gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Rx_N | PF18052 | 14 - 93 | 3.6e-10 | Rx N-terminal domain |
| NB-ARC | PF00931 | 182 - 357 | 4e-33 | NB-ARC domain |
| AAA_22 | PF13401 | 206 - 321 | 2e-07 | AAA domain |
| WHD_DRP | PF23559 | 446 - 526 | 1.7e-21 | Disease resistance protein Winged helix domain |
| gag_pre-integrs | PF13976 | 713 - 779 | 9.3e-15 | GAG-pre-integrase domain |
| rve | PF00665 | 792 - 891 | 3.1e-14 | Integrase core domain |
| SH3_retrovirus | PF25597 | 965 - 1026 | 3.8e-23 | Retroviral polymerase SH3-like domain |
| RVT_2 | PF07727 | 1218 - 1460 | 5.9e-76 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| LRR_14 | PF23598 | 1668 - 1959 | 1.3e-32 | Leucine-rich repeat region |
| LRR_R13L1-DRL21 | PF25019 | 1770 - 1896 | 3.4e-32 | R13L1/DRL21 LRRs |
| LRR_14 | PF23598 | 2233 - 2314 | 4e-10 | Leucine-rich repeat region |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 290, 3066 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2235 |
| AatII | GACGTC | 1 cut(s) | 2233 |
| Acc36I | ACCTGC | 3 cut(s) | 3367, 4331, 4864 |
| AccB1I | GGYRCC | 1 cut(s) | 6303 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2220 |
| AccBSI | CCGCTC | 1 cut(s) | 3372 |
| AccI | GTMKAC | 3 cut(s) | 2210, 3970, 3994 |
| AccII | CGCG | 4 cut(s) | 105, 785, 3381, 3487 |
| AccIII | TCCGGA | 2 cut(s) | 6069, 6210 |
| AclI | AACGTT | 1 cut(s) | 3751 |
| AcoI | YGGCCR | 2 cut(s) | 3464, 5647 |
| AcuI | CTGAAG | 7 cut(s) | 198, 1080, 5072, 5657, 5847, 5984, 6125 |
| AcvI | CACGTG | 1 cut(s) | 4115 |
| AcyI | GRCGYC | 2 cut(s) | 2230, 6663 |
| AdeI | CACNNNGTG | 2 cut(s) | 422, 2220 |
| AflII | CTTAAG | 2 cut(s) | 1783, 5422 |
| AhlI | ACTAGT | 1 cut(s) | 3026 |
| AjiI | CACGTC | 3 cut(s) | 2068, 2342, 4358 |
| AjnI | CCWGG | 7 cut(s) | 252, 2281, 2483, 3441, 3659, 3958, 6411 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 3005, 3037 |
| AleI | CACNNNNGTG | 2 cut(s) | 4139, 5424 |
| Alw21I | GWGCWC | 7 cut(s) | 1069, 2080, 2947, 4146, 4357, 5793, 6933 |
| Ama87I | CYCGRG | 2 cut(s) | 5551, 6956 |
| Aor13HI | TCCGGA | 2 cut(s) | 6069, 6210 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 3212, 3244, 3868, 3900 |
| Asp700I | GAANNNNTTC | 7 cut(s) | 600, 1002, 1705, 2775, 5399, 6441, 6534 |
| AspA2I | CCTAGG | 3 cut(s) | 637, 1007, 6109 |
| AspS9I | GGNCC | 7 cut(s) | 1047, 1418, 1736, 2411, 3760, 4281, 5300 |
| AsuC2I | CCSGG | 3 cut(s) | 3684, 4587, 4907 |
| AsuII | TTCGAA | 1 cut(s) | 5902 |
| AsuNHI | GCTAGC | 1 cut(s) | 2266 |
| AvaI | CYCGRG | 2 cut(s) | 5551, 6956 |
| AvaII | GGWCC | 5 cut(s) | 1047, 1418, 2411, 4281, 5300 |
| AvrII | CCTAGG | 3 cut(s) | 637, 1007, 6109 |
| AxyI | CCTNAGG | 1 cut(s) | 5465 |
| BaeGI | GKGCMC | 2 cut(s) | 6308, 6594 |
| BalI | TGGCCA | 1 cut(s) | 3466 |
| BanI | GGYRCC | 1 cut(s) | 6303 |
| BanII | GRGCYC | 5 cut(s) | 5793, 5982, 6123, 6264, 6933 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3348, 3380 |
| BauI | CACGAG | 1 cut(s) | 2940 |
| BbrPI | CACGTG | 1 cut(s) | 4115 |
| BbsI | GAAGAC | 2 cut(s) | 1136, 3878 |
| Bbv12I | GWGCWC | 7 cut(s) | 1069, 2080, 2947, 4146, 4357, 5793, 6933 |
| BceAI | ACGGC | 3 cut(s) | 5437, 6009, 6046 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 4760, 4794 |
| BciT130I | CCWGG | 7 cut(s) | 254, 2283, 2485, 3443, 3661, 3960, 6413 |
| BciVI | GTATCC | 3 cut(s) | 1597, 3343, 6328 |
| BclI | TGATCA | 5 cut(s) | 70, 1633, 3253, 4167, 5187 |
| BcnI | CCSGG | 3 cut(s) | 3684, 4587, 4907 |
| BcuI | ACTAGT | 1 cut(s) | 3026 |
| BfmI | CTRYAG | 4 cut(s) | 191, 1506, 3092, 5617 |
| BfrI | CTTAAG | 2 cut(s) | 1783, 5422 |
| BfuAI | ACCTGC | 3 cut(s) | 3367, 4331, 4864 |
| BfuI | GTATCC | 3 cut(s) | 1597, 3343, 6328 |
| BglII | AGATCT | 3 cut(s) | 5002, 5613, 5666 |
| BlnI | CCTAGG | 3 cut(s) | 637, 1007, 6109 |
| BmcAI | AGTACT | 1 cut(s) | 2362 |
| Bme18I | GGWCC | 5 cut(s) | 1047, 1418, 2411, 4281, 5300 |
| BmeT110I | CYCGRG | 2 cut(s) | 5551, 6956 |
| BmgBI | CACGTC | 3 cut(s) | 2068, 2342, 4358 |
| BmgT120I | GGNCC | 7 cut(s) | 1047, 1418, 1736, 2411, 3760, 4281, 5300 |
| BmrI | ACTGGG | 2 cut(s) | 414, 798 |
| BmtI | GCTAGC | 1 cut(s) | 2270 |
| BmuI | ACTGGG | 2 cut(s) | 414, 798 |
| BpiI | GAAGAC | 2 cut(s) | 1136, 3878 |
| BplI | GAGNNNNNCTC | 8 cut(s) | 1870, 1902, 3655, 3687, 3803, 3835, 6410, 6442 |
| BpmI | CTGGAG | 5 cut(s) | 791, 1502, 3318, 3682, 6434 |
| Bpu10I | CCTNAGC | 1 cut(s) | 6729 |
| Bpu14I | TTCGAA | 1 cut(s) | 5902 |
| BpuEI | CTTGAG | 9 cut(s) | 341, 1377, 3129, 3180, 5215, 6302, 6719, 6863, 6866 |
| BpuMI | CCSGG | 3 cut(s) | 3684, 4587, 4907 |
| BsaAI | YACGTR | 3 cut(s) | 727, 1778, 4115 |
| BsaBI | GATNNNNATC | 1 cut(s) | 5903 |
| BsaHI | GRCGYC | 2 cut(s) | 2230, 6663 |
| BsaI | GGTCTC | 4 cut(s) | 2144, 3175, 3233, 4022 |
| BsaWI | WCCGGW | 3 cut(s) | 2435, 6069, 6210 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 27, 57, 1190, 1220, 5823, 5853 |
| Bse1I | ACTGG | 8 cut(s) | 420, 459, 793, 1485, 3335, 4177, 4690, 5740 |
| Bse21I | CCTNAGG | 1 cut(s) | 5465 |
| Bse3DI | GCAATG | 6 cut(s) | 1122, 1449, 3627, 4794, 5267, 6019 |
| Bse8I | GATNNNNATC | 1 cut(s) | 5903 |
| BseAI | TCCGGA | 2 cut(s) | 6069, 6210 |
| BseBI | CCWGG | 7 cut(s) | 254, 2283, 2485, 3443, 3661, 3960, 6413 |
| BseJI | GATNNNNATC | 1 cut(s) | 5903 |
| BseMI | GCAATG | 6 cut(s) | 1122, 1449, 3627, 4794, 5267, 6019 |
| BseMII | CTCAG | 8 cut(s) | 2541, 3387, 4659, 5170, 5327, 5479, 5703, 6810 |
| BseNI | ACTGG | 8 cut(s) | 420, 459, 793, 1485, 3335, 4177, 4690, 5740 |
| BseSI | GKGCMC | 2 cut(s) | 6308, 6594 |
| BseYI | CCCAGC | 2 cut(s) | 182, 5234 |
| BsgI | GTGCAG | 7 cut(s) | 471, 2319, 2796, 3345, 5974, 6115, 6256 |
| Bsh1236I | CGCG | 4 cut(s) | 105, 785, 3381, 3487 |
| Bsh1285I | CGRYCG | 1 cut(s) | 6464 |
| BshNI | GGYRCC | 1 cut(s) | 6303 |
| BsiEI | CGRYCG | 1 cut(s) | 6464 |
| BsiHKAI | GWGCWC | 7 cut(s) | 1069, 2080, 2947, 4146, 4357, 5793, 6933 |
| BsiHKCI | CYCGRG | 2 cut(s) | 5551, 6956 |
| BsiSI | CCGG | 7 cut(s) | 33, 2436, 3684, 4586, 4907, 6070, 6211 |
| BslFI | GGGAC | 6 cut(s) | 441, 1133, 1404, 5621, 6816, 6933 |
| BsmBI | CGTCTC | 5 cut(s) | 359, 1747, 2348, 5480, 6069 |
| BsmFI | GGGAC | 6 cut(s) | 441, 1133, 1404, 5621, 6816, 6933 |
| BsmI | GAATGC | 1 cut(s) | 771 |
| Bso31I | GGTCTC | 4 cut(s) | 2144, 3175, 3233, 4022 |
| BsoBI | CYCGRG | 2 cut(s) | 5551, 6956 |
| Bsp119I | TTCGAA | 1 cut(s) | 5902 |
| Bsp13I | TCCGGA | 2 cut(s) | 6069, 6210 |
| Bsp1407I | TGTACA | 4 cut(s) | 3714, 3901, 5535, 6383 |
| BspCNI | CTCAG | 8 cut(s) | 2542, 3386, 4658, 5169, 5328, 5478, 5704, 6811 |
| BspEI | TCCGGA | 2 cut(s) | 6069, 6210 |
| BspFNI | CGCG | 4 cut(s) | 105, 785, 3381, 3487 |
| BspHI | TCATGA | 9 cut(s) | 1621, 1636, 1888, 3046, 3100, 3931, 4518, 4915, 6226 |
| BspMAI | CTGCAG | 3 cut(s) | 195, 3096, 5621 |
| BspMI | ACCTGC | 3 cut(s) | 3367, 4331, 4864 |
| BspOI | GCTAGC | 1 cut(s) | 2270 |
| BspQI | GCTCTTC | 2 cut(s) | 5781, 6819 |
| BspT104I | TTCGAA | 1 cut(s) | 5902 |
| BspT107I | GGYRCC | 1 cut(s) | 6303 |
| BspTI | CTTAAG | 2 cut(s) | 1783, 5422 |
| BspTNI | GGTCTC | 4 cut(s) | 2144, 3175, 3233, 4022 |
| BsrBI | CCGCTC | 1 cut(s) | 3372 |
| BsrDI | GCAATG | 6 cut(s) | 1122, 1449, 3627, 4794, 5267, 6019 |
| BsrGI | TGTACA | 4 cut(s) | 3714, 3901, 5535, 6383 |
| BsrI | ACTGG | 8 cut(s) | 420, 459, 793, 1485, 3335, 4177, 4690, 5740 |
| BssNI | GRCGYC | 2 cut(s) | 2230, 6663 |
| BssSI | CACGAG | 1 cut(s) | 2940 |
| BssT1I | CCWWGG | 8 cut(s) | 393, 637, 1007, 3774, 4089, 4529, 4702, 6109 |
| Bst2BI | CACGAG | 1 cut(s) | 2940 |
| Bst2UI | CCWGG | 7 cut(s) | 254, 2283, 2485, 3443, 3661, 3960, 6413 |
| BstACI | GRCGYC | 2 cut(s) | 2230, 6663 |
| BstAFI | CTTAAG | 2 cut(s) | 1783, 5422 |
| BstAUI | TGTACA | 4 cut(s) | 3714, 3901, 5535, 6383 |
| BstBAI | YACGTR | 3 cut(s) | 727, 1778, 4115 |
| BstBI | TTCGAA | 1 cut(s) | 5902 |
| BstDSI | CCRYGG | 2 cut(s) | 5147, 6594 |
| BstEII | GGTNACC | 1 cut(s) | 3923 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 3477, 6416, 6956 |
| BstFNI | CGCG | 4 cut(s) | 105, 785, 3381, 3487 |
| BstMCI | CGRYCG | 1 cut(s) | 6464 |
| BstNI | CCWGG | 7 cut(s) | 254, 2283, 2485, 3443, 3661, 3960, 6413 |
| BstNSI | RCATGY | 5 cut(s) | 8, 1658, 2012, 2504, 6061 |
| BstPI | GGTNACC | 1 cut(s) | 3923 |
| BstSFI | CTRYAG | 4 cut(s) | 191, 1506, 3092, 5617 |
| BstSLI | GKGCMC | 2 cut(s) | 6308, 6594 |
| BstSNI | TACGTA | 1 cut(s) | 727 |
| BstUI | CGCG | 4 cut(s) | 105, 785, 3381, 3487 |
| BstV2I | GAAGAC | 2 cut(s) | 1136, 3878 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2681 |
| Bsu36I | CCTNAGG | 1 cut(s) | 5465 |
| BsuI | GTATCC | 3 cut(s) | 1597, 3343, 6328 |
| BtgI | CCRYGG | 2 cut(s) | 5147, 6594 |
| BtgZI | GCGATG | 2 cut(s) | 2687, 5902 |
| BtrI | CACGTC | 3 cut(s) | 2068, 2342, 4358 |
| BtsI | GCAGTG | 3 cut(s) | 3114, 3825, 4134 |
| BtsIMutI | CAGTG | 8 cut(s) | 427, 531, 1307, 3114, 3825, 4134, 4170, 4467 |
| BveI | ACCTGC | 3 cut(s) | 3367, 4331, 4864 |
| CciI | TCATGA | 9 cut(s) | 1621, 1636, 1888, 3046, 3100, 3931, 4518, 4915, 6226 |
| Cfr13I | GGNCC | 7 cut(s) | 1047, 1418, 1736, 2411, 3760, 4281, 5300 |
| CseI | GACGC | 3 cut(s) | 791, 1687, 6671 |
| CsiI | ACCWGGT | 1 cut(s) | 2483 |
| DraI | TTTAAA | 2 cut(s) | 4389, 4629 |
| DraIII | CACNNNGTG | 2 cut(s) | 422, 2220 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2235 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2235 |
| EaeI | YGGCCR | 2 cut(s) | 3464, 5647 |
| EciI | GGCGGA | 3 cut(s) | 821, 2783, 6528 |
| Ecl136II | GAGCTC | 2 cut(s) | 5791, 6931 |
| Eco105I | TACGTA | 1 cut(s) | 727 |
| Eco130I | CCWWGG | 8 cut(s) | 393, 637, 1007, 3774, 4089, 4529, 4702, 6109 |
| Eco147I | AGGCCT | 1 cut(s) | 636 |
| Eco24I | GRGCYC | 5 cut(s) | 5793, 5982, 6123, 6264, 6933 |
| Eco31I | GGTCTC | 4 cut(s) | 2144, 3175, 3233, 4022 |
| Eco32I | GATATC | 4 cut(s) | 88, 250, 2969, 5820 |
| Eco47I | GGWCC | 5 cut(s) | 1047, 1418, 2411, 4281, 5300 |
| Eco53kI | GAGCTC | 2 cut(s) | 5791, 6931 |
| Eco57I | CTGAAG | 7 cut(s) | 198, 1080, 5072, 5657, 5847, 5984, 6125 |
| Eco72I | CACGTG | 1 cut(s) | 4115 |
| Eco81I | CCTNAGG | 1 cut(s) | 5465 |
| Eco88I | CYCGRG | 2 cut(s) | 5551, 6956 |
| Eco91I | GGTNACC | 1 cut(s) | 3923 |
| EcoICRI | GAGCTC | 2 cut(s) | 5791, 6931 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 3477, 6416, 6956 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2411, 5300 |
| EcoO65I | GGTNACC | 1 cut(s) | 3923 |
| EcoRI | GAATTC | 1 cut(s) | 509 |
| EcoRII | CCWGG | 7 cut(s) | 252, 2281, 2483, 3441, 3659, 3958, 6411 |
| EcoRV | GATATC | 4 cut(s) | 88, 250, 2969, 5820 |
| EcoT14I | CCWWGG | 8 cut(s) | 393, 637, 1007, 3774, 4089, 4529, 4702, 6109 |
| EcoT22I | ATGCAT | 5 cut(s) | 6, 1557, 2502, 2957, 4321 |
| EcoT38I | GRGCYC | 5 cut(s) | 5793, 5982, 6123, 6264, 6933 |
| ErhI | CCWWGG | 8 cut(s) | 393, 637, 1007, 3774, 4089, 4529, 4702, 6109 |
| Esp3I | CGTCTC | 5 cut(s) | 359, 1747, 2348, 5480, 6069 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 217, 249, 2733, 2765, 5387, 5419 |
| FaqI | GGGAC | 6 cut(s) | 441, 1133, 1404, 5621, 6816, 6933 |
| FauI | CCCGC | 2 cut(s) | 1907, 3770 |
| FauNDI | CATATG | 3 cut(s) | 2902, 4542, 6334 |
| FbaI | TGATCA | 5 cut(s) | 70, 1633, 3253, 4167, 5187 |
| FblI | GTMKAC | 3 cut(s) | 2210, 3970, 3994 |
| FriOI | GRGCYC | 5 cut(s) | 5793, 5982, 6123, 6264, 6933 |
| GsaI | CCCAGC | 2 cut(s) | 186, 5238 |
| GsuI | CTGGAG | 5 cut(s) | 791, 1502, 3318, 3682, 6434 |
| HapII | CCGG | 7 cut(s) | 33, 2436, 3684, 4586, 4907, 6070, 6211 |
| HgaI | GACGC | 3 cut(s) | 791, 1687, 6671 |
| Hin1I | GRCGYC | 2 cut(s) | 2230, 6663 |
| HincII | GTYRAC | 7 cut(s) | 3202, 3971, 3995, 4156, 4680, 5253, 5433 |
| HindII | GTYRAC | 7 cut(s) | 3202, 3971, 3995, 4156, 4680, 5253, 5433 |
| HindIII | AAGCTT | 7 cut(s) | 1171, 1786, 3639, 4026, 4391, 4632, 5530 |
| HpaI | GTTAAC | 1 cut(s) | 5253 |
| HpaII | CCGG | 7 cut(s) | 33, 2436, 3684, 4586, 4907, 6070, 6211 |
| Hpy99I | CGWCG | 4 cut(s) | 765, 785, 1681, 2232 |
| Hsp92I | GRCGYC | 2 cut(s) | 2230, 6663 |
| Kpn2I | TCCGGA | 2 cut(s) | 6069, 6210 |
| Ksp22I | TGATCA | 5 cut(s) | 70, 1633, 3253, 4167, 5187 |
| KspAI | GTTAAC | 1 cut(s) | 5253 |
| LguI | GCTCTTC | 2 cut(s) | 5781, 6819 |
| MabI | ACCWGGT | 1 cut(s) | 2483 |
| MbiI | CCGCTC | 1 cut(s) | 3372 |
| MfeI | CAATTG | 8 cut(s) | 1356, 2025, 2261, 2457, 3744, 5307, 5933, 6636 |
| MlsI | TGGCCA | 1 cut(s) | 3466 |
| MluI | ACGCGT | 2 cut(s) | 3379, 3485 |
| MluNI | TGGCCA | 1 cut(s) | 3466 |
| MmeI | TCCRAC | 8 cut(s) | 517, 1269, 1402, 1700, 2944, 4688, 6068, 6215 |
| Mox20I | TGGCCA | 1 cut(s) | 3466 |
| Mph1103I | ATGCAT | 5 cut(s) | 6, 1557, 2502, 2957, 4321 |
| MroI | TCCGGA | 2 cut(s) | 6069, 6210 |
| MroXI | GAANNNNTTC | 7 cut(s) | 600, 1002, 1705, 2775, 5399, 6441, 6534 |
| MscI | TGGCCA | 1 cut(s) | 3466 |
| MslI | CAYNNNNRTG | 7 cut(s) | 2436, 2880, 3249, 3847, 4139, 4360, 5424 |
| Msp20I | TGGCCA | 1 cut(s) | 3466 |
| MspA1I | CMGCKG | 2 cut(s) | 5622, 5825 |
| MspCI | CTTAAG | 2 cut(s) | 1783, 5422 |
| MspI | CCGG | 7 cut(s) | 33, 2436, 3684, 4586, 4907, 6070, 6211 |
| MunI | CAATTG | 8 cut(s) | 1356, 2025, 2261, 2457, 3744, 5307, 5933, 6636 |
| Mva1269I | GAATGC | 1 cut(s) | 771 |
| MvaI | CCWGG | 7 cut(s) | 254, 2283, 2485, 3443, 3661, 3960, 6413 |
| MvnI | CGCG | 4 cut(s) | 105, 785, 3381, 3487 |
| NciI | CCSGG | 3 cut(s) | 3684, 4587, 4907 |
| NdeI | CATATG | 3 cut(s) | 2902, 4542, 6334 |
| NheI | GCTAGC | 1 cut(s) | 2266 |
| NmeAIII | GCCGAG | 3 cut(s) | 300, 4795, 5625 |
| NmuCI | GTSAC | 9 cut(s) | 961, 1847, 3923, 4471, 4640, 4871, 5417, 5777, 6551 |
| NsiI | ATGCAT | 5 cut(s) | 6, 1557, 2502, 2957, 4321 |
| NspI | RCATGY | 5 cut(s) | 8, 1658, 2012, 2504, 6061 |
| NspV | TTCGAA | 1 cut(s) | 5902 |
| OliI | CACNNNNGTG | 2 cut(s) | 4139, 5424 |
| PaeI | GCATGC | 2 cut(s) | 2504, 6061 |
| PaeR7I | CTCGAG | 1 cut(s) | 6956 |
| PagI | TCATGA | 9 cut(s) | 1621, 1636, 1888, 3046, 3100, 3931, 4518, 4915, 6226 |
| PceI | AGGCCT | 1 cut(s) | 636 |
| PciI | ACATGT | 1 cut(s) | 1654 |
| PciSI | GCTCTTC | 2 cut(s) | 5781, 6819 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 5781 |
| PctI | GAATGC | 1 cut(s) | 771 |
| PdmI | GAANNNNTTC | 7 cut(s) | 600, 1002, 1705, 2775, 5399, 6441, 6534 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2220 |
| PfoI | TCCNGGA | 2 cut(s) | 252, 6411 |
| PmaCI | CACGTG | 1 cut(s) | 4115 |
| PmlI | CACGTG | 1 cut(s) | 4115 |
| Ppu21I | YACGTR | 3 cut(s) | 727, 1778, 4115 |
| PpuMI | RGGWCCY | 2 cut(s) | 2411, 5300 |
| PscI | ACATGT | 1 cut(s) | 1654 |
| PsiI | TTATAA | 2 cut(s) | 290, 3066 |
| Psp124BI | GAGCTC | 2 cut(s) | 5793, 6933 |
| Psp1406I | AACGTT | 1 cut(s) | 3751 |
| Psp5II | RGGWCCY | 2 cut(s) | 2411, 5300 |
| Psp6I | CCWGG | 7 cut(s) | 252, 2281, 2483, 3441, 3659, 3958, 6411 |
| PspCI | CACGTG | 1 cut(s) | 4115 |
| PspEI | GGTNACC | 1 cut(s) | 3923 |
| PspFI | CCCAGC | 2 cut(s) | 182, 5234 |
| PspGI | CCWGG | 7 cut(s) | 252, 2281, 2483, 3441, 3659, 3958, 6411 |
| PspPI | GGNCC | 7 cut(s) | 1047, 1418, 1736, 2411, 3760, 4281, 5300 |
| PspPPI | RGGWCCY | 2 cut(s) | 2411, 5300 |
| PspXI | VCTCGAGB | 1 cut(s) | 6956 |
| PstI | CTGCAG | 3 cut(s) | 195, 3096, 5621 |
| PvuII | CAGCTG | 1 cut(s) | 5825 |
| RseI | CAYNNNNRTG | 7 cut(s) | 2436, 2880, 3249, 3847, 4139, 4360, 5424 |
| SacI | GAGCTC | 2 cut(s) | 5793, 6933 |
| SalI | GTCGAC | 2 cut(s) | 3969, 3993 |
| SapI | GCTCTTC | 2 cut(s) | 5781, 6819 |
| Sau96I | GGNCC | 7 cut(s) | 1047, 1418, 1736, 2411, 3760, 4281, 5300 |
| ScaI | AGTACT | 1 cut(s) | 2362 |
| SexAI | ACCWGGT | 1 cut(s) | 2483 |
| SfcI | CTRYAG | 4 cut(s) | 191, 1506, 3092, 5617 |
| Sfr274I | CTCGAG | 1 cut(s) | 6956 |
| SfuI | TTCGAA | 1 cut(s) | 5902 |
| SinI | GGWCC | 5 cut(s) | 1047, 1418, 2411, 4281, 5300 |
| SlaI | CTCGAG | 1 cut(s) | 6956 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 2436, 2880, 3249, 3847, 4139, 4360, 5424 |
| SnaBI | TACGTA | 1 cut(s) | 727 |
| SpeI | ACTAGT | 1 cut(s) | 3026 |
| SphI | GCATGC | 2 cut(s) | 2504, 6061 |
| SseBI | AGGCCT | 1 cut(s) | 636 |
| SspI | AATATT | 5 cut(s) | 601, 2850, 2870, 3556, 4256 |
| SstI | GAGCTC | 2 cut(s) | 5793, 6933 |
| StuI | AGGCCT | 1 cut(s) | 636 |
| StyI | CCWWGG | 8 cut(s) | 393, 637, 1007, 3774, 4089, 4529, 4702, 6109 |
| TaqII | GACCGA | 1 cut(s) | 6478 |
| TatI | WGTACW | 7 cut(s) | 7, 865, 2360, 3714, 3901, 5535, 6383 |
| TauI | GCSGC | 3 cut(s) | 1157, 3372, 4901 |
| TscAI | CASTG | 8 cut(s) | 427, 538, 1314, 3114, 3832, 4141, 4177, 4474 |
| TseFI | GTSAC | 9 cut(s) | 961, 1847, 3923, 4471, 4640, 4871, 5417, 5777, 6551 |
| Tsp45I | GTSAC | 9 cut(s) | 961, 1847, 3923, 4471, 4640, 4871, 5417, 5777, 6551 |
| TspGWI | ACGGA | 5 cut(s) | 1678, 5504, 5556, 5918, 6539 |
| TspRI | CASTG | 8 cut(s) | 427, 538, 1314, 3114, 3832, 4141, 4177, 4474 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2220 |
| Vha464I | CTTAAG | 2 cut(s) | 1783, 5422 |
| VpaK11BI | GGWCC | 5 cut(s) | 1047, 1418, 2411, 4281, 5300 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 3477, 6416, 6956 |
| XbaI | TCTAGA | 4 cut(s) | 1216, 4999, 5497, 6433 |
| XceI | RCATGY | 5 cut(s) | 8, 1658, 2012, 2504, 6061 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 1412, 2760, 5351 |
| XhoI | CTCGAG | 1 cut(s) | 6956 |
| XmaJI | CCTAGG | 3 cut(s) | 637, 1007, 6109 |
| XmiI | GTMKAC | 3 cut(s) | 2210, 3970, 3994 |
| XmnI | GAANNNNTTC | 7 cut(s) | 600, 1002, 1705, 2775, 5399, 6441, 6534 |
| ZraI | GACGTC | 1 cut(s) | 2231 |
| ZrmI | AGTACT | 1 cut(s) | 2362 |
| Zsp2I | ATGCAT | 5 cut(s) | 6, 1557, 2502, 2957, 4321 |