCGAT 1 cut(s) 2539
CseI GACGC 3 cut(s) 78, 1246, 1706
Csp6I GTAC 7 cut(s) 14, 465, 812, 1162, 1974, 2358, 2812
CspCI CAANNNNNGTGG 2 cut(s) 1291, 1326
CviAII CATG 8 cut(s) 928, 1199, 1283, 1569, 1622, 1989, 2604, 3020
CviQI GTAC 7 cut(s) 14, 465, 812, 1162, 1974, 2358, 2812
DdeI CTNAG 7 cut(s) 130, 555, 2339, 2450, 2823, 2841, 3113
DraI TTTAAA 3 cut(s) 1399, 1699, 2277
DraIII CACNNNGTG 2 cut(s) 2228, 2638
EaeI YGGCCR 2 cut(s) 294, 3086
Eam1104I CTCTTC 5 cut(s) 509, 909, 1152, 2487, 2913
EarI CTCTTC 5 cut(s) 509, 909, 1152, 2487, 2913
EciI GGCGGA 1 cut(s) 2642
Ecl136II GAGCTC 1 cut(s) 2764
Eco130I CCWWGG 3 cut(s) 1589, 2703, 3066
Eco24I GRGCYC 3 cut(s) 690, 2349, 2766
Eco32I GATATC 3 cut(s) 241, 1064, 2619
Eco47I GGWCC 6 cut(s) 711, 1039, 1369, 1870, 2414, 2788
Eco53kI GAGCTC 1 cut(s) 2764
Eco57I CTGAAG 1 cut(s) 1899
Eco88I CYCGRG 2 cut(s) 2007, 2258
EcoICRI GAGCTC 1 cut(s) 2764
EcoO109I RGGNCCY 4 cut(s) 1369, 1870, 2414, 2788
EcoRI GAATTC 2 cut(s) 1317, 1964
EcoRII CCWGG 4 cut(s) 93, 375, 1493, 2416
EcoRV GATATC 3 cut(s) 241, 1064, 2619
EcoT14I CCWWGG 3 cut(s) 1589, 2703, 3066
EcoT38I GRGCYC 3 cut(s) 690, 2349, 2766
ErhI CCWWGG 3 cut(s) 1589, 2703, 3066
Esp3I CGTCTC 2 cut(s) 190, 2440
FaeI CATG 8 cut(s) 931, 1202, 1286, 1572, 1625, 1992, 2607, 3023
FalI AAGNNNNNCTT 2 cut(s) 2185, 2217
FaqI GGGAC 7 cut(s) 76, 430, 676, 1355, 1856, 2774, 3027
FatI CATG 8 cut(s) 927, 1198, 1282, 1568, 1621, 1988, 2603, 3019
FauI CCCGC 1 cut(s) 641
FbaI TGATCA 1 cut(s) 1608
FblI GTMKAC 3 cut(s) 2335, 2551, 2598
Fnu4HI GCNGC 4 cut(s) 1931, 2119, 2711, 3076
FriOI GRGCYC 3 cut(s) 690, 2349, 2766
Fsp4HI GCNGC 4 cut(s) 1931, 2119, 2711, 3076
FspBI CTAG 9 cut(s) 758, 884, 1152, 1374, 1590, 1736, 1766, 2126, 3026
GlaI GCGC 2 cut(s) 1290, 3064
GluI GCNGC 4 cut(s) 1931, 2119, 2711, 3076
GsuI CTGGAG 4 cut(s) 1910, 2495, 2813, 2921
HaeIII GGCC 5 cut(s) 296, 2562, 2821, 3078, 3088
HapII CCGG 2 cut(s) 609, 807
HgaI GACGC 3 cut(s) 78, 1246, 1706
HhaI GCGC 2 cut(s) 1291, 3065
Hin1I GRCGYC 1 cut(s) 1717
Hin1II CATG 8 cut(s) 931, 1202, 1286, 1572, 1625, 1992, 2607, 3023
Hin6I GCGC 2 cut(s) 1289, 3063
HinP1I GCGC 2 cut(s) 1289, 3063
HincII GTYRAC 1 cut(s) 2599
HindII GTYRAC 1 cut(s) 2599
HindIII AAGCTT 3 cut(s) 190, 1231, 1948
HpaII CCGG 2 cut(s) 609, 807
HphI GGTGA 1 cut(s) 737
Hpy166II GTNNAC 6 cut(s) 368, 812, 1406, 2336, 2552, 2599
Hpy188I TCNGA 8 cut(s) 238, 435, 766, 1254, 2211, 2677, 2973, 3114
Hpy8I GTNNAC 6 cut(s) 368, 812, 1406, 2336, 2552, 2599
Hpy99I CGWCG 1 cut(s) 1637
HpyAV CCTTC 8 cut(s) 4, 167, 213, 777, 1913, 2097, 2143, 2761
HpyCH4III ACNGT 9 cut(s) 184, 232, 966, 1166, 2101, 2282, 2946, 2989, 3039
HpyCH4IV ACGT 5 cut(s) 414, 1083, 1550, 1583, 2872
HpyF10VI GCNNNNNNNGC 3 cut(s) 95, 1214, 1288
HpyF3I CTNAG 7 cut(s) 130, 555, 2339, 2450, 2823, 2841, 3113
HpySE526I ACGT 5 cut(s) 414, 1083, 1550, 1583, 2872
Hsp92I GRCGYC 1 cut(s) 1717
Hsp92II CATG 8 cut(s) 931, 1202, 1286, 1572, 1625, 1992, 2607, 3023
HspAI GCGC 2 cut(s) 1289, 3063
KflI GGGWCCC 1 cut(s) 1870
Ksp22I TGATCA 1 cut(s) 1608
LguI GCTCTTC 2 cut(s) 2487, 2913
LmnI GCTCC 5 cut(s) 567, 610, 693, 2352, 2832
Lsp1109I GCAGC 1 cut(s) 2697
MaeI CTAG 9 cut(s) 758, 884, 1152, 1374, 1590, 1736, 1766, 2126, 3026
MaeII ACGT 5 cut(s) 414, 1083, 1550, 1583, 2872
MaeIII GTNAC 4 cut(s) 625, 1379, 2011, 3136
MfeI CAATTG 1 cut(s) 1455
MhlI GDGCHC 3 cut(s) 690, 2349, 2766
MlsI TGGCCA 1 cut(s) 3088
MluNI TGGCCA 1 cut(s) 3088
MlyI GAGTC 5 cut(s) 269, 452, 1666, 1917, 2594
MmeI TCCRAC 2 cut(s) 216, 426
Mox20I TGGCCA 1 cut(s) 3088
MroXI GAANNNNTTC 2 cut(s) 1317, 1421
MscI TGGCCA 1 cut(s) 3088
Msp20I TGGCCA 1 cut(s) 3088
MspA1I CMGCKG 1 cut(s) 3075
MspI CCGG 2 cut(s) 609, 807
MspR9I CCNGG 5 cut(s) 95, 377, 609, 1495, 2418
MunI CAATTG 1 cut(s) 1455
Mva1269I GAATGC 1 cut(s) 1217
MvaI CCWGG 4 cut(s) 95, 377, 1495, 2418
MvnI CGCG 2 cut(s) 1240, 1291
MwoI GCNNNNNNNGC 3 cut(s) 95, 1214, 1288
NciI CCSGG 1 cut(s) 609
NlaIII CATG 8 cut(s) 931, 1202, 1286, 1572, 1625, 1992, 2607, 3023
NlaIV GGNNCC 8 cut(s) 689, 1371, 1871, 1872, 2348, 2415, 2749, 2790
NmuCI GTSAC 1 cut(s) 3136
NspI RCATGY 2 cut(s) 1286, 1625
PaeR7I CTCGAG 2 cut(s) 2007, 2258
PciI ACATGT 1 cut(s) 1621
PciSI GCTCTTC 2 cut(s) 2487, 2913
PcsI WCGNNNNNNNCGW 2 cut(s) 2604, 3043
PctI GAATGC 1 cut(s) 1217
PdmI GAANNNNTTC 2 cut(s) 1317, 1421
PfeI GAWTC 9 cut(s) 268, 424, 761, 1276, 2003, 2129, 2325, 2768, 2968
PflFI GACNNNGTC 4 cut(s) 232, 1037, 2407, 3039
PfoI TCCNGGA 3 cut(s) 375, 607, 1493
PkrI GCNGC 4 cut(s) 1932, 2120, 2712, 3077
Ple19I CGATCG 1 cut(s) 2539
PleI GAGTC 5 cut(s) 268, 451, 1666, 1917, 2594
PpsI GAGTC 5 cut(s) 268, 451, 1666, 1917, 2594
PpuMI RGGWCCY 4 cut(s) 1369, 1870, 2414, 2788
PscI ACATGT 1 cut(s) 1621
PshBI ATTAAT 1 cut(s) 653
PsiI TTATAA 1 cut(s) 2385
Psp124BI GAGCTC 1 cut(s) 2766
Psp1406I AACGTT 2 cut(s) 1550, 1583
Psp5II RGGWCCY 4 cut(s) 1369, 1870, 2414, 2788
Psp6I CCWGG 4 cut(s) 93, 375, 1493, 2416
PspGI CCWGG 4 cut(s) 93, 375, 1493, 2416
PspN4I GGNNCC 8 cut(s) 689, 1371, 1871, 1872, 2348, 2415, 2749, 2790
PspPI GGNCC 7 cut(s) 711, 1039, 1369, 1870, 2414, 2788, 3077
PspPPI RGGWCCY 4 cut(s) 1369, 1870, 2414, 2788
PsrI GAACNNNNNNTAC 2 cut(s) 736, 768
PstNI CAGNNNCTG 1 cut(s) 2836
PsyI GACNNNGTC 4 cut(s) 232, 1037, 2407, 3039
PvuI CGATCG 1 cut(s) 2539
RsaI GTAC 7 cut(s) 15, 466, 813, 1163, 1975, 2359, 2813
RsaNI GTAC 7 cut(s) 14, 465, 812, 1162, 1974, 2358, 2812
SacI GAGCTC 1 cut(s) 2766
SalI GTCGAC 1 cut(s) 2597
SapI GCTCTTC 2 cut(s) 2487, 2913
SatI GCNGC 4 cut(s) 1931, 2119, 2711, 3076
Sau96I GGNCC 7 cut(s) 711, 1039, 1369, 1870, 2414, 2788, 3077
SchI GAGTC 5 cut(s) 269, 452, 1666, 1917, 2594
ScrFI CCNGG 5 cut(s) 95, 377, 609, 1495, 2418
SduI GDGCHC 3 cut(s) 690, 2349, 2766
Sfr274I CTCGAG 2 cut(s) 2007, 2258
SinI GGWCC 6 cut(s) 711, 1039, 1369, 1870, 2414, 2788
SlaI CTCGAG 2 cut(s) 2007, 2258
SpeI ACTAGT 1 cut(s) 1765
SsiI CCGC 8 cut(s) 98, 634, 1291, 1345, 1931, 2119, 2627, 3075
SspI AATATT 5 cut(s) 345, 1112, 1120, 2114, 2696
SspMI CTAG 9 cut(s) 758, 884, 1152, 1374, 1590, 1736, 1766, 2126, 3026
SstI GAGCTC 1 cut(s) 2766
StyD4I CCNGG 5 cut(s) 93, 375, 607, 1493, 2416
StyI CCWWGG 3 cut(s) 1589, 2703, 3066
TaaI ACNGT 9 cut(s) 184, 232, 966, 1166, 2101, 2282, 2946, 2989, 3039
TaiI ACGT 5 cut(s) 417, 1086, 1553, 1586, 2875
TaqII GACCGA 1 cut(s) 922
TatI WGTACW 2 cut(s) 464, 1161
TauI GCSGC 3 cut(s) 1933, 2121, 3078
TfiI GAWTC 9 cut(s) 268, 424, 761, 1276, 2003, 2129, 2325, 2768, 2968
TscAI CASTG 3 cut(s) 237, 643, 2106
TseFI GTSAC 1 cut(s) 3136
TseI GCWGC 1 cut(s) 2710
Tsp45I GTSAC 1 cut(s) 3136
TspDTI ATGAA 8 cut(s) 17, 112, 564, 927, 1122, 1764, 1826, 2133
TspGWI ACGGA 6 cut(s) 185, 593, 1423, 2012, 2216, 2285
TspRI CASTG 3 cut(s) 237, 643, 2106
Tth111I GACNNNGTC 4 cut(s) 232, 1037, 2407, 3039
VpaK11BI GGWCC 6 cut(s) 711, 1039, 1369, 1870, 2414, 2788
VspI ATTAAT 1 cut(s) 653
XbaI TCTAGA 4 cut(s) 757, 883, 2125, 3025
XceI RCATGY 2 cut(s) 1286, 1625
XcmI CCANNNNNNNNNTGG 1 cut(s) 1087
XhoI CTCGAG 2 cut(s) 2007, 2258
XmaJI CCTAGG 1 cut(s) 1589
XmiI GTMKAC 3 cut(s) 2335, 2551, 2598
XmnI GAANNNNTTC 2 cut(s) 1317, 1421
XspI CTAG 9 cut(s) 758, 884, 1152, 1374, 1590, 1736, 1766, 2126, 3026
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.