Rw3G013520

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0009425
Physical Location & Seq
Reverse (-)
13384184 .. 13389171
4988 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G013520.1

Sequence Viewer

Length: 2457 bp
ATGAGAGTGTTGGTCATCCTTGGCTACACTAGCTCTTCAATCTCCACTCCCCCAAATCCCAATGGCAACCGCTCCACCAAACCCTACAAGCCTCCAATCCCCAAGCTCTCCCCTTCCAAATCCTCCCCTCCAATCTCCACCCTCCACTCCCGGCCGCCGCCTCTCTTCGCCGGCCGCTGGGACCCCCACAACACCCACCTCTCCTACTTCGCCGACCTCGCCTCCAAGCTCGCCCGCGACGGCAAGCTCGACGACTTCGCCATGATCGCCGAGAGCGTCGTCCTCTCCGGCGTCAAGCCCTCGCAGTTCGCCGCCGCGCTCAAGGTCGACATGGTCGCCAGGGGCATTTCCGGGTTTTTGAAGGAGGGGAAGGTCAGGCGCGTCGTGGAGGTGTTGACCAAAGTTGACGAGCTTGGGGTTCGGCCGCTGGAGCTGTTTGATGGCTACCCTATGGAGTTGCTGGCAGGACATTGTCAGCGCCTTTTGAAATTCAAGCAAGTTCAGGAACTTGTTGAGCTTATGGAGGTTCTTTCAGGTTTGCATTTCCCAATCAAAGAACTGGTGGAGCCATCTGAAGTCATCAAAACATGTGTCGATAAACGAAGCCCGAAATTGGCCATAAGGTATGCTTGTATTTTTCCACATGCGCATATCTTATTCTGTAACATTATGAATGAGTTTGGAAAGAGGAGGGCATTGGCGTCTGCTTTGGCAGCATATGAAGCATCTAAGGAAAAATTGAGTGGTTCTAATATGTACATCTACCGCACAATAATTGACGTCTGTGGTGTCTGCAAAGACTACATGAAATCTAGGTACATTTATGAGGACTTGCTCAAACAGAAGGTCATTCCGAATATATATGTTTTCAACAGTCTGATGAATGTGAACTCACATGATCTGAGCTACACATTTCATGTATACAAGAGTATGCAGAATCTTGGTGTCAAAGCAGATTTGGCATGTTACAATATTCTTTTGAAGGCATGCTGTCTTGCTGGAAGAGTTGATCTGGCACAAGATATTTATAGGGAAGTACAGCATTTGGAATCGACAGGAGTGATGAAATTGGATGTCTTCACTTACAGCACTATTGTAAAGGTCTTTTCAGATGCAAAAATGTGGCACATGGCTTTAAATGTCAAAGAAGATATGCTAGCAGCAGGTGTTATGCCAAATACAATTACATGTCCATCATTGATCAGTGCCTGTGCAAATGCAGGTCTTGTGGATAAGGCAATTCAATTGTTTGAAGAGATGCTCTTGGCCGGCTGTGAACCTAATTCACAGTGCTTTAACATCCTTCTGCATGCTTGTGTTGAGGCTTGCCAGTATGACAGGGCTTTTCGCCTTTTCCATTCTTTTAAGAGTAATAAGGTCCAGGAGACTTTTGGCAAAAACTACAAAGGGCTTTCTTTTAAACCCACAACTACAACATACAATACTTTGATGAAGGCCTGTGGGTCTGACTACTACCATGCAAGAGCACTGATGGATGAGATGAAAACAGTAGGTCTTTTTCCTAATCAAATAACATGGTCGATTTTGGCTGATATATGTGGAAACTCGGGGAATGTTGAGGGTGCCTTGCAGATCTTGAAAAGTATGCGTGTAGCTGGGATCCAACCTGATGTTGTTGCCTATACAACAGCCATCAAGATCTGCGTGGAAAGTGAAAATCTGGACTTAGCATTGTCGCTTTTTGCAGAAATGAAAAAGTATCAGATACACCCAAATTTGGTGACATATAATACACTTTTAAGGGCTCGTAGCAGATATGGTTCTGTAAGTGAAGTACAACAATGCCTGGCTATATATCAGGACATGCGGAAAGCAGGTTACAAGCCCAATGATTATTACCTTGAGCAACTAATTGAGGAATGGTGTGAAGGAGTTATACAAGACAGCAGCCCGAAACAAGGTGAGTTCAGTTACTGGGACAAAGCTGGCATTGGGAGACCTGGAAGTGTGCTTCTTGAAAAAGTTGCAGAACACTTACAACAGCATATTGCTGACACTTTAGCAGTTGACCTTCAAGGACTTACAAAGGTTGAAGCTCGGATAGTTGTTCTTGCAGTTCTGCGAATGATCAAAGAGAACTATACCTTAGGAGATTCGGTAAAAGATGACATGTTGATCATGGTAGGAGTCCATGATGAGGTTGATGGAGGCTCAACAGCTCAAAATTTAGAGGTCATAGATGCAATAACCAAGCTTCTACAGGATGAATTGGGGCTCAAGGTTCTTTCAACAGTACCTAAAGTTGCACTTGATACTACAATAGTATCCGAGAACAATATAGATTCGGATCAAAATTTGGAAGAAAAGCCAGTAAGGAATGAATTACACTCAGAGTTGATTTATTCCACTAGAAGACCCGTGGTTCTGGAAAGGCTAAAGGTATCCAGGAAATCATTGCAACAATGGCTGCGAAAAAGAAGTTCCCTTAGGAGGTGA

Protein Analysis

818

Amino Acids

91.68

Weight (kDa)

8.3

Isoelectric Point (pI)

38.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 225 - 354 5.8e-08 Pentacotripeptide-repeat region of PRORP
TPR_24 PF23276 322 - 455 7.5e-08 Fungal tetratrico peptide repeats
PPR_long PF17177 355 - 460 3.2e-07 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 358 - 406 2.2e-07 PPR repeat family
PPR_3 PF13812 381 - 441 2.4e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 389 - 420 5.9e-06 PPR repeat
PPR_2 PF13041 392 - 440 1.2e-12 PPR repeat family
PPR_long PF17177 480 - 624 2e-12 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 532 - 589 2.8e-14 Pentatricopeptide repeat domain
PPR_2 PF13041 543 - 589 6.4e-13 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1154
AatII GACGTC 1 cut(s) 783
Acc16I TGCGCA 1 cut(s) 648
Acc36I ACCTGC 3 cut(s) 1154, 1211, 1826
AccB1I GGYRCC 1 cut(s) 1583
AccBSI CCGCTC 1 cut(s) 72
AccI GTMKAC 2 cut(s) 327, 921
AccII CGCG 3 cut(s) 237, 317, 381
AclWI GGATC 3 cut(s) 1615, 1628, 2316
AcoI YGGCCR 5 cut(s) 152, 172, 422, 615, 1266
AcsI RAATTY 4 cut(s) 488, 1735, 2185, 2314
AcuI CTGAAG 1 cut(s) 594
AcyI GRCGYC 3 cut(s) 291, 701, 780
AfaI GTAC 5 cut(s) 758, 818, 1038, 1797, 2256
AfiI CCNNNNNNNGG 6 cut(s) 177, 613, 1738, 1919, 2158, 2451
AflIII ACRYGT 3 cut(s) 587, 1187, 2130
AjnI CCWGG 5 cut(s) 338, 1380, 1806, 1960, 2405
Alw21I GWGCWC 1 cut(s) 1489
Alw26I GTCTC 2 cut(s) 1379, 1951
AlwI GGATC 3 cut(s) 1615, 1628, 2316
AlwNI CAGNNNCTG 2 cut(s) 1209, 1935
Ama87I CYCGRG 1 cut(s) 1567
AoxI GGCC 6 cut(s) 152, 172, 422, 615, 1266, 1455
ApeKI GCWGC 4 cut(s) 713, 1160, 1908, 2428
ApoI RAATTY 4 cut(s) 488, 1735, 2185, 2314
ArsI GACNNNNNNTTYG 4 cut(s) 576, 608, 831, 863
AspLEI GCGC 4 cut(s) 319, 381, 480, 649
AspS9I GGNCC 2 cut(s) 181, 1378
AsuC2I CCSGG 2 cut(s) 151, 352
AsuHPI GGTGA 2 cut(s) 1753, 1934
AsuNHI GCTAGC 1 cut(s) 1156
AvaI CYCGRG 1 cut(s) 1567
AvaII GGWCC 2 cut(s) 181, 1378
AxyI CCTNAGG 2 cut(s) 2107, 2447
BaeI ACNNNNGTAYC 2 cut(s) 2268, 2301
BalI TGGCCA 1 cut(s) 617
BamHI GGATCC 1 cut(s) 1620
BanI GGYRCC 1 cut(s) 1583
BanII GRGCYC 2 cut(s) 1768, 2238
BarI GAAGNNNNNNTAC 2 cut(s) 1881, 1913
BbsI GAAGAC 2 cut(s) 1069, 2380
Bbv12I GWGCWC 1 cut(s) 1489
BbvI GCAGC 4 cut(s) 725, 1172, 1920, 2415
BccI CCATC 6 cut(s) 434, 577, 1201, 1486, 1661, 2159
BceAI ACGGC 1 cut(s) 256
BciT130I CCWGG 5 cut(s) 340, 1382, 1808, 1962, 2407
BciVI GTATCC 2 cut(s) 2296, 2413
BclI TGATCA 3 cut(s) 1200, 2088, 2136
BcnI CCSGG 2 cut(s) 151, 352
BcoDI GTCTC 2 cut(s) 1379, 1951
BfaI CTAG 4 cut(s) 30, 813, 1157, 2370
BfmI CTRYAG 1 cut(s) 2219
BfoI RGCGCY 1 cut(s) 481
BfuAI ACCTGC 3 cut(s) 1154, 1211, 1826
BfuI GTATCC 2 cut(s) 2296, 2413
BglII AGATCT 2 cut(s) 1593, 1659
Bme1390I CCNGG 7 cut(s) 151, 340, 352, 1382, 1808, 1962, 2407
Bme18I GGWCC 2 cut(s) 181, 1378
BmeT110I CYCGRG 1 cut(s) 1567
BmgT120I GGNCC 2 cut(s) 181, 1378
BmiI GGNNCC 5 cut(s) 182, 183, 567, 1585, 1622
BmrFI CCNGG 7 cut(s) 151, 340, 352, 1382, 1808, 1962, 2407
BmrI ACTGGG 1 cut(s) 1945
BmsI GCATC 4 cut(s) 734, 1102, 1248, 2191
BmtI GCTAGC 1 cut(s) 1160
BmuI ACTGGG 1 cut(s) 1945
BpiI GAAGAC 2 cut(s) 1069, 2380
BpmI CTGGAG 1 cut(s) 449
BpuEI CTTGAG 3 cut(s) 305, 1883, 2222
BpuMI CCSGG 2 cut(s) 151, 352
BsaBI GATNNNNATC 1 cut(s) 2307
BsaHI GRCGYC 3 cut(s) 291, 701, 780
BsaI GGTCTC 1 cut(s) 1951
BsaJI CCNNGG 3 cut(s) 19, 339, 2379
BsaXI ACNNNNNCTCC 4 cut(s) 206, 236, 2103, 2133
Bsc4I CCNNNNNNNGG 6 cut(s) 177, 613, 1738, 1919, 2158, 2451
Bse118I RCCGGY 2 cut(s) 170, 1268
Bse1I ACTGG 4 cut(s) 564, 1330, 1940, 2330
Bse21I CCTNAGG 2 cut(s) 2107, 2447
Bse3DI GCAATG 1 cut(s) 2414
Bse8I GATNNNNATC 1 cut(s) 2307
BseBI CCWGG 5 cut(s) 340, 1382, 1808, 1962, 2407
BseDI CCNNGG 3 cut(s) 19, 339, 2379
BseGI GGATG 5 cut(s) 15, 1078, 1299, 1501, 2230
BseJI GATNNNNATC 1 cut(s) 2307
BseLI CCNNNNNNNGG 6 cut(s) 177, 613, 1738, 1919, 2158, 2451
BseMI GCAATG 1 cut(s) 2414
BseMII CTCAG 2 cut(s) 893, 2364
BseNI ACTGG 4 cut(s) 564, 1330, 1940, 2330
BseRI GAGGAG 1 cut(s) 703
BseX3I CGGCCG 3 cut(s) 152, 172, 422
BseXI GCAGC 4 cut(s) 725, 1172, 1920, 2415
BseYI CCCAGC 2 cut(s) 177, 1616
Bsh1236I CGCG 3 cut(s) 237, 317, 381
Bsh1285I CGRYCG 3 cut(s) 155, 175, 425
BshFI GGCC 6 cut(s) 154, 174, 424, 617, 1268, 1457
BshNI GGYRCC 1 cut(s) 1583
BsiEI CGRYCG 3 cut(s) 155, 175, 425
BsiHKAI GWGCWC 1 cut(s) 1489
BsiHKCI CYCGRG 1 cut(s) 1567
BsiSI CCGG 5 cut(s) 151, 171, 288, 351, 1269
BslFI GGGAC 2 cut(s) 194, 1952
BslI CCNNNNNNNGG 6 cut(s) 177, 613, 1738, 1919, 2158, 2451
BsmAI GTCTC 2 cut(s) 1379, 1951
BsmFI GGGAC 2 cut(s) 194, 1952
BsnI GGCC 6 cut(s) 154, 174, 424, 617, 1268, 1457
Bso31I GGTCTC 1 cut(s) 1951
BsoBI CYCGRG 1 cut(s) 1567
Bsp1286I GDGCHC 3 cut(s) 1489, 1768, 2238
Bsp1407I TGTACA 1 cut(s) 756
BspANI GGCC 6 cut(s) 154, 174, 424, 617, 1268, 1457
BspCNI CTCAG 2 cut(s) 894, 2363
BspFNI CGCG 3 cut(s) 237, 317, 381
BspLI GGNNCC 5 cut(s) 182, 183, 567, 1585, 1622
BspMI ACCTGC 3 cut(s) 1154, 1211, 1826
BspOI GCTAGC 1 cut(s) 1160
BspPI GGATC 3 cut(s) 1615, 1628, 2316
BspQI GCTCTTC 1 cut(s) 40
BspT107I GGYRCC 1 cut(s) 1583
BspTNI GGTCTC 1 cut(s) 1951
BsrBI CCGCTC 1 cut(s) 72
BsrDI GCAATG 1 cut(s) 2414
BsrFI RCCGGY 2 cut(s) 170, 1268
BsrGI TGTACA 1 cut(s) 756
BsrI ACTGG 4 cut(s) 564, 1330, 1940, 2330
BssAI RCCGGY 2 cut(s) 170, 1268
BssECI CCNNGG 3 cut(s) 19, 339, 2379
BssNAI GTATAC 1 cut(s) 922
BssNI GRCGYC 3 cut(s) 291, 701, 780
BssT1I CCWWGG 1 cut(s) 19
Bst1107I GTATAC 1 cut(s) 922
Bst2UI CCWGG 5 cut(s) 340, 1382, 1808, 1962, 2407
Bst4CI ACNGT 4 cut(s) 875, 1290, 1510, 2254
Bst6I CTCTTC 4 cut(s) 40, 170, 997, 1248
BstACI GRCGYC 3 cut(s) 291, 701, 780
BstAUI TGTACA 1 cut(s) 756
BstDEI CTNAG 6 cut(s) 729, 902, 1687, 2107, 2350, 2447
BstDSI CCRYGG 1 cut(s) 2379
BstF5I GGATG 5 cut(s) 15, 1078, 1299, 1501, 2230
BstFNI CGCG 3 cut(s) 237, 317, 381
BstH2I RGCGCY 1 cut(s) 481
BstHHI GCGC 4 cut(s) 319, 381, 480, 649
BstMAI GTCTC 2 cut(s) 1379, 1951
BstMCI CGRYCG 3 cut(s) 155, 175, 425
BstMWI GCNNNNNNNGC 8 cut(s) 30, 218, 266, 430, 713, 722, 959, 2425
BstNI CCWGG 5 cut(s) 340, 1382, 1808, 1962, 2407
BstNSI RCATGY 8 cut(s) 591, 647, 966, 990, 1191, 1313, 1828, 2134
BstSCI CCNGG 7 cut(s) 149, 338, 350, 1380, 1806, 1960, 2405
BstSFI CTRYAG 1 cut(s) 2219
BstUI CGCG 3 cut(s) 237, 317, 381
BstV1I GCAGC 4 cut(s) 725, 1172, 1920, 2415
BstV2I GAAGAC 2 cut(s) 1069, 2380
BstX2I RGATCY 3 cut(s) 1593, 1620, 1659
BstYI RGATCY 3 cut(s) 1593, 1620, 1659
BstZ17I GTATAC 1 cut(s) 922
BstZI CGGCCG 3 cut(s) 152, 172, 422
Bsu36I CCTNAGG 2 cut(s) 2107, 2447
BsuI GTATCC 2 cut(s) 2296, 2413
BsuRI GGCC 6 cut(s) 154, 174, 424, 617, 1268, 1457
BtgI CCRYGG 1 cut(s) 2379
BtsCI GGATG 5 cut(s) 15, 1078, 1299, 1501, 2230
BtsIMutI CAGTG 3 cut(s) 1210, 1295, 1487
BveI ACCTGC 3 cut(s) 1154, 1211, 1826
CaiI CAGNNNCTG 2 cut(s) 1209, 1935
CfoI GCGC 4 cut(s) 319, 381, 480, 649
Cfr10I RCCGGY 2 cut(s) 170, 1268
Cfr13I GGNCC 2 cut(s) 181, 1378
CseI GACGC 4 cut(s) 265, 280, 370, 690
Csp6I GTAC 5 cut(s) 757, 817, 1037, 1796, 2255
CviQI GTAC 5 cut(s) 757, 817, 1037, 1796, 2255
DdeI CTNAG 6 cut(s) 729, 902, 1687, 2107, 2350, 2447
DraI TTTAAA 2 cut(s) 1137, 1420
EaeI YGGCCR 5 cut(s) 152, 172, 422, 615, 1266
EagI CGGCCG 3 cut(s) 152, 172, 422
Eam1104I CTCTTC 4 cut(s) 40, 170, 997, 1248
EarI CTCTTC 4 cut(s) 40, 170, 997, 1248
EclXI CGGCCG 3 cut(s) 152, 172, 422
Eco130I CCWWGG 1 cut(s) 19
Eco147I AGGCCT 1 cut(s) 1457
Eco24I GRGCYC 2 cut(s) 1768, 2238
Eco31I GGTCTC 1 cut(s) 1951
Eco47I GGWCC 2 cut(s) 181, 1378
Eco52I CGGCCG 3 cut(s) 152, 172, 422
Eco57I CTGAAG 1 cut(s) 594
Eco81I CCTNAGG 2 cut(s) 2107, 2447
Eco88I CYCGRG 1 cut(s) 1567
EcoO109I RGGNCCY 1 cut(s) 181
EcoRII CCWGG 5 cut(s) 338, 1380, 1806, 1960, 2405
EcoT14I CCWWGG 1 cut(s) 19
EcoT38I GRGCYC 2 cut(s) 1768, 2238
ErhI CCWWGG 1 cut(s) 19
FalI AAGNNNNNCTT 4 cut(s) 613, 645, 2253, 2285
FaqI GGGAC 2 cut(s) 194, 1952
FauI CCCGC 1 cut(s) 242
FauNDI CATATG 1 cut(s) 718
FbaI TGATCA 3 cut(s) 1200, 2088, 2136
FblI GTMKAC 2 cut(s) 327, 921
FokI GGATG 5 cut(s) 2, 1085, 1286, 1508, 2237
FriOI GRGCYC 2 cut(s) 1768, 2238
FspAI RTGCGCAY 1 cut(s) 648
FspBI CTAG 4 cut(s) 30, 813, 1157, 2370
FspI TGCGCA 1 cut(s) 648
GlaI GCGC 4 cut(s) 318, 380, 479, 648
GsaI CCCAGC 2 cut(s) 181, 1620
GsuI CTGGAG 1 cut(s) 449
HaeII RGCGCY 1 cut(s) 481
HaeIII GGCC 6 cut(s) 154, 174, 424, 617, 1268, 1457
HapII CCGG 5 cut(s) 151, 171, 288, 351, 1269
HgaI GACGC 4 cut(s) 265, 280, 370, 690
HhaI GCGC 4 cut(s) 319, 381, 480, 649
Hin1I GRCGYC 3 cut(s) 291, 701, 780
Hin6I GCGC 4 cut(s) 317, 379, 478, 647
HinP1I GCGC 4 cut(s) 317, 379, 478, 647
HincII GTYRAC 4 cut(s) 328, 396, 406, 2029
HindII GTYRAC 4 cut(s) 328, 396, 406, 2029
HindIII AAGCTT 1 cut(s) 2213
HinfI GANTC 5 cut(s) 937, 1049, 2114, 2148, 2303
HpaII CCGG 5 cut(s) 151, 171, 288, 351, 1269
HphI GGTGA 2 cut(s) 1753, 1934
Hpy166II GTNNAC 7 cut(s) 328, 396, 406, 889, 922, 1277, 2029
Hpy188III TCNNGA 7 cut(s) 503, 1597, 1657, 1682, 1820, 1976, 2387
Hpy8I GTNNAC 7 cut(s) 328, 396, 406, 889, 922, 1277, 2029
Hpy99I CGWCG 4 cut(s) 242, 254, 281, 386
HpyAV CCTTC 9 cut(s) 123, 355, 364, 838, 976, 1313, 1447, 1883, 2042
HpyCH4III ACNGT 4 cut(s) 875, 1290, 1510, 2254
HpyCH4IV ACGT 1 cut(s) 780
HpyF10VI GCNNNNNNNGC 8 cut(s) 30, 218, 266, 430, 713, 722, 959, 2425
HpyF3I CTNAG 6 cut(s) 729, 902, 1687, 2107, 2350, 2447
HpySE526I ACGT 1 cut(s) 780
Hsp92I GRCGYC 3 cut(s) 291, 701, 780
HspAI GCGC 4 cut(s) 317, 379, 478, 647
KflI GGGWCCC 1 cut(s) 181
KroI GCCGGC 2 cut(s) 170, 1268
KroNI GCCGGC 2 cut(s) 172, 1270
Ksp22I TGATCA 3 cut(s) 1200, 2088, 2136
LguI GCTCTTC 1 cut(s) 40
LmnI GCTCC 3 cut(s) 77, 430, 565
Lsp1109I GCAGC 4 cut(s) 725, 1172, 1920, 2415
LweI GCATC 4 cut(s) 734, 1102, 1248, 2191
MaeI CTAG 4 cut(s) 30, 813, 1157, 2370
MaeII ACGT 1 cut(s) 780
MaeIII GTNAC 5 cut(s) 662, 965, 1741, 1838, 1931
MbiI CCGCTC 1 cut(s) 72
MboII GAAGA 8 cut(s) 27, 157, 1014, 1069, 1160, 1265, 2333, 2385
MfeI CAATTG 1 cut(s) 1244
MflI RGATCY 3 cut(s) 1593, 1620, 1659
MhlI GDGCHC 3 cut(s) 1489, 1768, 2238
MlsI TGGCCA 1 cut(s) 617
MluNI TGGCCA 1 cut(s) 617
MlyI GAGTC 1 cut(s) 2157
MmeI TCCRAC 1 cut(s) 1648
Mox20I TGGCCA 1 cut(s) 617
MroNI GCCGGC 2 cut(s) 170, 1268
MscI TGGCCA 1 cut(s) 617
MseI TTAA 5 cut(s) 1136, 1296, 1365, 1419, 1760
MslI CAYNNNNRTG 1 cut(s) 1314
Msp20I TGGCCA 1 cut(s) 617
MspA1I CMGCKG 2 cut(s) 177, 427
MspI CCGG 5 cut(s) 151, 171, 288, 351, 1269
MspR9I CCNGG 7 cut(s) 151, 340, 352, 1382, 1808, 1962, 2407
MunI CAATTG 1 cut(s) 1244
MvaI CCWGG 5 cut(s) 340, 1382, 1808, 1962, 2407
MvnI CGCG 3 cut(s) 237, 317, 381
MwoI GCNNNNNNNGC 8 cut(s) 30, 218, 266, 430, 713, 722, 959, 2425
NaeI GCCGGC 2 cut(s) 172, 1270
NciI CCSGG 2 cut(s) 151, 352
NdeI CATATG 1 cut(s) 718
NgoMIV GCCGGC 2 cut(s) 170, 1268
NheI GCTAGC 1 cut(s) 1156
NlaIV GGNNCC 5 cut(s) 182, 183, 567, 1585, 1622
NmeAIII GCCGAG 1 cut(s) 295
NmuCI GTSAC 1 cut(s) 1741
NsbI TGCGCA 1 cut(s) 648
NspI RCATGY 8 cut(s) 591, 647, 966, 990, 1191, 1313, 1828, 2134
PaeI GCATGC 2 cut(s) 990, 1313
PaqCI CACCTGC 1 cut(s) 1154
PceI AGGCCT 1 cut(s) 1457
PciI ACATGT 3 cut(s) 587, 1187, 2130
PciSI GCTCTTC 1 cut(s) 40
PcsI WCGNNNNNNNCGW 2 cut(s) 246, 273
PdiI GCCGGC 2 cut(s) 172, 1270
PfeI GAWTC 4 cut(s) 937, 1049, 2114, 2303
PflFI GACNNNGTC 2 cut(s) 332, 471
PfoI TCCNGGA 2 cut(s) 1380, 2405
PleI GAGTC 1 cut(s) 2156
PpsI GAGTC 1 cut(s) 2156
PpuMI RGGWCCY 1 cut(s) 181
PscI ACATGT 3 cut(s) 587, 1187, 2130
Psp5II RGGWCCY 1 cut(s) 181
Psp6I CCWGG 5 cut(s) 338, 1380, 1806, 1960, 2405
PspFI CCCAGC 2 cut(s) 177, 1616
PspGI CCWGG 5 cut(s) 338, 1380, 1806, 1960, 2405
PspN4I GGNNCC 5 cut(s) 182, 183, 567, 1585, 1622
PspPI GGNCC 2 cut(s) 181, 1378
PspPPI RGGWCCY 1 cut(s) 181
PstNI CAGNNNCTG 2 cut(s) 1209, 1935
PsuI RGATCY 3 cut(s) 1593, 1620, 1659
PsyI GACNNNGTC 2 cut(s) 332, 471
RsaI GTAC 5 cut(s) 758, 818, 1038, 1797, 2256
RsaNI GTAC 5 cut(s) 757, 817, 1037, 1796, 2255
RseI CAYNNNNRTG 1 cut(s) 1314
SalI GTCGAC 1 cut(s) 326
SapI GCTCTTC 1 cut(s) 40
SaqAI TTAA 5 cut(s) 1136, 1296, 1365, 1419, 1760
Sau96I GGNCC 2 cut(s) 181, 1378
SchI GAGTC 1 cut(s) 2157
ScrFI CCNGG 7 cut(s) 151, 340, 352, 1382, 1808, 1962, 2407
SduI GDGCHC 3 cut(s) 1489, 1768, 2238
SfaNI GCATC 4 cut(s) 734, 1102, 1248, 2191
SfcI CTRYAG 1 cut(s) 2219
SinI GGWCC 2 cut(s) 181, 1378
SmiMI CAYNNNNRTG 1 cut(s) 1314
SmlI CTYRAG 3 cut(s) 320, 1862, 2237
SmoI CTYRAG 3 cut(s) 320, 1862, 2237
SphI GCATGC 2 cut(s) 990, 1313
SseBI AGGCCT 1 cut(s) 1457
SspI AATATT 1 cut(s) 973
SspMI CTAG 4 cut(s) 30, 813, 1157, 2370
StuI AGGCCT 1 cut(s) 1457
StyD4I CCNGG 7 cut(s) 149, 338, 350, 1380, 1806, 1960, 2405
StyI CCWWGG 1 cut(s) 19
TaaI ACNGT 4 cut(s) 875, 1290, 1510, 2254
TaiI ACGT 1 cut(s) 783
TaqI TCGA 5 cut(s) 249, 327, 594, 1052, 1541
TatI WGTACW 3 cut(s) 756, 1036, 1795
TauI GCSGC 6 cut(s) 157, 160, 177, 314, 317, 427
TfiI GAWTC 4 cut(s) 937, 1049, 2114, 2303
Tru1I TTAA 5 cut(s) 1136, 1296, 1365, 1419, 1760
Tru9I TTAA 5 cut(s) 1136, 1296, 1365, 1419, 1760
TscAI CASTG 3 cut(s) 1210, 1295, 1494
TseFI GTSAC 1 cut(s) 1741
TseI GCWGC 4 cut(s) 713, 1160, 1908, 2428
Tsp45I GTSAC 1 cut(s) 1741
TspRI CASTG 3 cut(s) 1210, 1295, 1494
Tth111I GACNNNGTC 2 cut(s) 332, 471
VpaK11BI GGWCC 2 cut(s) 181, 1378
XapI RAATTY 4 cut(s) 488, 1735, 2185, 2314
XceI RCATGY 8 cut(s) 591, 647, 966, 990, 1191, 1313, 1828, 2134
XcmI CCANNNNNNNNNTGG 1 cut(s) 1388
XmiI GTMKAC 2 cut(s) 327, 921
XspI CTAG 4 cut(s) 30, 813, 1157, 2370
ZraI GACGTC 1 cut(s) 781
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.