Rorug03G0086500

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
6700518 .. 6706025
5508 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0086500.1

Sequence Viewer

Length: 1965 bp
ATGATGCAAGGTCAATCCAGTAGAGCTAGAAAGAGTCCAACTTTTAACAGCTTACCATCTCACACCCCCAAGAATCGAGATAGAGATTTAGGAAATGGAACCAATGGGAAGATGGGGAAATTTGGGTCTGTGGACTCTGTGATGGATGAAATTCCATTGTCGGTGCCATCTGTTGAAATGGGTTTGAGTGACGATGATGACATGTTGCCTTGGTTGAATTATGCCCTTGATCAACCTTTACAACATGAATATAGCCATGATTTTATGCCTGAAATATCTGGTGTCAATGCAAATGAGATTTCCACCAATGGCAATCTCGCATCAATCGAGAAAAGGAGTAGTTCTAGTCAGATATATAGGGAGTGCAGCCCCAATTCTACCCATGGAGGTGCTCTTTTGGAACAAAGGAATGTATCAAAGCTTTCTTCAATAAGTGCTGCTGAGGTTAGCAGACCCAGAACTAGTACTACTCACTTATACCAGATGTCATCACAGCAATCCCAAGCATCAATTCCATCTTTTAGATCAATCGCTTCGGATATGGTTGCTGTTAACACAAGTAGTGCCGACCATCATGCTGTTTGCAAGAATTCAATTCAGGCTTCACCTGCAGGTGGTTTTCCTGGCATAATAACGCAGAAGCAAAATCCACCAACTCCTAGTAATAATAATTCAACCATAGTGAACTTTTCCCATTTCTCACGACCAGCTACTCTTGCAAAAGCCAATCTTCACAATAATGGTGCAACGTCTAGCTCGAGTTTAGTAAGGGTGGAAAAGATTGGAAATAAGGATAAGGTTTCAGTTGCAACTAGTAGCAATCCTCCTGAGTCGATACTAATCGAATCAAGCTGCAGTTTACTGAAGGAGTCAACTTCACAGTGCCAAGATGTTATGGCCCCCTCCAGTGTTGATATGAAACCAACCGCATCTAAGCCTCTTGAGGAACCACGTACTACTAAACAGTCTGAGGCTGCATATCAAGAGGATGCCTCTAAGAATGATGACACAAACTCCAATCATATTCCTTGTGAAAGCGCAATTAGGGCACTTCCAGATGCTGAAAAAACTACAGAGCCTGTGGTTGCTTCTTCTGTTTGCTCAGGCAATAGTGTGGACAAAGCTTCAGATGATCCAGCTCGTGCGTTGAAGAGAAAATCTCGTGATACTGATGACTCTGAATGCCATAGTGAAGATGTAGAGGAAGAATCTGTGGGCGTGAAAAAGGTAGCTCACGGTCGAGGTACAGGTTCCAAGAGAAGCAGAGCAGCAGAAGTGCATAACTTATCAGAAAGGAGGCGAAGGGATAGAATCAATGAAAAGATGCGGGCGCTTCAAGAACTCATACCTAATTGCAATAAGGTGGACAAAGCTTCAATGCTTGATGAGGCCATTGAGTATTTGAAGACACTTCAACTCCAAGTACAGATTATGTCGATGGGAGCTGGTTTGTATATGCCACAAATGATGTTACCACCAGGAATGCAACACATGCATGCACCCCGTATGGCTCATTTCTCGCACATGGGTGTTGGAATGGGAATGGGAATGGGATTGGGCATGGGTTTTGGGATGGGTATGCCTGACATGAATGGTGGATCTTCTGGTTACCCTATGCTTCAGGTGCCTCCTATGCAAGGTGCACATTTTCCTGGTTCACCAATGTCAGGGCATACTGCGTTCAATGGGATGGTAGGAGCTAACCTTCAGATGTTTGGGCTTCCTGGTCAAGGAGTTCCCTTACCGATGCAACGCGCACCCTTAGTTCCCGTATCTGGAGGGCCCTTTATGAAGTCAGCTGTACGACCAAATGGTTGTGGTGCCGGAGGTCCTGTAGAACCAGCTCAAGCTTCTAGTTCAAAGGATTCAGTGCAGAACATGAACTCTCAAGTGATGCAAAACACCAACACCAATAGCTCCATGAATCAGACTTCTAATCAGGTTGTTGCATTTACCATGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

654

Amino Acids

69.99

Weight (kDa)

6.56

Isoelectric Point (pI)

54.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 425 - 472 8.4e-14 Helix-loop-helix DNA-binding domain
bHLH_SAC51 PF23173 431 - 474 2.6e-07 Transcription factor SAC51 bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000029)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13530 FvH4_4g18270 FvH4_6g12200 FvH4_6g12460 FvH4_6g12461 FvH4_6g13450 FvH4_6g15090 FvH4_6g15220 FvH4_6g15230 FvH4_6g15250 FvH4_6g15251 FvH4_6g15340 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47980 FvH4_6g47980 FvH4_6g47980 FvH4_6g48170 FvH4_6g48310 FvH4_6g48310 FvH4_6g48850 FvH4_6g48881 FvH4_7g11830
malus_domestica MD02G1059900.v1.1 MD02G1069600.v1.1 MD02G1069700.v1.1 MD02G1070100.v1.1 MD02G1070200.v1.1 MD02G1070300.v1.1 MD02G1070800.v1.1 MD02G1070900.v1.1 MD02G1071200.v1.1 MD02G1071400.v1.1 MD02G1071900.v1.1 MD02G1075200.v1.1 MD03G1048000.v1.1 MD03G1049100.v1.1 MD03G1049200.v1.1 MD03G1052500.v1.1 MD03G1054100.v1.1 MD03G1054300.v1.1 MD03G1054400.v1.1 MD04G1113400.v1.1 MD04G1211100.v1.1 MD04G1211200.v1.1 MD05G1174900.v1.1 MD05G1175000.v1.1 MD05G1175900.v1.1 MD05G1243400.v1.1 MD07G1031500.v1.1 MD07G1031600.v1.1 MD07G1032500.v1.1 MD11G1046800.v1.1 MD11G1046900.v1.1 MD11G1047000.v1.1 MD11G1050400.v1.1 MD11G1050600.v1.1 MD11G1050800.v1.1 MD11G1051100.v1.1 MD11G1051600.v1.1 MD11G1051700.v1.1 MD11G1054600.v1.1 MD11G1055600.v1.1 MD11G1055700.v1.1 MD11G1055800.v1.1 MD11G1056000.v1.1 MD12G1126600.v1.1 MD12G1126700.v1.1 MD12G1126800.v1.1 MD12G1127300.v1.1 MD12G1127600.v1.1 MD12G1127900.v1.1 MD12G1128100.v1.1 MD12G1128300.v1.1 MD15G1261500.v1.1
prunus_persica Prupe.1G010700_v2.0.a1 Prupe.1G010800_v2.0.a1 Prupe.1G011000_v2.0.a1 Prupe.1G159600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163700_v2.0.a1 Prupe.1G163700_v2.0.a1 Prupe.1G163800_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G235500_v2.0.a1 Prupe.2G067400_v2.0.a1 Prupe.2G067500_v2.0.a1 Prupe.2G111700_v2.0.a1 Prupe.2G111800_v2.0.a1 Prupe.3G012000_v2.0.a1 Prupe.6G243400_v2.0.a1 Prupe.6G243500_v2.0.a1 Prupe.6G243600_v2.0.a1 Prupe.6G243700_v2.0.a1 Prupe.6G243800_v2.0.a1 Prupe.6G243900_v2.0.a1
pyrus_communis pycom02g04860 pycom02g04880 pycom02g04890 pycom02g05510 pycom02g05520 pycom02g05600 pycom02g05930 pycom02g06000 pycom02g06010 pycom03g03800 pycom03g03860 pycom03g03880 pycom03g03890 pycom03g03910 pycom03g03920 pycom03g04200 pycom03g04290 pycom03g04300 pycom03g04310 pycom03g04320 pycom03g09260 pycom04g10150 pycom04g10160 pycom04g10170 pycom05g16180 pycom05g16190 pycom05g16240 pycom05g21980 pycom05g21990 pycom07g02280 pycom11g03800 pycom11g03810 pycom11g04080 pycom11g04140 pycom11g04150 pycom11g04160 pycom11g04570 pycom11g04580 pycom11g04590 pycom11g04610 pycom12g12470 pycom12g12490 pycom13g22050
rosa_chinensis RchiOBHm_Chr1g0317761 RchiOBHm_Chr1g0317821 RchiOBHm_Chr1g0317831 RchiOBHm_Chr1g0317871 RchiOBHm_Chr1g0350501 RchiOBHm_Chr2g0107631 RchiOBHm_Chr3g0452091 RchiOBHm_Chr3g0464001 RchiOBHm_Chr3g0464281 RchiOBHm_Chr3g0466331 RchiOBHm_Chr3g0467341 RchiOBHm_Chr3g0467381 RchiOBHm_Chr3g0467731 RchiOBHm_Chr3g0468291 RchiOBHm_Chr3g0468321 RchiOBHm_Chr3g0468341 RchiOBHm_Chr3g0468391 RchiOBHm_Chr3g0468411 RchiOBHm_Chr3g0468571 RchiOBHm_Chr3g0468591 RchiOBHm_Chr3g0490721 RchiOBHm_Chr3g0490751 RchiOBHm_Chr3g0490761 RchiOBHm_Chr3g0490771 RchiOBHm_Chr3g0490951 RchiOBHm_Chr3g0491001 RchiOBHm_Chr3g0491011 RchiOBHm_Chr4g0412461 RchiOBHm_Chr4g0414161 RchiOBHm_Chr4g0414181 RchiOBHm_Chr4g0414191 RchiOBHm_Chr4g0414281 RchiOBHm_Chr4g0414441 RchiOBHm_Chr4g0414521 RchiOBHm_Chr4g0414531 RchiOBHm_Chr4g0417011 RchiOBHm_Chr4g0417021 RchiOBHm_Chr4g0417041 RchiOBHm_Chr4g0417071 RchiOBHm_Chr4g0417101 RchiOBHm_Chr4g0417531 RchiOBHm_Chr4g0417641 RchiOBHm_Chr4g0417651 RchiOBHm_Chr4g0417701 RchiOBHm_Chr4g0417731 RchiOBHm_Chr4g0417741 RchiOBHm_Chr4g0417781 RchiOBHm_Chr4g0418751 RchiOBHm_Chr4g0418791 RchiOBHm_Chr4g0418861 RchiOBHm_Chr4g0418881 RchiOBHm_Chr4g0418901 RchiOBHm_Chr4g0422451 RchiOBHm_Chr4g0422461 RchiOBHm_Chr4g0422471 RchiOBHm_Chr4g0422541 RchiOBHm_Chr4g0422561 RchiOBHm_Chr4g0422591 RchiOBHm_Chr4g0422651 RchiOBHm_Chr4g0422661 RchiOBHm_Chr5g0003251 RchiOBHm_Chr5g0003261 RchiOBHm_Chr5g0055871 RchiOBHm_Chr7g0204701 RchiOBHm_Chr7g0204741
rosa_laevigata RLG00000007607 RLG00000007932 RLG00000017606 RLG00000024418 RLG00000025629 RLG00000030586
rosa_multiflora Rmu_co7959167.1_g000001 Rmu_co8021330.1_g000001 Rmu_co8132128.1_g000001 Rmu_co8224744.1_g000001 Rmu_co8281865.1_g000001 Rmu_co8298487.1_g000001 Rmu_co8319035.1_g000001 Rmu_co8380035.1_g000001 Rmu_co8385371.1_g000001 Rmu_co8398173.1_g000001 Rmu_co8423363.1_g000001 Rmu_co8438275.1_g000001 Rmu_co8474729.1_g000001 Rmu_sc0000057.1_g000008 Rmu_sc0000350.1_g000023 Rmu_sc0000480.1_g000005 Rmu_sc0000654.1_g000021 Rmu_sc0000654.1_g000029 Rmu_sc0000654.1_g000032 Rmu_sc0000654.1_g000041 Rmu_sc0000654.1_g000045 Rmu_sc0000772.1_g000002 Rmu_sc0000772.1_g000041 Rmu_sc0000808.1_g000040 Rmu_sc0000830.1_g000062 Rmu_sc0000830.1_g000065 Rmu_sc0000830.1_g000072 Rmu_sc0000830.1_g000073 Rmu_sc0000935.1_g000020 Rmu_sc0000935.1_g000024 Rmu_sc0000935.1_g000026 Rmu_sc0000935.1_g000027 Rmu_sc0000935.1_g000031 Rmu_sc0000935.1_g000033 Rmu_sc0000962.1_g000033 Rmu_sc0000962.1_g000036 Rmu_sc0000962.1_g000063 Rmu_sc0000962.1_g000064 Rmu_sc0000962.1_g000065 Rmu_sc0001029.1_g000007 Rmu_sc0001063.1_g000014 Rmu_sc0001149.1_g000010 Rmu_sc0001149.1_g000011 Rmu_sc0001358.1_g000009 Rmu_sc0001448.1_g000003 Rmu_sc0001448.1_g000004 Rmu_sc0001729.1_g000005 Rmu_sc0001729.1_g000007 Rmu_sc0001729.1_g000020 Rmu_sc0001729.1_g000023 Rmu_sc0001793.1_g000015 Rmu_sc0002494.1_g000018 Rmu_sc0002494.1_g000019 Rmu_sc0002604.1_g000022 Rmu_sc0002922.1_g000011 Rmu_sc0003008.1_g000009 Rmu_sc0003221.1_g000061 Rmu_sc0003221.1_g000062 Rmu_sc0003459.1_g000014 Rmu_sc0003480.1_g000015 Rmu_sc0003541.1_g000016 Rmu_sc0003541.1_g000020 Rmu_sc0004035.1_g000001 Rmu_sc0004035.1_g000005 Rmu_sc0004035.1_g000011 Rmu_sc0004142.1_g000004 Rmu_sc0004142.1_g000010 Rmu_sc0004353.1_g000008 Rmu_sc0004616.1_g000009 Rmu_sc0004616.1_g000010 Rmu_sc0005231.1_g000004 Rmu_sc0006380.1_g000025 Rmu_sc0006492.1_g000010 Rmu_sc0006895.1_g000001 Rmu_sc0006895.1_g000002 Rmu_sc0006895.1_g000005 Rmu_sc0007034.1_g000004 Rmu_sc0007104.1_g000006 Rmu_sc0008990.1_g000003 Rmu_sc0008990.1_g000004 Rmu_sc0009106.1_g000003 Rmu_sc0009516.1_g000002 Rmu_sc0009516.1_g000003 Rmu_sc0009516.1_g000004 Rmu_sc0009516.1_g000005 Rmu_sc0009645.1_g000001 Rmu_sc0010274.1_g000001 Rmu_sc0010274.1_g000002 Rmu_sc0010419.1_g000003 Rmu_sc0010917.1_g000017 Rmu_sc0011213.1_g000001 Rmu_sc0011228.1_g000007 Rmu_sc0011538.1_g000011 Rmu_sc0011538.1_g000014 Rmu_sc0011538.1_g000015 Rmu_sc0012211.1_g000006 Rmu_sc0012351.1_g000003 Rmu_sc0012351.1_g000005 Rmu_sc0012915.1_g000002 Rmu_sc0013088.1_g000001 Rmu_sc0013459.1_g000001 Rmu_sc0013765.1_g000004 Rmu_sc0013765.1_g000005 Rmu_sc0014003.1_g000012 Rmu_sc0014003.1_g000014 Rmu_sc0014698.1_g000001 Rmu_sc0015740.1_g000001 Rmu_sc0016429.1_g000003 Rmu_sc0018885.1_g000001 Rmu_sc0020345.1_g000001 Rmu_sc0027791.1_g000001 Rmu_sc0037325.1_g000001 Rmu_ssc0000010.1_g000024 Rmu_ssc0000010.1_g000025 Rmu_ssc0000083.1_g000021 Rmu_ssc0000340.1_g000002 Rmu_ssc0000386.1_g000002 Rmu_ssc0000386.1_g000024 Rmu_ssc0000386.1_g000025 Rmu_ssc0000386.1_g000034 Rmu_ssc0000386.1_g000037 Rmu_ssc0000477.1_g000001
rosa_roxburghii Rroxscaffold_161G00448010 Rroxscaffold_164G00436080 Rroxscaffold_1G00024500 Rroxscaffold_2G00124290 Rroxscaffold_3G00222940 Rroxscaffold_3G00227440 Rroxscaffold_4G00304810 Rroxscaffold_4G00330180 Rroxscaffold_4G00330200 Rroxscaffold_5G00356620 Rroxscaffold_5G00358170 Rroxscaffold_5G00360880 Rroxscaffold_5G00361220 Rroxscaffold_5G00361950 Rroxscaffold_5G00361960 Rroxscaffold_5G00361990 Rroxscaffold_5G00362370 Rroxscaffold_5G00364540 Rroxscaffold_5G00364550 Rroxscaffold_5G00364580 Rroxscaffold_5G00364600 Rroxscaffold_6G00393290 Rroxscaffold_6G00412680 Rroxscaffold_6G00412790 Rroxscaffold_6G00413470 Rroxscaffold_6G00413720 Rroxscaffold_6G00416070 Rroxscaffold_7G00205400
rosa_rugosa Rorug01G0017300 Rorug01G0017400 Rorug01G0018000 Rorug01G0018100 Rorug01G0211500 Rorug02G0638200 Rorug03G0070000 Rorug03G0071200 Rorug03G0081000 Rorug03G0086500 Rorug03G0089300 Rorug03G0095300 Rorug03G0096000 Rorug03G0096000 Rorug04G0055000 Rorug04G0078300 Rorug04G0104100.1 Rorug04G0113800 Rorug04G0126700 Rorug04G0128000 Rorug04G0145900 Rorug04G0148700 Rorug04G0149100 Rorug04G0149100 Rorug04G0149200 Rorug04G0149300 Rorug04G0154900 Rorug04G0180400 Rorug04G0180500 Rorug04G0180700 Rorug04G0180800 Rorug04G0401500 Rorug04G0402100 Rorug05G0288600 Rorug05G0334100 Rorug07G0176400
rosa_samantha Rh1DG043200 Rh1DG043500 Rh1DG043900 Rh1DG222800 Rh3CG039900 Rh3CG156200 Rh3CG328500 Rh3CG328800 Rh3DG165000 Rh4AG208400 Rh4BG205600 Rh4BG213900 Rh4BG243900 Rh4CG198800 Rh4DG168600 Rh4DG180100 Rh4DG180300 Rh4DG180600 Rh4DG181200 Rh4DG181600 Rh4DG181700 Rh4DG183700 Rh4DG184000 Rh4DG184400 Rh4DG184700 Rh4DG206100 Rh4DG206200 Rh4DG206300 Rh4DG215600 Rh4DG238700 Rh4DG238900 Rh5DG390300
rosa_wichuraiana Rw0G005050 Rw0G009260 Rw0G009280 Rw0G015600 Rw0G023570 Rw1G002140 Rw1G002170 Rw1G002210 Rw1G002240 Rw1G019500 Rw2G015490 Rw3G003020 Rw3G010900 Rw3G012030 Rw3G012790 Rw3G013050 Rw3G013540 Rw3G013640 Rw3G013650 Rw3G026050 Rw3G026070 Rw4G015740 Rw4G015790 Rw4G015910 Rw4G015930 Rw4G015950 Rw4G017900 Rw4G017930 Rw4G018440 Rw4G018450 Rw4G018530 Rw4G020720 Rw4G020760 Rw5G019250 Rw5G034370 Rw7G018700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 602, 616
Acc36I ACCTGC 2 cut(s) 602, 616
AccB1I GGYRCC 3 cut(s) 163, 1624, 1820
AccII CGCG 1 cut(s) 1755
AciI CCGC 2 cut(s) 927, 1327
AclWI GGATC 2 cut(s) 1127, 1606
AcsI RAATTY 3 cut(s) 119, 150, 589
AcuI CTGAAG 4 cut(s) 884, 1110, 1604, 1691
AfaI GTAC 5 cut(s) 466, 955, 1246, 1425, 1803
AfiI CCNNNNNNNGG 5 cut(s) 614, 1637, 1667, 1730, 1775
AflIII ACRYGT 1 cut(s) 201
AhlI ACTAGT 2 cut(s) 461, 812
AjnI CCWGG 4 cut(s) 622, 1477, 1651, 1723
AjuI GAANNNNNNNTTGG 2 cut(s) 495, 527
AleI CACNNNNGTG 1 cut(s) 1527
Alw21I GWGCWC 2 cut(s) 394, 1645
Alw44I GTGCAC 1 cut(s) 1641
AlwI GGATC 2 cut(s) 1127, 1606
AlwNI CAGNNNCTG 2 cut(s) 1061, 1079
Ama87I CYCGRG 1 cut(s) 757
AoxI GGCC 3 cut(s) 897, 1389, 1781
ApaI GGGCCC 1 cut(s) 1785
ApaLI GTGCAC 1 cut(s) 1641
ApeKI GCWGC 5 cut(s) 366, 437, 852, 974, 1268
ApoI RAATTY 3 cut(s) 119, 150, 589
AspLEI GCGC 3 cut(s) 1040, 1333, 1757
AspS9I GGNCC 4 cut(s) 898, 1781, 1782, 1829
AsuHPI GGTGA 2 cut(s) 597, 1650
AvaI CYCGRG 1 cut(s) 757
AvaII GGWCC 1 cut(s) 1829
BaeGI GKGCMC 3 cut(s) 1051, 1645, 1785
BanI GGYRCC 3 cut(s) 163, 1624, 1820
BanII GRGCYC 1 cut(s) 1785
BauI CACGAG 2 cut(s) 1140, 1161
BbsI GAAGAC 1 cut(s) 1412
Bbv12I GWGCWC 2 cut(s) 394, 1645
BbvCI CCTCAGC 1 cut(s) 441
BbvI GCAGC 5 cut(s) 378, 424, 839, 961, 1280
BccI CCATC 9 cut(s) 64, 106, 136, 175, 523, 579, 1432, 1567, 1684
BcgI CGANNNNNNTGC 2 cut(s) 557, 591
BciT130I CCWGG 4 cut(s) 624, 1479, 1653, 1725
BclI TGATCA 1 cut(s) 229
BcuI ACTAGT 2 cut(s) 461, 812
BfaI CTAG 7 cut(s) 27, 345, 462, 660, 753, 813, 1854
BfmI CTRYAG 4 cut(s) 609, 853, 1071, 1833
BfoI RGCGCY 1 cut(s) 1334
BfuAI ACCTGC 2 cut(s) 602, 616
BisI GCNGC 5 cut(s) 367, 438, 853, 975, 1269
BlsI GCNGC 5 cut(s) 368, 439, 854, 976, 1270
BmcAI AGTACT 1 cut(s) 466
Bme1390I CCNGG 4 cut(s) 624, 1479, 1653, 1725
Bme18I GGWCC 1 cut(s) 1829
BmeT110I CYCGRG 1 cut(s) 757
BmgT120I GGNCC 4 cut(s) 898, 1781, 1782, 1829
BmiI GGNNCC 8 cut(s) 100, 165, 900, 948, 1252, 1626, 1783, 1822
BmrFI CCNGG 4 cut(s) 624, 1479, 1653, 1725
BmsI GCATC 8 cut(s) 329, 515, 938, 979, 1048, 1314, 1737, 1884
BpiI GAAGAC 1 cut(s) 1412
BplI GAGNNNNNCTC 4 cut(s) 977, 1009, 1144, 1176
BpmI CTGGAG 2 cut(s) 889, 1797
Bpu10I CCTNAGC 2 cut(s) 441, 1102
BpuEI CTTGAG 3 cut(s) 962, 1830, 1872
BsaAI YACGTR 1 cut(s) 953
BsaBI GATNNNNATC 1 cut(s) 839
BsaJI CCNNGG 2 cut(s) 209, 382
BsaXI ACNNNNNCTCC 6 cut(s) 998, 1028, 1401, 1431, 1818, 1848
Bsc4I CCNNNNNNNGG 5 cut(s) 614, 1637, 1667, 1730, 1775
Bse1I ACTGG 2 cut(s) 18, 906
Bse8I GATNNNNATC 1 cut(s) 839
BseBI CCWGG 4 cut(s) 624, 1479, 1653, 1725
BseDI CCNNGG 2 cut(s) 209, 382
BseGI GGATG 4 cut(s) 151, 994, 1578, 1695
BseJI GATNNNNATC 1 cut(s) 839
BseLI CCNNNNNNNGG 5 cut(s) 614, 1637, 1667, 1730, 1775
BseMII CTCAG 4 cut(s) 432, 819, 960, 1116
BseNI ACTGG 2 cut(s) 18, 906
BseSI GKGCMC 3 cut(s) 1051, 1645, 1785
BseXI GCAGC 5 cut(s) 378, 424, 839, 961, 1280
BsgI GTGCAG 2 cut(s) 385, 1892
Bsh1236I CGCG 1 cut(s) 1755
Bsh1285I CGRYCG 1 cut(s) 1240
BshFI GGCC 3 cut(s) 899, 1391, 1783
BshNI GGYRCC 3 cut(s) 163, 1624, 1820
BsiEI CGRYCG 1 cut(s) 1240
BsiHKAI GWGCWC 2 cut(s) 394, 1645
BsiHKCI CYCGRG 1 cut(s) 757
BsiSI CCGG 1 cut(s) 1824
BslI CCNNNNNNNGG 5 cut(s) 614, 1637, 1667, 1730, 1775
BsmI GAATGC 2 cut(s) 1187, 1488
BsnI GGCC 3 cut(s) 899, 1391, 1783
BsoBI CYCGRG 1 cut(s) 757
Bsp120I GGGCCC 1 cut(s) 1781
Bsp1286I GDGCHC 4 cut(s) 394, 1051, 1645, 1785
Bsp143I GATC 4 cut(s) 229, 524, 1132, 1598
Bsp19I CCATGG 1 cut(s) 382
BspACI CCGC 2 cut(s) 927, 1327
BspANI GGCC 3 cut(s) 899, 1391, 1783
BspCNI CTCAG 4 cut(s) 433, 820, 961, 1115
BspFNI CGCG 1 cut(s) 1755
BspLI GGNNCC 8 cut(s) 100, 165, 900, 948, 1252, 1626, 1783, 1822
BspMAI CTGCAG 2 cut(s) 613, 857
BspMI ACCTGC 2 cut(s) 602, 616
BspPI GGATC 2 cut(s) 1127, 1606
BspT107I GGYRCC 3 cut(s) 163, 1624, 1820
BsrI ACTGG 2 cut(s) 18, 906
BssECI CCNNGG 2 cut(s) 209, 382
BssMI GATC 4 cut(s) 229, 524, 1132, 1598
BssSI CACGAG 2 cut(s) 1140, 1161
BssT1I CCWWGG 2 cut(s) 209, 382
Bst2BI CACGAG 2 cut(s) 1140, 1161
Bst2UI CCWGG 4 cut(s) 624, 1479, 1653, 1725
Bst4CI ACNGT 3 cut(s) 882, 966, 1238
Bst6I CTCTTC 1 cut(s) 1145
BstAPI GCANNNNNTGC 1 cut(s) 1492
BstBAI YACGTR 1 cut(s) 953
BstC8I GCNNGC 2 cut(s) 1329, 1497
BstDEI CTNAG 7 cut(s) 441, 828, 933, 969, 996, 1102, 1762
BstDSI CCRYGG 1 cut(s) 382
BstEII GGTNACC 1 cut(s) 1607
BstENI CCTNNNNNAGG 2 cut(s) 1635, 1728
BstF5I GGATG 4 cut(s) 151, 994, 1578, 1695
BstFNI CGCG 1 cut(s) 1755
BstH2I RGCGCY 1 cut(s) 1334
BstHHI GCGC 3 cut(s) 1040, 1333, 1757
BstKTI GATC 4 cut(s) 232, 527, 1135, 1601
BstMBI GATC 4 cut(s) 229, 524, 1132, 1598
BstMCI CGRYCG 1 cut(s) 1240
BstMWI GCNNNNNNNGC 6 cut(s) 608, 716, 1046, 1492, 1624, 1633
BstNI CCWGG 4 cut(s) 624, 1479, 1653, 1725
BstNSI RCATGY 3 cut(s) 205, 1495, 1499
BstPI GGTNACC 1 cut(s) 1607
BstSCI CCNGG 4 cut(s) 622, 1477, 1651, 1723
BstSFI CTRYAG 4 cut(s) 609, 853, 1071, 1833
BstSLI GKGCMC 3 cut(s) 1051, 1645, 1785
BstUI CGCG 1 cut(s) 1755
BstV1I GCAGC 5 cut(s) 378, 424, 839, 961, 1280
BstV2I GAAGAC 1 cut(s) 1412
BstX2I RGATCY 1 cut(s) 1598
BstYI RGATCY 1 cut(s) 1598
BsuRI GGCC 3 cut(s) 899, 1391, 1783
BtgI CCRYGG 1 cut(s) 382
BtsCI GGATG 4 cut(s) 151, 994, 1578, 1695
BtsIMutI CAGTG 3 cut(s) 887, 913, 1875
BveI ACCTGC 2 cut(s) 602, 616
Cac8I GCNNGC 2 cut(s) 1329, 1497
CaiI CAGNNNCTG 2 cut(s) 1061, 1079
CfoI GCGC 3 cut(s) 1040, 1333, 1757
Cfr13I GGNCC 4 cut(s) 898, 1781, 1782, 1829
Csp6I GTAC 5 cut(s) 465, 954, 1245, 1424, 1802
CviQI GTAC 5 cut(s) 465, 954, 1245, 1424, 1802
DdeI CTNAG 7 cut(s) 441, 828, 933, 969, 996, 1102, 1762
DpnI GATC 4 cut(s) 231, 526, 1134, 1600
DpnII GATC 4 cut(s) 229, 524, 1132, 1598
Eam1104I CTCTTC 1 cut(s) 1145
EarI CTCTTC 1 cut(s) 1145
Eco130I CCWWGG 2 cut(s) 209, 382
Eco24I GRGCYC 1 cut(s) 1785
Eco47I GGWCC 1 cut(s) 1829
Eco57I CTGAAG 4 cut(s) 884, 1110, 1604, 1691
Eco88I CYCGRG 1 cut(s) 757
Eco91I GGTNACC 1 cut(s) 1607
EcoNI CCTNNNNNAGG 2 cut(s) 1635, 1728
EcoO109I RGGNCCY 3 cut(s) 1781, 1782, 1829
EcoO65I GGTNACC 1 cut(s) 1607
EcoRI GAATTC 1 cut(s) 589
EcoRII CCWGG 4 cut(s) 622, 1477, 1651, 1723
EcoT14I CCWWGG 2 cut(s) 209, 382
EcoT22I ATGCAT 1 cut(s) 1497
EcoT38I GRGCYC 1 cut(s) 1785
ErhI CCWWGG 2 cut(s) 209, 382
FalI AAGNNNNNCTT 2 cut(s) 714, 746
FauI CCCGC 1 cut(s) 1320
FbaI TGATCA 1 cut(s) 229
Fnu4HI GCNGC 5 cut(s) 367, 438, 853, 975, 1269
FokI GGATG 4 cut(s) 158, 1001, 1585, 1702
FriOI GRGCYC 1 cut(s) 1785
Fsp4HI GCNGC 5 cut(s) 367, 438, 853, 975, 1269
FspBI CTAG 7 cut(s) 27, 345, 462, 660, 753, 813, 1854
GlaI GCGC 3 cut(s) 1039, 1332, 1756
GluI GCNGC 5 cut(s) 367, 438, 853, 975, 1269
GsuI CTGGAG 2 cut(s) 889, 1797
HaeII RGCGCY 1 cut(s) 1334
HaeIII GGCC 3 cut(s) 899, 1391, 1783
HapII CCGG 1 cut(s) 1824
HhaI GCGC 3 cut(s) 1040, 1333, 1757
Hin6I GCGC 3 cut(s) 1038, 1331, 1755
HinP1I GCGC 3 cut(s) 1038, 1331, 1755
HincII GTYRAC 2 cut(s) 553, 873
HindII GTYRAC 2 cut(s) 553, 873
HindIII AAGCTT 4 cut(s) 419, 1122, 1371, 1848
HpaI GTTAAC 1 cut(s) 553
HpaII CCGG 1 cut(s) 1824
HphI GGTGA 2 cut(s) 597, 1650
Hpy166II GTNNAC 9 cut(s) 133, 553, 685, 860, 873, 1117, 1366, 1643, 1658
Hpy188I TCNGA 8 cut(s) 351, 538, 970, 1129, 1180, 1291, 1710, 1929
Hpy8I GTNNAC 9 cut(s) 133, 553, 685, 860, 873, 1117, 1366, 1643, 1658
HpyAV CCTTC 3 cut(s) 859, 1296, 1715
HpyCH4III ACNGT 3 cut(s) 882, 966, 1238
HpyCH4IV ACGT 2 cut(s) 749, 952
HpyF10VI GCNNNNNNNGC 6 cut(s) 608, 716, 1046, 1492, 1624, 1633
HpyF3I CTNAG 7 cut(s) 441, 828, 933, 969, 996, 1102, 1762
HpySE526I ACGT 2 cut(s) 749, 952
HspAI GCGC 3 cut(s) 1038, 1331, 1755
Ksp22I TGATCA 1 cut(s) 229
KspAI GTTAAC 1 cut(s) 553
Kzo9I GATC 4 cut(s) 229, 524, 1132, 1598
LmnI GCTCC 3 cut(s) 1442, 1697, 1922
Lsp1109I GCAGC 5 cut(s) 378, 424, 839, 961, 1280
LweI GCATC 8 cut(s) 329, 515, 938, 979, 1048, 1314, 1737, 1884
MaeI CTAG 7 cut(s) 27, 345, 462, 660, 753, 813, 1854
MaeII ACGT 2 cut(s) 749, 952
MaeIII GTNAC 3 cut(s) 188, 1470, 1607
MalI GATC 4 cut(s) 231, 526, 1134, 1600
MboI GATC 4 cut(s) 229, 524, 1132, 1598
MboII GAAGA 9 cut(s) 121, 417, 722, 1083, 1162, 1205, 1217, 1417, 1593
MflI RGATCY 1 cut(s) 1598
MhlI GDGCHC 4 cut(s) 394, 1051, 1645, 1785
MlyI GAGTC 5 cut(s) 43, 128, 839, 878, 1169
MmeI TCCRAC 2 cut(s) 62, 1513
Mph1103I ATGCAT 1 cut(s) 1497
MseI TTAA 2 cut(s) 45, 552
MslI CAYNNNNRTG 4 cut(s) 387, 738, 1494, 1527
MspA1I CMGCKG 1 cut(s) 1799
MspI CCGG 1 cut(s) 1824
MspR9I CCNGG 4 cut(s) 624, 1479, 1653, 1725
Mva1269I GAATGC 2 cut(s) 1187, 1488
MvaI CCWGG 4 cut(s) 624, 1479, 1653, 1725
MvnI CGCG 1 cut(s) 1755
MwoI GCNNNNNNNGC 6 cut(s) 608, 716, 1046, 1492, 1624, 1633
NcoI CCATGG 1 cut(s) 382
NdeII GATC 4 cut(s) 229, 524, 1132, 1598
NlaIV GGNNCC 8 cut(s) 100, 165, 900, 948, 1252, 1626, 1783, 1822
NmuCI GTSAC 1 cut(s) 188
NsiI ATGCAT 1 cut(s) 1497
NspI RCATGY 3 cut(s) 205, 1495, 1499
OliI CACNNNNGTG 1 cut(s) 1527
PaeI GCATGC 1 cut(s) 1499
PaeR7I CTCGAG 1 cut(s) 757
PaqCI CACCTGC 2 cut(s) 602, 616
PciI ACATGT 1 cut(s) 201
PcsI WCGNNNNNNNCGW 2 cut(s) 324, 755
PctI GAATGC 2 cut(s) 1187, 1488
PfeI GAWTC 6 cut(s) 73, 845, 1208, 1311, 1865, 1924
PkrI GCNGC 5 cut(s) 368, 439, 854, 976, 1270
PleI GAGTC 5 cut(s) 42, 128, 838, 877, 1169
PpsI GAGTC 5 cut(s) 42, 128, 838, 877, 1169
Ppu21I YACGTR 1 cut(s) 953
PpuMI RGGWCCY 1 cut(s) 1829
PscI ACATGT 1 cut(s) 201
Psp5II RGGWCCY 1 cut(s) 1829
Psp6I CCWGG 4 cut(s) 622, 1477, 1651, 1723
PspEI GGTNACC 1 cut(s) 1607
PspGI CCWGG 4 cut(s) 622, 1477, 1651, 1723
PspN4I GGNNCC 8 cut(s) 100, 165, 900, 948, 1252, 1626, 1783, 1822
PspOMI GGGCCC 1 cut(s) 1781
PspPI GGNCC 4 cut(s) 898, 1781, 1782, 1829
PspPPI RGGWCCY 1 cut(s) 1829
PspXI VCTCGAGB 1 cut(s) 757
PsrI GAACNNNNNNTAC 2 cut(s) 451, 483
PstI CTGCAG 2 cut(s) 613, 857
PstNI CAGNNNCTG 2 cut(s) 1061, 1079
PsuI RGATCY 1 cut(s) 1598
PvuII CAGCTG 1 cut(s) 1799
RsaI GTAC 5 cut(s) 466, 955, 1246, 1425, 1803
RsaNI GTAC 5 cut(s) 465, 954, 1245, 1424, 1802
RseI CAYNNNNRTG 4 cut(s) 387, 738, 1494, 1527
SaqAI TTAA 2 cut(s) 45, 552
SatI GCNGC 5 cut(s) 367, 438, 853, 975, 1269
Sau3AI GATC 4 cut(s) 229, 524, 1132, 1598
Sau96I GGNCC 4 cut(s) 898, 1781, 1782, 1829
SbfI CCTGCAGG 1 cut(s) 613
ScaI AGTACT 1 cut(s) 466
SchI GAGTC 5 cut(s) 43, 128, 839, 878, 1169
ScrFI CCNGG 4 cut(s) 624, 1479, 1653, 1725
SdaI CCTGCAGG 1 cut(s) 613
SduI GDGCHC 4 cut(s) 394, 1051, 1645, 1785
SfaNI GCATC 8 cut(s) 329, 515, 938, 979, 1048, 1314, 1737, 1884
SfcI CTRYAG 4 cut(s) 609, 853, 1071, 1833
Sfr274I CTCGAG 1 cut(s) 757
SinI GGWCC 1 cut(s) 1829
SlaI CTCGAG 1 cut(s) 757
SmiMI CAYNNNNRTG 4 cut(s) 387, 738, 1494, 1527
SmlI CTYRAG 4 cut(s) 757, 941, 1845, 1887
SmoI CTYRAG 4 cut(s) 757, 941, 1845, 1887
SpeI ACTAGT 2 cut(s) 461, 812
SphI GCATGC 1 cut(s) 1499
Sse8387I CCTGCAGG 1 cut(s) 613
SsiI CCGC 2 cut(s) 927, 1327
SspMI CTAG 7 cut(s) 27, 345, 462, 660, 753, 813, 1854
StyD4I CCNGG 4 cut(s) 622, 1477, 1651, 1723
StyI CCWWGG 2 cut(s) 209, 382
TaaI ACNGT 3 cut(s) 882, 966, 1238
TaiI ACGT 2 cut(s) 752, 955
TaqI TCGA 7 cut(s) 76, 327, 758, 833, 843, 1240, 1436
TatI WGTACW 2 cut(s) 464, 1423
TfiI GAWTC 6 cut(s) 73, 845, 1208, 1311, 1865, 1924
Tru1I TTAA 2 cut(s) 45, 552
Tru9I TTAA 2 cut(s) 45, 552
TscAI CASTG 3 cut(s) 887, 913, 1875
TseFI GTSAC 1 cut(s) 188
TseI GCWGC 5 cut(s) 366, 437, 852, 974, 1268
Tsp45I GTSAC 1 cut(s) 188
TspDTI ATGAA 8 cut(s) 162, 261, 932, 1332, 1604, 1805, 1895, 1937
TspRI CASTG 3 cut(s) 887, 913, 1875
VneI GTGCAC 1 cut(s) 1641
VpaK11BI GGWCC 1 cut(s) 1829
XagI CCTNNNNNAGG 2 cut(s) 1635, 1728
XapI RAATTY 3 cut(s) 119, 150, 589
XceI RCATGY 3 cut(s) 205, 1495, 1499
XcmI CCANNNNNNNNNTGG 1 cut(s) 109
XhoI CTCGAG 1 cut(s) 757
XspI CTAG 7 cut(s) 27, 345, 462, 660, 753, 813, 1854
ZrmI AGTACT 1 cut(s) 466
Zsp2I ATGCAT 1 cut(s) 1497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.