RchiOBHm_Chr4g0417531

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
42820942 .. 42831834
10893 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38761

Sequence Viewer

Length: 4155 bp
ATGTTTCTCGCTGAAGCCGCTGCCGGAGAAGTACTGAGTAAGGTGATTTCACTCGCTACTGATCAATTGAGACTCGATATCGTCTTGGGGTTCCGCGAAGAGATACATAAGCTCAAAGAATCCTCAACTCAGATTGGAAATTTAATCCGTGATGCTGCTCATGAACCTGAAGATCGGAAACTGCAGGCAAGGGCCGATTGGATGAAGAGGCTTATAAGCGTAGCTTATAATGCAGACGATATTCTGGATGAAATAGAATATGAAGTTCATCGGATCCGTATAGAGGAGACCCTGGATAAGAAGATACTCGGCTTCTTCTGCAACAATCCTGTTGTATTTCGCCTCAAGATGGCACGCAAGATTTACAACATCAACACATCCTTGGAGAATCTCAAAAAGGATGCACCCGCTGTGGGACTCGTCATAACAATGGGATCAAATGGAGGTGCAGCAGCAAGTCAAGGTAGGCGGGACAGGGAAACAACCTCATTCCCAGATGCAAAAATTGTTGGAAGGGATCAGGTTGTGTTAGATATAATTGCAACCTTGACCACCTCCCACAATCAAGAAAATATTCCTTCGGTGATGGCTATCGTAGGATTGGGAGGCCTAGGTAAAACAACTGTGGCTCGCTCAGTTACCAAGCAACTGAAAGAAGGTGAAATGAAAAAGTACTTTGATACAACTCTCTGGGTGTACGTATCTAATAATTTTGATGTCAACTCAATTTTACATCGAATGGTGCAATCATGTGGCGTGACGGGAATGGACTCTTCAAATCAGCAAGTATTGATAGAAAACCTCCAGCAGAAGTTGAAAGACAAAAGGTATTTTCTTGTACTTGATGACGTTTGGAATGAGAAAGCTGACGATTGGAGTAAGTTGATGGGTTGTTTGTCGCAACTAAATTCTGCCAAGGGAAGCTCTGTGATCGTCACCACCCGTAGTGCCAAGGTTGCATCCATAATGGAAACACTTCCTAGGTGCGATCTAGAGACTCTATCGGATGATGAATGTTGGTCCATATTGAAGGATAGAGCATTTGCGGATCCTAATGCTCTGATACCTTCAAAACTAGAGGAAATCGGGAGGGACATTGCCAAAAAGTGTGCTGGTCTTCCATTGCTGGCAAAGGTTTTGGGAAGCTTGATGCGTTTGAAAAATAGTGAGGAAGAATGGTTATCAATTCTGAGAAGTCCAATATGGCAGCAATCATCTGATGAAGAGGATAGCAGGATCGTGTCCGTTCTGAGGTTGAGTTTTGACAATTTGAAATCACCGCTGAAACAATGCTTTGCATATTGCTCCATGCTCGAAAGAGGCTCCTTAATTGAAAGAGATAACTTGATCCAACTATGGATGGCTCAAGGTTTTCTGAAAACTTTTCTCCATCCTTCTCATGATCACCAAAGCAACCAAGGGATAGAAATGGAGGGTATAGGCAGCAGGTATTTTGATACTCTACTGGAGAACTCCTTATTTCAAAGTGCTACAAACGATGAGGATGGCTTTATCACCAAATGCAAGATGCACGATCTAGTGCATGATCTCGCAATAGAAGTATCCAAGTGTGAGAGCTTGACACCAGACCTCAATCATGAGATGGATGATCATGAGATTCGACATGTTGCACGGATTCCTACTCAAAAGCTAGAAAGTATGTCAAAAACAAATATTTCAAGACTGCGCTCACTCTTTTCGAATGACCACGTGTCTAATACCAATTTCCGAAAGTTTAGAGCTTTACGTGTCTTAAGTTTCTTTGGGAATAAGCAGATTCAGAAGTTGCCATATTCACTTGATAAGCAGATTCAGAAGTTGCCATATTCACTTGGCAAGCTGAAGCACTTGAGGTATCTGGATCTTTCCCAAATAAAAATTGAATCACTCCCAAAGTCTATTGGCAAGCTCTATAACCTCCAAACATTGAGATTACCTGGGGATCTTGAAAAGTGTCCAAAGGAGATTCAAAATTTGATCAACTTGAGGCATTTTTATTTTGGTAAGGGGATGAAATTTAAGGCTGAGATTTTGGAGCGATTAACTAATCTCCGAACACTGCCTTCCTTTAATGTGGGTAAGGAGAGAGGTCCTGCAATTAAGGAGTTGGGTGGGTTGAAACGACTGAGAGGCCACTTAACTATTCGAAATCTAGAACATGTAAGGGATGGTGAAGAAGCAAAGAAGGCTTTCTTAGTGGAGAAGAGTCACTTGAGCAAGGTAACATTTAAATGGACACCATCCCGTTGGCGACTTAATGACAATGAGACGGATGTACTAGATGACAATGAGACGGATGTACTAGATGGCTTGGAACCTCATGGTAACTTGCAAAGCTTGAAGATTTCCTGTTTCGAGGGTGCTAGGTTTCCGTCATGGATAACGAGTCTCCAAAATTTGAAGCAGATTATCTTACGTGGCTGCGAAGGAGTCCCAACACTCGGCCATCTACCTAATCTAAGATCTCTTGAGATTAATGGGAGGATGGAAAAGCTGAAACGTGTGGGAGCTGAGTTTCATGGTTATAGTGATACTAGCACAACTTTATTTCCAGCTCTGAAAACACTATCCATCTGGGGGTGCGAAGAGCTCATTGAATGGACGGAAGCACCGAGGATATCAGCTGAAGGAGAGGTCGTGAAGGTATTTCCTTGCCTCGAAGAGTTGAGCATATCTAGATGTGACAGCCTACAGTCGATTGCAATCACACAGGGCATCGCATCTCTCCGTCAATTGAACATCTGGGCCTGTAGGGGATTATCGAGCCTCGAGGTTGGGCTCGATTACTGCACCTCTCTTCAGGAGTTGAATATAAGTTCTTGCCCTAAACTGGTTTCAATTCCAACCGCACAGGGCATGCCGTCTCTCCGGAAATTGGATCTCGTACAGTGTAATGGATTGTCAAGCCTAGGAAGTGGGCTCAACTACTGCACCTCTCTTCAGAAGTTGGACATCTCCTACTGCCCCAAGCTGATGTCAATTCCAATCGCACAGGGCATCGCATCTCTCCGTGAATTGAAAATCCATGGTTATGAGGCATTATCAAGCCTAGAGGTTGGGCTCGATTACTGCACCTCTCTTCAGGAATTGGACATCTCTGGCTGCCGCAATCTGATGTCAATTCCAATCGCACAGGGCATCGCATCTCTCCGTCAATTGAAGATCCATATGTGTGAGGCATTAGCAAGCCTAGAGGTTGGGCTCGATTGCTGCACCTCTCTTCAGGAATTGAAAATCTCCTACTGCCCCAAACTGATGTCAATTCCAACCGCACAGGGCATGCCGTCTCTCCGGAAATTGACGATTGAAAGGTGTGACAAATTGTCAAGCCTAGGAAGTGGGCTCAACTACTGCACCTCTCTTCAGAAATTGGGGATTGAAGATTGTCACAATCTAACATCAATTCCAATCACACAGGGCATCACATCTCTCCGGAGGTTGAGCATTGATTCTTGTAAGAGATTATTAAGCCTACCGAGTGGGCTCCAATTCTGCACCTCTCTTGAGTATCTGGTTATAAGGGATTGCTCTAGTCTAGTATCCATGTCAGTATCATATGTGACGTGCGACCACCCGGACTCAACGAATCAACCGGAGGAAATCTCTACAGGTGTTGATGCGTATTTGTCTTTACAGGAGGAGGATTGCCCTGGTCTAGAATCTATTCCACCTAATCTCCGTCACTTGTTGATATGTCATTGTGGGAAATTCAAATCACAAGTGCCCACAGGATTTCACCGCCTCACTCGTTTGAAGACGCTGAGAATTGGTGCTTTCTGGGAGGAGCTGGACGCCTTCCCTGATTTTCAGCTTCCTCCACCACATGATTCACAACTTGAAGAGTTATTGTTGAAGGGGTGGCCTAAGCTCAAGTCTCTGCCCCAACAAATTCAGCACTTGACTTGTTTAAAAGAACTCTGGATAAGTTCTTTTGAGGGACTAGAGGCTCTTCCTGAGTGGTTGGGAAATCTTACATCTCTTGAGACTCTGGAGATCTGGCATTGTAAGAATCTCAAGTATCTACCTACACAAAATGCCCTCACCAAATTGCAGCATCTCAACATTTCAAACTGTCCCCTGCTCGAAGAAAGATGCACCAAGGAGACTGGCCCAGAATGGCCCAAGATTTCTCACATCCCATATCTTCGGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

1384

Amino Acids

155.73

Weight (kDa)

6.67

Isoelectric Point (pI)

47.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 9 - 93 1.2e-10 Rx N-terminal domain
NB-ARC PF00931 177 - 350 1.8e-33 NB-ARC domain
AAA_22 PF13401 194 - 295 1.3e-07 AAA domain
WHD_DRP PF23559 441 - 518 3.2e-19 Disease resistance protein Winged helix domain
LRR_14 PF23598 562 - 862 2.2e-33 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 700 - 826 8.3e-32 R13L1/DRL21 LRRs
LRR_14 PF23598 1279 - 1366 4.9e-07 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 1296 - 1358 5.3e-08 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000029)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13530 FvH4_4g18270 FvH4_6g12200 FvH4_6g12460 FvH4_6g12461 FvH4_6g13450 FvH4_6g15090 FvH4_6g15220 FvH4_6g15230 FvH4_6g15250 FvH4_6g15251 FvH4_6g15340 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47050 FvH4_6g47980 FvH4_6g47980 FvH4_6g47980 FvH4_6g48170 FvH4_6g48310 FvH4_6g48310 FvH4_6g48850 FvH4_6g48881 FvH4_7g11830
malus_domestica MD02G1059900.v1.1 MD02G1069600.v1.1 MD02G1069700.v1.1 MD02G1070100.v1.1 MD02G1070200.v1.1 MD02G1070300.v1.1 MD02G1070800.v1.1 MD02G1070900.v1.1 MD02G1071200.v1.1 MD02G1071400.v1.1 MD02G1071900.v1.1 MD02G1075200.v1.1 MD03G1048000.v1.1 MD03G1049100.v1.1 MD03G1049200.v1.1 MD03G1052500.v1.1 MD03G1054100.v1.1 MD03G1054300.v1.1 MD03G1054400.v1.1 MD04G1113400.v1.1 MD04G1211100.v1.1 MD04G1211200.v1.1 MD05G1174900.v1.1 MD05G1175000.v1.1 MD05G1175900.v1.1 MD05G1243400.v1.1 MD07G1031500.v1.1 MD07G1031600.v1.1 MD07G1032500.v1.1 MD11G1046800.v1.1 MD11G1046900.v1.1 MD11G1047000.v1.1 MD11G1050400.v1.1 MD11G1050600.v1.1 MD11G1050800.v1.1 MD11G1051100.v1.1 MD11G1051600.v1.1 MD11G1051700.v1.1 MD11G1054600.v1.1 MD11G1055600.v1.1 MD11G1055700.v1.1 MD11G1055800.v1.1 MD11G1056000.v1.1 MD12G1126600.v1.1 MD12G1126700.v1.1 MD12G1126800.v1.1 MD12G1127300.v1.1 MD12G1127600.v1.1 MD12G1127900.v1.1 MD12G1128100.v1.1 MD12G1128300.v1.1 MD15G1261500.v1.1
prunus_persica Prupe.1G010700_v2.0.a1 Prupe.1G010800_v2.0.a1 Prupe.1G011000_v2.0.a1 Prupe.1G159600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163600_v2.0.a1 Prupe.1G163700_v2.0.a1 Prupe.1G163700_v2.0.a1 Prupe.1G163800_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G164000_v2.0.a1 Prupe.1G235500_v2.0.a1 Prupe.2G067400_v2.0.a1 Prupe.2G067500_v2.0.a1 Prupe.2G111700_v2.0.a1 Prupe.2G111800_v2.0.a1 Prupe.3G012000_v2.0.a1 Prupe.6G243400_v2.0.a1 Prupe.6G243500_v2.0.a1 Prupe.6G243600_v2.0.a1 Prupe.6G243700_v2.0.a1 Prupe.6G243800_v2.0.a1 Prupe.6G243900_v2.0.a1
pyrus_communis pycom02g04860 pycom02g04880 pycom02g04890 pycom02g05510 pycom02g05520 pycom02g05600 pycom02g05930 pycom02g06000 pycom02g06010 pycom03g03800 pycom03g03860 pycom03g03880 pycom03g03890 pycom03g03910 pycom03g03920 pycom03g04200 pycom03g04290 pycom03g04300 pycom03g04310 pycom03g04320 pycom03g09260 pycom04g10150 pycom04g10160 pycom04g10170 pycom05g16180 pycom05g16190 pycom05g16240 pycom05g21980 pycom05g21990 pycom07g02280 pycom11g03800 pycom11g03810 pycom11g04080 pycom11g04140 pycom11g04150 pycom11g04160 pycom11g04570 pycom11g04580 pycom11g04590 pycom11g04610 pycom12g12470 pycom12g12490 pycom13g22050
rosa_chinensis RchiOBHm_Chr1g0317761 RchiOBHm_Chr1g0317821 RchiOBHm_Chr1g0317831 RchiOBHm_Chr1g0317871 RchiOBHm_Chr1g0350501 RchiOBHm_Chr2g0107631 RchiOBHm_Chr3g0452091 RchiOBHm_Chr3g0464001 RchiOBHm_Chr3g0464281 RchiOBHm_Chr3g0466331 RchiOBHm_Chr3g0467341 RchiOBHm_Chr3g0467381 RchiOBHm_Chr3g0467731 RchiOBHm_Chr3g0468291 RchiOBHm_Chr3g0468321 RchiOBHm_Chr3g0468341 RchiOBHm_Chr3g0468391 RchiOBHm_Chr3g0468411 RchiOBHm_Chr3g0468571 RchiOBHm_Chr3g0468591 RchiOBHm_Chr3g0490721 RchiOBHm_Chr3g0490751 RchiOBHm_Chr3g0490761 RchiOBHm_Chr3g0490771 RchiOBHm_Chr3g0490951 RchiOBHm_Chr3g0491001 RchiOBHm_Chr3g0491011 RchiOBHm_Chr4g0412461 RchiOBHm_Chr4g0414161 RchiOBHm_Chr4g0414181 RchiOBHm_Chr4g0414191 RchiOBHm_Chr4g0414281 RchiOBHm_Chr4g0414441 RchiOBHm_Chr4g0414521 RchiOBHm_Chr4g0414531 RchiOBHm_Chr4g0417011 RchiOBHm_Chr4g0417021 RchiOBHm_Chr4g0417041 RchiOBHm_Chr4g0417071 RchiOBHm_Chr4g0417101 RchiOBHm_Chr4g0417531 RchiOBHm_Chr4g0417641 RchiOBHm_Chr4g0417651 RchiOBHm_Chr4g0417701 RchiOBHm_Chr4g0417731 RchiOBHm_Chr4g0417741 RchiOBHm_Chr4g0417781 RchiOBHm_Chr4g0418751 RchiOBHm_Chr4g0418791 RchiOBHm_Chr4g0418861 RchiOBHm_Chr4g0418881 RchiOBHm_Chr4g0418901 RchiOBHm_Chr4g0422451 RchiOBHm_Chr4g0422461 RchiOBHm_Chr4g0422471 RchiOBHm_Chr4g0422541 RchiOBHm_Chr4g0422561 RchiOBHm_Chr4g0422591 RchiOBHm_Chr4g0422651 RchiOBHm_Chr4g0422661 RchiOBHm_Chr5g0003251 RchiOBHm_Chr5g0003261 RchiOBHm_Chr5g0055871 RchiOBHm_Chr7g0204701 RchiOBHm_Chr7g0204741
rosa_laevigata RLG00000007607 RLG00000007932 RLG00000017606 RLG00000024418 RLG00000025629 RLG00000030586
rosa_multiflora Rmu_co7959167.1_g000001 Rmu_co8021330.1_g000001 Rmu_co8132128.1_g000001 Rmu_co8224744.1_g000001 Rmu_co8281865.1_g000001 Rmu_co8298487.1_g000001 Rmu_co8319035.1_g000001 Rmu_co8380035.1_g000001 Rmu_co8385371.1_g000001 Rmu_co8398173.1_g000001 Rmu_co8423363.1_g000001 Rmu_co8438275.1_g000001 Rmu_co8474729.1_g000001 Rmu_sc0000057.1_g000008 Rmu_sc0000350.1_g000023 Rmu_sc0000480.1_g000005 Rmu_sc0000654.1_g000021 Rmu_sc0000654.1_g000029 Rmu_sc0000654.1_g000032 Rmu_sc0000654.1_g000041 Rmu_sc0000654.1_g000045 Rmu_sc0000772.1_g000002 Rmu_sc0000772.1_g000041 Rmu_sc0000808.1_g000040 Rmu_sc0000830.1_g000062 Rmu_sc0000830.1_g000065 Rmu_sc0000830.1_g000072 Rmu_sc0000830.1_g000073 Rmu_sc0000935.1_g000020 Rmu_sc0000935.1_g000024 Rmu_sc0000935.1_g000026 Rmu_sc0000935.1_g000027 Rmu_sc0000935.1_g000031 Rmu_sc0000935.1_g000033 Rmu_sc0000962.1_g000033 Rmu_sc0000962.1_g000036 Rmu_sc0000962.1_g000063 Rmu_sc0000962.1_g000064 Rmu_sc0000962.1_g000065 Rmu_sc0001029.1_g000007 Rmu_sc0001063.1_g000014 Rmu_sc0001149.1_g000010 Rmu_sc0001149.1_g000011 Rmu_sc0001358.1_g000009 Rmu_sc0001448.1_g000003 Rmu_sc0001448.1_g000004 Rmu_sc0001729.1_g000005 Rmu_sc0001729.1_g000007 Rmu_sc0001729.1_g000020 Rmu_sc0001729.1_g000023 Rmu_sc0001793.1_g000015 Rmu_sc0002494.1_g000018 Rmu_sc0002494.1_g000019 Rmu_sc0002604.1_g000022 Rmu_sc0002922.1_g000011 Rmu_sc0003008.1_g000009 Rmu_sc0003221.1_g000061 Rmu_sc0003221.1_g000062 Rmu_sc0003459.1_g000014 Rmu_sc0003480.1_g000015 Rmu_sc0003541.1_g000016 Rmu_sc0003541.1_g000020 Rmu_sc0004035.1_g000001 Rmu_sc0004035.1_g000005 Rmu_sc0004035.1_g000011 Rmu_sc0004142.1_g000004 Rmu_sc0004142.1_g000010 Rmu_sc0004353.1_g000008 Rmu_sc0004616.1_g000009 Rmu_sc0004616.1_g000010 Rmu_sc0005231.1_g000004 Rmu_sc0006380.1_g000025 Rmu_sc0006492.1_g000010 Rmu_sc0006895.1_g000001 Rmu_sc0006895.1_g000002 Rmu_sc0006895.1_g000005 Rmu_sc0007034.1_g000004 Rmu_sc0007104.1_g000006 Rmu_sc0008990.1_g000003 Rmu_sc0008990.1_g000004 Rmu_sc0009106.1_g000003 Rmu_sc0009516.1_g000002 Rmu_sc0009516.1_g000003 Rmu_sc0009516.1_g000004 Rmu_sc0009516.1_g000005 Rmu_sc0009645.1_g000001 Rmu_sc0010274.1_g000001 Rmu_sc0010274.1_g000002 Rmu_sc0010419.1_g000003 Rmu_sc0010917.1_g000017 Rmu_sc0011213.1_g000001 Rmu_sc0011228.1_g000007 Rmu_sc0011538.1_g000011 Rmu_sc0011538.1_g000014 Rmu_sc0011538.1_g000015 Rmu_sc0012211.1_g000006 Rmu_sc0012351.1_g000003 Rmu_sc0012351.1_g000005 Rmu_sc0012915.1_g000002 Rmu_sc0013088.1_g000001 Rmu_sc0013459.1_g000001 Rmu_sc0013765.1_g000004 Rmu_sc0013765.1_g000005 Rmu_sc0014003.1_g000012 Rmu_sc0014003.1_g000014 Rmu_sc0014698.1_g000001 Rmu_sc0015740.1_g000001 Rmu_sc0016429.1_g000003 Rmu_sc0018885.1_g000001 Rmu_sc0020345.1_g000001 Rmu_sc0027791.1_g000001 Rmu_sc0037325.1_g000001 Rmu_ssc0000010.1_g000024 Rmu_ssc0000010.1_g000025 Rmu_ssc0000083.1_g000021 Rmu_ssc0000340.1_g000002 Rmu_ssc0000386.1_g000002 Rmu_ssc0000386.1_g000024 Rmu_ssc0000386.1_g000025 Rmu_ssc0000386.1_g000034 Rmu_ssc0000386.1_g000037 Rmu_ssc0000477.1_g000001
rosa_roxburghii Rroxscaffold_161G00448010 Rroxscaffold_164G00436080 Rroxscaffold_1G00024500 Rroxscaffold_2G00124290 Rroxscaffold_3G00222940 Rroxscaffold_3G00227440 Rroxscaffold_4G00304810 Rroxscaffold_4G00330180 Rroxscaffold_4G00330200 Rroxscaffold_5G00356620 Rroxscaffold_5G00358170 Rroxscaffold_5G00360880 Rroxscaffold_5G00361220 Rroxscaffold_5G00361950 Rroxscaffold_5G00361960 Rroxscaffold_5G00361990 Rroxscaffold_5G00362370 Rroxscaffold_5G00364540 Rroxscaffold_5G00364550 Rroxscaffold_5G00364580 Rroxscaffold_5G00364600 Rroxscaffold_6G00393290 Rroxscaffold_6G00412680 Rroxscaffold_6G00412790 Rroxscaffold_6G00413470 Rroxscaffold_6G00413720 Rroxscaffold_6G00416070 Rroxscaffold_7G00205400
rosa_rugosa Rorug01G0017300 Rorug01G0017400 Rorug01G0018000 Rorug01G0018100 Rorug01G0211500 Rorug02G0638200 Rorug03G0070000 Rorug03G0071200 Rorug03G0081000 Rorug03G0086500 Rorug03G0089300 Rorug03G0095300 Rorug03G0096000 Rorug03G0096000 Rorug04G0055000 Rorug04G0078300 Rorug04G0104100.1 Rorug04G0113800 Rorug04G0126700 Rorug04G0128000 Rorug04G0145900 Rorug04G0148700 Rorug04G0149100 Rorug04G0149100 Rorug04G0149200 Rorug04G0149300 Rorug04G0154900 Rorug04G0180400 Rorug04G0180500 Rorug04G0180700 Rorug04G0180800 Rorug04G0401500 Rorug04G0402100 Rorug05G0288600 Rorug05G0334100 Rorug07G0176400
rosa_samantha Rh1DG043200 Rh1DG043500 Rh1DG043900 Rh1DG222800 Rh3CG039900 Rh3CG156200 Rh3CG328500 Rh3CG328800 Rh3DG165000 Rh4AG208400 Rh4BG205600 Rh4BG213900 Rh4BG243900 Rh4CG198800 Rh4DG168600 Rh4DG180100 Rh4DG180300 Rh4DG180600 Rh4DG181200 Rh4DG181600 Rh4DG181700 Rh4DG183700 Rh4DG184000 Rh4DG184400 Rh4DG184700 Rh4DG206100 Rh4DG206200 Rh4DG206300 Rh4DG215600 Rh4DG238700 Rh4DG238900 Rh5DG390300
rosa_wichuraiana Rw0G005050 Rw0G009260 Rw0G009280 Rw0G015600 Rw0G023570 Rw1G002140 Rw1G002170 Rw1G002210 Rw1G002240 Rw1G019500 Rw2G015490 Rw3G003020 Rw3G010900 Rw3G012030 Rw3G012790 Rw3G013050 Rw3G013540 Rw3G013640 Rw3G013650 Rw3G026050 Rw3G026070 Rw4G015740 Rw4G015790 Rw4G015910 Rw4G015930 Rw4G015950 Rw4G017900 Rw4G017930 Rw4G018440 Rw4G018450 Rw4G018530 Rw4G020720 Rw4G020760 Rw5G019250 Rw5G034370 Rw7G018700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 215, 228, 3518
AbsI CCTCGAGG 1 cut(s) 2768
Acc36I ACCTGC 1 cut(s) 1437
AccII CGCG 1 cut(s) 96
AccIII TCCGGA 3 cut(s) 2868, 3291, 3432
AcoI YGGCCR 1 cut(s) 2443
AcsI RAATTY 7 cut(s) 139, 907, 1972, 2015, 2395, 3707, 3888
AcuI CTGAAG 9 cut(s) 33, 189, 1862, 2646, 2783, 2924, 3065, 3206, 3347
AcvI CACGTG 1 cut(s) 1711
AcyI GRCGYC 1 cut(s) 3792
AfaI GTAC 7 cut(s) 33, 674, 698, 840, 2277, 2301, 2886
AfiI CCNNNNNNNGG 8 cut(s) 283, 349, 413, 1251, 2441, 2577, 2830, 2875
AflII CTTAAG 1 cut(s) 1753
AflIII ACRYGT 5 cut(s) 1624, 1710, 1747, 2158, 2500
AhdI GACNNNNNGTC 2 cut(s) 1711, 3322
AjiI CACGTC 1 cut(s) 3564
AjnI CCWGG 3 cut(s) 291, 1936, 3649
Alw21I GWGCWC 1 cut(s) 2592
Ama87I CYCGRG 1 cut(s) 2768
Aor13HI TCCGGA 3 cut(s) 2868, 3291, 3432
AoxI GGCC 8 cut(s) 192, 607, 2131, 2443, 2745, 3860, 4108, 4118
ApoI RAATTY 7 cut(s) 139, 907, 1972, 2015, 2395, 3707, 3888
AseI ATTAAT 1 cut(s) 2475
Asp700I GAANNNNTTC 4 cut(s) 573, 975, 2189, 3663
AspA2I CCTAGG 4 cut(s) 610, 980, 2908, 3331
AspLEI GCGC 1 cut(s) 1689
AspS9I GGNCC 6 cut(s) 192, 1020, 2090, 2745, 4109, 4119
AsuC2I CCSGG 1 cut(s) 3575
AsuII TTCGAA 2 cut(s) 1700, 2146
AvaI CYCGRG 1 cut(s) 2768
AvaII GGWCC 2 cut(s) 1020, 2090
AvrII CCTAGG 4 cut(s) 610, 980, 2908, 3331
BaeGI GKGCMC 1 cut(s) 3726
BamHI GGATCC 2 cut(s) 273, 1048
BanII GRGCYC 7 cut(s) 2592, 2781, 2922, 3063, 3204, 3345, 3486
BbrPI CACGTG 1 cut(s) 1711
BbsI GAAGAC 2 cut(s) 1109, 3761
Bbv12I GWGCWC 1 cut(s) 2592
BceAI ACGGC 2 cut(s) 2845, 3268
BciT130I CCWGG 3 cut(s) 293, 1938, 3651
BciVI GTATCC 2 cut(s) 1573, 3550
BclI TGATCA 4 cut(s) 61, 1402, 1609, 1977
BcnI CCSGG 1 cut(s) 3575
BfmI CTRYAG 4 cut(s) 182, 2690, 2749, 3606
BfrI CTTAAG 1 cut(s) 1753
BfuAI ACCTGC 1 cut(s) 1437
BfuI GTATCC 2 cut(s) 1573, 3550
BglII AGATCT 2 cut(s) 2462, 3993
BlnI CCTAGG 4 cut(s) 610, 980, 2908, 3331
BmcAI AGTACT 2 cut(s) 33, 674
Bme1390I CCNGG 4 cut(s) 293, 1938, 3575, 3651
Bme18I GGWCC 2 cut(s) 1020, 2090
BmeRI GACNNNNNGTC 2 cut(s) 1711, 3322
BmeT110I CYCGRG 1 cut(s) 2768
BmgBI CACGTC 1 cut(s) 3564
BmgT120I GGNCC 6 cut(s) 192, 1020, 2090, 2745, 4109, 4119
BmiI GGNNCC 6 cut(s) 92, 275, 1050, 1324, 2316, 3485
BmrFI CCNGG 4 cut(s) 293, 1938, 3575, 3651
BpiI GAAGAC 2 cut(s) 1109, 3761
BplI GAGNNNNNCTC 2 cut(s) 3587, 3619
BpmI CTGGAG 3 cut(s) 788, 1487, 4010
Bpu10I CCTNAGC 1 cut(s) 3864
Bpu14I TTCGAA 2 cut(s) 1700, 2146
BpuMI CCSGG 1 cut(s) 3575
BsaAI YACGTR 4 cut(s) 700, 1711, 1748, 2417
BsaBI GATNNNNATC 2 cut(s) 590, 2702
BsaHI GRCGYC 1 cut(s) 3792
BsaI GGTCTC 1 cut(s) 281
BsaWI WCCGGW 4 cut(s) 2868, 3291, 3432, 3592
BsaXI ACNNNNNCTCC 4 cut(s) 2622, 2652, 3660, 3690
Bsc4I CCNNNNNNNGG 8 cut(s) 283, 349, 413, 1251, 2441, 2577, 2830, 2875
Bse1I ACTGG 3 cut(s) 1470, 2835, 4111
Bse3DI GCAATG 2 cut(s) 1095, 1121
Bse8I GATNNNNATC 2 cut(s) 590, 2702
BseAI TCCGGA 3 cut(s) 2868, 3291, 3432
BseBI CCWGG 3 cut(s) 293, 1938, 3651
BseJI GATNNNNATC 2 cut(s) 590, 2702
BseLI CCNNNNNNNGG 8 cut(s) 283, 349, 413, 1251, 2441, 2577, 2830, 2875
BseMI GCAATG 2 cut(s) 1095, 1121
BseNI ACTGG 3 cut(s) 1470, 2835, 4111
BseRI GAGGAG 3 cut(s) 299, 3653, 3797
BseSI GKGCMC 1 cut(s) 3726
BsgI GTGCAG 7 cut(s) 468, 2773, 2914, 3055, 3196, 3337, 3478
Bsh1236I CGCG 1 cut(s) 96
BshFI GGCC 8 cut(s) 194, 609, 2133, 2445, 2747, 3862, 4110, 4120
BsiHKAI GWGCWC 1 cut(s) 2592
BsiHKCI CYCGRG 1 cut(s) 2768
BsiSI CCGG 6 cut(s) 24, 2869, 3292, 3433, 3575, 3593
BslFI GGGAC 6 cut(s) 429, 485, 1106, 2417, 3951, 4059
BslI CCNNNNNNNGG 8 cut(s) 283, 349, 413, 1251, 2441, 2577, 2830, 2875
BsmBI CGTCTC 4 cut(s) 2261, 2285, 2868, 3291
BsmFI GGGAC 6 cut(s) 429, 485, 1106, 2417, 3951, 4059
BsnI GGCC 8 cut(s) 194, 609, 2133, 2445, 2747, 3862, 4110, 4120
Bso31I GGTCTC 1 cut(s) 281
BsoBI CYCGRG 1 cut(s) 2768
Bsp119I TTCGAA 2 cut(s) 1700, 2146
Bsp1286I GDGCHC 8 cut(s) 2592, 2781, 2922, 3063, 3204, 3345, 3486, 3726
Bsp13I TCCGGA 3 cut(s) 2868, 3291, 3432
Bsp19I CCATGG 1 cut(s) 3025
BspANI GGCC 8 cut(s) 194, 609, 2133, 2445, 2747, 3862, 4110, 4120
BspEI TCCGGA 3 cut(s) 2868, 3291, 3432
BspFNI CGCG 1 cut(s) 96
BspHI TCATGA 4 cut(s) 160, 1399, 1597, 1612
BspLI GGNNCC 6 cut(s) 92, 275, 1050, 1324, 2316, 3485
BspMAI CTGCAG 1 cut(s) 186
BspMI ACCTGC 1 cut(s) 1437
BspQI GCTCTTC 2 cut(s) 2580, 3954
BspT104I TTCGAA 2 cut(s) 1700, 2146
BspTI CTTAAG 1 cut(s) 1753
BspTNI GGTCTC 1 cut(s) 281
BsrDI GCAATG 2 cut(s) 1095, 1121
BsrI ACTGG 3 cut(s) 1470, 2835, 4111
BssNI GRCGYC 1 cut(s) 3792
Bst2UI CCWGG 3 cut(s) 293, 1938, 3651
Bst4CI ACNGT 4 cut(s) 625, 2694, 2889, 4073
BstACI GRCGYC 1 cut(s) 3792
BstAFI CTTAAG 1 cut(s) 1753
BstBAI YACGTR 4 cut(s) 700, 1711, 1748, 2417
BstBI TTCGAA 2 cut(s) 1700, 2146
BstC8I GCNNGC 9 cut(s) 186, 355, 631, 1128, 1838, 1907, 2858, 3187, 3281
BstDSI CCRYGG 1 cut(s) 3025
BstFNI CGCG 1 cut(s) 96
BstHHI GCGC 1 cut(s) 1689
BstMWI GCNNNNNNNGC 5 cut(s) 17, 230, 318, 956, 2186
BstNI CCWGG 3 cut(s) 293, 1938, 3651
BstNSI RCATGY 4 cut(s) 1628, 2162, 2860, 3283
BstSCI CCNGG 4 cut(s) 291, 1936, 3573, 3649
BstSFI CTRYAG 4 cut(s) 182, 2690, 2749, 3606
BstSLI GKGCMC 1 cut(s) 3726
BstSNI TACGTA 1 cut(s) 700
BstUI CGCG 1 cut(s) 96
BstV2I GAAGAC 2 cut(s) 1109, 3761
BstX2I RGATCY 8 cut(s) 273, 1048, 1861, 1942, 2462, 2878, 3162, 3993
BstXI CCANNNNNNTGG 1 cut(s) 2247
BstYI RGATCY 8 cut(s) 273, 1048, 1861, 1942, 2462, 2878, 3162, 3993
BsuI GTATCC 2 cut(s) 1573, 3550
BsuRI GGCC 8 cut(s) 194, 609, 2133, 2445, 2747, 3862, 4110, 4120
BtgI CCRYGG 1 cut(s) 3025
BtgZI GCGATG 3 cut(s) 2701, 2983, 3124
BtrI CACGTC 1 cut(s) 3564
BtsI GCAGTG 1 cut(s) 2057
BtsIMutI CAGTG 2 cut(s) 2057, 2894
BveI ACCTGC 1 cut(s) 1437
Cac8I GCNNGC 9 cut(s) 186, 355, 631, 1128, 1838, 1907, 2858, 3187, 3281
CciI TCATGA 4 cut(s) 160, 1399, 1597, 1612
CfoI GCGC 1 cut(s) 1689
Cfr13I GGNCC 6 cut(s) 192, 1020, 2090, 2745, 4109, 4119
CseI GACGC 2 cut(s) 3766, 3800
Csp6I GTAC 7 cut(s) 32, 673, 697, 839, 2276, 2300, 2885
CviQI GTAC 7 cut(s) 32, 673, 697, 839, 2276, 2300, 2885
DraI TTTAAA 2 cut(s) 2230, 3909
DriI GACNNNNNGTC 2 cut(s) 1711, 3322
EaeI YGGCCR 1 cut(s) 2443
Eam1105I GACNNNNNGTC 2 cut(s) 1711, 3322
Ecl136II GAGCTC 1 cut(s) 2590
Eco105I TACGTA 1 cut(s) 700
Eco147I AGGCCT 1 cut(s) 609
Eco24I GRGCYC 7 cut(s) 2592, 2781, 2922, 3063, 3204, 3345, 3486
Eco31I GGTCTC 1 cut(s) 281
Eco32I GATATC 2 cut(s) 79, 2619
Eco47I GGWCC 2 cut(s) 1020, 2090
Eco53kI GAGCTC 1 cut(s) 2590
Eco57I CTGAAG 9 cut(s) 33, 189, 1862, 2646, 2783, 2924, 3065, 3206, 3347
Eco72I CACGTG 1 cut(s) 1711
Eco88I CYCGRG 1 cut(s) 2768
EcoICRI GAGCTC 1 cut(s) 2590
EcoO109I RGGNCCY 1 cut(s) 2090
EcoRII CCWGG 3 cut(s) 291, 1936, 3649
EcoRV GATATC 2 cut(s) 79, 2619
EcoT38I GRGCYC 7 cut(s) 2592, 2781, 2922, 3063, 3204, 3345, 3486
Esp3I CGTCTC 4 cut(s) 2261, 2285, 2868, 3291
FalI AAGNNNNNCTT 6 cut(s) 208, 240, 2177, 2209, 2195, 2227
FaqI GGGAC 6 cut(s) 429, 485, 1106, 2417, 3951, 4059
FauI CCCGC 2 cut(s) 415, 462
FauNDI CATATG 2 cut(s) 3168, 3556
FbaI TGATCA 4 cut(s) 61, 1402, 1609, 1977
FriOI GRGCYC 7 cut(s) 2592, 2781, 2922, 3063, 3204, 3345, 3486
GlaI GCGC 1 cut(s) 1688
GsuI CTGGAG 3 cut(s) 788, 1487, 4010
HaeIII GGCC 8 cut(s) 194, 609, 2133, 2445, 2747, 3862, 4110, 4120
HapII CCGG 6 cut(s) 24, 2869, 3292, 3433, 3575, 3593
HgaI GACGC 2 cut(s) 3766, 3800
HhaI GCGC 1 cut(s) 1689
Hin1I GRCGYC 1 cut(s) 3792
Hin6I GCGC 1 cut(s) 1687
HinP1I GCGC 1 cut(s) 1687
HincII GTYRAC 1 cut(s) 721
HindII GTYRAC 1 cut(s) 721
HindIII AAGCTT 2 cut(s) 1144, 2335
HpaII CCGG 6 cut(s) 24, 2869, 3292, 3433, 3575, 3593
Hpy166II GTNNAC 2 cut(s) 697, 721
Hpy8I GTNNAC 2 cut(s) 697, 721
HpyCH4III ACNGT 4 cut(s) 625, 2694, 2889, 4073
HpyCH4IV ACGT 7 cut(s) 699, 849, 1710, 1747, 2416, 2500, 3563
HpyF10VI GCNNNNNNNGC 5 cut(s) 17, 230, 318, 956, 2186
HpySE526I ACGT 7 cut(s) 699, 849, 1710, 1747, 2416, 2500, 3563
Hsp92I GRCGYC 1 cut(s) 3792
HspAI GCGC 1 cut(s) 1687
Kpn2I TCCGGA 3 cut(s) 2868, 3291, 3432
Ksp22I TGATCA 4 cut(s) 61, 1402, 1609, 1977
LguI GCTCTTC 2 cut(s) 2580, 3954
LmnI GCTCC 6 cut(s) 1310, 1328, 2035, 2507, 3489, 3784
MaeII ACGT 7 cut(s) 699, 849, 1710, 1747, 2416, 2500, 3563
MfeI CAATTG 3 cut(s) 65, 2732, 3155
MflI RGATCY 8 cut(s) 273, 1048, 1861, 1942, 2462, 2878, 3162, 3993
MhlI GDGCHC 8 cut(s) 2592, 2781, 2922, 3063, 3204, 3345, 3486, 3726
MlyI GAGTC 9 cut(s) 66, 411, 764, 991, 2215, 2395, 2439, 3572, 3979
MmeI TCCRAC 5 cut(s) 490, 1375, 2867, 2928, 3290
MroI TCCGGA 3 cut(s) 2868, 3291, 3432
MroXI GAANNNNTTC 4 cut(s) 573, 975, 2189, 3663
MslI CAYNNNNRTG 4 cut(s) 428, 2230, 3030, 3171
MspA1I CMGCKG 4 cut(s) 20, 410, 1282, 2624
MspCI CTTAAG 1 cut(s) 1753
MspI CCGG 6 cut(s) 24, 2869, 3292, 3433, 3575, 3593
MspR9I CCNGG 4 cut(s) 293, 1938, 3575, 3651
MunI CAATTG 3 cut(s) 65, 2732, 3155
MvaI CCWGG 3 cut(s) 293, 1938, 3651
MvnI CGCG 1 cut(s) 96
MwoI GCNNNNNNNGC 5 cut(s) 17, 230, 318, 956, 2186
NciI CCSGG 1 cut(s) 3575
NcoI CCATGG 1 cut(s) 3025
NdeI CATATG 2 cut(s) 3168, 3556
NlaIV GGNNCC 6 cut(s) 92, 275, 1050, 1324, 2316, 3485
NmeAIII GCCGAG 2 cut(s) 288, 2421
NmuCI GTSAC 8 cut(s) 757, 934, 2207, 2681, 3314, 3386, 3559, 3680
NspI RCATGY 4 cut(s) 1628, 2162, 2860, 3283
NspV TTCGAA 2 cut(s) 1700, 2146
PaeI GCATGC 2 cut(s) 2860, 3283
PaeR7I CTCGAG 1 cut(s) 2768
PagI TCATGA 4 cut(s) 160, 1399, 1597, 1612
PceI AGGCCT 1 cut(s) 609
PciI ACATGT 2 cut(s) 1624, 2158
PciSI GCTCTTC 2 cut(s) 2580, 3954
PcsI WCGNNNNNNNCGW 1 cut(s) 2609
PdmI GAANNNNTTC 4 cut(s) 573, 975, 2189, 3663
PleI GAGTC 9 cut(s) 66, 411, 764, 991, 2214, 2394, 2438, 3572, 3979
PmaCI CACGTG 1 cut(s) 1711
PmlI CACGTG 1 cut(s) 1711
PpsI GAGTC 9 cut(s) 66, 411, 764, 991, 2214, 2394, 2438, 3572, 3979
Ppu21I YACGTR 4 cut(s) 700, 1711, 1748, 2417
PpuMI RGGWCCY 1 cut(s) 2090
PscI ACATGT 2 cut(s) 1624, 2158
PshBI ATTAAT 1 cut(s) 2475
PsiI TTATAA 3 cut(s) 215, 228, 3518
Psp124BI GAGCTC 1 cut(s) 2592
Psp5II RGGWCCY 1 cut(s) 2090
Psp6I CCWGG 3 cut(s) 291, 1936, 3649
PspCI CACGTG 1 cut(s) 1711
PspGI CCWGG 3 cut(s) 291, 1936, 3649
PspN4I GGNNCC 6 cut(s) 92, 275, 1050, 1324, 2316, 3485
PspPI GGNCC 6 cut(s) 192, 1020, 2090, 2745, 4109, 4119
PspPPI RGGWCCY 1 cut(s) 2090
PspXI VCTCGAGB 1 cut(s) 2768
PstI CTGCAG 1 cut(s) 186
PsuI RGATCY 8 cut(s) 273, 1048, 1861, 1942, 2462, 2878, 3162, 3993
PvuII CAGCTG 1 cut(s) 2624
RsaI GTAC 7 cut(s) 33, 674, 698, 840, 2277, 2301, 2886
RsaNI GTAC 7 cut(s) 32, 673, 697, 839, 2276, 2300, 2885
RseI CAYNNNNRTG 4 cut(s) 428, 2230, 3030, 3171
SacI GAGCTC 1 cut(s) 2592
SapI GCTCTTC 2 cut(s) 2580, 3954
Sau96I GGNCC 6 cut(s) 192, 1020, 2090, 2745, 4109, 4119
ScaI AGTACT 2 cut(s) 33, 674
SchI GAGTC 9 cut(s) 66, 411, 764, 991, 2215, 2395, 2439, 3572, 3979
ScrFI CCNGG 4 cut(s) 293, 1938, 3575, 3651
SduI GDGCHC 8 cut(s) 2592, 2781, 2922, 3063, 3204, 3345, 3486, 3726
SfcI CTRYAG 4 cut(s) 182, 2690, 2749, 3606
Sfr274I CTCGAG 1 cut(s) 2768
SfuI TTCGAA 2 cut(s) 1700, 2146
SinI GGWCC 2 cut(s) 1020, 2090
SlaI CTCGAG 1 cut(s) 2768
SmiI ATTTAAAT 1 cut(s) 2230
SmiMI CAYNNNNRTG 4 cut(s) 428, 2230, 3030, 3171
SnaBI TACGTA 1 cut(s) 700
SphI GCATGC 2 cut(s) 2860, 3283
SseBI AGGCCT 1 cut(s) 609
SspI AATATT 2 cut(s) 574, 1675
SstI GAGCTC 1 cut(s) 2592
StuI AGGCCT 1 cut(s) 609
StyD4I CCNGG 4 cut(s) 291, 1936, 3573, 3649
SwaI ATTTAAAT 1 cut(s) 2230
TaaI ACNGT 4 cut(s) 625, 2694, 2889, 4073
TaiI ACGT 7 cut(s) 702, 852, 1713, 1750, 2419, 2503, 3566
TatI WGTACW 5 cut(s) 31, 672, 838, 2275, 2299
TauI GCSGC 2 cut(s) 20, 3108
TscAI CASTG 2 cut(s) 2064, 2894
TseFI GTSAC 8 cut(s) 757, 934, 2207, 2681, 3314, 3386, 3559, 3680
Tsp45I GTSAC 8 cut(s) 757, 934, 2207, 2681, 3314, 3386, 3559, 3680
TspRI CASTG 2 cut(s) 2064, 2894
Vha464I CTTAAG 1 cut(s) 1753
VpaK11BI GGWCC 2 cut(s) 1020, 2090
VspI ATTAAT 1 cut(s) 2475
XapI RAATTY 7 cut(s) 139, 907, 1972, 2015, 2395, 3707, 3888
XbaI TCTAGA 4 cut(s) 991, 2152, 2675, 3655
XceI RCATGY 4 cut(s) 1628, 2162, 2860, 3283
XhoI CTCGAG 1 cut(s) 2768
XmaJI CCTAGG 4 cut(s) 610, 980, 2908, 3331
XmnI GAANNNNTTC 4 cut(s) 573, 975, 2189, 3663
ZrmI AGTACT 2 cut(s) 33, 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.