Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0009425

Physical Location & Seq

Genomic Coordinates Reverse (-)

13414990 .. 13416896

Gene Structure 1907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G013550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGAAGGCCTGTGGGTCTGACTACTACCATGCAAGAGCACTGATGGATGAGATGAAAACAGTAGGTCTTTTTCCTAATCAAATAACATGGTCGATTTTGGCTGATATATGTGGAAACTCGGGGAATGTTGAGGGTGCCTTGCAGATCTTGAAAAGTATGCGTGTAGCTGGGATCCAACCTGATGTTGTTGCCTATACAACAGCCATCAAGATCTGCGTGGAAAGTGAAAATTTGGACTTAGCATTGTCGCTGTTTGCAGAAATGAAAAAATATCAGATACACCCAAATTTGGTGACATATAATACACTTTTAAGGGCTCGTAGCAGATATGGTTCTGTAAGTGAAGTACAACAATGCCTGGCTATATATCAGGACATGCGGAAAGCAGGTTACAAGCCCAATGATTATTACCTTGAGCAACTAATTGAGGAATGGTGTGAAGGAGTTATACAAGACAGCAGCCCGAAACAAGGTGAGTTCAGTTACTGGGACAAAGCTGGCATTGGGAGACCTGGAAGTGTGCTTCTTGAAAAAGTTGCAGAACACCTACAACAGCATATTGCTGACACTTTAGCAGTTGACCTTCAAGGACTTACAAAGGTTGAAGCTCGGATAGTTGTTCTTGCAGTTCTGCGAATGATCAAAGAGAACTATACCTTAGGAGATTCGGTAAAAGATGACATGTTGATCATGGTAGGAGTCCATGATGAGGTTGATGGAGGCTCAACAGCTCACAATTTAGAGGTCATAGATGCAATAACCAAGCTTCTACAGGATGAATTGGGGCTCAAGGTTCTTTCAACAGTACCTAAAGTTGCACTTGATACTACAATAGTATCCGAGAACAATATATATTCAGATCAAACTTTGGAAGAAAAGCCAGTAAGGAATGAATTACACTCGGAGTTGATTTATTCCACTAGAAGACCCGTGGTTCTGGAAAGGCTAAAGGTATCCAGGAAATCATTGCAACAATGGCTGCGAAAAAGAAGTTCCCTTAGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

335

Amino Acids

37.7

Weight (kDa)

5.88

Isoelectric Point (pI)

39.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	7 - 141	1.2e-12	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	49 - 106	8.1e-15	Pentatricopeptide repeat domain
PPR_2	PF13041	60 - 106	1.9e-13	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02830
fragaria_vesca	FvH4_6g15120 FvH4_6g15120 FvH4_6g15120 FvH4_6g15120 FvH4_6g15120
malus_domestica	MD12G1126500.v1.1
prunus_persica	Prupe.6G243100_v2.0.a1
pyrus_communis	pycom12g12460
rosa_chinensis	RchiOBHm_Chr3g0468421
rosa_laevigata	RLG00000024430
rosa_multiflora	Rmu_sc0014003.1_g000015 Rmu_sc0020046.1_g000004
rosa_roxburghii	Rroxscaffold_6G00412780
rosa_rugosa	Rorug03G0095300 Rorug03G0095400
rosa_samantha	Rh3AG143100 Rh3BG165500 Rh3DG165100
rosa_wichuraiana	Rw0G014180 Rw3G013520 Rw3G013550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	377
AccB1I	GGYRCC	1 cut(s)	134
AciI	CCGC	1 cut(s)	379
AclWI	GGATC	2 cut(s)	166, 179
AcsI	RAATTY	2 cut(s)	229, 286
AfaI	GTAC	2 cut(s)	348, 807
AfiI	CCNNNNNNNGG	4 cut(s)	289, 470, 709, 1002
AflIII	ACRYGT	1 cut(s)	681
AgsI	TTSAA	5 cut(s)	151, 530, 587, 605, 801
AjnI	CCWGG	3 cut(s)	357, 511, 956
AluBI	AGCT	5 cut(s)	167, 497, 608, 731, 766
AluI	AGCT	5 cut(s)	167, 497, 608, 731, 766
Alw21I	GWGCWC	1 cut(s)	40
Alw26I	GTCTC	1 cut(s)	502
AlwI	GGATC	2 cut(s)	166, 179
AlwNI	CAGNNNCTG	1 cut(s)	486
Ama87I	CYCGRG	1 cut(s)	118
AoxI	GGCC	1 cut(s)	6
ApeKI	GCWGC	2 cut(s)	459, 979
ApoI	RAATTY	2 cut(s)	229, 286
AsuHPI	GGTGA	2 cut(s)	304, 485
AvaI	CYCGRG	1 cut(s)	118
AxyI	CCTNAGG	2 cut(s)	658, 998
BaeI	ACNNNNGTAYC	2 cut(s)	819, 852
BamHI	GGATCC	1 cut(s)	171
BanI	GGYRCC	1 cut(s)	134
BanII	GRGCYC	2 cut(s)	319, 789
BarI	GAAGNNNNNNTAC	2 cut(s)	432, 464
BbsI	GAAGAC	1 cut(s)	931
Bbv12I	GWGCWC	1 cut(s)	40
BbvI	GCAGC	2 cut(s)	471, 966
BccI	CCATC	3 cut(s)	37, 212, 710
BciT130I	CCWGG	3 cut(s)	359, 513, 958
BciVI	GTATCC	2 cut(s)	847, 964
BclI	TGATCA	2 cut(s)	639, 687
BcoDI	GTCTC	1 cut(s)	502
BfaI	CTAG	1 cut(s)	921
BfmI	CTRYAG	1 cut(s)	770
BfuAI	ACCTGC	1 cut(s)	377
BfuI	GTATCC	2 cut(s)	847, 964
BglII	AGATCT	2 cut(s)	144, 210
BisI	GCNGC	2 cut(s)	460, 980
BlsI	GCNGC	2 cut(s)	461, 981
Bme1390I	CCNGG	3 cut(s)	359, 513, 958
BmeT110I	CYCGRG	1 cut(s)	118
BmiI	GGNNCC	2 cut(s)	136, 173
BmrFI	CCNGG	3 cut(s)	359, 513, 958
BmrI	ACTGGG	1 cut(s)	496
BmsI	GCATC	1 cut(s)	742
BmuI	ACTGGG	1 cut(s)	496
BpiI	GAAGAC	1 cut(s)	931
BpuEI	CTTGAG	2 cut(s)	434, 773
BsaI	GGTCTC	1 cut(s)	502
BsaJI	CCNNGG	1 cut(s)	930
BsaXI	ACNNNNNCTCC	2 cut(s)	654, 684
Bsc4I	CCNNNNNNNGG	4 cut(s)	289, 470, 709, 1002
Bse1I	ACTGG	2 cut(s)	491, 881
Bse21I	CCTNAGG	2 cut(s)	658, 998
Bse3DI	GCAATG	1 cut(s)	965
BseBI	CCWGG	3 cut(s)	359, 513, 958
BseDI	CCNNGG	1 cut(s)	930
BseGI	GGATG	2 cut(s)	52, 781
BseLI	CCNNNNNNNGG	4 cut(s)	289, 470, 709, 1002
BseMI	GCAATG	1 cut(s)	965
BseNI	ACTGG	2 cut(s)	491, 881
BseXI	GCAGC	2 cut(s)	471, 966
BseYI	CCCAGC	1 cut(s)	167
BshFI	GGCC	1 cut(s)	8
BshNI	GGYRCC	1 cut(s)	134
BsiHKAI	GWGCWC	1 cut(s)	40
BsiHKCI	CYCGRG	1 cut(s)	118
BslFI	GGGAC	1 cut(s)	503
BslI	CCNNNNNNNGG	4 cut(s)	289, 470, 709, 1002
BsmAI	GTCTC	1 cut(s)	502
BsmFI	GGGAC	1 cut(s)	503
BsnI	GGCC	1 cut(s)	8
Bso31I	GGTCTC	1 cut(s)	502
BsoBI	CYCGRG	1 cut(s)	118
Bsp1286I	GDGCHC	3 cut(s)	40, 319, 789
Bsp143I	GATC	6 cut(s)	144, 171, 210, 639, 687, 859
BspACI	CCGC	1 cut(s)	379
BspANI	GGCC	1 cut(s)	8
BspLI	GGNNCC	2 cut(s)	136, 173
BspMI	ACCTGC	1 cut(s)	377
BspPI	GGATC	2 cut(s)	166, 179
BspT107I	GGYRCC	1 cut(s)	134
BspTNI	GGTCTC	1 cut(s)	502
BsrDI	GCAATG	1 cut(s)	965
BsrI	ACTGG	2 cut(s)	491, 881
BssECI	CCNNGG	1 cut(s)	930
BssMI	GATC	6 cut(s)	144, 171, 210, 639, 687, 859
Bst2UI	CCWGG	3 cut(s)	359, 513, 958
Bst4CI	ACNGT	2 cut(s)	61, 805
BstC8I	GCNNGC	1 cut(s)	499
BstDEI	CTNAG	3 cut(s)	238, 658, 998
BstDSI	CCRYGG	1 cut(s)	930
BstF5I	GGATG	2 cut(s)	52, 781
BstKTI	GATC	6 cut(s)	147, 174, 213, 642, 690, 862
BstMAI	GTCTC	1 cut(s)	502
BstMBI	GATC	6 cut(s)	144, 171, 210, 639, 687, 859
BstMWI	GCNNNNNNNGC	1 cut(s)	976
BstNI	CCWGG	3 cut(s)	359, 513, 958
BstNSI	RCATGY	2 cut(s)	379, 685
BstSCI	CCNGG	3 cut(s)	357, 511, 956
BstSFI	CTRYAG	1 cut(s)	770
BstV1I	GCAGC	2 cut(s)	471, 966
BstV2I	GAAGAC	1 cut(s)	931
BstX2I	RGATCY	3 cut(s)	144, 171, 210
BstYI	RGATCY	3 cut(s)	144, 171, 210
Bsu36I	CCTNAGG	2 cut(s)	658, 998
BsuI	GTATCC	2 cut(s)	847, 964
BsuRI	GGCC	1 cut(s)	8
BtgI	CCRYGG	1 cut(s)	930
BtsCI	GGATG	2 cut(s)	52, 781
BtsIMutI	CAGTG	1 cut(s)	38
BveI	ACCTGC	1 cut(s)	377
Cac8I	GCNNGC	1 cut(s)	499
CaiI	CAGNNNCTG	1 cut(s)	486
Csp6I	GTAC	2 cut(s)	347, 806
CviAII	CATG	6 cut(s)	29, 87, 376, 682, 691, 704
CviQI	GTAC	2 cut(s)	347, 806
DdeI	CTNAG	3 cut(s)	238, 658, 998
DpnI	GATC	6 cut(s)	146, 173, 212, 641, 689, 861
DpnII	GATC	6 cut(s)	144, 171, 210, 639, 687, 859
Eco147I	AGGCCT	1 cut(s)	8
Eco24I	GRGCYC	2 cut(s)	319, 789
Eco31I	GGTCTC	1 cut(s)	502
Eco81I	CCTNAGG	2 cut(s)	658, 998
Eco88I	CYCGRG	1 cut(s)	118
EcoRII	CCWGG	3 cut(s)	357, 511, 956
EcoT38I	GRGCYC	2 cut(s)	319, 789
FaeI	CATG	6 cut(s)	32, 90, 379, 685, 694, 707
FalI	AAGNNNNNCTT	2 cut(s)	804, 836
FaqI	GGGAC	1 cut(s)	503
FatI	CATG	6 cut(s)	28, 86, 375, 681, 690, 703
FbaI	TGATCA	2 cut(s)	639, 687
Fnu4HI	GCNGC	2 cut(s)	460, 980
FokI	GGATG	2 cut(s)	59, 788
FriOI	GRGCYC	2 cut(s)	319, 789
Fsp4HI	GCNGC	2 cut(s)	460, 980
FspBI	CTAG	1 cut(s)	921
GluI	GCNGC	2 cut(s)	460, 980
GsaI	CCCAGC	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	8
Hin1II	CATG	6 cut(s)	32, 90, 379, 685, 694, 707
HincII	GTYRAC	1 cut(s)	580
HindII	GTYRAC	1 cut(s)	580
HindIII	AAGCTT	1 cut(s)	764
HinfI	GANTC	2 cut(s)	665, 699
HphI	GGTGA	2 cut(s)	304, 485
Hpy166II	GTNNAC	1 cut(s)	580
Hpy188I	TCNGA	6 cut(s)	19, 276, 612, 841, 859, 904
Hpy188III	TCNNGA	5 cut(s)	148, 208, 371, 527, 938
Hpy8I	GTNNAC	1 cut(s)	580
HpyAV	CCTTC	2 cut(s)	434, 593
HpyCH4III	ACNGT	2 cut(s)	61, 805
HpyCH4V	TGCA	8 cut(s)	32, 142, 257, 539, 626, 755, 818, 970
HpyF10VI	GCNNNNNNNGC	1 cut(s)	976
HpyF3I	CTNAG	3 cut(s)	238, 658, 998
Hsp92II	CATG	6 cut(s)	32, 90, 379, 685, 694, 707
Ksp22I	TGATCA	2 cut(s)	639, 687
Kzo9I	GATC	6 cut(s)	144, 171, 210, 639, 687, 859
Lsp1109I	GCAGC	2 cut(s)	471, 966
LweI	GCATC	1 cut(s)	742
MaeI	CTAG	1 cut(s)	921
MaeIII	GTNAC	3 cut(s)	292, 389, 482
MalI	GATC	6 cut(s)	146, 173, 212, 641, 689, 861
MboI	GATC	6 cut(s)	144, 171, 210, 639, 687, 859
MboII	GAAGA	2 cut(s)	884, 936
MflI	RGATCY	3 cut(s)	144, 171, 210
MhlI	GDGCHC	3 cut(s)	40, 319, 789
MluCI	AATT	6 cut(s)	229, 286, 423, 736, 779, 893
MlyI	GAGTC	1 cut(s)	708
MmeI	TCCRAC	1 cut(s)	199
MnlI	CCTC	6 cut(s)	124, 421, 703, 713, 736, 996
MseI	TTAA	1 cut(s)	311
MspR9I	CCNGG	3 cut(s)	359, 513, 958
MvaI	CCWGG	3 cut(s)	359, 513, 958
MwoI	GCNNNNNNNGC	1 cut(s)	976
NdeII	GATC	6 cut(s)	144, 171, 210, 639, 687, 859
NlaIII	CATG	6 cut(s)	32, 90, 379, 685, 694, 707
NlaIV	GGNNCC	2 cut(s)	136, 173
NmuCI	GTSAC	1 cut(s)	292
NspI	RCATGY	2 cut(s)	379, 685
PceI	AGGCCT	1 cut(s)	8
PciI	ACATGT	1 cut(s)	681
PfeI	GAWTC	1 cut(s)	665
PfoI	TCCNGGA	1 cut(s)	956
PkrI	GCNGC	2 cut(s)	461, 981
PleI	GAGTC	1 cut(s)	707
PpsI	GAGTC	1 cut(s)	707
PscI	ACATGT	1 cut(s)	681
Psp6I	CCWGG	3 cut(s)	357, 511, 956
PspFI	CCCAGC	1 cut(s)	167
PspGI	CCWGG	3 cut(s)	357, 511, 956
PspN4I	GGNNCC	2 cut(s)	136, 173
PstNI	CAGNNNCTG	1 cut(s)	486
PsuI	RGATCY	3 cut(s)	144, 171, 210
RsaI	GTAC	2 cut(s)	348, 807
RsaNI	GTAC	2 cut(s)	347, 806
SaqAI	TTAA	1 cut(s)	311
SatI	GCNGC	2 cut(s)	460, 980
Sau3AI	GATC	6 cut(s)	144, 171, 210, 639, 687, 859
SchI	GAGTC	1 cut(s)	708
ScrFI	CCNGG	3 cut(s)	359, 513, 958
SduI	GDGCHC	3 cut(s)	40, 319, 789
SfaNI	GCATC	1 cut(s)	742
SfcI	CTRYAG	1 cut(s)	770
SmlI	CTYRAG	2 cut(s)	413, 788
SmoI	CTYRAG	2 cut(s)	413, 788
Sse9I	AATT	6 cut(s)	229, 286, 423, 736, 779, 893
SseBI	AGGCCT	1 cut(s)	8
SsiI	CCGC	1 cut(s)	379
SspMI	CTAG	1 cut(s)	921
StuI	AGGCCT	1 cut(s)	8
StyD4I	CCNGG	3 cut(s)	357, 511, 956
TaaI	ACNGT	2 cut(s)	61, 805
TaqI	TCGA	1 cut(s)	92
TasI	AATT	6 cut(s)	229, 286, 423, 736, 779, 893
TatI	WGTACW	1 cut(s)	346
TfiI	GAWTC	1 cut(s)	665
Tru1I	TTAA	1 cut(s)	311
Tru9I	TTAA	1 cut(s)	311
TscAI	CASTG	1 cut(s)	45
TseFI	GTSAC	1 cut(s)	292
TseI	GCWGC	2 cut(s)	459, 979
Tsp45I	GTSAC	1 cut(s)	292
TspDTI	ATGAA	5 cut(s)	17, 68, 278, 792, 906
TspRI	CASTG	1 cut(s)	45
XapI	RAATTY	2 cut(s)	229, 286
XceI	RCATGY	2 cut(s)	379, 685
XspI	CTAG	1 cut(s)	921

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.